BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780801|ref|YP_003065214.1| hypothetical protein
CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
(222 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|218461353|ref|ZP_03501444.1| putative alanine racemase protein [Rhizobium etli Kim 5]
Length = 219
Score = 201 bits (510), Expect = 8e-50, Method: Composition-based stats.
Identities = 111/219 (50%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I + A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAAERAAGRPAGSVRLVAVSKTFEAEAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIE+V REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAEYPDIELHLIGPLQSNKAADAVALFDVIESVDREKIARALAEEMKRQGKT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y++VNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVEVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|187736250|ref|YP_001878362.1| alanine racemase domain protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426302|gb|ACD05581.1| alanine racemase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 231
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +I + + A RP SV LVAVSK ++ ++ GQ IF ENK+QE
Sbjct: 1 MSIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D + IG LQ NKV + + F +I V + A + + +
Sbjct: 61 GLGKIPS--LPPDTEWHLIGPLQRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRP 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ ++VN G E K G P + L + GLMCIPP + NP+ +
Sbjct: 119 RILLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMCIPPPVENPEEARPYFRRL 178
Query: 181 ARECK----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
RE K LT+LSMGM+ DFE AI GAT VR+G+ IFG R
Sbjct: 179 -RELKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSY 227
>gi|190893971|ref|YP_001980513.1| alanine racemase [Rhizobium etli CIAT 652]
gi|190699250|gb|ACE93335.1| putative alanine racemase protein [Rhizobium etli CIAT 652]
Length = 219
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 116/219 (52%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ IF EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERAAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRIFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P++T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDETPAFVTLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVRIGS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRIGSAIFGAR 219
>gi|323137154|ref|ZP_08072233.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
gi|322397512|gb|EFY00035.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
Length = 223
Score = 197 bits (501), Expect = 8e-49, Method: Composition-based stats.
Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 1/223 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L K I +A R V+LV V+K ++ + L G +F EN++QE
Sbjct: 1 MTIIDRLNETKASIARAATDCGRDPAEVTLVCVTKTFPAEDVVPLLDAGHRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW K D++L IG LQSNK E V FDVI++V REK A LS EM K R
Sbjct: 61 AMGKWPALREKYPDIELHLIGPLQSNKTQEAVETFDVIQSVDREKIAKALSEEMAKTGRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G++P + F+ CR+KY L + GLMC+PP PHF LL++
Sbjct: 121 PRLFVQVNTGAEPQKAGVLPEEADAFIAACREKYGLEIAGLMCVPPVGEQASPHFALLAD 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
IA L +LSMGM+ D+ELAI GAT VR+GS I G R T
Sbjct: 181 IAARNGLRELSMGMSSDYELAIQLGATYVRVGSAIMGARDYST 223
>gi|253700158|ref|YP_003021347.1| alanine racemase domain protein [Geobacter sp. M21]
gi|251775008|gb|ACT17589.1| alanine racemase domain protein [Geobacter sp. M21]
Length = 230
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L ++++ +A+ A R D+V LVAVSK + I A +CGQ IF EN +QE
Sbjct: 1 MSVAENLGKIRERVRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+ FIG+LQSNKV +I + D+I +V R A+ + + +
Sbjct: 61 LVGKQAE--LPKDISWHFIGNLQSNKVRQITGMVDLIHSVDRLSLATEIDRQWGALGKVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E K G + V + L V GLM +PP +P +P+F L
Sbjct: 119 EVLIQVNISQEETKGGTSSEELFQLVRDAAKLPNLRVVGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ARE ++ +LSMGM+ DFE AI GAT VR+GS +FGER +
Sbjct: 179 RELARELEAAAIPGVEMRELSMGMSGDFEAAIEEGATLVRVGSALFGERQYR 230
>gi|86359693|ref|YP_471585.1| hypothetical protein RHE_CH04115 [Rhizobium etli CFN 42]
gi|86283795|gb|ABC92858.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 219
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 115/219 (52%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ IF EN++QE
Sbjct: 1 MDLQERLNDVRSRIAAGERQAGRPAGSVQLVAVSKTFEAEAIRPAIDAGQRIFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|218672950|ref|ZP_03522619.1| hypothetical protein RetlG_15628 [Rhizobium etli GR56]
Length = 219
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 114/219 (52%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ G IF EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERQAGRPAGSVRLVAVSKTFEAEAIRPAIEAGLRIFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPALKAEHPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRGELGLLIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|222150238|ref|YP_002551195.1| hypothetical protein Avi_4380 [Agrobacterium vitis S4]
gi|221737220|gb|ACM38183.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 219
Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats.
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L + +I +A A R ++V+LVAVSK D++ IR + GQ +F EN++QE
Sbjct: 1 MTIEERLDEVRTRIAAAAQEADRTPEAVTLVAVSKTFDAEAIRPVILHGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + +++L IG LQSNK +E V+LFDVIETV REK A L+ EM KQ R
Sbjct: 61 SQGKWPELKAETPEIELHLIGPLQSNKAAEAVALFDVIETVDREKIARALAEEMAKQGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P +TK FV LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPQETKAFVDLCRSELGLEIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A EC +++LSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LAGECGVSRLSMGMSGDYETAIAFGATSVRVGSAIFGHR 219
>gi|325294117|ref|YP_004279981.1| alanine racemase protein [Agrobacterium sp. H13-3]
gi|325061970|gb|ADY65661.1| putative alanine racemase protein [Agrobacterium sp. H13-3]
Length = 219
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 114/219 (52%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ +Q+I +A + R VSLVAVSK D+++I+ + GQ +F EN++QE
Sbjct: 1 MEIEARLEDVRQRIAETAEKSGRKATDVSLVAVSKTFDAQEIQPVIDSGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW K ++L IG LQSNK ++ V+LFDV+++V REK A LS E +KQ R
Sbjct: 61 AQGKWPALKEKTSGIELHLIGPLQSNKAADAVALFDVVQSVDREKIARALSEECVKQGRS 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L Y+QVNTG E QK+GI P +T FV CR + +L+VEGLMCIPPA NP PHF LL++
Sbjct: 121 LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLSVEGLMCIPPADENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+C L KLSMGM+ DFE AI GATSVR+GS IFG R
Sbjct: 181 LARQCGLEKLSMGMSGDFETAIEFGATSVRVGSAIFGAR 219
>gi|197119080|ref|YP_002139507.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
bemidjiensis Bem]
gi|197088440|gb|ACH39711.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
bemidjiensis Bem]
Length = 230
Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats.
Identities = 86/232 (37%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I +A+ A R D+V LVAVSK + I A +CGQ IF EN +QE
Sbjct: 1 MSVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++ FIG+LQSNKV +I + D+I +V R A+ + + +
Sbjct: 61 LVGKKGE--LPPEISWHFIGNLQSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E K G ++ V + L V GLM +PP +P +P+F L
Sbjct: 119 EVLIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+AR+ + + +LSMGM+ DFE AI GAT VR+GS +FGER +
Sbjct: 179 RELARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR 230
>gi|15889996|ref|NP_355677.1| hypothetical protein Atu2747 [Agrobacterium tumefaciens str. C58]
gi|15157965|gb|AAK88462.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 220
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 111/219 (50%), Positives = 148/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ +Q+I + A + R V+LVAVSK D++ I+ + GQ +F EN++QE
Sbjct: 2 MEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQE 61
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW K D++L IG LQSNK ++ V+LFDV+E++ REK A LS E +Q R
Sbjct: 62 AQGKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRS 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L Y+QVNTG E QK+GI P +T FV CR + +L VEGLMCIPPA NP PHF LL++
Sbjct: 122 LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLMCIPPAEENPGPHFALLAK 181
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L KLSMGM+ DFE A+ GATSVR+GS IFG R
Sbjct: 182 LAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR 220
>gi|218510282|ref|ZP_03508160.1| putative alanine racemase protein [Rhizobium etli Brasil 5]
Length = 219
Score = 195 bits (495), Expect = 4e-48, Method: Composition-based stats.
Identities = 115/219 (52%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + KI A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSKIAAGERAAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRGELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|163757457|ref|ZP_02164546.1| hypothetical protein HPDFL43_18642 [Hoeflea phototrophica DFL-43]
gi|162284959|gb|EDQ35241.1| hypothetical protein HPDFL43_18642 [Hoeflea phototrophica DFL-43]
Length = 226
Score = 194 bits (492), Expect = 8e-48, Method: Composition-based stats.
Identities = 107/221 (48%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L I ++ A RP SV LVAVSK ++IR ++ G+ +F EN++QE
Sbjct: 5 MDATKNLAKVLADIADAETSAGRPAGSVGLVAVSKTKPVEEIRPVIAAGRRVFGENRVQE 64
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW + D++L IG LQSNK ++ V+LFDVI+TV REK A ++ E+ KQ R
Sbjct: 65 AQSKWPQLKAETPDLELHLIGPLQSNKTADAVALFDVIQTVDREKIAREIAREIKKQGRA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI P+ FV LCR + L + GLMCIPP NP PHF LL+
Sbjct: 125 PGLFIQVNTGSEPQKAGIEPDAAAAFVDLCRSELGLTIRGLMCIPPFDENPGPHFALLAN 184
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IARE L +LSMGM+ D+ +AIA GAT VR+GS IFG R
Sbjct: 185 IAREAGLEELSMGMSDDYPIAIAFGATQVRVGSAIFGARNT 225
>gi|78222116|ref|YP_383863.1| hypothetical protein Gmet_0896 [Geobacter metallireducens GS-15]
gi|78193371|gb|ABB31138.1| protein of unknown function UPF0001 [Geobacter metallireducens
GS-15]
Length = 231
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 81/232 (34%), Positives = 114/232 (49%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++I A A R +SV LVAVSK ++ + A GQ +F EN +QE
Sbjct: 1 MTIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R+ V+ FIG+LQSNKV +I L +I +V R A + + K
Sbjct: 61 FTAKAGEVREP--VEWHFIGALQSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSG + V L V GLM +PP +P+ E+
Sbjct: 119 DVLIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMTMPPFFDDPEGARPYFREL 178
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
R + +LSMGM+ DFE A+ GAT VRIG+ +FGER +
Sbjct: 179 KRLAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYR 230
>gi|33326392|gb|AAQ08613.1| hypothetical protein [Agrobacterium vitis]
Length = 219
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 116/219 (52%), Positives = 153/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L + +I +A A R ++V+LVAVSK D+ IR + GQ +F EN++QE
Sbjct: 1 MTIEERLDEVRTRIAAAAEDADRNPEAVTLVAVSKTFDADAIRPVILHGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + ++L IG LQSNK SE V+LFDVIETV REK A L+ EM KQ R
Sbjct: 61 SQGKWPELKAETPGIELYLIGPLQSNKASEAVALFDVIETVDREKIARALAEEMAKQGRL 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P +TK FV+LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPQETKAFVVLCRSELGLEIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A EC +++LSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LAGECGVSRLSMGMSGDYETAIAFGATSVRVGSAIFGHR 219
>gi|188996752|ref|YP_001931003.1| alanine racemase domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931819|gb|ACD66449.1| alanine racemase domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 230
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++I+ + R ++ V L+A SK +KI A G F ENK+QE
Sbjct: 1 MSIKENVLKIEERIQKACDKVGRKREEVILLAASKTQPVEKIIEAYESGIRYFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L++ D+ IG LQ+NKV V +++I +V R+ + K ++ +
Sbjct: 61 GIEKIEKLKEYADIHWHLIGGLQTNKVKYAVKYYELIHSVDRQALVDEIEKRGEKLNKVI 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
I+VN E K G+ + K+ K + + GLM IPP NP +P+F L
Sbjct: 121 DGLIEVNF-GEESKFGVKKDNLKELFEYILTKKYIKIHGLMAIPPYFENPEDVRPYFIKL 179
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ KL+ LSMGM+ DFE+AI GAT VRIG+ IFGER
Sbjct: 180 RTLRDNLEKEYNVKLSHLSMGMSHDFEVAIEEGATIVRIGTAIFGERNY 228
>gi|225419736|ref|ZP_03762039.1| hypothetical protein CLOSTASPAR_06074 [Clostridium asparagiforme
DSM 15981]
gi|225041626|gb|EEG51872.1| hypothetical protein CLOSTASPAR_06074 [Clostridium asparagiforme
DSM 15981]
Length = 227
Score = 193 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ ++++ + + A R SV+L+AVSK ++ ++ A G F ENK+QE
Sbjct: 1 MMIKEQLEEVRERVNAACLRAGRDPKSVTLIAVSKTKPAQAVQEAYEAGARDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ IG LQ NKV +++ +I V + A + E K++ +
Sbjct: 61 ILQKQPA--LPQDIRWHMIGHLQRNKVHQVIGKAVLIHAVDSLRLAEQIEQEAAKRNLDV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +++N E K G ++ + ++++GLM I P + NP+ + + ++
Sbjct: 119 DVLLEINVAKEESKYGFFLEDAEEAIRQISSLPHVHIKGLMTIAPFVENPEENRGIFQKL 178
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AI GAT VR+G+ IFG R
Sbjct: 179 YQFSVDINDKNIDNVTMGVLSMGMSGDFEVAIEEGATMVRVGTSIFGAR 227
>gi|116254455|ref|YP_770293.1| racemase [Rhizobium leguminosarum bv. viciae 3841]
gi|115259103|emb|CAK10214.1| putative racemase [Rhizobium leguminosarum bv. viciae 3841]
Length = 219
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK ++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERAAGRPAGSVQLVAVSKTFEADAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q++
Sbjct: 61 SQGKWPALKAEHQDIKLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQAKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGTR 219
>gi|229824759|ref|ZP_04450828.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
49176]
gi|229791088|gb|EEP27202.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
49176]
Length = 231
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + + KI + A R +D V L+AVSK + IR A+ G F EN++QE
Sbjct: 1 MSITENLSMVENKIAAACKRAGRERDEVKLIAVSKTQPVEAIREAIEYGINSFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K ++ D IG LQ+NKV +V +I ++ + A L E K +
Sbjct: 61 LREKTEIIKDNLD--WHLIGHLQTNKVKYVVGKVSLIHSLENIRLAEALDKEAAKLGITV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++N E K G+ P ++F+ + +N++GLM + P + + ++
Sbjct: 119 DVLAEINVAKEASKFGVNPEDAENFIREVSKFPNINIKGLMTVAPYTDISEENRKYFRQL 178
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 179 KKIMVDLNSKNIHNVSMNVLSMGMTGDYEVAIEEGATLVRVGTGIFGSRNY 229
>gi|222087921|ref|YP_002546459.1| hypothetical protein Arad_4934 [Agrobacterium radiobacter K84]
gi|221725369|gb|ACM28525.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 219
Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 112/219 (51%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + I + A RP +V LVAVSK D+ IR A+S GQ +F EN++QE
Sbjct: 1 MELQERLNEVRSHIAVAERQAGRPGGAVQLVAVSKTFDADAIRPAISAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ E+ +Q +
Sbjct: 61 SQGKWPALKAETPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALADEIKRQGKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPDDTVAFVDLCRNELGLSIEGLMCIPPADENPGPHFGLLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + KLSMGM+ D+E+A+A GATSVR+GS IFG R
Sbjct: 181 LARKAGVDKLSMGMSSDYEIAVAFGATSVRVGSAIFGAR 219
>gi|218778253|ref|YP_002429571.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759637|gb|ACL02103.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
AK-01]
Length = 233
Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 119/231 (51%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +++I+ +A R S+ LVAVSK ++ +R A + G IF EN +QEA
Sbjct: 4 TISKNLQEIQERIQKAAEECGRDPQSIRLVAVSKTKPAEMLRQAAAAGATIFGENYIQEA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L DV+ FIG LQSNK V LF +I +V K A + + K +
Sbjct: 64 REKIAELESL-DVEWHFIGHLQSNKAKYAVPLFSLIHSVDSFKLAGEIDKQAAKAGKIQD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E KSG + V + V+GLM +PP +P +P F L
Sbjct: 123 ILVQVNISGEETKSGTADEEAATLVKEISALENVRVKGLMTMPPFFDDPDRARPFFRRLR 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+A+ + + +LSMGMT DFE AI GAT VR+G+ IFG R
Sbjct: 183 ELAQAIQNKGFKNVSMEELSMGMTGDFEAAIEEGATLVRVGTAIFGARNYN 233
>gi|145639591|ref|ZP_01795195.1| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII]
gi|145271382|gb|EDK11295.1| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII]
gi|309750493|gb|ADO80477.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
Length = 237
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPGEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|16272064|ref|NP_438263.1| hypothetical protein HI0090 [Haemophilus influenzae Rd KW20]
gi|260580606|ref|ZP_05848433.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1723862|sp|P44506|Y090_HAEIN RecName: Full=UPF0001 protein HI_0090
gi|1573041|gb|AAC21768.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092668|gb|EEW76604.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 237
Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
L V IQ+N E KSGI P + L + GLM IP N
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQENAFRK 180
Query: 179 --EIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|68248701|ref|YP_247813.1| hypothetical protein NTHI0168 [Haemophilus influenzae 86-028NP]
gi|68056900|gb|AAX87153.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
Length = 237
Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK +I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISEILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|209551494|ref|YP_002283411.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537250|gb|ACI57185.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 219
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 113/219 (51%), Positives = 148/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D+ L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAERPDIVLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|145637682|ref|ZP_01793336.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittHH]
gi|145269142|gb|EDK09091.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittHH]
Length = 237
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQETVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|197284237|ref|YP_002150109.1| amino acid racemase [Proteus mirabilis HI4320]
gi|227357860|ref|ZP_03842208.1| amino acid racemase [Proteus mirabilis ATCC 29906]
gi|194681724|emb|CAR40875.1| putative amino acid racemase [Proteus mirabilis HI4320]
gi|227161970|gb|EEI46988.1| amino acid racemase [Proteus mirabilis ATCC 29906]
Length = 232
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 104/229 (45%), Gaps = 9/229 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L + I+ +A R D ++L+AVSK I A++CGQ F EN +Q
Sbjct: 1 MNTIKQNLVNVRSHIDTAAQKCGRSPDEITLLAVSKTKPVSDIEKAIACGQTEFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + ++ FIG LQSNK + F T+ R K A LS +
Sbjct: 61 EGVDKISYFAENKNLVWHFIGPLQSNKTRLVAEHFAWCHTIDRLKIAQRLSDQRPTTLPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + GLM IP + +L +
Sbjct: 121 LNVLIQINISDENSKSGISLTELDGLAAQISILPGIKLRGLMAIPAPENDYNKQVEVLEK 180
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K + LSMGMT D E AIA G+T VRIG+ IFG R
Sbjct: 181 MHQAFKQLQNQYPDIDTLSMGMTGDMEAAIACGSTLVRIGTAIFGARDY 229
>gi|166031848|ref|ZP_02234677.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
27755]
gi|166028301|gb|EDR47058.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
27755]
Length = 244
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +QKI+ + + R + V+L+AVSK ++ ++ A G +F ENK+QE
Sbjct: 12 LKENLENVEQKIQAACERSGRDRSEVTLIAVSKTKPAEMVQEAYDLGIRLFGENKVQEIM 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ IG LQ NK+ I+ D+I +V + A + E K+ V
Sbjct: 72 DKSE--VLPADIHWHMIGHLQRNKIKYIIDKVDLIHSVDSLRLAEAIEKEAAKKHVIAKV 129
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN G E K G +P + DFV + GLM P + NP+ + + +E+ +
Sbjct: 130 LIEVNVGREESKFGFLPEELDDFVEKASDFSHIQFMGLMTSAPFVDNPEENRPIFAELRK 189
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+E+AI GAT VR+G+ IFG R
Sbjct: 190 LSVDIARKNAHNMSMSILSMGMTNDYEVAIEEGATMVRVGTAIFGARNY 238
>gi|319790041|ref|YP_004151674.1| alanine racemase domain protein [Thermovibrio ammonificans HB-1]
gi|317114543|gb|ADU97033.1| alanine racemase domain protein [Thermovibrio ammonificans HB-1]
Length = 228
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++IE +A+ A R + V L+A SK ++I+ A G +F EN++QE
Sbjct: 1 MGIRENVEKVLKQIEEAALRAGRRPEEVKLLAASKTRTPQEIKEAYEAGVKLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K P + Q IG LQ+NKV V LFD IE+V RE L + ++ + +
Sbjct: 61 AREKI-PQLADLKAQWHMIGHLQTNKVKYAVKLFDCIESVDREGLVEELQKRLSREGKVM 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PV I+V E K G +P + L ++GLM +PP +P+ +E+
Sbjct: 120 PVLIEVKLSPEESKHGCLPQELPRLTEKVLNSPNLKLKGLMTVPPYFEDPEKVRPYFAEL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
R + +L +LSMGM+ DF +A+ GAT VR+G+ IFG R
Sbjct: 180 RRLRDELQEKFKVELPELSMGMSHDFPVAVEEGATIVRVGTAIFGPRNY 228
>gi|145633703|ref|ZP_01789429.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
3655]
gi|145635487|ref|ZP_01791187.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
gi|144985463|gb|EDJ92284.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
3655]
gi|145267252|gb|EDK07256.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
Length = 237
Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|156307500|ref|XP_001617643.1| hypothetical protein NEMVEDRAFT_v1g225918 [Nematostella vectensis]
gi|156194985|gb|EDO25543.1| predicted protein [Nematostella vectensis]
Length = 228
Score = 191 bits (484), Expect = 7e-47, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 107/228 (46%), Gaps = 7/228 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A ++R S+ L+AVSK ++ IR A + G F EN LQ
Sbjct: 1 MSTIAENIAKVGVRIREAAQASQRDCGSIGLLAVSKTKPAEAIRQAFAAGTRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K + L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALEKQVELSDL-PLTWHFIGPIQSNKTKPIAEHFAWVHSVDRLKIAQRLSDQRPAHLPA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P++ Q L + GLM IP +P +
Sbjct: 120 LNICLQVNVSGEASKSGCNPDELPALAQAVTQLPNLCLRGLMTIPEPTDDPVEQRAAFAR 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ L LSMGM+ D E AIA GAT VRIG+ +FG R T
Sbjct: 180 LRELQQDLNLDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDYST 227
>gi|241206932|ref|YP_002978028.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240860822|gb|ACS58489.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 219
Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats.
Identities = 113/219 (51%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I + A RP SV LVAVSK ++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLDDVRSRIAAAEREAGRPAGSVQLVAVSKTFEADAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D+ L IG LQSNK ++ V LFDVIETV REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAEHQDIALHLIGPLQSNKAADAVVLFDVIETVDREKIARALAEEMRRQGKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+ AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYGTAIAFGATSVRVGSAIFGTR 219
>gi|145642000|ref|ZP_01797572.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
R3021]
gi|148825633|ref|YP_001290386.1| hypothetical protein CGSHiEE_02835 [Haemophilus influenzae PittEE]
gi|145273271|gb|EDK13145.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
22.4-21]
gi|148715793|gb|ABQ98003.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittEE]
gi|309972778|gb|ADO95979.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
Length = 237
Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLILAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|319775029|ref|YP_004137517.1| hypothetical protein HICON_03630 [Haemophilus influenzae F3047]
gi|329123064|ref|ZP_08251635.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
11116]
gi|317449620|emb|CBY85826.1| conserved hypothetical protein [Haemophilus influenzae F3047]
gi|327471995|gb|EGF17435.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
11116]
Length = 237
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQEVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAMFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|225572134|ref|ZP_03780998.1| hypothetical protein RUMHYD_00428 [Blautia hydrogenotrophica DSM
10507]
gi|225040400|gb|EEG50646.1| hypothetical protein RUMHYD_00428 [Blautia hydrogenotrophica DSM
10507]
Length = 244
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++KIE + I + R V+L+AVSK + ++ A G F ENK+QE
Sbjct: 16 LSENLRDVEKKIEGACIRSGRNPKEVTLIAVSKTKPVEMLQEAYDAGAREFGENKVQEIT 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ NKV IV +I +V + A + E K++ +PV
Sbjct: 76 AKYDQ--LPQDIHWHMIGHLQRNKVKYIVDKVKMIHSVDSLRLAETIDKEAQKKNVVVPV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + + + + V+GLM + P + NP+ + + + +
Sbjct: 134 LIEVNVAEEDSKFGLSLEEVVSLIEAVSKLPNVRVQGLMTVAPFVENPEENREIFRSLKK 193
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 194 LSVDITAKNINNVTMSVLSMGMTNDYEVAIEEGATMVRVGTGIFGARDYS 243
>gi|15967083|ref|NP_387436.1| hypothetical protein SMc02812 [Sinorhizobium meliloti 1021]
gi|307302545|ref|ZP_07582302.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
gi|307316124|ref|ZP_07595568.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|15076356|emb|CAC47909.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306897964|gb|EFN28706.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|306903215|gb|EFN33805.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
Length = 219
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A RP+++VSLVAVSK D++ IR + GQ +F EN++QE
Sbjct: 1 MEVEERLNEVLSRIRASEKSANRPENTVSLVAVSKTFDAETIRPVIEAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW R+ D++L IG LQSNK ++ V+LFDVIET+ REK A ++ EM +Q R
Sbjct: 61 AQAKWPALKRETPDIELHLIGPLQSNKAADAVALFDVIETIDREKIARAVAAEMKRQGRD 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P FV LCR + LN+EGLMCIPP NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPEDAAAFVALCRDELALNIEGLMCIPPFDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L++LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 181 LAGQCGLSRLSMGMSGDFETAIAFGATGVRVGSAIFGAR 219
>gi|225849671|ref|YP_002729905.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
EX-H1]
gi|225646566|gb|ACO04752.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
EX-H1]
Length = 228
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ I SA + R + + L+A SK +KI+ A G F EN++QE
Sbjct: 1 MSIRENVERIREIIYRSAERSGRDPEEIILLAASKTQPVEKIKEAYEAGVRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L++ D+ IG LQ+NK V F++I ++ RE A L K +
Sbjct: 61 GIKKIEQLKEIRDIHWHLIGGLQTNKAKYAVRYFELIHSLDRESLADELDKRARKIGKKQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V I+VN G E K G+ P + +K + + GLMCIPP +P+F L
Sbjct: 121 DVLIEVNIGEEETKYGVKPENLEKLFEYSIKKENIRILGLMCIPPYFEDKERSRPYFVRL 180
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + KL LSMGM+ DF++A+ GAT VRIG+ IFGER
Sbjct: 181 REMKEKLERDFGVKLPHLSMGMSHDFDVAVEEGATIVRIGTAIFGER 227
>gi|260581995|ref|ZP_05849790.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
NT127]
gi|260094885|gb|EEW78778.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
NT127]
Length = 237
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ+ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQIAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIAERLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSG+ P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|296445413|ref|ZP_06887371.1| alanine racemase domain protein [Methylosinus trichosporium OB3b]
gi|296257174|gb|EFH04243.1| alanine racemase domain protein [Methylosinus trichosporium OB3b]
Length = 223
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 133/221 (60%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L+ + I A R ++LV VSK + + L G +F ENK+QE
Sbjct: 1 MTIVDRLKAAEHAIAERARDCGRDPAEITLVCVSKTFPGEAVIPLLEAGHRVFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW PLR+ + V+L IG LQSNK E V FDVIE+V R K A ++ E+ +Q R
Sbjct: 61 ARAKWGPLRERFPVELHLIGPLQSNKAREAVETFDVIESVDRPKIAEAIAAEIARQGRRP 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNTG E QK+G+ P + F+ CR+++ L + GLMC+PP PHF LL+ I
Sbjct: 121 RLLVQVNTGEEPQKAGVRPQEADAFIKQCREQFGLEIAGLMCVPPVDQQASPHFALLAAI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR L LSMGM+ D+ELAI GAT VRIGS I GER
Sbjct: 181 ARRNGLKDLSMGMSADYELAIQLGATHVRIGSAIMGERDYS 221
>gi|225027659|ref|ZP_03716851.1| hypothetical protein EUBHAL_01918 [Eubacterium hallii DSM 3353]
gi|224954973|gb|EEG36182.1| hypothetical protein EUBHAL_01918 [Eubacterium hallii DSM 3353]
Length = 230
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I+ + R + V+LVAVSKM I L GQ+ + EN +QE
Sbjct: 2 LKENLKNVQNNIKKACERVGRKPEEVTLVAVSKMKPLSDIEELLETGQLEYGENYVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + K V IG LQ+NKV I+ ++I +V A + E +K+ +
Sbjct: 62 DKYENISKP--VHWHMIGHLQTNKVKYIIDKVELIHSVDSLHLAKQIEKEAVKKGVDAQI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E K GI + V + +++ GLM P + NP+ + ++ +
Sbjct: 120 LVQVNIAQEDTKFGIDGPEVMSLVEEISKFPHVHIRGLMTSAPFVANPEENRCYFKKLHK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LFVDIREKNIDNVSMDILSMGMTNDYEVAIEEGATMVRVGTGIFGARNYN 229
>gi|325661586|ref|ZP_08150210.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084855|ref|ZP_08333943.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472113|gb|EGC75327.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410949|gb|EGG90371.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 233
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + K++++ + R + V+L+AVSK ++ G F ENK+QE
Sbjct: 2 LEKNLKSIQDKVKDACKRSGRHPEDVTLIAVSKTKPVSMLQEIYDLGIRQFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ NKV ++ +I +V + A + E K++ + V
Sbjct: 62 DKYEK--LPKDISWHMIGHLQRNKVKYLIGKTTLIHSVDSLRLAEAIEAEAAKKNCLVDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K GI P + V + + ++GLM I P + NP+ + + + +
Sbjct: 120 LIEVNVAGEESKFGISPEEVLPLVEQIARFRHIKIKGLMTIAPFVENPEENRIHFANLRK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNIDNVSMRILSMGMTNDYEVAIEEGATMVRVGTGIFGERNYN 229
>gi|302671116|ref|YP_003831076.1| alanine racemase domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302395589|gb|ADL34494.1| alanine racemase domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 230
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L++ + I+++ A R + V+L+AVSK IR A++CG +F ENK+QE +
Sbjct: 2 IKENLEMVEANIQSACKRAGRDRSEVTLIAVSKTKPVSDIREAMACGIKVFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + + IG LQ+NKV + + +I +V K A + + K + V
Sbjct: 62 DKTAEITEP--LSWHMIGHLQANKVKYLPGVACMIHSVDNVKLADEIEKQAAKHDIVMDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN +E K GI P++ DFV +N+ GLM I P NP+ +F L E
Sbjct: 120 LVEVNMAHEDTKFGISPDEAADFVKEISVNKHINIRGLMTIAPYTENPESNRVYFKGLRE 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 180 LKDKINAMNISGVHMDTLSMGMTGDYEVAIEEGATFVRVGTGIFGERNYS 229
>gi|307132430|ref|YP_003884446.1| putative enzyme [Dickeya dadantii 3937]
gi|306529959|gb|ADM99889.1| predicted enzyme [Dickeya dadantii 3937]
Length = 244
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 19/241 (7%)
Query: 1 MSL--------GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI 52
M++ LQ +Q+I +A R + ++L+AVSK I A++ GQ
Sbjct: 1 MTISTVTTSVVQQNLQDVRQRISAAAERCGRAPEEITLLAVSKTKPVSAIEEAIAAGQRA 60
Query: 53 FAENKLQ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
F EN +Q + + + + + ++ FIG LQSNK + FD T+ R + A L
Sbjct: 61 FGENYVQEGVDKVRHFQAAQPDTQLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRL 120
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
S + L V +QVN E KSGI+ L + GLM IP +
Sbjct: 121 SEQRPAHLPPLNVLLQVNISQEQSKSGILARDLSGLAASVAHLPNLRLRGLMAIPAPETD 180
Query: 170 PKPH---FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F ++E+ + K L LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 181 HARQLAVFRQMTELFLQLKADYGTLDTLSMGMTDDMAAAIEAGSTLVRIGTAIFGARDYS 240
Query: 222 T 222
+
Sbjct: 241 S 241
>gi|220916555|ref|YP_002491859.1| alanine racemase domain protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954409|gb|ACL64793.1| alanine racemase domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 223
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 75/220 (34%), Positives = 111/220 (50%), Gaps = 10/220 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L + + V+LVAVSK + IR A + GQ F EN QE
Sbjct: 1 MTIADRLAAIRADL----------PAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L ++ FIG LQ+NK + ++ V RE+ A+ LS ++
Sbjct: 51 WRAKADALADLPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN G E K G P++ + R + + GLMCIPP +P+PHF L +
Sbjct: 111 RVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDPRPHFRALRAL 170
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D+ +A+ GAT VR+GS IFG RP
Sbjct: 171 RDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARPP 210
>gi|83648989|ref|YP_437424.1| TIM-barrel fold family protein [Hahella chejuensis KCTC 2396]
gi|83637032|gb|ABC32999.1| predicted enzyme with a TIM-barrel fold [Hahella chejuensis KCTC
2396]
Length = 227
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 114/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + ++ Q+I+N+ A RP DSV+L+AVSK ++ IR A G F EN LQEA
Sbjct: 3 SIADNIKTVSQRIQNATKSAARPADSVTLLAVSKTKPAEAIRAAYDAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + FIG LQSNK + LF + T+ REK A LS + + + L
Sbjct: 63 QDKIAQLSNLA-ITWHFIGPLQSNKTRPVAELFQWVHTLDREKIARRLSEQRPEGTPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSG+ P + + L + GLMCIP + E+
Sbjct: 122 VCIQVNINDESSKSGVTPGEIAPLAEIVSALPGLRLRGLMCIPDPSQGDEALASTFKELN 181
Query: 182 RECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R LSMGM+ D E AIA+G+T VRIGS IFG R
Sbjct: 182 RHFAALQSRFDSVDTLSMGMSDDMEAAIAAGSTIVRIGSAIFGARN 227
>gi|152978475|ref|YP_001344104.1| alanine racemase domain-containing protein [Actinobacillus
succinogenes 130Z]
gi|150840198|gb|ABR74169.1| alanine racemase domain protein [Actinobacillus succinogenes 130Z]
Length = 232
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ Q+I + + A R K +V L+AVSK I+ A+ GQ F EN +QE
Sbjct: 1 MTIRQNLEHIHQQIGQACLAAGRDKSAVKLLAVSKTKPVTDIQAAIDAGQRAFGENYVQE 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQFFAHKYPELEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNDQRPADKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---L 176
L V IQ+N E KSGI P + + L + GLM IP +
Sbjct: 121 LNVLIQINISDESSKSGIQPQEMAALAKHIENRPHLCLRGLMAIPAPTDDIAEQEKALTA 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ + + + LSMGMT D A+ G+T VRIG+ IFG R
Sbjct: 181 MKKLFEQLQTLCPNRPIDTLSMGMTNDMASAVKCGSTMVRIGTAIFGARNY 231
>gi|258543383|ref|YP_003188816.1| hypothetical protein APA01_23230 [Acetobacter pasteurianus IFO
3283-01]
gi|256634461|dbj|BAI00437.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
gi|256637519|dbj|BAI03488.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
gi|256640571|dbj|BAI06533.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
gi|256643628|dbj|BAI09583.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
gi|256646683|dbj|BAI12631.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
gi|256649736|dbj|BAI15677.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
gi|256652724|dbj|BAI18658.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655780|dbj|BAI21707.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
Length = 232
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 95/220 (43%), Positives = 134/220 (60%), Gaps = 1/220 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L +Q I+ SA A R SV+LVAVSK + ++ AL+ GQ +F EN++QEA
Sbjct: 12 LADRLAAVRQNIDASAHAAGRDPASVTLVAVSKFHPLESVQEALAAGQRVFGENRVQEAA 71
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ D++L IG LQ+NK + V + DVIE++ R + A L K+ R
Sbjct: 72 SKFPALRATYPDLRLHLIGGLQTNKARDAVRIADVIESLDRPELAEALLKAADKEGRLPE 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VNTG E QK G+ + F+ CRQ++ ++GLMCIPPAM +P PHF LL +A
Sbjct: 132 LLIEVNTGDEPQKFGVPREKADSFIRTCRQQFGDKLQGLMCIPPAMQDPVPHFRLLRSMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+E L +SMGM+ D+ AIA GAT VR+G+ IFG RP
Sbjct: 192 QEHGLPVISMGMSADYPQAIAEGATLVRVGTAIFGPRPPS 231
>gi|21674628|ref|NP_662693.1| hypothetical protein CT1814 [Chlorobium tepidum TLS]
gi|21647829|gb|AAM73035.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 229
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I + A R +D V+L+AVSK + IR A GQ F E+ +QE
Sbjct: 3 SISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQEF 62
Query: 62 KKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P V FIG LQSNKV +IV ++ + + TA LS + +
Sbjct: 63 LEKVEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VN E K G P+ C + + GLM I PA + F L +
Sbjct: 123 DYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLRGLMTIASPAPSEARREFAELRQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LT+LSMGM+ DFE AI GAT +RIG+ IFG R
Sbjct: 183 TLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR 229
>gi|251788397|ref|YP_003003118.1| alanine racemase domain-containing protein [Dickeya zeae Ech1591]
gi|247537018|gb|ACT05639.1| alanine racemase domain protein [Dickeya zeae Ech1591]
Length = 241
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ +QKI +A R ++L+AVSK I A++ GQ F EN +Q
Sbjct: 10 TVRQNLQDVRQKISAAAQCCGRDPQEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 69
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + + ++ FIG LQSNK + FD T+ R + A LS +
Sbjct: 70 VDKVRYFQTHQPDTALEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPPHLP 129
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFY 175
L V +QVN E KSGI ++ + Q L + GLM IP F
Sbjct: 130 PLNVLLQVNISREASKSGIPADELAELAASVAQLPNLRLRGLMAIPAPETEHARQLAIFR 189
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++E+ + K L LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 190 QMTELFLQLKADYGTLDTLSMGMTDDMAAAIEAGSTMVRIGTAIFGARDYP 240
>gi|260587699|ref|ZP_05853612.1| pyridoxal phosphate enzyme, YggS family [Blautia hansenii DSM
20583]
gi|260541964|gb|EEX22533.1| pyridoxal phosphate enzyme, YggS family [Blautia hansenii DSM
20583]
Length = 231
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++++E + A R ++ V+L+AVSK I L F ENK+QE
Sbjct: 1 MSVCENYKEVEKRVEEACKRAGRKREEVTLIAVSKTKPVSMIEELLPLNVRDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + IG LQ NKV IV +I +V + A +S K+
Sbjct: 61 LTAKAEILPSA--LHWHMIGHLQRNKVKYIVDKACIIHSVDSLRLAEEISKAAQKKQVTA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+VN E K G+ ++ + + ++GLM I P + NP+ + ++ ++
Sbjct: 119 KILIEVNVAEEESKFGVRTSELLPLIEAISLLPNIAIKGLMTIAPYVENPEENRWIFQKL 178
Query: 181 -----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 179 KNLSIDIKGKNFDNVTMDVLSMGMTGDYEVAIEEGATHVRVGTGIFGERNY 229
>gi|332974663|gb|EGK11580.1| YggS family pyridoxal phosphate enzyme [Kingella kingae ATCC 23330]
Length = 230
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N +Q++ +A+ A+R S+ L+AVSK + I + GQ F EN +QE
Sbjct: 1 MNLANNYAATQQRLVQAALAAQRDPSSLQLIAVSKTFPTDDIHAVYALGQRDFGENYIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ IG++QSNK + + T+ K A LS + Q L
Sbjct: 61 WWQKTEQLADCGDLVWHIIGNVQSNKSRLVAERAHWLHTLDSVKLARRLSTQRPAQLPDL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V I++N EI K GI P Q D +L + GLMC+ A + F +
Sbjct: 121 QVCIEINIANEINKHGIAPEQMLDLAHEVMALPKLKLRGLMCVAQANVGDDVLQQQFGRM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ ++ + LSMGM+ D E A+A GAT VR+G+ IFG R
Sbjct: 181 NDLLQQLRQIAPDADTLSMGMSGDLECAVACGATMVRVGTAIFGGRSY 228
>gi|319896535|ref|YP_004134728.1| hypothetical protein HIBPF01320 [Haemophilus influenzae F3031]
gi|317432037|emb|CBY80385.1| conserved hypothetical protein [Haemophilus influenzae F3031]
Length = 233
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK +I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISEILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARDYS 232
>gi|315181245|gb|ADT88159.1| hypothetical protein vfu_A03051 [Vibrio furnissii NCTC 11218]
Length = 235
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +IEN+ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNLEHITSQIENAQQKCGRSRSSVQLLAVSKTKPVEAILEAAEAGQRAFGENYVQEG 62
Query: 62 K---KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E D++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 CDKVQFFAEHHPELDLEWHFIGPLQSNKTRLIAEHFDWMHTIDRAKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ N L L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVSENDLFTLAELISGLPNLTLRGLMSIPENVPDYASQLAAFR 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + + LSMGM+ D AI +G+T VRIG+ IFG+R
Sbjct: 183 QLAALKDQLAEKYDGIDTLSMGMSGDMAAAIEAGSTIVRIGTAIFGQRDYP 233
>gi|218132469|ref|ZP_03461273.1| hypothetical protein BACPEC_00328 [Bacteroides pectinophilus ATCC
43243]
gi|217992579|gb|EEC58581.1| hypothetical protein BACPEC_00328 [Bacteroides pectinophilus ATCC
43243]
Length = 230
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++ I + + R + V+L+AVSK I + G F ENK+QE
Sbjct: 2 LSDNLHEVQENIRKACERSGRNPEDVTLIAVSKTKPVSDIEQIYAAGIREFGENKVQEMN 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
D+ IG LQ NKV IV +I +V + A +S E +K++ + +
Sbjct: 62 D--KQKVLPGDINWHMIGHLQRNKVKYIVDNVAMIHSVDSVRLAEEISKEAVKKNVAVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G+ FV + +N++GLM P + NP+ + ++
Sbjct: 120 LVEVNVAKEESKFGLYTEDVGQFVEQISKLPGINIKGLMTSAPFVDNPEDNRQYFKKLKD 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 180 LSVDINAKNIDNVHMDFLSMGMTNDYVVAVEEGATHVRVGTAIFGHRDYN 229
>gi|229845488|ref|ZP_04465617.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
6P18H1]
gi|89892365|gb|ABD78959.1| HI0090-like protein [Haemophilus influenzae]
gi|229811591|gb|EEP47291.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
6P18H1]
Length = 233
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + QKIE + AKR +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIHQKIETACEEAKRNQNTVKLLAVSKTKPISAILSAYQAGQRTFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQDINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSG+ P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLMAIPAPTNKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFGARNYS 232
>gi|317493543|ref|ZP_07951964.1| YggS family pyridoxal phosphate enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918486|gb|EFV39824.1| YggS family pyridoxal phosphate enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 237
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 104/232 (44%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
++ L+ + +I +A R + V+L+AVSK I ++ GQ F EN +QE
Sbjct: 4 NIQQNLEAVRSRISAAAQDCGRSPEEVTLLAVSKTKPVSDIEETIAAGQRAFGENYVQEG 63
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + +++ FIG LQSNK + FD I TV R K A LS +
Sbjct: 64 VSKIQYFAQTPYADELEWHFIGPLQSNKSRLVAEHFDWIHTVDRVKIAQRLSEQRPADKA 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI V + L + GLM IP +P +
Sbjct: 124 ALNVLIQINISDESSKSGIDLEALDALVAQVAEMPNLRLRGLMAIPAPEEDPVKQKAVFD 183
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + LSMGMT D AI +G+T VRIG+ IFG R T
Sbjct: 184 RMEQAFLALKKQYPHIDTLSMGMTHDMAAAITAGSTMVRIGTAIFGARDYGT 235
>gi|312115572|ref|YP_004013168.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220701|gb|ADP72069.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
17100]
Length = 229
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 99/217 (45%), Positives = 140/217 (64%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++++ +A A R SV LVAV+K D++ IR L G V+F EN++QEA
Sbjct: 13 VEDAYLSIRERVWRAAQNAGRDPASVKLVAVTKTFDAEHIRPVLRQGHVLFGENRIQEAM 72
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+KW PLR+E+ +L IG +Q+NK E V+ FD IETV R K A+ L+ E+ KQ R
Sbjct: 73 RKWPPLREEFPRAELHVIGPIQTNKAREAVAFFDCIETVDRPKLAAALAQEIQKQGRAPK 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+++QVN G E QK+GI P++ FV C ++Y L++ GLMCIPP +P P F ++ +
Sbjct: 133 LFVQVNIGEEPQKAGIAPDEAAAFVRQCEREYGLSIAGLMCIPPFDDDPVPFFEKMAALR 192
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 193 KELGLLDLSMGMSGDFEAAIAAGATLVRVGSAIFGVR 229
>gi|260767465|ref|ZP_05876402.1| hypothetical protein VFA_000516 [Vibrio furnissii CIP 102972]
gi|260617577|gb|EEX42759.1| hypothetical protein VFA_000516 [Vibrio furnissii CIP 102972]
Length = 235
Score = 188 bits (477), Expect = 5e-46, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +IEN+ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNLEHITSQIENAQQKCGRSRSSVQLLAVSKTKPVEAILEAAEAGQRAFGENYVQEG 62
Query: 62 K---KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E +++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 CDKVQFFAEHHPELNLEWHFIGPLQSNKTRLIAEHFDWMHTIDRAKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ N L L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVSENDLFTLAELISSLPNLTLRGLMSIPENVPDYASQLAAFR 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + + LSMGM+ D AI +G+T VRIG+ IFG+R
Sbjct: 183 QLAALKDQLAEKYDGIDTLSMGMSGDMAAAIEAGSTIVRIGTAIFGQRDYP 233
>gi|148544413|ref|YP_001271783.1| alanine racemase domain-containing protein [Lactobacillus reuteri
DSM 20016]
gi|227363162|ref|ZP_03847296.1| TIM-barrel fold protein [Lactobacillus reuteri MM2-3]
gi|325682733|ref|ZP_08162249.1| proline synthetase associated protein [Lactobacillus reuteri
MM4-1A]
gi|148531447|gb|ABQ83446.1| alanine racemase domain protein [Lactobacillus reuteri DSM 20016]
gi|227071768|gb|EEI10057.1| TIM-barrel fold protein [Lactobacillus reuteri MM2-3]
gi|324977083|gb|EGC14034.1| proline synthetase associated protein [Lactobacillus reuteri
MM4-1A]
Length = 235
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 14/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKEVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNNFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK D+ IG LQ NKV I +I++V K + + E K R +
Sbjct: 61 LAKKHDE--LPADINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRII 118
Query: 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P+ I+VN G E K G+ P + Q + + GLM P +P+ +
Sbjct: 119 PILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFR 178
Query: 179 EI----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 179 RLRELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYS 231
>gi|217976529|ref|YP_002360676.1| alanine racemase domain protein [Methylocella silvestris BL2]
gi|217501905|gb|ACK49314.1| alanine racemase domain protein [Methylocella silvestris BL2]
Length = 230
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 105/219 (47%), Positives = 139/219 (63%), Gaps = 1/219 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L +++I +A A RP ++LV VSK + +I L+ G+ F EN++QEA
Sbjct: 10 SVLDRLAEVRKEIGRAAADAGRPPGDIALVCVSKTFSAAEIEPVLAAGERRFGENRVQEA 69
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++KW + DV+L IG LQSNK E V LFDVIETV R+K A L+ E K +R
Sbjct: 70 QEKWPALRQAYPDVELHLIGPLQSNKAHEAVKLFDVIETVDRDKIAKALATEAAKAARRP 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Y+QVNTG E QK+G++P + F+ CR +Y L + GLMCIPP PHF LL++I
Sbjct: 130 KFYVQVNTGAEPQKAGVLPGEADAFIARCRNEYGLEIAGLMCIPPVDDQASPHFALLNQI 189
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A L +LSMGM+ DFELAI GAT VRIGS IFG RP
Sbjct: 190 AARNGLRELSMGMSGDFELAIQLGATHVRIGSAIFGGRP 228
>gi|28899390|ref|NP_798995.1| FkuA protein [Vibrio parahaemolyticus RIMD 2210633]
gi|153839183|ref|ZP_01991850.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|260366261|ref|ZP_05778720.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
K5030]
gi|260878922|ref|ZP_05891277.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AN-5034]
gi|260898277|ref|ZP_05906773.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
Peru-466]
gi|260903381|ref|ZP_05911776.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AQ4037]
gi|28807626|dbj|BAC60879.1| FkuA [Vibrio parahaemolyticus RIMD 2210633]
gi|149747285|gb|EDM58269.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|308085861|gb|EFO35556.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
Peru-466]
gi|308090493|gb|EFO40188.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AN-5034]
gi|308107474|gb|EFO45014.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AQ4037]
gi|308113535|gb|EFO51075.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
K5030]
gi|328474080|gb|EGF44885.1| FkuA protein [Vibrio parahaemolyticus 10329]
Length = 237
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRRDEQKCGRSPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + ++ +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRAKIAQRLNEQRPQELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGEDSKSGVSDAEIFELAELISRLPNLTLRGLMSIPANVSDYDAQLREFE 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++A + ++ LSMGM+ D AI +G+T VRIG+ IFG R T
Sbjct: 183 KLATLKQTLEQQYPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYST 234
>gi|113969537|ref|YP_733330.1| hypothetical protein Shewmr4_1193 [Shewanella sp. MR-4]
gi|113884221|gb|ABI38273.1| Protein of unknown function UPF0001 [Shewanella sp. MR-4]
Length = 238
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 110/228 (48%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPIEDIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIESLKGTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LSE+
Sbjct: 123 NVCIQINISDEDTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQSRELSEL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D ++AI G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVRIGSAIFGERDY 230
>gi|284799539|ref|ZP_05984247.2| pyridoxal phosphate enzyme, YggS family [Neisseria subflava NJ9703]
gi|284798165|gb|EFC53512.1| pyridoxal phosphate enzyme, YggS family [Neisseria subflava NJ9703]
Length = 239
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L Q + +E +A A R D+V LVAVSK + IR + GQ F EN +Q
Sbjct: 9 MSVLQQNYQDVCRAVEQAAEAAGRSADAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQ 68
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 69 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P + + + + V GLMC+ + + F+
Sbjct: 129 LQVCIEVNIAAEEAKHGVAPTEAVALALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHT 188
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E LSMGM+ D +A+ GAT VRIGS IFG+R
Sbjct: 189 MQRLLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGKRHYP 238
>gi|295094847|emb|CBK83938.1| pyridoxal phosphate enzyme, YggS family [Coprococcus sp. ART55/1]
Length = 231
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L + K+ I + A R + V+L+AVSK I L V F ENK+QE
Sbjct: 2 LKENYEKVKENIVRACEKAGRSPEDVTLIAVSKTKPLSDIEELLSDTDAVDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + + + IG LQ+NKV IV +I +V A + E K +
Sbjct: 62 VDKYENVSRPVN--WHMIGHLQTNKVKYIVDKVCMIHSVDSLNLAKTIEKEAAKHDVTVN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VN E K G+ ++ + + + V+GLM I P + +P+ + ++
Sbjct: 120 ILIEVNVAQEETKFGLSCDEVLPLIQEIKDFPHIRVKGLMTIAPFVDDPEDNRVYFRKLK 179
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 DLSLDIQSKSIDNIDMSVLSMGMTNDYEVAVEEGATLVRVGTGIFGARNYN 230
>gi|225076826|ref|ZP_03720025.1| hypothetical protein NEIFLAOT_01877 [Neisseria flavescens
NRL30031/H210]
gi|224951865|gb|EEG33074.1| hypothetical protein NEIFLAOT_01877 [Neisseria flavescens
NRL30031/H210]
Length = 245
Score = 188 bits (476), Expect = 6e-46, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L Q + ++ +A A RP ++V LVAVSK + IR + GQ F EN +Q
Sbjct: 9 MSVLQQNYQDVNRAVKQAAEAAGRPANAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQ 68
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 69 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ + + F+
Sbjct: 129 LQVCIEVNIAAEEAKHGVAPDEAVALALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHT 188
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E LSMGM+ D +A+ GAT VRIGS IFG R +
Sbjct: 189 MQRLLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGRREQK 238
>gi|15601977|ref|NP_245049.1| hypothetical protein PM0112 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|34223056|sp|Q9CPD5|Y112_PASMU RecName: Full=UPF0001 protein PM0112
gi|12720324|gb|AAK02196.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 233
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 115/232 (49%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +Q I+++ AKRP+ +V L+AVSK + I A GQ F EN +QE
Sbjct: 1 MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +K ++ FIG LQSNK + FD ++T+ R+K A L+ + +
Sbjct: 61 GVEKIQYFAQKNIPLEWHFIGPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI PN+ D + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLMAIPAPTDDLATQEQAFTQ 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYS 232
>gi|95929070|ref|ZP_01311815.1| Protein of unknown function UPF0001 [Desulfuromonas acetoxidans DSM
684]
gi|95134971|gb|EAT16625.1| Protein of unknown function UPF0001 [Desulfuromonas acetoxidans DSM
684]
Length = 230
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 15/231 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + L+ +Q+I + + R + L+AVSK + I ALS GQ +F E+ +
Sbjct: 1 MSVEIAHNLETIQQRITAACLRCGRDPQDIQLIAVSKKKPVELIEAALSAGQTLFGESYV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K V+ FIG+LQSNKV + ++I +V R A ++ + K
Sbjct: 61 QEFIDKHQ--VVTGPVRWHFIGALQSNKVKYLAGKTELIHSVDRLSLAKEINKQWGKADD 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
+ +QVN G E K+G+ ++ ++ V + L+VEGLM +PP +P F
Sbjct: 119 VARILVQVNVGDEASKAGVPVDKAEELVRQLSELPHLHVEGLMALPPYADNLEQVRPWFR 178
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL E+A + + LSMGM+ DFE+AI GAT +R+G+ IFG R
Sbjct: 179 LLRELAEKIDTLNLPNVSMATLSMGMSHDFEIAIEEGATLIRVGTAIFGAR 229
>gi|271501904|ref|YP_003334930.1| alanine racemase domain-containing protein [Dickeya dadantii
Ech586]
gi|270345459|gb|ACZ78224.1| alanine racemase domain protein [Dickeya dadantii Ech586]
Length = 243
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +QKI +A R + ++L+AVSK + A++ GQ F EN +QE
Sbjct: 9 TVQQNLQDVRQKISAAAQRCGRAPEEITLLAVSKTKPVSALEEAIAAGQRAFGENYVQEG 68
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + FIG LQSNK + FD T+ R + A LS +
Sbjct: 69 VDKVRHFQTALPDVALEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPAHLP 128
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSGI+ ++ + L + GLM IP + F
Sbjct: 129 PLNVLLQVNISQEASKSGILVSELPELAASVATLPNLRLRGLMAIPAPQADHAQQLAVFR 188
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++E+ + K L LSMGMT D AI +G+T VRIG+ IFG R +
Sbjct: 189 QMTELFLQLKVDYGTLDTLSMGMTDDMAAAIEAGSTMVRIGTAIFGARDYSS 240
>gi|319638710|ref|ZP_07993469.1| hypothetical protein HMPREF0604_01093 [Neisseria mucosa C102]
gi|317399951|gb|EFV80613.1| hypothetical protein HMPREF0604_01093 [Neisseria mucosa C102]
Length = 232
Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + + +E +A A RP D+V LVAVSK + IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYRDVCRAVEQAAEAAGRPADAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ + + F+
Sbjct: 121 LQVCIEVNIAAEEAKHGVAPDEAVGLALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHT 180
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E LSMGM+ D +A+ GAT +RIGS IFG+R
Sbjct: 181 MQRLLAELNTAGVEADVLSMGMSGDMPIAVECGATHIRIGSAIFGKRHYP 230
>gi|241758478|ref|ZP_04756598.1| pyridoxal phosphate enzyme, YggS family [Neisseria flavescens
SK114]
gi|241321381|gb|EER57522.1| pyridoxal phosphate enzyme, YggS family [Neisseria flavescens
SK114]
Length = 231
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 107/230 (46%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L Q + +E +A A RP D+V LVAVSK + IR GQ F EN +Q
Sbjct: 1 MSVLQQNYQDVCRAVEQAAEAAGRPADAVKLVAVSKTFPADDIREVYVAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIDRLKTARRLSEQRSSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P + + Q + V GLMC+ + + F+
Sbjct: 121 LQVCIEVNIAAEEAKHGVAPAEAVALALEVAQLPNIKVRGLMCVAKADSSDDELRSQFHT 180
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E LSMGM+ D +A+ GAT VRIGS IFG+R
Sbjct: 181 MQRLLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGKRHYP 230
>gi|254472228|ref|ZP_05085628.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
gi|211958511|gb|EEA93711.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
Length = 225
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 133/217 (61%), Gaps = 1/217 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L+ K+ I + A+RP SV+L+AVSK ++ I+ L GQ +F EN++QEA KW
Sbjct: 8 RLKEVKENIGKAEKDAERPNGSVTLIAVSKTFEASAIKPVLEAGQRVFGENRVQEAMGKW 67
Query: 66 IP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ V+L IG LQSNK E + FDVI TV R+K A L EM KQ + ++I
Sbjct: 68 PGLREEFEGVELHLIGPLQSNKAKEAIQTFDVIHTVDRDKIAKALKAEMDKQGKTPKLFI 127
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI P + F+ CR +Y L +EGLMCIPP P HF LL +IA+
Sbjct: 128 QVNTGEEEQKAGIPPKEADAFIAKCRDEYGLEIEGLMCIPPVDEAPGMHFALLEKIAKRN 187
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L KLSMGM+ D+ +A+ GAT VR+GS +FG R
Sbjct: 188 GLEKLSMGMSSDYPIAVQHGATHVRVGSAVFGARDYS 224
>gi|307310428|ref|ZP_07590076.1| alanine racemase domain protein [Escherichia coli W]
gi|306909323|gb|EFN39818.1| alanine racemase domain protein [Escherichia coli W]
gi|315062257|gb|ADT76584.1| hypothetical protein ECW_m3209 [Escherichia coli W]
gi|323377159|gb|ADX49427.1| alanine racemase domain protein [Escherichia coli KO11]
Length = 234
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L ++KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVREKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|94971230|ref|YP_593278.1| hypothetical protein Acid345_4204 [Candidatus Koribacter versatilis
Ellin345]
gi|94553280|gb|ABF43204.1| Protein of unknown function UPF0001 [Candidatus Koribacter
versatilis Ellin345]
Length = 231
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 119/231 (51%), Gaps = 10/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++IE +A A R ++L+AV K + IR A + GQ +F EN++QE
Sbjct: 1 MSIAENISGIRRRIETAAKHAARNPVEIALMAVCKTKPADAIREAYAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D + IG LQSNK LF +++V K A L+ + L
Sbjct: 61 FATKAPLLSGLSDARFHMIGHLQSNKSKAAAELFSAVDSVDSLKLAERLNAAARDLGKTL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN--VEGLMCIPPAMGNP---KPHFY 175
+ I++N G E KSG+ P + IL K N + GLM +PP +P +P+F
Sbjct: 121 DILIEINVGGEEAKSGMPPESPEVLQILEHAKEWQNLRMRGLMTVPPFTEDPEGARPYFR 180
Query: 176 LLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E+ L +LSMGM+ DFE+AI G+T VR+G+ IFGERP
Sbjct: 181 TVRELRDSMALKGFALDQLSMGMSHDFEIAIEEGSTCVRVGTAIFGERPTP 231
>gi|306812145|ref|ZP_07446343.1| hypothetical protein ECNC101_09539 [Escherichia coli NC101]
gi|305854183|gb|EFM54621.1| hypothetical protein ECNC101_09539 [Escherichia coli NC101]
Length = 234
Score = 187 bits (475), Expect = 8e-46, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIVEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|329113972|ref|ZP_08242739.1| Hypothetical protein APO_0746 [Acetobacter pomorum DM001]
gi|326696719|gb|EGE48393.1| Hypothetical protein APO_0746 [Acetobacter pomorum DM001]
Length = 232
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 93/220 (42%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L +Q I+ +A A R SV+LVAVSK ++ AL+ GQ +F EN++QEA
Sbjct: 12 LADRLTAVRQNIDAAAHTAGRNPASVTLVAVSKFHPLSSVQEALAAGQRVFGENRVQEAA 71
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ D++L IG LQ+NK + V + DVIE++ R + A L+ K+
Sbjct: 72 SKFPTLRATYPDLRLHLIGGLQTNKARDAVRIADVIESLDRPELAEALAKAADKEGLLPE 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VNTG E QK G+ + F+ CRQ++ ++GLMCIPPAM +P PHF LL +A
Sbjct: 132 LLIEVNTGDEPQKFGVPREKADSFIRTCRQQFGAKLQGLMCIPPAMQDPVPHFRLLRSMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+E L +SMGM+ D+ AIA GAT VR+G+ IFG RP
Sbjct: 192 QEHGLPVISMGMSADYPQAIAEGATLVRVGTAIFGPRPPS 231
>gi|227888506|ref|ZP_04006311.1| alanine racemase family protein [Escherichia coli 83972]
gi|222034646|emb|CAP77388.1| UPF0001 protein yggS [Escherichia coli LF82]
gi|227834775|gb|EEJ45241.1| alanine racemase family protein [Escherichia coli 83972]
gi|281179960|dbj|BAI56290.1| conserved hypothetical protein [Escherichia coli SE15]
gi|307554933|gb|ADN47708.1| alanine racemase family protein [Escherichia coli ABU 83972]
Length = 234
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRYFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|309703306|emb|CBJ02642.1| putative amino acid racemase [Escherichia coli ETEC H10407]
Length = 234
Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEF 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|225848394|ref|YP_002728557.1| pyridoxal phosphate enzyme, YggS family [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644612|gb|ACN99662.1| pyridoxal phosphate enzyme, YggS family [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 227
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ Q +++I + + R ++ V L+A SK +KI A CG F EN++QE
Sbjct: 1 MSVKENCQKIEERILKACQRSGRKREEVVLLAASKTQPVEKILQAYYCGIRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ D+ IG LQ+NKV V F++I ++ RE+ + K ++
Sbjct: 61 GIEKIEALKDYKDIHWHLIGGLQTNKVKYAVKYFEMIHSIDREELVDEIEKRASKMNKIQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
I+VN E K G+ K K + + GLM IPP NP+ ++
Sbjct: 121 EGLIEVNF-GEESKYGVKEENLKKLFEYILTKEHIKILGLMAIPPYFENPEDVRPFFRKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KL LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 RQLKEDLEKDFNVKLPHLSMGMSHDFEVAIEEGATIVRIGTALFGER 226
>gi|323966468|gb|EGB61901.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
M863]
gi|327251719|gb|EGE63405.1| hypothetical protein ECSTEC7V_3570 [Escherichia coli STEC_7v]
Length = 234
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVSELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|300980103|ref|ZP_07174846.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 45-1]
gi|300409360|gb|EFJ92898.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 45-1]
Length = 234
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIHHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|227544397|ref|ZP_03974446.1| TIM-barrel fold protein [Lactobacillus reuteri CF48-3A]
gi|300909742|ref|ZP_07127203.1| YggS family pyridoxal phosphate enzyme [Lactobacillus reuteri
SD2112]
gi|227185660|gb|EEI65731.1| TIM-barrel fold protein [Lactobacillus reuteri CF48-3A]
gi|300893607|gb|EFK86966.1| YggS family pyridoxal phosphate enzyme [Lactobacillus reuteri
SD2112]
Length = 235
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 14/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKDVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNSFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK D+ IG LQ NKV I +I++V K + E K +R +
Sbjct: 61 LDKKHDE--LPADINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMKTIEKEGRKHNRII 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P+ I+VN G E K G+ P Q + + GLM P +P+ +
Sbjct: 119 PILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFR 178
Query: 179 EI----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 179 RLHELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYS 231
>gi|269101814|ref|ZP_06154511.1| hypothetical protein VDA_001230 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161712|gb|EEZ40208.1| hypothetical protein VDA_001230 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 233
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I+ +A R DSV L+AVSK I A+ GQ F EN +QE
Sbjct: 3 SIKQNIEQVISEIDAAAKKCGRTADSVQLLAVSKTKPIAAIEEAIQAGQFAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + FIG LQSNK + FD + +V R K A L+ +
Sbjct: 63 VEKIEHFRAHPQADALTWHFIGPLQSNKSRPVAENFDWVHSVDRLKIAQRLNDQRPTDLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+NT E KSG+ Q + Q L + GLM IP + +
Sbjct: 123 PLNVLLQINTSGEASKSGLDFEQVAELANQVAQMPNLVLRGLMSIPEQADDYESQLAAFR 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A+ +L LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 SLAQALEQLKPLHPQLDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGARNYN 233
>gi|15803490|ref|NP_289523.1| hypothetical protein Z4296 [Escherichia coli O157:H7 EDL933]
gi|15833081|ref|NP_311854.1| hypothetical protein ECs3826 [Escherichia coli O157:H7 str. Sakai]
gi|16130852|ref|NP_417426.1| predicted enzyme, binds pyridoxal 5'-phosphate [Escherichia coli
str. K-12 substr. MG1655]
gi|26249372|ref|NP_755412.1| hypothetical protein c3537 [Escherichia coli CFT073]
gi|74313507|ref|YP_311927.1| hypothetical protein SSON_3104 [Shigella sonnei Ss046]
gi|82545427|ref|YP_409373.1| hypothetical protein SBO_3040 [Shigella boydii Sb227]
gi|82778278|ref|YP_404626.1| hypothetical protein SDY_3122 [Shigella dysenteriae Sd197]
gi|89109728|ref|AP_003508.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|110806859|ref|YP_690379.1| hypothetical protein SFV_3005 [Shigella flexneri 5 str. 8401]
gi|157155954|ref|YP_001464304.1| alanine racemase [Escherichia coli E24377A]
gi|157162412|ref|YP_001459730.1| alanine racemase [Escherichia coli HS]
gi|168747557|ref|ZP_02772579.1| alanine racemase family [Escherichia coli O157:H7 str. EC4113]
gi|168753903|ref|ZP_02778910.1| alanine racemase family [Escherichia coli O157:H7 str. EC4401]
gi|168760093|ref|ZP_02785100.1| alanine racemase family [Escherichia coli O157:H7 str. EC4501]
gi|168766958|ref|ZP_02791965.1| alanine racemase family [Escherichia coli O157:H7 str. EC4486]
gi|168773410|ref|ZP_02798417.1| alanine racemase family [Escherichia coli O157:H7 str. EC4196]
gi|168781810|ref|ZP_02806817.1| alanine racemase family [Escherichia coli O157:H7 str. EC4076]
gi|168785809|ref|ZP_02810816.1| alanine racemase family [Escherichia coli O157:H7 str. EC869]
gi|168797526|ref|ZP_02822533.1| alanine racemase family [Escherichia coli O157:H7 str. EC508]
gi|170018808|ref|YP_001723762.1| alanine racemase domain-containing protein [Escherichia coli ATCC
8739]
gi|170082503|ref|YP_001731823.1| hypothetical protein ECDH10B_3126 [Escherichia coli str. K-12
substr. DH10B]
gi|170683383|ref|YP_001745112.1| alanine racemase [Escherichia coli SMS-3-5]
gi|187731481|ref|YP_001881724.1| pyridoxal phosphate enzyme, YggS family [Shigella boydii CDC
3083-94]
gi|191167925|ref|ZP_03029728.1| alanine racemase family [Escherichia coli B7A]
gi|193063475|ref|ZP_03044564.1| alanine racemase family [Escherichia coli E22]
gi|193067463|ref|ZP_03048431.1| alanine racemase family [Escherichia coli E110019]
gi|194426432|ref|ZP_03058987.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli B171]
gi|194431672|ref|ZP_03063963.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1012]
gi|195937089|ref|ZP_03082471.1| hypothetical protein EscherichcoliO157_11651 [Escherichia coli
O157:H7 str. EC4024]
gi|208806214|ref|ZP_03248551.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4206]
gi|208811836|ref|ZP_03253165.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4045]
gi|208820717|ref|ZP_03261037.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4042]
gi|209395868|ref|YP_002272431.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4115]
gi|209920410|ref|YP_002294494.1| hypothetical protein ECSE_3219 [Escherichia coli SE11]
gi|215488249|ref|YP_002330680.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|217327080|ref|ZP_03443163.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. TW14588]
gi|218555510|ref|YP_002388423.1| hypothetical protein ECIAI1_3084 [Escherichia coli IAI1]
gi|218696549|ref|YP_002404216.1| putative enzyme [Escherichia coli 55989]
gi|218701661|ref|YP_002409290.1| hypothetical protein ECIAI39_3369 [Escherichia coli IAI39]
gi|238902073|ref|YP_002927869.1| putative enzyme [Escherichia coli BW2952]
gi|253772211|ref|YP_003035042.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038000|ref|ZP_04872058.1| pyridoxal phosphate enzyme [Escherichia sp. 1_1_43]
gi|254162861|ref|YP_003045969.1| hypothetical protein ECB_02781 [Escherichia coli B str. REL606]
gi|254794903|ref|YP_003079740.1| hypothetical protein ECSP_3922 [Escherichia coli O157:H7 str.
TW14359]
gi|256019247|ref|ZP_05433112.1| predicted enzyme [Shigella sp. D9]
gi|256024540|ref|ZP_05438405.1| predicted enzyme [Escherichia sp. 4_1_40B]
gi|260845621|ref|YP_003223399.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
gi|260857084|ref|YP_003230975.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
gi|260869638|ref|YP_003236040.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|261226263|ref|ZP_05940544.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261256479|ref|ZP_05949012.1| putative enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291284272|ref|YP_003501090.1| hypothetical protein G2583_3610 [Escherichia coli O55:H7 str.
CB9615]
gi|293412311|ref|ZP_06655034.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B354]
gi|293416211|ref|ZP_06658851.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B185]
gi|297517998|ref|ZP_06936384.1| hypothetical protein EcolOP_10202 [Escherichia coli OP50]
gi|300815579|ref|ZP_07095803.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 107-1]
gi|300824814|ref|ZP_07104918.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 119-7]
gi|300906485|ref|ZP_07124180.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 84-1]
gi|300921293|ref|ZP_07137662.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 115-1]
gi|300925053|ref|ZP_07140971.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 182-1]
gi|300928106|ref|ZP_07143651.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 187-1]
gi|300940767|ref|ZP_07155313.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 21-1]
gi|300947682|ref|ZP_07161851.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 116-1]
gi|300954202|ref|ZP_07166667.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 175-1]
gi|301027298|ref|ZP_07190644.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 69-1]
gi|301027724|ref|ZP_07191034.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 196-1]
gi|301049254|ref|ZP_07196227.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 185-1]
gi|301328105|ref|ZP_07221246.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 78-1]
gi|301643695|ref|ZP_07243734.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 146-1]
gi|307139636|ref|ZP_07498992.1| hypothetical protein EcolH7_16113 [Escherichia coli H736]
gi|309785221|ref|ZP_07679852.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1617]
gi|309794040|ref|ZP_07688465.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 145-7]
gi|312964786|ref|ZP_07779026.1| UPF0001 protein [Escherichia coli 2362-75]
gi|312972807|ref|ZP_07786980.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643644|ref|ZP_08344775.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H736]
gi|331648706|ref|ZP_08349794.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M605]
gi|331669697|ref|ZP_08370543.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA271]
gi|331678945|ref|ZP_08379619.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H591]
gi|331684578|ref|ZP_08385170.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H299]
gi|332280356|ref|ZP_08392769.1| conserved hypothetical protein [Shigella sp. D9]
gi|54040264|sp|P67081|YGGS_ECOL6 RecName: Full=UPF0001 protein yggS
gi|54040265|sp|P67082|YGGS_ECO57 RecName: Full=UPF0001 protein yggS
gi|54042612|sp|P67080|YGGS_ECOLI RecName: Full=UPF0001 protein yggS
gi|112489681|pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
gi|12517497|gb|AAG58082.1|AE005525_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26109780|gb|AAN81985.1|AE016766_73 Hypothetical protein yggS [Escherichia coli CFT073]
gi|882480|gb|AAA69118.1| ORF_o234 [Escherichia coli str. K-12 substr. MG1655]
gi|1789321|gb|AAC75988.1| predicted enzyme, binds pyridoxal 5'-phosphate [Escherichia coli
str. K-12 substr. MG1655]
gi|13363299|dbj|BAB37250.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73856984|gb|AAZ89691.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242426|gb|ABB63136.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246838|gb|ABB67546.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85675761|dbj|BAE77014.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|110616407|gb|ABF05074.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157068092|gb|ABV07347.1| alanine racemase family [Escherichia coli HS]
gi|157077984|gb|ABV17692.1| alanine racemase family [Escherichia coli E24377A]
gi|169753736|gb|ACA76435.1| alanine racemase domain protein [Escherichia coli ATCC 8739]
gi|169890338|gb|ACB04045.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521101|gb|ACB19279.1| alanine racemase family [Escherichia coli SMS-3-5]
gi|187428473|gb|ACD07747.1| pyridoxal phosphate enzyme, YggS family [Shigella boydii CDC
3083-94]
gi|187770778|gb|EDU34622.1| alanine racemase family [Escherichia coli O157:H7 str. EC4196]
gi|188017916|gb|EDU56038.1| alanine racemase family [Escherichia coli O157:H7 str. EC4113]
gi|189000521|gb|EDU69507.1| alanine racemase family [Escherichia coli O157:H7 str. EC4076]
gi|189358401|gb|EDU76820.1| alanine racemase family [Escherichia coli O157:H7 str. EC4401]
gi|189363749|gb|EDU82168.1| alanine racemase family [Escherichia coli O157:H7 str. EC4486]
gi|189369217|gb|EDU87633.1| alanine racemase family [Escherichia coli O157:H7 str. EC4501]
gi|189374066|gb|EDU92482.1| alanine racemase family [Escherichia coli O157:H7 str. EC869]
gi|189379642|gb|EDU98058.1| alanine racemase family [Escherichia coli O157:H7 str. EC508]
gi|190902010|gb|EDV61756.1| alanine racemase family [Escherichia coli B7A]
gi|192930752|gb|EDV83357.1| alanine racemase family [Escherichia coli E22]
gi|192959420|gb|EDV89855.1| alanine racemase family [Escherichia coli E110019]
gi|194415740|gb|EDX32007.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli B171]
gi|194420028|gb|EDX36106.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1012]
gi|195183144|dbj|BAG66689.1| predicted protein [Escherichia coli O111:H-]
gi|208726015|gb|EDZ75616.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4206]
gi|208733113|gb|EDZ81800.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4045]
gi|208740840|gb|EDZ88522.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4042]
gi|209157268|gb|ACI34701.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4115]
gi|209760058|gb|ACI78341.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760060|gb|ACI78342.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760062|gb|ACI78343.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760064|gb|ACI78344.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760066|gb|ACI78345.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209913669|dbj|BAG78743.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215266321|emb|CAS10752.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|217319447|gb|EEC27872.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. TW14588]
gi|218353281|emb|CAU99241.1| putative enzyme [Escherichia coli 55989]
gi|218362278|emb|CAQ99899.1| putative enzyme [Escherichia coli IAI1]
gi|218371647|emb|CAR19486.1| putative enzyme [Escherichia coli IAI39]
gi|226839624|gb|EEH71645.1| pyridoxal phosphate enzyme [Escherichia sp. 1_1_43]
gi|238862357|gb|ACR64355.1| predicted enzyme [Escherichia coli BW2952]
gi|242378477|emb|CAQ33261.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|253323255|gb|ACT27857.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974762|gb|ACT40433.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978928|gb|ACT44598.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|254594303|gb|ACT73664.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|257755733|dbj|BAI27235.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760768|dbj|BAI32265.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|257765994|dbj|BAI37489.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|260448006|gb|ACX38428.1| alanine racemase domain protein [Escherichia coli DH1]
gi|290764144|gb|ADD58105.1| UPF0001 protein yggS [Escherichia coli O55:H7 str. CB9615]
gi|291432400|gb|EFF05382.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B185]
gi|291469082|gb|EFF11573.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B354]
gi|299879160|gb|EFI87371.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 196-1]
gi|300298950|gb|EFJ55335.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 185-1]
gi|300318786|gb|EFJ68570.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 175-1]
gi|300395104|gb|EFJ78642.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 69-1]
gi|300401728|gb|EFJ85266.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 84-1]
gi|300411755|gb|EFJ95065.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 115-1]
gi|300418799|gb|EFK02110.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 182-1]
gi|300452728|gb|EFK16348.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 116-1]
gi|300454467|gb|EFK17960.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 21-1]
gi|300463872|gb|EFK27365.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 187-1]
gi|300522721|gb|EFK43790.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 119-7]
gi|300531508|gb|EFK52570.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 107-1]
gi|300845409|gb|EFK73169.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 78-1]
gi|301077897|gb|EFK92703.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 146-1]
gi|308122447|gb|EFO59709.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 145-7]
gi|308926341|gb|EFP71817.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1617]
gi|310332749|gb|EFP99962.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312290342|gb|EFR18222.1| UPF0001 protein [Escherichia coli 2362-75]
gi|315137548|dbj|BAJ44707.1| hypothetical protein ECDH1ME8569_2851 [Escherichia coli DH1]
gi|315256843|gb|EFU36811.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 85-1]
gi|315614887|gb|EFU95525.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 3431]
gi|320174053|gb|EFW49223.1| hypothetical protein SDB_03450 [Shigella dysenteriae CDC 74-1112]
gi|320181044|gb|EFW55965.1| hypothetical protein SGB_01868 [Shigella boydii ATCC 9905]
gi|320184298|gb|EFW59110.1| hypothetical protein SGF_03462 [Shigella flexneri CDC 796-83]
gi|320189300|gb|EFW63959.1| hypothetical protein ECoD_04304 [Escherichia coli O157:H7 str.
EC1212]
gi|320195070|gb|EFW69699.1| hypothetical protein EcoM_02833 [Escherichia coli WV_060327]
gi|320202615|gb|EFW77185.1| hypothetical protein ECoL_00278 [Escherichia coli EC4100B]
gi|320640597|gb|EFX10136.1| hypothetical protein ECO5101_04254 [Escherichia coli O157:H7 str.
G5101]
gi|320645844|gb|EFX14829.1| hypothetical protein ECO9389_23741 [Escherichia coli O157:H- str.
493-89]
gi|320651144|gb|EFX19584.1| hypothetical protein ECO2687_11728 [Escherichia coli O157:H- str. H
2687]
gi|320656640|gb|EFX24536.1| hypothetical protein ECO7815_01885 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662159|gb|EFX29560.1| hypothetical protein ECO5905_09823 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667234|gb|EFX34197.1| hypothetical protein ECOSU61_08909 [Escherichia coli O157:H7 str.
LSU-61]
gi|323154660|gb|EFZ40859.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli EPECa14]
gi|323162603|gb|EFZ48450.1| hypothetical protein ECE128010_1207 [Escherichia coli E128010]
gi|323167997|gb|EFZ53686.1| hypothetical protein SS53G_1713 [Shigella sonnei 53G]
gi|323173835|gb|EFZ59464.1| hypothetical protein ECLT68_2154 [Escherichia coli LT-68]
gi|323180411|gb|EFZ65963.1| hypothetical protein ECOK1180_1093 [Escherichia coli 1180]
gi|323183522|gb|EFZ68919.1| hypothetical protein ECOK1357_3301 [Escherichia coli 1357]
gi|323188655|gb|EFZ73940.1| hypothetical protein ECRN5871_3075 [Escherichia coli RN587/1]
gi|323936046|gb|EGB32341.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E1520]
gi|323941963|gb|EGB38142.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E482]
gi|323946551|gb|EGB42574.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H120]
gi|323971762|gb|EGB66989.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
TA007]
gi|324005507|gb|EGB74726.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 57-2]
gi|324017224|gb|EGB86443.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 117-3]
gi|324119746|gb|EGC13626.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E1167]
gi|325498508|gb|EGC96367.1| hypothetical protein ECD227_2605 [Escherichia fergusonii ECD227]
gi|326338961|gb|EGD62776.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. 1044]
gi|326343157|gb|EGD66925.1| hypothetical protein ECF_02670 [Escherichia coli O157:H7 str. 1125]
gi|330908986|gb|EGH37500.1| hypothetical protein YggS [Escherichia coli AA86]
gi|331037115|gb|EGI09339.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H736]
gi|331042453|gb|EGI14595.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M605]
gi|331063365|gb|EGI35278.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA271]
gi|331073775|gb|EGI45096.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H591]
gi|331078193|gb|EGI49399.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H299]
gi|332087670|gb|EGI92797.1| hypothetical protein SD15574_3395 [Shigella dysenteriae 155-74]
gi|332091365|gb|EGI96453.1| hypothetical protein SB359474_3533 [Shigella boydii 3594-74]
gi|332102708|gb|EGJ06054.1| conserved hypothetical protein [Shigella sp. D9]
gi|332344851|gb|AEE58185.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332999698|gb|EGK19283.1| hypothetical protein SFVA6_3845 [Shigella flexneri VA-6]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|148827239|ref|YP_001291992.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
gi|148718481|gb|ABQ99608.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
Length = 233
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYS 232
>gi|324115034|gb|EGC08999.1| YggS family protein pyridoxal phosphate enzyme [Escherichia
fergusonii B253]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + D + L + GLM IP F +
Sbjct: 121 SPLNVLIQINISDENSKSGIQLAELDDLAAAVAELPHLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|323978754|gb|EGB73835.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
TW10509]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PHLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|333000453|gb|EGK20034.1| hypothetical protein SFK272_3774 [Shigella flexneri K-272]
gi|333015291|gb|EGK34633.1| hypothetical protein SFK227_3747 [Shigella flexneri K-227]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAVLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|229847062|ref|ZP_04467168.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
7P49H1]
gi|229810146|gb|EEP45866.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
7P49H1]
Length = 233
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + AKR +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIEMACEEAKRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLILAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFGARNYS 232
>gi|260773602|ref|ZP_05882518.1| hypothetical protein VIB_002076 [Vibrio metschnikovii CIP 69.14]
gi|260612741|gb|EEX37944.1| hypothetical protein VIB_002076 [Vibrio metschnikovii CIP 69.14]
Length = 238
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +++++ R SV L+AVSK + I A GQ+ F EN +Q
Sbjct: 3 SIQQNIEQITSQMKSAQQKCGRSPSSVQLLAVSKTKPVEAILEAALAGQLAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + D++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 VNKIRYFAEHHPQLDLEWHFIGPLQSNKTRLIAEHFDWMHTLDRAKIAQRLSEQRPAHKA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI L + L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGETSKSGISEQALFPLAELISELPNLTLRGLMSIPENVADYAEQLVAFQ 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A L LSMGM+ D + AI +G+T VRIG+ IFG+R T
Sbjct: 183 RLADLQARLTERYPALDTLSMGMSGDMQAAIEAGSTMVRIGTAIFGQRDYPT 234
>gi|332752994|gb|EGJ83378.1| hypothetical protein SF434370_3172 [Shigella flexneri 4343-70]
gi|332999870|gb|EGK19453.1| hypothetical protein SFK218_3954 [Shigella flexneri K-218]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNEQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|226942470|ref|YP_002797543.1| alanine racemase domain-containing protein [Azotobacter vinelandii
DJ]
gi|226717397|gb|ACO76568.1| alanine racemase domain protein [Azotobacter vinelandii DJ]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 105/228 (46%), Gaps = 10/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + +I +A + R +V L+AVSK + +R A +CGQ F EN LQEA
Sbjct: 3 SIPESVAKVRARIREAAQASGRDPQNVRLLAVSKTKPASVLREAFACGQRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LAKQAELADL-ELTWHFIGPIQSNKTRAIAEHFAWVHSVDRAKIAQRLSEQRPAHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG P + + + L + GLM IP +P + +
Sbjct: 122 ICLQVNVSGEASKSGCEPEELAELAGAVAELPNLRLRGLMAIPEPSDDPAAQHAPFARLR 181
Query: 182 R---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 ELQESLGQHLGLDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDY 229
>gi|91212333|ref|YP_542319.1| hypothetical protein UTI89_C3340 [Escherichia coli UTI89]
gi|110643100|ref|YP_670830.1| hypothetical protein ECP_2945 [Escherichia coli 536]
gi|117625178|ref|YP_854166.1| hypothetical protein APECO1_3570 [Escherichia coli APEC O1]
gi|191171913|ref|ZP_03033459.1| alanine racemase family [Escherichia coli F11]
gi|194436734|ref|ZP_03068834.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 101-1]
gi|218559942|ref|YP_002392855.1| enzyme [Escherichia coli S88]
gi|237706397|ref|ZP_04536878.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300995468|ref|ZP_07181116.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 200-1]
gi|331659086|ref|ZP_08360028.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA206]
gi|91073907|gb|ABE08788.1| hypothetical protein UTI89_C3340 [Escherichia coli UTI89]
gi|110344692|gb|ABG70929.1| hypothetical protein YggS [Escherichia coli 536]
gi|115514302|gb|ABJ02377.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|190907948|gb|EDV67541.1| alanine racemase family [Escherichia coli F11]
gi|194424216|gb|EDX40203.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 101-1]
gi|218366711|emb|CAR04468.1| putative enzyme [Escherichia coli S88]
gi|226899437|gb|EEH85696.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294490236|gb|ADE88992.1| alanine racemase family [Escherichia coli IHE3034]
gi|300304830|gb|EFJ59350.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 200-1]
gi|307625475|gb|ADN69779.1| putative enzyme [Escherichia coli UM146]
gi|315289501|gb|EFU48896.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 110-3]
gi|315295640|gb|EFU54963.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 16-3]
gi|323951611|gb|EGB47486.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H252]
gi|323957325|gb|EGB53047.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H263]
gi|323960756|gb|EGB56377.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H489]
gi|324011798|gb|EGB81017.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 60-1]
gi|331053668|gb|EGI25697.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA206]
Length = 234
Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELSVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|227823848|ref|YP_002827821.1| alanine racemase domain protein [Sinorhizobium fredii NGR234]
gi|227342850|gb|ACP27068.1| alanine racemase domain protein [Sinorhizobium fredii NGR234]
Length = 219
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 110/219 (50%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A R + V+LVAVSK D++ IR A++ GQ +F EN++QE
Sbjct: 1 MEVQERLNDVMSRIRASEAAADRAQGGVTLVAVSKTFDAEAIRPAIAAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW R+ ++L IG LQSNK ++ V+LFDVIET+ REK A ++ E+ +Q R
Sbjct: 61 AQAKWPELKRETAGLELHLIGPLQSNKTADAVALFDVIETIDREKVARTVAAEIKRQGRK 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P T FV LCR + L++EGLMCIPP NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEAQKAGIAPQDTLAFVDLCRLELGLDIEGLMCIPPLDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L +LSMGM+ DFE AI GATSVR+GS IFG R
Sbjct: 181 LAAKCGLNRLSMGMSGDFETAIGFGATSVRVGSAIFGAR 219
>gi|153828401|ref|ZP_01981068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148876110|gb|EDL74245.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 236
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRDFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVNMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|301168748|emb|CBW28339.1| predicted enzyme [Haemophilus influenzae 10810]
Length = 237
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 109/233 (46%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI +T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCSSTMVRIGTSIFGARNYST 233
>gi|218691075|ref|YP_002399287.1| hypothetical protein ECED1_3414 [Escherichia coli ED1a]
gi|218428639|emb|CAR09568.2| putative enzyme [Escherichia coli ED1a]
Length = 234
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGITGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|24114206|ref|NP_708716.1| hypothetical protein SF2941 [Shigella flexneri 2a str. 301]
gi|30064267|ref|NP_838438.1| hypothetical protein S3145 [Shigella flexneri 2a str. 2457T]
gi|24053353|gb|AAN44423.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042524|gb|AAP18248.1| hypothetical protein S3145 [Shigella flexneri 2a str. 2457T]
gi|281602287|gb|ADA75271.1| putative enzyme with a TIM-barrel fold [Shigella flexneri 2002017]
gi|313648001|gb|EFS12447.1| pyridoxal phosphate enzyme, YggS family [Shigella flexneri 2a str.
2457T]
gi|332753795|gb|EGJ84174.1| hypothetical protein SFK671_3525 [Shigella flexneri K-671]
gi|332754247|gb|EGJ84613.1| hypothetical protein SF274771_3537 [Shigella flexneri 2747-71]
gi|332765368|gb|EGJ95586.1| alanine racemase, N-terminal domain protein [Shigella flexneri
2930-71]
gi|333015075|gb|EGK34418.1| hypothetical protein SFK304_3756 [Shigella flexneri K-304]
Length = 234
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNEQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPALESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|146309164|ref|YP_001189629.1| alanine racemase domain-containing protein [Pseudomonas mendocina
ymp]
gi|145577365|gb|ABP86897.1| alanine racemase domain protein [Pseudomonas mendocina ymp]
Length = 230
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 104/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A ++R + L+AVSK + IR A + G F EN LQ
Sbjct: 1 MSTIAENIAKVGARIREAAQASQRNFADIGLLAVSKTKPADAIREAHAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALEKQAALSDL-PLIWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P + + L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEDSKSGCSPEELPELAQAIAALPNLKLRGLMAIPEPTDDIAAQHAAFAR 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRQLRDDLGLQLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDY 225
>gi|210612737|ref|ZP_03289452.1| hypothetical protein CLONEX_01654 [Clostridium nexile DSM 1787]
gi|210151430|gb|EEA82438.1| hypothetical protein CLONEX_01654 [Clostridium nexile DSM 1787]
Length = 231
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ ++KI ++ AKR + V+L+AVSK ++ + G F ENK+QE
Sbjct: 2 LSENLQQVEEKIADACKRAKRERSEVTLIAVSKTKPISMLQEIYNEGIRCFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D++ IG LQ NKV IV ++I +V + A ++ E K+ +
Sbjct: 62 EKYEQ--LPSDIKWHMIGHLQRNKVKYIVDKTELIHSVDSLRLAETINQEAAKKDVVSNI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + + + ++GLM I P + NP+ + + + +
Sbjct: 120 LIEVNVAEEESKFGVKVEEVLPLIEKIALFPNIQIKGLMTIAPYVKNPEENRPIFRRLRK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ LSMGMT D+E+AI GAT VR+G+GIFGER T
Sbjct: 180 LSVDINAKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGERNYTT 230
>gi|307943451|ref|ZP_07658795.1| pyridoxal phosphate enzyme, YggS family [Roseibium sp. TrichSKD4]
gi|307773081|gb|EFO32298.1| pyridoxal phosphate enzyme, YggS family [Roseibium sp. TrichSKD4]
Length = 224
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 103/218 (47%), Positives = 133/218 (61%), Gaps = 1/218 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + ++ + R SV+L+AVSK ++ IR L GQ +F EN++QEA K
Sbjct: 7 DRLASVQAELRRAESDGNRENGSVTLIAVSKTFEANDIRPVLGAGQRVFGENRVQEAMGK 66
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W + V+L IG LQSNK E V FDVI TV R+K A L EM KQ R LP +
Sbjct: 67 WPGLREEFEGVELHLIGPLQSNKAKEAVQTFDVIHTVDRQKIAKALKAEMDKQGRDLPCF 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+GI P +T FV C+ +LN+ GLMCIPP P PHF LL EIA+
Sbjct: 127 VQVNTGEEPQKAGISPKETDAFVTFCQNDIRLNIVGLMCIPPVEEAPGPHFALLEEIAKR 186
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ D+E+A+ GAT VR+GS IFG R
Sbjct: 187 NSLKQLSMGMSSDYEIAVGFGATHVRVGSAIFGARDYP 224
>gi|110596798|ref|ZP_01385088.1| Protein of unknown function UPF0001 [Chlorobium ferrooxidans DSM
13031]
gi|110341485|gb|EAT59945.1| Protein of unknown function UPF0001 [Chlorobium ferrooxidans DSM
13031]
Length = 229
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +++I+ + I A R DSV L+AV+K + +++ AL GQ+ F E+ +QE
Sbjct: 3 SIAANLEAIREQIKAACIKAGRQPDSVRLIAVTKTKPAAQVKEALDAGQLEFGESYVQEF 62
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P+ + + FIG LQSNKV I+ ++ + + TA LS + + +
Sbjct: 63 LEKSGDPILENSPIVWHFIGHLQSNKVRSIIDKVTLVHGIDKLSTAEELSKRAQQHNLQI 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P++ + + + GLM I P + + + F L
Sbjct: 123 DYLLEVNTSGESSKYGMPPDKLLSTAESLFKLPNITLRGLMTIASPDIESARREFRTLRL 182
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLT+LSMGM+ DFE AI GAT +R+GS IFG R
Sbjct: 183 LLESLKKIAPHPQKLTELSMGMSGDFEAAINEGATMIRVGSSIFGWR 229
>gi|240138136|ref|YP_002962608.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens AM1]
gi|240008105|gb|ACS39331.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens AM1]
Length = 246
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 100/222 (45%), Positives = 130/222 (58%), Gaps = 1/222 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 25 DVAAGLAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALEAGQRIFGENYVQES 84
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 85 KAKWPALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 144
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 145 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPADDPPSPHFALLARI 204
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
A L LSMGM+ DF AI GAT VR+G+ IFG R +T
Sbjct: 205 AERHGLPILSMGMSADFPAAIQMGATHVRVGTAIFGRRTKRT 246
>gi|153853146|ref|ZP_01994555.1| hypothetical protein DORLON_00540 [Dorea longicatena DSM 13814]
gi|149753932|gb|EDM63863.1| hypothetical protein DORLON_00540 [Dorea longicatena DSM 13814]
Length = 232
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I+ + A R +D V+L+AVSK + ++ A G I ENK QE
Sbjct: 2 LKENLEKVEENIQAACDRAGRKRDEVTLIAVSKTKPVEMLQEAYDLGVRINGENKAQELA 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG +Q NKV I+ D+I +V + A + E K +
Sbjct: 62 SKYE--VLPKDIHWHMIGHMQRNKVKYIIDKVDLIHSVDSVRLAETIDKEAEKHGVIANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+MP + +FV + V+GLM I P + NP+ + + + + +
Sbjct: 120 LIEVNVAKEESKFGLMPEEVPEFVEKIAGFPHIRVKGLMTIAPFVENPEENRPIFAHLRK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+++AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAKKNIDNITMSILSMGMTNDYQVAIEEGATMVRVGTGIFGARDY 228
>gi|188493150|ref|ZP_03000420.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 53638]
gi|188488349|gb|EDU63452.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 53638]
Length = 234
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDTGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|58040029|ref|YP_191993.1| hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
gi|58002443|gb|AAW61337.1| Hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
Length = 231
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 87/220 (39%), Positives = 125/220 (56%), Gaps = 1/220 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I + A R + VSLVAVSK + + AL+ GQ +F EN++QEA
Sbjct: 10 ISGNLAAIRHRIAQACEKAGRAEADVSLVAVSKFHPIESVEAALNAGQHLFGENRVQEAA 69
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ LR+ W D++L IG LQ+NK +E + D+IE++ R + + K R
Sbjct: 70 SKFPELRQRWPDLRLHIIGGLQTNKAAEACQIADMIESLDRPSLSDSIEKGAQKAGRLPE 129
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVNTG E QKSG+ + F+ +++ + GLMCIPP +P PHF LL ++
Sbjct: 130 LLVQVNTGDEPQKSGVPREEADAFIEASLERFGPKIRGLMCIPPEGEDPTPHFRLLRQMG 189
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA AT VR+G+ IFG RP
Sbjct: 190 HRHGLPVLSMGMSADFEKAIAENATLVRVGTAIFGSRPAP 229
>gi|218550198|ref|YP_002383989.1| hypothetical protein EFER_2890 [Escherichia fergusonii ATCC 35469]
gi|218357739|emb|CAQ90383.1| putative enzyme [Escherichia fergusonii ATCC 35469]
Length = 234
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 SPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|298293747|ref|YP_003695686.1| alanine racemase domain protein [Starkeya novella DSM 506]
gi|296930258|gb|ADH91067.1| alanine racemase domain protein [Starkeya novella DSM 506]
Length = 232
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 99/220 (45%), Positives = 134/220 (60%), Gaps = 3/220 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L ++L +++I ++ A R + V LVAVSK D++ I A+ GQ IF EN++QEA
Sbjct: 13 DLTSRLGEVRERIARASRDAGRKPEEVHLVAVSKTFDAEHILPAIEAGQRIFGENRVQEA 72
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ--SR 118
+ KW D++L IG LQ+NKV + + LFDVI T+ R A+ L+ E K
Sbjct: 73 RAKWPALRADYPDIELHLIGPLQTNKVRDALGLFDVIHTLDRPSLAAALAKEFAKLEGRP 132
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ IQVNTG E QK+G+ P + F+ CR + L +EGLMCIPPA PHF LL+
Sbjct: 133 APRLLIQVNTGEEPQKAGVAPLEADAFIAECRDVHGLTIEGLMCIPPADEPAAPHFALLA 192
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+IAR L+ LSMGM+ D+E AI GAT VR+GS IFG R
Sbjct: 193 KIARRNGLSALSMGMSGDYETAIGLGATYVRVGSAIFGTR 232
>gi|254508623|ref|ZP_05120739.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
16]
gi|219548474|gb|EED25483.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
16]
Length = 237
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ RP++SV L+AVSK I A GQV F EN +Q
Sbjct: 3 SIQQNIEQITSQIESAQQKCGRPRESVQLLAVSKTKPVDAILEAAHAGQVAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E ++ FIG +QSNK + F + TV R K A L+ +
Sbjct: 63 ADKVAYFNEHHPELALEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVNT E KSG+ N+ L L + GLM IP + +
Sbjct: 123 PLQVLMQVNTSGEASKSGLNENEIFALAELISSLPNLTLRGLMSIPANVSDYASQLSAFK 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + +L LSMGM+ D E AI +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDALVKRFPDEQLDTLSMGMSGDMEAAIEAGSTMVRIGTAIFGARDYS 235
>gi|255280917|ref|ZP_05345472.1| pyridoxal phosphate enzyme, YggS family [Bryantella formatexigens
DSM 14469]
gi|255268365|gb|EET61570.1| pyridoxal phosphate enzyme, YggS family [Bryantella formatexigens
DSM 14469]
Length = 229
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I+ + A R V+L+AVSK I L G + F ENK QE K
Sbjct: 2 VTENYRYVRGRIDEACRRAGRDPREVTLIAVSKTKPVSMIEELLPEGVLDFGENKPQELK 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ +++ IG LQ NKV ++S +I +V + A + E K +PV
Sbjct: 62 EKYE--VLPKNLRFHMIGHLQRNKVKYVISRACMIHSVDSLRLAETIQEEAAKHQLIMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G+ +T DFV + L V+GLM I P + NP+ + +
Sbjct: 120 LVEVNIAQEESKFGLSAAETPDFVRELSRFPNLCVKGLMTIAPFVENPEDNRVHFRNLYN 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+A+ GAT VR+G+GIFGER Q
Sbjct: 180 LFIDIKARNIDNVDMCILSMGMTNDYEVAVEEGATHVRVGTGIFGERNYQ 229
>gi|295109994|emb|CBL23947.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus obeum A2-162]
Length = 230
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ IE + A R V+L++VSK ++ A G F ENK+QE
Sbjct: 2 VAENLEQVRKNIELACKEAGRDPKEVTLISVSKTKPVSMLQEAYDAGSRDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D++ IG LQ NKV IV +I +V + A + E K S +PV
Sbjct: 62 DKVPQ--LPSDIRWHMIGHLQRNKVKYIVDKVALIHSVDSLRLAETIEHEAAKHSVTVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + V +++EGLM I P + +P+ + + ++ +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLSLVESVASFPHIHIEGLMTIAPYVEDPEENRGIFRQLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNINNVNMSVLSMGMTGDYQVAVQEGATMVRVGTGIFGERNY 228
>gi|254501830|ref|ZP_05113981.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
DFL-11]
gi|222437901|gb|EEE44580.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
DFL-11]
Length = 223
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 103/219 (47%), Positives = 134/219 (61%), Gaps = 1/219 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++L I + RP+ +V+L+AVSK ++ IR AL G +F EN++QEA
Sbjct: 4 VADQLSNVLSDIRKAEAEYGRPEGAVTLIAVSKTFEADAIRPALEAGHRVFGENRVQEAM 63
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW LR +D ++L IG LQSNK E V+ FDVI TV R+K A L EM KQ R LP
Sbjct: 64 GKWPELRGSYDGIELHLIGPLQSNKAKEAVATFDVIHTVDRQKIAKALKAEMDKQGRDLP 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+IQVNTG E QK+GI P + FV C+ LN+ GLMCIPP P HF LL +IA
Sbjct: 124 CFIQVNTGEEPQKAGIPPKEVDQFVKECKDTVGLNIVGLMCIPPVDEAPGEHFALLQKIA 183
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+++SMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 184 ARNGLSQISMGMSSDYETAVGFGATHVRVGSAIFGSRDY 222
>gi|226938967|ref|YP_002794038.1| hypothetical protein LHK_00033 [Laribacter hongkongensis HLHK9]
gi|226713891|gb|ACO73029.1| Ala_racemase_N domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 233
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 106/229 (46%), Gaps = 8/229 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + L +I + A RP SV L+AVSK ++ +R A +CGQ F EN +QE
Sbjct: 3 LSIQDALASVTSRIRAAETAAARPSGSVRLLAVSKTFPAEAVREAYACGQRAFGENYVQE 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + + +V R K A LS + L
Sbjct: 63 LAGKAAALADLPGLEWHFIGPLQSNKTRSVAETAHWVHSVERLKIAERLSAQRPDHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVN E KSG P + + +L + GLMCIP + + +
Sbjct: 123 QVCVQVNVSGEASKSGCTPAEAPALARAVARLPRLVLRGLMCIPDPAAPAEELARQFAGL 182
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L LSMGM+ D E AIA G+T VR+G+ IFG R
Sbjct: 183 QQMHARLEADGLMLDTLSMGMSADLESAIAHGSTCVRVGTAIFGARHYP 231
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040478|gb|ACT57274.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE
Sbjct: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL
Sbjct: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI
Sbjct: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT
Sbjct: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
>gi|332142462|ref|YP_004428200.1| alanine racemase domain protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552484|gb|AEA99202.1| alanine racemase domain protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 232
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ I+ +A A RP +SV L+AVSK I A GQ +F EN +QE
Sbjct: 3 TIAERLNSARKGIDQAANSAHRPPNSVKLLAVSKTKPVSDIIEAYEAGQRMFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L +++ IG +QSNK + FD +++V REK A L+ + + L
Sbjct: 63 VEKVQELSNLDNIEWHMIGPIQSNKTKVVAEHFDWVQSVDREKIARRLNEQRPESLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E KSG+ ++ V + +L + GLM IP P + L
Sbjct: 123 VCIQVNVDDEDSKSGVSLSELASLVEFVSSQERLCLRGLMAIPKANPDDEQQRQTLSKLK 182
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ LS+GM+ D AI G+T VR+G+ IFG+R
Sbjct: 183 ELFDHYHTSLSNFDTLSVGMSSDMVEAIHHGSTMVRVGTAIFGKRDYP 230
>gi|121590705|ref|ZP_01678037.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153819160|ref|ZP_01971827.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153826571|ref|ZP_01979238.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|227080671|ref|YP_002809222.1| hypothetical protein VCM66_0446 [Vibrio cholerae M66-2]
gi|229507099|ref|ZP_04396605.1| hypothetical protein VCF_002321 [Vibrio cholerae BX 330286]
gi|298501008|ref|ZP_07010809.1| YggS family pyridoxal phosphate enzyme [Vibrio cholerae MAK 757]
gi|121547436|gb|EAX57545.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126510305|gb|EAZ72899.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|149739663|gb|EDM53877.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|227008559|gb|ACP04771.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229355844|gb|EEO20764.1| hypothetical protein VCF_002321 [Vibrio cholerae BX 330286]
gi|297540256|gb|EFH76316.1| YggS family pyridoxal phosphate enzyme [Vibrio cholerae MAK 757]
Length = 236
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI P Q L + L + GLM IP + + S
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|153814893|ref|ZP_01967561.1| hypothetical protein RUMTOR_01108 [Ruminococcus torques ATCC 27756]
gi|317500406|ref|ZP_07958630.1| YggS family Pyridoxal phosphate enzyme [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089587|ref|ZP_08338486.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847924|gb|EDK24842.1| hypothetical protein RUMTOR_01108 [Ruminococcus torques ATCC 27756]
gi|316898161|gb|EFV20208.1| YggS family Pyridoxal phosphate enzyme [Lachnospiraceae bacterium
8_1_57FAA]
gi|330404955|gb|EGG84493.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
3_1_46FAA]
Length = 230
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +++I+++ A R ++ ++L+AVSK ++ A G IF ENK+QE +
Sbjct: 2 LKENLKTVEERIQSACKKAGRKREEITLIAVSKTKPPHMLQEAYDLGVRIFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D+ IG LQ+NKV IV +I +V K ++ E KQ+R + +
Sbjct: 62 EKYE--VLPKDIDWHMIGHLQTNKVKYIVDKVKLIHSVDSFKLGEVIEKEAAKQNRIIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G+ + + Q + V+GLM I P + NP+ + + +++ +
Sbjct: 120 LLEVNVAQESSKFGLKTEEVIPLMEKFSQLPHIRVKGLMTIAPFVENPEENRAIFADLHK 179
Query: 183 ------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LSMGMT D+E+AI GAT VRIG+GIFG R
Sbjct: 180 LYVDIKQKNIDNGTVSILSMGMTNDYEVAIEEGATMVRIGTGIFGARNYN 229
>gi|325294730|ref|YP_004281244.1| hypothetical protein Dester_0534 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065178|gb|ADY73185.1| protein of unknown function UPF0001 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 228
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K++IE + AKR D V ++A SK ++IR A G +F EN++QE
Sbjct: 1 MGIRENVKRIKERIEKACERAKRNPDEVFILAASKTRAPEEIRKAFEAGIKLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A ++ IPL + ++ IG LQ NKV V+LF VIE+V ++ A L + K + L
Sbjct: 61 A-REKIPLLSDIPIEWHMIGHLQKNKVKYAVNLFKVIESVDSKELADELEKRLSKIGKKL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V+I+V E K G PN+ ++ + L+++GLM +PP + +P+F L
Sbjct: 120 EVFIEVKLSPEETKHGCSPNEVEELARYVLELKHLDLKGLMTVPPYFEDVELVRPYFRRL 179
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I K+ LSMGM+ DFE+A+ GAT VRIG+ IFG R
Sbjct: 180 RKIRDRLEDSLGMKIPHLSMGMSHDFEVAVEEGATIVRIGTAIFGPRNY 228
>gi|121728581|ref|ZP_01681602.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147673920|ref|YP_001215987.1| hypothetical protein VC0395_A0013 [Vibrio cholerae O395]
gi|153216285|ref|ZP_01950378.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|262167145|ref|ZP_06034859.1| hypothetical protein VIJ_000305 [Vibrio cholerae RC27]
gi|297580600|ref|ZP_06942526.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|121629137|gb|EAX61580.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114374|gb|EAY33194.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|146315803|gb|ABQ20342.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012314|gb|ACP08524.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262024445|gb|EEY43132.1| hypothetical protein VIJ_000305 [Vibrio cholerae RC27]
gi|297535016|gb|EFH73851.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 236
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI P Q L + L + GLM IP + + S
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|325265726|ref|ZP_08132415.1| YggS family pyridoxal phosphate enzyme [Kingella denitrificans ATCC
33394]
gi|324982857|gb|EGC18480.1| YggS family pyridoxal phosphate enzyme [Kingella denitrificans ATCC
33394]
Length = 235
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 101/229 (44%), Gaps = 8/229 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +Q+I +A+ A+R S+ L+AVSK + IR GQ F EN +QE
Sbjct: 6 MSLLPAYTEVRQRIVQAALNARRDPGSLQLIAVSKTFPADDIRELYGLGQRDFGENYIQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ IG +QSNK + + T+ K A L+ + + L
Sbjct: 66 WWQKTEQLADCPDICWHIIGQVQSNKSRYVAERAHWLHTLDNVKLARRLNNQRPEHLPPL 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V I++N + K GI D +L + GLMC+ A + + +
Sbjct: 126 QVCIEINIAQDANKHGIAAEALDDLAREVAGLPRLKLRGLMCVAQADADETVLRQQFTAM 185
Query: 181 AREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 186 RQHLARLQTIAPHADTLSMGMSGDLECAIACGATMVRIGTALFGRRHYP 234
>gi|294671422|ref|ZP_06736271.1| hypothetical protein NEIELOOT_03130 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306899|gb|EFE48142.1| hypothetical protein NEIELOOT_03130 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 231
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 103/228 (45%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + I +A A RP +SV LVAV K + IR + GQ F EN +QE
Sbjct: 3 TLQQNYRNVCSNIARAAAEAGRPSESVRLVAVGKTFPAGDIREVYAAGQRDFGENYIQEW 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+ IG +QSNK + + T+ R KTA LS++ + L
Sbjct: 63 YEKTEDLADLSDIVWHIIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSVQRPYKMPPLQ 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLS 178
V I+VN E K G+ P++ + L + GLMC+ A +
Sbjct: 123 VCIEVNIAGEAAKHGVAPDEAVALACEVAKLPNLKMRGLMCVAKADAGEAELREAFGRMR 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E LSMGM+ D E+A+A GAT VRIGS IFG R
Sbjct: 183 ALLAELNAAGVVADVLSMGMSGDMEIAVACGATHVRIGSAIFGRRDYS 230
>gi|284922894|emb|CBG35983.1| putative amino acid racemase [Escherichia coli 042]
Length = 234
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATSCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|167758168|ref|ZP_02430295.1| hypothetical protein CLOSCI_00506 [Clostridium scindens ATCC 35704]
gi|167664065|gb|EDS08195.1| hypothetical protein CLOSCI_00506 [Clostridium scindens ATCC 35704]
Length = 231
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + KI+ + R +D V+L+AVSK + ++ A G IF ENK+QE
Sbjct: 2 LKENLEAVESKIQAACHSCGRSRDEVTLIAVSKTKPVETLKEAHDLGVRIFGENKVQELS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ IG LQ NKV I+ D+I +V + A + E K+ V
Sbjct: 62 DKHD--LLPQDIHWHMIGHLQRNKVKYIIDKVDLIHSVDSLRLAEAIEKEAAKRDLVANV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G+MP + +F+ + V+GLM I P + NP+ + + + + +
Sbjct: 120 LLEVNVAKEESKFGLMPEEVFEFIDKIAGFSHIQVKGLMTIAPFVDNPEENRPIFARLRK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+++AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAEKNVDNITMSILSMGMTNDYQVAIEEGATMVRVGTGIFGARDY 228
>gi|86158925|ref|YP_465710.1| hypothetical protein Adeh_2503 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775436|gb|ABC82273.1| protein of unknown function UPF0001 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 227
Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 10/219 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + ++ V+LVAVSK + IR A + GQ F EN QE
Sbjct: 6 SIADRLAAIRAEL----------PAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEW 55
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L ++ FIG LQ+NK + ++ V RE+ A+ LS ++
Sbjct: 56 RAKADALADLPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATAR 115
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V ++VN G E K G P++ + R + + GLMCIPP +P+PHF L +
Sbjct: 116 VLLEVNVGGEASKEGCPPDRVEALAAAVRALPSVELAGLMCIPPPADDPRPHFRALRALR 175
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D+ +A+ GAT VR+GS IFG RP
Sbjct: 176 DRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARPP 214
>gi|332086880|gb|EGI92016.1| hypothetical protein SB521682_3506 [Shigella boydii 5216-82]
Length = 234
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTRLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|218706466|ref|YP_002413985.1| hypothetical protein ECUMN_3303 [Escherichia coli UMN026]
gi|293406458|ref|ZP_06650384.1| UPF0001 protein yggS [Escherichia coli FVEC1412]
gi|298382195|ref|ZP_06991792.1| yggS protein [Escherichia coli FVEC1302]
gi|331664534|ref|ZP_08365440.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA143]
gi|218433563|emb|CAR14466.1| putative enzyme [Escherichia coli UMN026]
gi|291426464|gb|EFE99496.1| UPF0001 protein yggS [Escherichia coli FVEC1412]
gi|298277335|gb|EFI18851.1| yggS protein [Escherichia coli FVEC1302]
gi|331058465|gb|EGI30446.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA143]
Length = 234
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAQAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|153835263|ref|ZP_01987930.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148868238|gb|EDL67378.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 236
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I + R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKCGRSPESVQLLAVSKTKPVEAILEAYQAGQEAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSG+ + + L + L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEESKSGVADAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLEELKQKLAQQYPDVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 233
>gi|189347291|ref|YP_001943820.1| alanine racemase domain protein [Chlorobium limicola DSM 245]
gi|189341438|gb|ACD90841.1| alanine racemase domain protein [Chlorobium limicola DSM 245]
Length = 229
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L +Q+I ++ + A+R +V+L+AVSK + +IR A GQ+ F E+ +QE
Sbjct: 3 SITENLDAIRQRIAHACLKARRDPATVTLLAVSKTKSASRIREAFDAGQIDFGESYMQEF 62
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ PL + ++ FIG LQSNKV I+ +I + + TA LS ++Q+
Sbjct: 63 LDKESDPLLENQPIRWHFIGHLQSNKVRSIIGKVVLIHGIDKLSTAEELSGRAVRQNLQA 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P + + GLM I P + F LS
Sbjct: 123 DYLLEVNTSGEASKYGLKPEELLRQAPSFFMLPNCTLRGLMTIASPDPALARYEFRSLSR 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LT+LSMGM++DFE AIA GAT +R+G+ IFG R
Sbjct: 183 LLDDLKKIAPDPSTLTELSMGMSQDFEAAIAEGATLIRVGTAIFGWR 229
>gi|150398389|ref|YP_001328856.1| alanine racemase domain-containing protein [Sinorhizobium medicae
WSM419]
gi|150029904|gb|ABR62021.1| alanine racemase domain protein [Sinorhizobium medicae WSM419]
Length = 219
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 112/219 (51%), Positives = 148/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A R +++VSLVAVSK D+ I + GQ +F EN++QE
Sbjct: 1 MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 AQSKWPALKGRTPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQERE 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P T FV CR++ L++EGLMCIPP NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEGLMCIPPLDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L++LSMGM+ DFE AIA GATSVR+GS IFG R
Sbjct: 181 LASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR 219
>gi|156975833|ref|YP_001446740.1| hypothetical protein VIBHAR_03578 [Vibrio harveyi ATCC BAA-1116]
gi|156527427|gb|ABU72513.1| hypothetical protein VIBHAR_03578 [Vibrio harveyi ATCC BAA-1116]
Length = 236
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I + R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKCGRSPESVQLLAVSKTKPVEAILEAYQAGQEAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VGKVQHFAEHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L IQVNT E KSG+ + + L + L + GLM IP P + F
Sbjct: 123 PLQALIQVNTSGEESKSGVADAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLEELKQKLAQQYPDVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 233
>gi|293449281|ref|ZP_06663702.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B088]
gi|291322371|gb|EFE61800.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B088]
Length = 234
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIALNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|114046770|ref|YP_737320.1| hypothetical protein Shewmr7_1264 [Shewanella sp. MR-7]
gi|113888212|gb|ABI42263.1| Protein of unknown function UPF0001 [Shewanella sp. MR-7]
Length = 238
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 111/228 (48%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQCRIAQAAQKCARLPHSIRLLAVSKTKPIEDIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ FIG LQSNK + + FD + T+SREK A L+ + Q L
Sbjct: 63 VTKIETLKSTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAQLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LSE+
Sbjct: 123 NVCIQINISDEDTKSGIDAEQMLPLAHSISQLPHLQLRGLMAIPSATNDTAQQSRELSEL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D ++AI G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVRIGSAIFGERDY 230
>gi|306844788|ref|ZP_07477373.1| conserved hypothetical protein [Brucella sp. BO1]
gi|306274960|gb|EFM56730.1| conserved hypothetical protein [Brucella sp. BO1]
Length = 226
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 116/224 (51%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ ++LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWAGIELHLIGPLQSNKAADAIALFDVIETVDREKIAAALATEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R T
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYST 224
>gi|118581657|ref|YP_902907.1| alanine racemase domain-containing protein [Pelobacter propionicus
DSM 2379]
gi|118504367|gb|ABL00850.1| alanine racemase domain protein [Pelobacter propionicus DSM 2379]
Length = 228
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 84/229 (36%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L +++I +A+ A R + V LVAVSK + + A GQ+IF EN +QE
Sbjct: 1 MSIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K ++K V+ FIG LQSNKV +I L +I +V R A +S + + S
Sbjct: 61 LRAKAPEVKKS--VEWHFIGHLQSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVN EI KSG V L + GLM +PP +P +P F L
Sbjct: 119 DILVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMTMPPFFDDPEAARPFFAGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + +LSMGM+ DFE AI GAT VR+G+ IFGER
Sbjct: 179 RQLAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGER 227
>gi|15640488|ref|NP_230115.1| hypothetical protein VC0461 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153802601|ref|ZP_01957187.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153823179|ref|ZP_01975846.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|229509065|ref|ZP_04398553.1| hypothetical protein VCE_000468 [Vibrio cholerae B33]
gi|229519733|ref|ZP_04409176.1| hypothetical protein VCC_003765 [Vibrio cholerae RC9]
gi|229606245|ref|YP_002876893.1| hypothetical protein VCD_001146 [Vibrio cholerae MJ-1236]
gi|254291172|ref|ZP_04961968.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254850692|ref|ZP_05240042.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744292|ref|ZP_05418245.1| hypothetical protein VCH_000603 [Vibrio cholera CIRS 101]
gi|262147283|ref|ZP_06028082.1| hypothetical protein VIG_000131 [Vibrio cholerae INDRE 91/1]
gi|12230811|sp|Q9KUQ4|Y461_VIBCH RecName: Full=UPF0001 protein VC_0461
gi|9654886|gb|AAF93634.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124121864|gb|EAY40607.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|126519305|gb|EAZ76528.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|150422866|gb|EDN14817.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|229344422|gb|EEO09397.1| hypothetical protein VCC_003765 [Vibrio cholerae RC9]
gi|229353990|gb|EEO18924.1| hypothetical protein VCE_000468 [Vibrio cholerae B33]
gi|229368900|gb|ACQ59323.1| hypothetical protein VCD_001146 [Vibrio cholerae MJ-1236]
gi|254846397|gb|EET24811.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738232|gb|EET93624.1| hypothetical protein VCH_000603 [Vibrio cholera CIRS 101]
gi|262031277|gb|EEY49892.1| hypothetical protein VIG_000131 [Vibrio cholerae INDRE 91/1]
gi|327483315|gb|AEA77722.1| Hypothetical protein YggS, proline synthase co- transcribed
bacterial-like protein PROSC [Vibrio cholerae LMA3894-4]
Length = 236
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVNMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|331654463|ref|ZP_08355463.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M718]
gi|331047845|gb|EGI19922.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M718]
Length = 234
Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYSHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|225567964|ref|ZP_03776989.1| hypothetical protein CLOHYLEM_04037 [Clostridium hylemonae DSM
15053]
gi|225163252|gb|EEG75871.1| hypothetical protein CLOHYLEM_04037 [Clostridium hylemonae DSM
15053]
Length = 231
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ KL+ +++I + A R + V+L+AVSK + +R A G +F ENK+QE
Sbjct: 2 MKEKLENVEERIRAACERAGRNRSEVTLIAVSKTKPVETLREAYGLGVRVFGENKVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ NKV I+ ++I +V + A + E K + +
Sbjct: 62 DKYGA--LPEDIHWHMIGHLQRNKVKYIIDKAELIHSVDSLRLAETIEKEAEKHNITANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+MP + + V LNV+GLM I P + NP+ + + + + +
Sbjct: 120 LIEVNVAREESKFGVMPEELDEIVEKIAGFNHLNVKGLMTIAPYVENPEENRAVFARLRK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+E+A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIASKNVDNMNMSILSMGMTNDYEVAVEEGATMVRVGTGIFGERDY 228
>gi|89091926|ref|ZP_01164881.1| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92]
gi|89083661|gb|EAR62878.1| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92]
Length = 236
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q+I ++A+ + R + ++L+AVSK + +R A GQ F EN LQE+
Sbjct: 3 SIAKNLEKVRQQIADTAVQSNRQSNEITLLAVSKTRPADDLRSAYEEGQRHFGENYLQES 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+ FIG LQSNK + FD + TV R K A LS + +Q L
Sbjct: 63 LEKIQSLSDL-DICWHFIGPLQSNKTRTVAENFDWMHTVDRLKIAQRLSAQRPEQLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P Q + Q +++ GLM IP A +PK ++
Sbjct: 122 ICIQVNISNEDSKSGCSPEQVAELADQISQLPNISLRGLMAIPKASSDPKEQAEAFQKMR 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+L LSMGM+ D AI++G+T VR+G+ IFG RP +
Sbjct: 182 LLQLELQQSHPQLDTLSMGMSGDMNEAISAGSTIVRVGTAIFGPRPPK 229
>gi|260438390|ref|ZP_05792206.1| pyridoxal phosphate enzyme, YggS family [Butyrivibrio crossotus DSM
2876]
gi|292808976|gb|EFF68181.1| pyridoxal phosphate enzyme, YggS family [Butyrivibrio crossotus DSM
2876]
Length = 230
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L+ +++EN+A A R + ++L+AVSK + I+ G F ENK+QE
Sbjct: 2 VTDNLKKVIERMENAAKRAGRNPEDITLIAVSKTKPVELIKQVYDAGIREFGENKVQEID 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D++ IG LQ NKV ++ +I +V + A +S + +PV
Sbjct: 62 RKSE--ILPKDIKWHMIGHLQRNKVKTVIKEACLIHSVDSIRLAEQISKDAATLGISVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G +T+ ++ + + V GLM P NP+ + + +
Sbjct: 120 LLEVNIACEESKYGFKAEETEAALVEIAKLPNITVRGLMTSAPITDNPEDNRIYFKALKQ 179
Query: 183 EC-----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
C + LSMGMT DFE+A+ GAT +R+G+ IFGER
Sbjct: 180 LCVDLKAKNIDNTSMDFLSMGMTGDFEVAVEEGATHIRVGTAIFGERDYS 229
>gi|313501070|gb|ADR62436.1| Alanine racemase domain protein [Pseudomonas putida BIRD-1]
Length = 228
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 100/226 (44%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + L +I +++ R SV L+AVSK + IR + G F EN LQ
Sbjct: 1 MSTLADNLSAISARIASASQAVGRDPASVQLLAVSKTKPASAIREIHAAGVHDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALTKQQALSDL-PLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPEPTEDRATQEAAFAS 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRKLQEGLGFGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|325263919|ref|ZP_08130652.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. D5]
gi|324030957|gb|EGB92239.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. D5]
Length = 232
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +QKI+ + A R ++ V+L+AVSK ++ A G IF ENK+QE
Sbjct: 2 LKEQLEEVEQKIQAACDRAGRKREEVTLIAVSKTKPIAVLQEAYDAGVRIFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ+NKV IV ++I +V K A ++ E K++ +
Sbjct: 62 DKYDA--LPDDIHWHMIGHLQTNKVKYIVDKAELIHSVDSLKLAQVIEKEAEKKNCTARI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ ++ F+ + V GLM I P + NP+ + + + +
Sbjct: 120 LIEVNVAGEESKFGLNVDEVIPFIEKIASFKHIRVCGLMTIAPFVENPEENRPIFENLHK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ LSMGMT D+E+AI GAT VR+G+GIFG R +
Sbjct: 180 LSVDIKNKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGARDYTS 230
>gi|290476320|ref|YP_003469224.1| PLP-binding domain-containing protein [Xenorhabdus bovienii
SS-2004]
gi|289175657|emb|CBJ82460.1| putative enzyme with PLP-binding domain [Xenorhabdus bovienii
SS-2004]
Length = 233
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I +A R ++L+AVSK + I A+ GQ F EN ++E
Sbjct: 3 NIEQNLHDVRNRIALTAQKCGRYPQEITLLAVSKTKPADAIAKAIETGQREFGENYVREG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A LS + + L
Sbjct: 63 VEKVQHFANHNDLVWHFIGPLQSNKSRLVAEHFDWCHTIDRLKIAQRLSEQRPENMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI+ + L + GLM IP + + + ++
Sbjct: 123 ILIQINISGEDSKSGIILTALPELAKTINALPNLVLRGLMAIPAPESDFERQMAIFHQME 182
Query: 182 REC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ LSMGMT D E AI+ G+T VRIG+ IFG R T
Sbjct: 183 QAFIELKTQYPRVDTLSMGMTDDMEAAISCGSTLVRIGTAIFGARQYNT 231
>gi|153810902|ref|ZP_01963570.1| hypothetical protein RUMOBE_01286 [Ruminococcus obeum ATCC 29174]
gi|149833298|gb|EDM88380.1| hypothetical protein RUMOBE_01286 [Ruminococcus obeum ATCC 29174]
Length = 230
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ IE + R V+L++VSK ++ A G F ENK+QE
Sbjct: 2 ITENLEQVRKNIEEACRAVNRDPGEVTLISVSKTKPVSMLQEAYDAGSRDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ IG LQ NKV IV +I +V + A + E K + +P+
Sbjct: 62 DKYPQ--LPSDIRWHMIGHLQRNKVKYIVDKVALIHSVDSLRLAETIENEAAKHNVTVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + V +N++GLM I P + +P+ + + ++ +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLSLVESVAALPHINIKGLMTIAPYVEDPEENRGIFRQLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNINNVNMSVLSMGMTGDYQVAVQEGATMVRVGTGIFGERDYS 229
>gi|268317716|ref|YP_003291435.1| alanine racemase domain-containing protein [Rhodothermus marinus
DSM 4252]
gi|262335250|gb|ACY49047.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252]
Length = 244
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L +++IE + A R D V+L+ V+K ++ A G F EN++QE
Sbjct: 12 IRERLAWIQERIERACRRAGRSPDEVTLIGVTKTFPVAVVQAAYEAGLRHFGENRVQELV 71
Query: 63 KKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + +V IG LQ NK ++V+ D + ++ + A L R
Sbjct: 72 AKAAVLPGRIEGGEVTWHMIGHLQRNKARDVVAHADWLHSLDNLRLAETLERRAAMADRV 131
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
LP +++VN E K G+ P+ DF+ L + GLM + +P+
Sbjct: 132 LPCFVEVNVSGEPTKFGLEPDAVHDFLDALAPFEHLEIVGLMTLAAPAEDPEAVRPQFRL 191
Query: 180 IAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ R +L LSMGM+ DFE+AI GAT VRIGS +FG R
Sbjct: 192 LRRLAETYDRRNNPRVQLRYLSMGMSGDFEVAIEEGATHVRIGSALFGPR 241
>gi|110635537|ref|YP_675745.1| hypothetical protein Meso_3208 [Mesorhizobium sp. BNC1]
gi|110286521|gb|ABG64580.1| Protein of unknown function UPF0001 [Chelativorans sp. BNC1]
Length = 225
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 110/219 (50%), Positives = 140/219 (63%), Gaps = 1/219 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + ++ + A R V+LVAVSK + +I + GQ +F EN++QEA+
Sbjct: 5 AQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQEAQG 64
Query: 64 KWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW D++L IG LQSNK E V+LFDVIETV REK A+ L+ EM KQ R L +
Sbjct: 65 KWPGLKEAFPDIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRL 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Y+QVNTG E QK+GI P +T FV CR+ + L +EGLMCIPP NP PHF LL ++AR
Sbjct: 125 YVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIEGLMCIPPLDENPGPHFALLEKLAR 184
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E + KLSMGM+ DFE AIA GATS+R+GS IFG R
Sbjct: 185 EAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYS 223
>gi|229512523|ref|ZP_04401994.1| hypothetical protein VCB_000163 [Vibrio cholerae TMA 21]
gi|229530303|ref|ZP_04419691.1| protein of unknown function [Vibrio cholerae 12129(1)]
gi|229332076|gb|EEN97564.1| protein of unknown function [Vibrio cholerae 12129(1)]
gi|229350416|gb|EEO15365.1| hypothetical protein VCB_000163 [Vibrio cholerae TMA 21]
Length = 236
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|262172425|ref|ZP_06040103.1| hypothetical protein VII_003254 [Vibrio mimicus MB-451]
gi|261893501|gb|EEY39487.1| hypothetical protein VII_003254 [Vibrio mimicus MB-451]
Length = 236
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQRAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ R+ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQRQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|59711037|ref|YP_203813.1| hypothetical protein VF_0430 [Vibrio fischeri ES114]
gi|59479138|gb|AAW84925.1| predicted enzyme [Vibrio fischeri ES114]
Length = 236
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ + +IENS R DSV L+AVSK + + A+ GQ IF EN +QE
Sbjct: 3 SIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + ++ FIG +QSNK I FD + +V R K A L+ + +
Sbjct: 63 IEKVQYFQKQHSTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSELG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG + + + L + GLM IP + N
Sbjct: 123 ELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R +
Sbjct: 183 QLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYK 233
>gi|197301725|ref|ZP_03166795.1| hypothetical protein RUMLAC_00451 [Ruminococcus lactaris ATCC
29176]
gi|197299165|gb|EDY33695.1| hypothetical protein RUMLAC_00451 [Ruminococcus lactaris ATCC
29176]
Length = 230
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++LQ +++I+ + A R ++ V+L+AVSK + ++ A G IF ENK+QE
Sbjct: 2 LKDQLQEVEKRIQAACDRAGRKREEVTLIAVSKTKPVETLQEAYDLGVRIFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ+NKV I+ ++I +V K A + E K +
Sbjct: 62 AKYEA--LPKDIHWHMIGHLQTNKVKYIIDKAELIHSVDSLKLAETIEKEAAKHDLIADI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G+ + FV + V GLM I P + +P+ + + +++ +
Sbjct: 120 LVEVNVAEEESKFGMKMEEVIPFVEKVSAFPHVRVRGLMTIAPFVEDPEENRSIFADLHK 179
Query: 183 -ECKLTK----------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LYIDIKKKNHDNDTVSVLSMGMTNDYEVAIEEGATMVRVGTGIFGARNY 228
>gi|149201521|ref|ZP_01878495.1| hypothetical protein RTM1035_03255 [Roseovarius sp. TM1035]
gi|149144569|gb|EDM32598.1| hypothetical protein RTM1035_03255 [Roseovarius sp. TM1035]
Length = 217
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +++ + A R V L+AVSK+ ++++ L G +F EN++QEA +W
Sbjct: 3 LSEIRARMDKACTAAGRAPQDVELIAVSKVQPAERVAAVLDQGHRVFGENRVQEAAGRWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + D+ L IG LQSNK + + +F I +V R K A ++ + R +++Q
Sbjct: 63 AFQDRYTDIVLHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQGIARLAQEMGRCPDLFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + FV CR L V+GLMCIPP P HF LL+++A
Sbjct: 123 VNTGEEPQKAGVLPQEIDGFVAECRA-LDLPVKGLMCIPPVEEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LSGLSMGMSGDFESAIAQGATHVRVGSAIFGERDY 216
>gi|254465811|ref|ZP_05079222.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
Y4I]
gi|206686719|gb|EDZ47201.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
Y4I]
Length = 216
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 94/215 (43%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++++ L G F ENK+QEA KW
Sbjct: 3 LDEIKSRIAKAEADAGRAPGSVKLIAVSKVQPNERVEAVLEEGHRCFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +D + L IG LQ+NK + + LFD I +V R K A+ L+ + ++IQ
Sbjct: 63 AFAERFDGIDLHLIGPLQTNKARQAMELFDSIHSVDRPKLANTLARLAQELGTCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+MP F+ CR L V+GLMCIPP P HF LL++IA+
Sbjct: 123 VNTGEEEQKAGVMPADADAFIAECRA-LDLPVKGLMCIPPVDEEPSLHFALLAKIAKRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LQGLSMGMSGDFETAIALGATHVRVGSAIFGARTY 216
>gi|255067482|ref|ZP_05319337.1| pyridoxal phosphate enzyme, YggS family [Neisseria sicca ATCC
29256]
gi|255048277|gb|EET43741.1| pyridoxal phosphate enzyme, YggS family [Neisseria sicca ATCC
29256]
Length = 235
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L ++I + A R V L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYAEVCRRIAEAEQKAGRQAGEVGLIAVSKTFPSDDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWYEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ A + + F
Sbjct: 121 LQVCIEVNIAGEEAKHGVAPDEAVALAVEVAKLPNVVVRGLMCVAKADSDDEELRVQFQT 180
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + LSMGM+ D +A+A GAT VRIGS IFG R +
Sbjct: 181 MQKLLADLNAAGVHADVLSMGMSDDMPVAVACGATHVRIGSAIFGRREPK 230
>gi|170765703|ref|ZP_02900514.1| alanine racemase family [Escherichia albertii TW07627]
gi|170124849|gb|EDS93780.1| alanine racemase family [Escherichia albertii TW07627]
Length = 234
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A+ R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISTAAMRCGRSPEEITLLAVSKTKPASAIAEAIDAGQREFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ +Q FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGPKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|186477265|ref|YP_001858735.1| alanine racemase domain-containing protein [Burkholderia phymatum
STM815]
gi|184193724|gb|ACC71689.1| alanine racemase domain protein [Burkholderia phymatum STM815]
Length = 232
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 108/229 (47%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L Q+I +A +A R S++L+AVSK ++ +R A GQ F EN +QEA
Sbjct: 3 DLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIGALSDLRASLAWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAPAL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QVN E KSG+ P + D +L + GLM IP + L
Sbjct: 123 NVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRGLMAIPEPAGDVEQQRVPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|149915694|ref|ZP_01904220.1| hypothetical protein RAZWK3B_07052 [Roseobacter sp. AzwK-3b]
gi|149810586|gb|EDM70429.1| hypothetical protein RAZWK3B_07052 [Roseobacter sp. AzwK-3b]
Length = 217
Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 90/221 (40%), Positives = 126/221 (57%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L+ + +I + A R + SV+L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MS----LEDIRNRIHKAERAAGRVEGSVTLIAVSKVQPNERVEAVLEMGHRCFGENRVQE 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R + + L IG LQ+NK + LF I +V R K AS ++ ++
Sbjct: 57 AAGKWPEFRERFQGIDLHLIGPLQTNKARQAFDLFQTIHSVDRPKLASTIARIAQEEGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G++P F+ C+ L V+GLMCIPP P HF LL++
Sbjct: 117 PDIFLQVNTGEEDQKAGVLPADADKFINDCKGM-DLPVQGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 176 IAERNGLQGLSMGMSGDFEEAIALGATHVRVGSAIFGARDY 216
>gi|307728514|ref|YP_003905738.1| alanine racemase domain-containing protein [Burkholderia sp.
CCGE1003]
gi|307583049|gb|ADN56447.1| alanine racemase domain protein [Burkholderia sp. CCGE1003]
Length = 232
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIATAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++ FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIEALGDLRTSLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPEHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLL 177
V +QVN E KSG+ + +L + GLM IP + + L
Sbjct: 123 NVCLQVNISGEASKSGVSAEEALQVAKEIAALPRLRLRGLMAIPEPAGNIDQQRVPHRRL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRDDGLPLDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|262164087|ref|ZP_06031826.1| hypothetical protein VMA_000528 [Vibrio mimicus VM223]
gi|262027615|gb|EEY46281.1| hypothetical protein VMA_000528 [Vibrio mimicus VM223]
Length = 236
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQFALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIAVRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|261210038|ref|ZP_05924336.1| hypothetical protein VCJ_000280 [Vibrio sp. RC341]
gi|260840803|gb|EEX67345.1| hypothetical protein VCJ_000280 [Vibrio sp. RC341]
Length = 236
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + +V L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSTVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A L+ + +
Sbjct: 63 VDKIRYFAEQYPQLALEWHFIGPLQSNKTRLMAEHFDWVHTIEREKIAVRLNEQRPADMQ 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|283797927|ref|ZP_06347080.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
gi|291074395|gb|EFE11759.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
Length = 234
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++I + + R + V+L++VSK + ++ A G F EN +QE
Sbjct: 2 IRENLEEVRERIRLACERSGRRVEDVTLISVSKTKPVEMLQEAYEAGSRDFGENHVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + DV+ IG LQ NKV +++ +I +V A + E K+ + +
Sbjct: 62 EKHGQMPE--DVRWHMIGHLQKNKVRQVIDKVVLIHSVDTVGLAEQIEKEAAKKDLDIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G P + ++ V ++++GLM I P + N + + + ++
Sbjct: 120 LLEVNVAGEESKFGFCPEEVEEAVRKISLLPHVHIKGLMTIAPFVVNSEDNREVFKKLYN 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+E+AI GAT +R+G+GIFG R
Sbjct: 180 LYVDIRGKNIDNVSMSVLSMGMTGDYEVAIEEGATMIRVGTGIFGAR 226
>gi|229519847|ref|ZP_04409281.1| hypothetical protein VIF_000361 [Vibrio cholerae TM 11079-80]
gi|229343135|gb|EEO08119.1| hypothetical protein VIF_000361 [Vibrio cholerae TM 11079-80]
Length = 236
Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 IDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPMDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI P Q L + L + GLM IP + + +
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|254226314|ref|ZP_04919905.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125621176|gb|EAZ49519.1| conserved hypothetical protein [Vibrio cholerae V51]
Length = 236
Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 113/230 (49%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDY 232
>gi|240146310|ref|ZP_04744911.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
L1-82]
gi|257201551|gb|EEU99835.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
L1-82]
gi|291536184|emb|CBL09296.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
M50/1]
gi|291538951|emb|CBL12062.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
XB6B4]
Length = 231
Score = 184 bits (467), Expect = 6e-45, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++ IE + A R +D V+L+AVSK + ++ F ENK+QE
Sbjct: 2 LKENLANVEKNIEQACKNAGRSRDEVTLIAVSKTKPVEMLQEIYDENIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D++ IG LQ NKV IV ++I +V + A ++++ KQ+ +P+
Sbjct: 62 SKMEQ--LPSDIRWHMIGHLQRNKVKYIVGKVELIHSVDTYRLAEEINIQAKKQNVIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN +E K GI V + + ++GLM I P + NP+ + +I
Sbjct: 120 LVEVNIAHEESKFGISAEDAILLVEEISKLENIRIKGLMTIAPYVENPEDNRLYFRKIKQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +AI GAT VR+G+GIFGER +
Sbjct: 180 LSVDITNKNIDNVFMEILSMGMTGDYMVAIEEGATMVRVGTGIFGERNYK 229
>gi|300024797|ref|YP_003757408.1| alanine racemase domain protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299526618|gb|ADJ25087.1| alanine racemase domain protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 226
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 144/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L+ + +I +A KR + L+AVSK D+ +R L+ GQ +F EN++QEA++K
Sbjct: 12 DRLKRVRHEIVAAAEAVKRSPADIELIAVSKTFDADAVRPVLAAGQRVFGENRVQEAERK 71
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L++E+ DV+L IG LQSNK + V+LFDVI T+ REK A ++ E+ +Q R L ++
Sbjct: 72 WPELKREFADVELHLIGPLQSNKAKDAVALFDVIHTIDREKIARAVAEEISRQGRALKLF 131
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+G+ P++ K FV CR +L + GLMCIPP P HF L+++A+E
Sbjct: 132 VQVNTGEEPQKAGVPPSEAKAFVDFCRSDLKLPIVGLMCIPPVDEEPAVHFAFLAKLAKE 191
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 192 GGLKSLSMGMSSDFETAIAFGATHVRVGSAIFGGR 226
>gi|225378092|ref|ZP_03755313.1| hypothetical protein ROSEINA2194_03752 [Roseburia inulinivorans DSM
16841]
gi|225210093|gb|EEG92447.1| hypothetical protein ROSEINA2194_03752 [Roseburia inulinivorans DSM
16841]
Length = 231
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L+ +++++ + A R ++ V+L+AVSK + ++ F ENK+QE
Sbjct: 2 LKDNLKNVEERVQEACDRAGRKREEVTLIAVSKTKPIEMLQEIYDENIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + K D++ IG LQ NKV IV +I +V + A ++++ K++ +P+
Sbjct: 62 DKIEKMPK--DIKWHMIGHLQRNKVKYIVGQVALIHSVDSYRLAEEINIQAKKKNIIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN +E K GI V + + ++GLM I P + N + + +I
Sbjct: 120 LVEVNIAHEESKFGISEEDAIQLVEEIAELENVRIKGLMTIAPYVENAEDNRLYFRKIKD 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAAKNIDNVSMEILSMGMTGDYEVAIEEGATMVRVGTGIFGARNYN 229
>gi|310820636|ref|YP_003952994.1| hypothetical protein STAUR_3375 [Stigmatella aurantiaca DW4/3-1]
gi|309393708|gb|ADO71167.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 221
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 85/223 (38%), Positives = 117/223 (52%), Gaps = 6/223 (2%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L + ++ ++ RP +SV+L+AVSK+ IR A + GQ F EN Q
Sbjct: 1 MSQVAERLADIQARVASACARVGRPVESVTLIAVSKLKPGALIREAYAAGQRDFGENYAQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L ++ IG LQ+NK + + + R + A LS +
Sbjct: 61 ELRDKATELEDLAGLRWHAIGPLQTNKAKYVARVAQSFHALDRMEVARELSKR--RLEAP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
LP Y++VN G E KSG+ P FV R L +EGLM +PP +P+ HF
Sbjct: 119 LPCYVEVNLGGEQSKSGLTPEALGAFVDEARVLPGLRLEGLMALPPPTPDPEQARGHFRR 178
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E+ARE L+ LSMG T DFE AI GAT VR+G+ IFGER
Sbjct: 179 LRELAREHGLSGLSMGTTHDFEQAIEEGATLVRVGTAIFGERD 221
>gi|194466523|ref|ZP_03072510.1| alanine racemase domain protein [Lactobacillus reuteri 100-23]
gi|194453559|gb|EDX42456.1| alanine racemase domain protein [Lactobacillus reuteri 100-23]
Length = 235
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 14/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKEVQEKIIAACKRSGRDPQDVQLLPVSKNHPAAGIAELYKAGWNNFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK D+ IG LQ NKV I +I++V K + + E K R +
Sbjct: 61 LAKKHDE--LPADINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRII 118
Query: 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P+ I+VN G E K G+ P + Q + + GLM P +P+ +
Sbjct: 119 PILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFR 178
Query: 179 EI----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 179 RLRELRDKMNKQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYS 231
>gi|291460492|ref|ZP_06599882.1| pyridoxal phosphate enzyme, YggS family [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291416864|gb|EFE90583.1| pyridoxal phosphate enzyme, YggS family [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 230
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ ++I + A R ++SV L+AVSK IR A+ G F EN++QE
Sbjct: 3 NISENLERISERIFAACERAGRKRESVELIAVSKTKPVSDIREAMRLGIRCFGENRVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K + ++ + IG LQ NKV + + ++I +V A + E K +
Sbjct: 63 RQKTAEIPEK--LHWHMIGVLQKNKVKYLPGMVEMIHSVDSLGLAQEIEKECKKHGISMD 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +VN G E K G++P + F+ + L + GLM + P + + +
Sbjct: 121 VLCEVNVGREESKGGVLPEELPGFLSEAVKLSHLRIRGLMTVAPIASEAEESRPIFRSLR 180
Query: 182 R----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +LSMGM+ DFE+AI GAT VRIGS IFG+R
Sbjct: 181 ELLESMNREIPALSMDQLSMGMSGDFEVAIEEGATLVRIGSAIFGDRHYS 230
>gi|53804165|ref|YP_113991.1| hypothetical protein MCA1536 [Methylococcus capsulatus str. Bath]
gi|53757926|gb|AAU92217.1| conserved hypothetical protein TIGR00044 [Methylococcus capsulatus
str. Bath]
Length = 229
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 80/224 (35%), Positives = 107/224 (47%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ +Q+I + RP+DSV LVAVSK + +R A GQ F EN LQEA
Sbjct: 4 LQENLQAVRQRIRAAEQACGRPEDSVRLVAVSKTQPAAVLRAAYDLGQREFGENYLQEAM 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ L + D+ FIG +QSNK + FD + ++ R K A L+ + L V
Sbjct: 64 -EKQDLLADLDIVWHFIGPIQSNKTRLLAERFDWVHSIDRLKIAQRLNDQRPPGRAPLNV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN G E KSG+ P + +L + GLM IP + + +
Sbjct: 123 CIQVNIGGEPTKSGVTPAAVAELAQAVAALPRLRLRGLMAIPAPTADEREQRAAFRRLRE 182
Query: 183 EC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E A+A G T VR+G+ IFG RP
Sbjct: 183 LLEGLGMPGLDTLSMGMSDDLEAAVAEGTTLVRVGTAIFGRRPP 226
>gi|127512070|ref|YP_001093267.1| alanine racemase domain-containing protein [Shewanella loihica
PV-4]
gi|126637365|gb|ABO23008.1| alanine racemase domain protein [Shewanella loihica PV-4]
Length = 233
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 117/228 (51%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L Q+I +A + R + L+AVSK +I A GQ +F EN +QE
Sbjct: 3 TIADRLADAHQRIAQAAQNSSRDSREIQLLAVSKTKPIDQIVAAYDAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K LR+ D++ FIG LQSNK I FD + T+SREK A LS + L
Sbjct: 63 EEKINALRESHGDIEWHFIGPLQSNKTKSIAEHFDWMHTLSREKIAKRLSEQRPSHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
V IQVN E KSG+ P++ + +L + GLM IP A + S+
Sbjct: 123 QVCIQVNVSQEQSKSGVNPDEVAHLAEIIASLPRLTLRGLMAIPTATDDVALQQAEFSQM 182
Query: 180 --IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K L LSMGM++D E AIA+G+T VRIGS IFG R
Sbjct: 183 QALFEALKQQHPSLDTLSMGMSQDLEQAIAAGSTMVRIGSAIFGARDY 230
>gi|239832888|ref|ZP_04681217.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|239825155|gb|EEQ96723.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
Length = 250
Score = 184 bits (467), Expect = 7e-45, Method: Composition-based stats.
Identities = 113/222 (50%), Positives = 148/222 (66%), Gaps = 2/222 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I ++ A+R K SV+LVAVSK D+ +IR L GQ +F EN++Q
Sbjct: 25 MSDIVANLNTVKAAIASAEKEARREKGSVTLVAVSKTFDADEIRPVLDAGQRVFGENRVQ 84
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ++
Sbjct: 85 EAQGKWPQLRGDYSGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALAAEIKKQNK 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 145 TPKLYVQVNTGLEEQKAGIAPKEAVAFVERCRKEHGLAIEGLMCIPPAGENPGPHFALLE 204
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 205 KLAREAGVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRSY 246
>gi|258620724|ref|ZP_05715759.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258586922|gb|EEW11636.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 236
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIALRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|291522267|emb|CBK80560.1| pyridoxal phosphate enzyme, YggS family [Coprococcus catus GD/7]
Length = 230
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++ ++ + A R +D V+L+AVSK I L+ G + + ENK+QE
Sbjct: 2 LTENVIEVEKHVQAACDRAGRSRDEVTLIAVSKTKPVSDIEEVLTTGILDYGENKVQELS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ +++ IG LQ NKV ++ +I +V + A + E K +PV
Sbjct: 62 DKYE--VLPKNIRWHMIGHLQRNKVKYLIGKVVLIHSVDSLRLAEQIEHEAAKADIVMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
I+VN E K G V + + + GLM I P NP+ + ++
Sbjct: 120 LIEVNVAEEESKFGTTSEAAMQLVEAVSKLPHIKIRGLMTIAPFTDNPEDNRIYFRKLKQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +LSMGMT D+E+AI GAT VR+G+GIFG+R Q
Sbjct: 180 LSVDIKSKNIDNVDMDELSMGMTGDYEVAIEEGATMVRVGTGIFGKRNYQ 229
>gi|226324964|ref|ZP_03800482.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
gi|225206312|gb|EEG88666.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
Length = 232
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + ++ + + R ++ V+L+AVSK + + A + G F ENK+QE
Sbjct: 2 ITENLKDVEARVCAACERSGRKREDVTLIAVSKTKPVEMLEEAYAYGCRYFGENKVQELD 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + K D+ + IG LQ NKV I+ ++I +V + A + E K+ + V
Sbjct: 62 EKYDIMPK--DIHWQMIGHLQRNKVKYIIDKAELIHSVDSIRLAETIDKEAAKKGIVVNV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G+MP + DF+ + + V+GLM I P + NP+ + + + +
Sbjct: 120 LLEVNMAKEDTKFGLMPEEVMDFIHEIVRFQHIKVQGLMTIAPFVENPEENRIHFANLRK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT DFE+AI GAT VRIG+ IFGER
Sbjct: 180 LSVDIAKEKVDNVNMSILSMGMTNDFEVAIEEGATMVRIGTAIFGERNY 228
>gi|118591433|ref|ZP_01548831.1| hypothetical protein SIAM614_27338 [Stappia aggregata IAM 12614]
gi|118436105|gb|EAV42748.1| hypothetical protein SIAM614_27338 [Stappia aggregata IAM 12614]
Length = 223
Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats.
Identities = 100/218 (45%), Positives = 128/218 (58%), Gaps = 1/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++L + I N+ R + SV+L+AVSK ++ +IR L GQ +F EN++QEA
Sbjct: 5 ADRLANVQADIRNAEAEFGRAQGSVTLIAVSKTFEADEIRPVLEAGQRVFGENRVQEAMH 64
Query: 64 KWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW ++L IG LQSNK E ++ FDV+ TV R K A L EM KQ R LP
Sbjct: 65 KWPGLREDFEGIELHLIGPLQSNKAKEAIATFDVVHTVDRPKIARALKAEMEKQGRDLPC 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+IQVNTG E QK+GI P FV CR+ LN+ GLMCIPP HF LL +IA
Sbjct: 125 FIQVNTGEEPQKAGIAPKDVDAFVKECREDVGLNIVGLMCIPPVNEASGEHFALLEKIAA 184
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L KLSMGM+ D+ +A+ GAT VR+GS IFG R
Sbjct: 185 RNGLEKLSMGMSSDYPVAVGFGATHVRVGSAIFGSRDY 222
>gi|163814074|ref|ZP_02205466.1| hypothetical protein COPEUT_00227 [Coprococcus eutactus ATCC 27759]
gi|158450523|gb|EDP27518.1| hypothetical protein COPEUT_00227 [Coprococcus eutactus ATCC 27759]
Length = 231
Score = 184 bits (466), Expect = 8e-45, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L + + +I+N+ + R + V+L+AVSK I L + F ENK+QE
Sbjct: 2 LKENYEEVRSRIDNACVRTGRNPEDVTLIAVSKTKPLSDIEEILRDTKAIDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ +V IG LQ+NKV IV +I +V A + E K + +
Sbjct: 62 VDKYE--NVSRNVNWHMIGHLQTNKVKYIVDKVCMIHSVDSLNLAKTIEKEAAKHNVTVN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VN E K G+ + + + + V+GLM I P + +P+ + ++
Sbjct: 120 ILIEVNVAQEESKFGLACEEVLPLINEIKDFPHIRVKGLMTIAPFVDDPEDNRVYFRKLR 179
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 DLSLDIQSKSIDNIDMSVLSMGMTNDYEVAVEEGATLVRVGTGIFGARNYN 230
>gi|120553473|ref|YP_957824.1| alanine racemase domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120323322|gb|ABM17637.1| alanine racemase domain protein [Marinobacter aquaeolei VT8]
Length = 237
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + ++I+ + + A R SV L+AVSK ++ ++ A GQ+ F EN LQEA
Sbjct: 3 SIADNIGSVTRRIQKATLQAGREPGSVRLLAVSKTRPAEDLKAAFEAGQIAFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK +I F + +V R K A LS + + L
Sbjct: 63 LDKMQALSDIEGIEWHFIGPIQSNKTRQIAEAFAWVHSVDRLKIARRLSEQRPETLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG ++ + + + L + GLM IP ++A
Sbjct: 123 ICLQVNINNEDSKSGCTLDELDELLEAIGELPNLRLRGLMAIPDPDQPEAELRLSFRKLA 182
Query: 182 REC-----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ D E+AIA GAT VR+G+ +FG RP +
Sbjct: 183 STLTKLRQDHPEAGPLDTLSMGMSDDLEMAIAEGATWVRVGTALFGARPAK 233
>gi|299139440|ref|ZP_07032615.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX8]
gi|298598709|gb|EFI54872.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX8]
Length = 229
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ + ++ ++ A R + V+L+AVSKM ++ I A + GQ +F EN++QE
Sbjct: 1 MSIASNIERLRNEVADACARANRRAEDVALMAVSKMHPAEAILEAHAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K + + + L IG LQ+NK ++ +F I+ V KTA L+ + L
Sbjct: 61 AQAKSAQIAQLEGLDLHLIGPLQNNKTAKAAEIFHAIDAVDSLKTAERLNSAAQALGKTL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P+ I+V +E K G+ P + F+ + L +GLM +PP +P +P+F L
Sbjct: 121 PLLIEVKLSHEETKHGLAPEELPAFLDGLQPFSFLKPQGLMTVPPWSDDPETARPYFQHL 180
Query: 178 SEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E LT+LSMGM+ DF +AI G+T+VRIG+ IFG+R
Sbjct: 181 RRLRDENVAQHPNLTQLSMGMSHDFRVAIEEGSTTVRIGTAIFGKRSY 228
>gi|194334464|ref|YP_002016324.1| alanine racemase domain-containing protein [Prosthecochloris
aestuarii DSM 271]
gi|194312282|gb|ACF46677.1| alanine racemase domain protein [Prosthecochloris aestuarii DSM
271]
Length = 229
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +++I S + A R + V L+AVSK + IR A GQ+ E+ +QE
Sbjct: 3 TISENLAAIQKEILTSCLKAGRSPEDVRLIAVSKTKPASLIREAYDAGQIDIGESYVQEF 62
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P + V+ FIG LQSNK+ IV ++ ++ + TA LS ++ +
Sbjct: 63 LEKTASPELEGLPVRWHFIGHLQSNKIKYIVDKVYMVHSIDKLSTARELSKRAAAKNLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
I+VNT E K G+ P + + + GLM I P F LL+
Sbjct: 123 DYLIEVNTSGEPSKFGLSPEELLKTAGSFFDLPSVTLRGLMTIASPDPSLAHEEFKLLAN 182
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +T+LSMGM+ DFE AI +GAT VRIG+ +FG R
Sbjct: 183 LLEQLRAKAPHPENITELSMGMSGDFEKAIDAGATMVRIGTALFGRR 229
>gi|160938829|ref|ZP_02086180.1| hypothetical protein CLOBOL_03723 [Clostridium bolteae ATCC
BAA-613]
gi|158437792|gb|EDP15552.1| hypothetical protein CLOBOL_03723 [Clostridium bolteae ATCC
BAA-613]
Length = 226
Score = 184 bits (466), Expect = 9e-45, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ ++ IE++ A R + V+L+AVSK + A G F ENK+QE
Sbjct: 2 IKKQLEEVRKHIEDACRRAGRNPEEVTLIAVSKTKPVPMLMEAYDAGARDFGENKVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D++ IG LQ NKV +++ +I +V + A + + K + +
Sbjct: 62 NKKPE--LPEDIRWHMIGHLQRNKVHQVIDKAVLIHSVDSLRLAQQIEDDAAKLGLDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G + + +D ++ + ++++GLM I P + NP+ + + ++
Sbjct: 120 LLEVNVAREESKYGFLMEEVEDAIMQIKDFPHVHIKGLMTIAPFVDNPEENRGIFKKLFE 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 FAVDIGGKNIDNVTMSVLSMGMTGDYEVAIEEGATMVRVGTGIFGSR 226
>gi|91781864|ref|YP_557070.1| hypothetical protein Bxe_A3981 [Burkholderia xenovorans LB400]
gi|91685818|gb|ABE29018.1| Protein of unknown function UPF0001 [Burkholderia xenovorans LB400]
Length = 232
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 109/229 (47%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S+ L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 ITKIEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V +QVN E KSG+ + +L + GLM IP + + L
Sbjct: 123 NVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLRGLMAIPEPAGSIDEQRVPHRQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|148265705|ref|YP_001232411.1| alanine racemase domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399205|gb|ABQ27838.1| alanine racemase domain protein [Geobacter uraniireducens Rf4]
Length = 237
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 82/229 (35%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I +A+ A R SV LVAVSK D+ + A GQ +F EN +QE
Sbjct: 1 MFIADNLKFIHERIAAAALKAGRDPASVLLVAVSKTRDASAVDDAARSGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + V FIG LQSNKV +I L ++I +V R A + + + +
Sbjct: 61 LVTKAAQVSES--VAWHFIGGLQSNKVRQIAGLVEMIHSVDRLSLAREIDRQWGRLGKTC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E K G V L ++GLM +PP +P+ E+
Sbjct: 119 NVLIQVNIACEASKCGANSADVLGLVRNVAALPHLRIKGLMTMPPFFDDPEGARPYFREL 178
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + ++T+LSMGM+ DFE+AIA GAT VR+GS IFGER
Sbjct: 179 KRLSELVAAERILKVEMTELSMGMSGDFEVAIAEGATLVRVGSAIFGER 227
>gi|259417396|ref|ZP_05741315.1| pyridoxal phosphate enzyme, YggS family [Silicibacter sp.
TrichCH4B]
gi|259346302|gb|EEW58116.1| pyridoxal phosphate enzyme, YggS family [Silicibacter sp.
TrichCH4B]
Length = 218
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 6/222 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL K +I + A R SV L+AVSK+ ++++ L G +F EN++QE
Sbjct: 1 MSLSE----IKSRIAAAETTAGRAPGSVELIAVSKVQPNERVEAVLEEGHRVFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++ DV L IG LQ+NK + + L + I +V R K A+ L+ +
Sbjct: 57 AAGKWPEFREKFSDVDLHLIGPLQTNKARQAMELVNAIHSVDRPKLATTLARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P + F+ CR L ++GLMCIPP P HF LL++
Sbjct: 117 PELFIQVNTGEEEQKAGILPKDSDGFIQECRA-LDLPIKGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
IA L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAERNGLSGLSMGMSGDFESAIALGATHVRVGSAIFGERAYS 217
>gi|330972631|gb|EGH72697.1| hypothetical protein PSYAR_19276 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 228
Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|197334451|ref|YP_002155186.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
gi|197315941|gb|ACH65388.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
Length = 236
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ + +IENS R DSV L+AVSK + + A+ GQ IF EN +QE
Sbjct: 3 SIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQCIFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + ++ FIG +QSNK I FD + +V R K A L+ + +
Sbjct: 63 IEKVQYFQKQHPTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNEQRPSELG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG + + + L + GLM IP + N
Sbjct: 123 ELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R +
Sbjct: 183 QLTSIQNQLRAQYPQVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYK 233
>gi|288933579|ref|YP_003437638.1| alanine racemase [Klebsiella variicola At-22]
gi|290511354|ref|ZP_06550723.1| YggS family pyridoxal phosphate enzyme [Klebsiella sp. 1_1_55]
gi|288888308|gb|ADC56626.1| alanine racemase domain protein [Klebsiella variicola At-22]
gi|289776347|gb|EFD84346.1| YggS family pyridoxal phosphate enzyme [Klebsiella sp. 1_1_55]
Length = 233
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 105/232 (45%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIVAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 61 EGVEKINHFQQAGISGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + L + GLM IP F +
Sbjct: 121 PPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 QQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|114319503|ref|YP_741186.1| hypothetical protein Mlg_0341 [Alkalilimnicola ehrlichii MLHE-1]
gi|114225897|gb|ABI55696.1| Protein of unknown function UPF0001 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 237
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 110/228 (48%), Gaps = 9/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +LQV +++ + R SV L+AVSK IR AL+ GQ F EN LQE
Sbjct: 1 MDIAQRLQVVHERLRAAEHRFGRDPGSVKLLAVSKTQPVSAIRAALAAGQHAFGENYLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K + + FIG+LQSNK ++ FD TV R K A LS + ++ L
Sbjct: 61 ALDKQQA-LADTPAEWHFIGALQSNKTRDVAGHFDWCHTVDRLKIARRLSQQRPEERPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLL 177
V IQVN E K+G++P + + +L + GLM +P + L
Sbjct: 120 NVCIQVNISGEASKAGVLPAGAAELAAQVAELPRLRLRGLMALPAPAEGLAAQRRPLAAL 179
Query: 178 SEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 180 RELQEHLVSSGLALDTLSMGMSGDLEAAVAEGATLVRIGTAIFGPRQT 227
>gi|304392701|ref|ZP_07374641.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
gi|303295331|gb|EFL89691.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
Length = 233
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 98/220 (44%), Positives = 138/220 (62%), Gaps = 1/220 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + ++ + +R + V+L+AVSK D+ I AL G +F EN++QE++
Sbjct: 13 MRKQIDQVLEAVDVACRKVERRGEDVTLIAVSKTFDADAICPALEAGHRVFGENRVQESQ 72
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + DV+L IG LQSNK ++ V LFDVI TV REK A L+ EM KQ +
Sbjct: 73 GKWPELRAEFSDVELHLIGPLQSNKSADAVELFDVIHTVDREKIAKALAGEMKKQGKTPK 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+++QVNTG E QK+GI P + FV CR ++ L +EGLMCIPPA NP PHF LL ++A
Sbjct: 133 LFVQVNTGEEPQKAGIAPKEAVAFVQRCRDEHGLEIEGLMCIPPADENPGPHFELLRKLA 192
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E + LSMGM+ D+++A+ GAT VR+GS IFG R
Sbjct: 193 DEADVNGLSMGMSGDYQVAVQFGATHVRVGSAIFGVRDYP 232
>gi|1730919|sp|P52055|YPI1_VIBAL RecName: Full=UPF0001 protein in pilT-proC intergenic region;
AltName: Full=ORF1
gi|801880|dbj|BAA09062.1| FkuA [Vibrio alginolyticus]
Length = 233
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQ 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|117919643|ref|YP_868835.1| hypothetical protein Shewana3_1194 [Shewanella sp. ANA-3]
gi|117611975|gb|ABK47429.1| Protein of unknown function UPF0001 [Shewanella sp. ANA-3]
Length = 238
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 111/228 (48%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A + GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIEALKATHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LS++
Sbjct: 123 KVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQTDELSKL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D ++A+ G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDY 230
>gi|295675574|ref|YP_003604098.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
gi|295435417|gb|ADG14587.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
Length = 240
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L ++I +A A R SV L+AVSK + +R A + GQ F EN +QEA
Sbjct: 13 AHNLADVHERIAKAAQAAGRDAQSVMLLAVSKTFPADAVRDAHAAGQRAFGENYVQEALD 72
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG LQSNK + FD + +V R K A LS + L V
Sbjct: 73 KIQTLADLRASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNV 132
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
+QVN E KSG+ P++ +L + GLM IP + L E
Sbjct: 133 CLQVNVSGEASKSGVAPDEAAAIAHQITALPKLKLRGLMSIPEPAGDLDAQRAPHRQLRE 192
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 193 LFERLRNDGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 239
>gi|308050653|ref|YP_003914219.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
gi|307632843|gb|ADN77145.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
Length = 227
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 114/227 (50%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L + +I+++A A R +S++L+AVSK ++ IR A G F EN LQ
Sbjct: 1 MSTITERLIEAQARIDSAAAQAGRVGESITLLAVSKTKPAEMIREAYLAGARDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L+ D++ FIG LQSNK + FD I +V R K A LS +
Sbjct: 61 EGVDKIDALQDL-DIRWHFIGPLQSNKTRPVAERFDWIHSVDRLKIAQRLSEQRPSGKAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---L 176
L V IQVN E KSG+ P Q + L + GLM IP +P+
Sbjct: 120 LNVCIQVNISAEQSKSGVNPAQLPELAAAVAALPGLRLRGLMAIPAPESDPEKQRQALAQ 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ K L LSMGM+ D E A+A G+T VRIG+ IFG R
Sbjct: 180 MKQLFDALKAEHPGLDTLSMGMSDDLEAAVAEGSTMVRIGTAIFGTR 226
>gi|187922723|ref|YP_001894365.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
gi|187713917|gb|ACD15141.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
Length = 232
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R SV L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIAMAAHVAGRDTRSVHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 LTKIEALADLRATLEWHFIGPLQSNKTRPVAEQFDWVHSVDRLKIAQRLSEQRPDNLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V +QVN E KSG+ + + +LN+ GLM IP + + L
Sbjct: 123 NVCLQVNISGEASKSGVSIPEAVEVAQAIAALPKLNLRGLMAIPEPAGGIDEQRVPHRHL 182
Query: 178 SEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ +L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLCNDGLELDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|237729881|ref|ZP_04560362.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908487|gb|EEH94405.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 234
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I+ A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIKEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ + D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 61 EGVDKIRYFQEKGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + ++ + GLM IP + F +
Sbjct: 121 PPLNVLIQINISDENSKSGISLAELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 181 QQMAVAFAGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 231
>gi|260222645|emb|CBA32411.1| UPF0001 protein PA0394 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 250
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L Q+I + + RP DSV L+AVSK ++ A GQ F EN +Q
Sbjct: 19 MTMIADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFGPDAVQQAFDAGQRAFGENYIQ 78
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ IG +QSNK + F ++TV R K A LS +
Sbjct: 79 EAVDKISALSAL-PIEWHCIGPIQSNKTRLVAEHFQWVQTVDRLKIAQRLSDQRPPHLPP 137
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS 178
L V IQVN KSG+ P + Q +L + G+MCIP PA +S
Sbjct: 138 LQVCIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIMCIPEPAPDFVAARAVFMS 197
Query: 179 E-------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A+ L LSMGM+ D + A+A G+T VR+GS IFG RP
Sbjct: 198 AKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARPTP 247
>gi|221128049|ref|XP_002155398.1| PREDICTED: similar to CG1983 CG1983-PA [Hydra magnipapillata]
Length = 232
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L Q+I + + RP DSV L+AVSK ++ A GQ F EN +Q
Sbjct: 1 MTMIADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFGPDAVQQAFDAGQRAFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ IG +QSNK + F ++TV R K A LS +
Sbjct: 61 EAVDKISALSAL-PIEWHCIGPIQSNKTRLVAEHFQWVQTVDRLKIAQRLSDQRPPHLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS 178
L V IQVN KSG+ P + Q +L + G+MCIP PA +S
Sbjct: 120 LQVCIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIMCIPEPAPDFVAARAVFMS 179
Query: 179 E-------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A+ L LSMGM+ D + A+A G+T VR+GS IFG RP
Sbjct: 180 AKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARPTP 229
>gi|183596314|ref|ZP_02958342.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
gi|188023918|gb|EDU61958.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
Length = 231
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 102/228 (44%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K +IE +A R ++L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MTIQRNISDVKARIERAAAECHRSAQDITLLAVSKTKPCDAILEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R+K A L+ + L
Sbjct: 61 GVEKIQFFADRQDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRQKIAQRLNDQRPSNKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q L GLM IP + + ++
Sbjct: 121 NVLIQINISDENSKSGIKLEEFDELAKQVSQMPNLVFRGLMTIPAPESDYQRQCEAFRKM 180
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EQAYQQLQTHYPSVDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGARDY 228
>gi|24374863|ref|NP_718906.1| hypothetical protein SO_3352 [Shewanella oneidensis MR-1]
gi|24349558|gb|AAN56350.1|AE015772_10 conserved hypothetical protein TIGR00044 [Shewanella oneidensis
MR-1]
Length = 237
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIHLLAVSKTKPIADIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIESLKTTHPDIEWHFIGPLQSNKTTLVAQHFDWMHTLSREKIALRLNEQRPANLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q QL + GLM IP A + + LSE+
Sbjct: 123 NVCIQINISDEDTKSGINAQQMLPLANSISQLPQLRLRGLMAIPSATDDTEQQTRELSEL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGM+ D +LAIA G+T VRIGS IFGER +
Sbjct: 183 KHLFDTLKQHYPDVDTLSMGMSNDLDLAIAYGSTMVRIGSAIFGERDYSS 232
>gi|229525152|ref|ZP_04414557.1| hypothetical protein VCA_002763 [Vibrio cholerae bv. albensis
VL426]
gi|229338733|gb|EEO03750.1| hypothetical protein VCA_002763 [Vibrio cholerae bv. albensis
VL426]
Length = 236
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ IE++ R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAHIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|193213296|ref|YP_001999249.1| alanine racemase domain-containing protein [Chlorobaculum parvum
NCIB 8327]
gi|193086773|gb|ACF12049.1| alanine racemase domain protein [Chlorobaculum parvum NCIB 8327]
Length = 229
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 14/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I + A R D V+L+AVSK + +R A GQ F E+ +QE
Sbjct: 3 SISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQEF 62
Query: 62 KKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P V FIG LQSNKV +IV ++ + + TA LS ++ +
Sbjct: 63 LEKCEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGLNV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++VN E K G+ P+ C + + GLM I +P SE+
Sbjct: 123 DFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLRGLMTIASP--DPDTARREFSEL 180
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++LSMGM+ DFE AI GAT +RIG+ IFG R
Sbjct: 181 RETLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR 229
>gi|126175227|ref|YP_001051376.1| alanine racemase domain-containing protein [Shewanella baltica
OS155]
gi|125998432|gb|ABN62507.1| alanine racemase domain protein [Shewanella baltica OS155]
Length = 232
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ FIG LQSNK + + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKITALKEDFPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQ+N E KSGI Q L Q L + GLM IP F +L
Sbjct: 123 NVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNY 230
>gi|261346263|ref|ZP_05973907.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
DSM 4541]
gi|282565572|gb|EFB71107.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
DSM 4541]
Length = 230
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 100/228 (43%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N + +I +A R ++L+AVSK + I A+ G F EN +QE
Sbjct: 1 MTIQNNIAEVTARINLAATECHRSPQEITLLAVSKTKPCEAILEAIDAGLRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFADRTDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNEQRPQNKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q L + GLM IP + + ++
Sbjct: 121 NVLIQINISDENSKSGIKLEDVDALAAQVAQLPNLVLRGLMTIPAPETDYERQCAAFRQM 180
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EQAFQQLKNNYPTVDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGARQY 228
>gi|268593080|ref|ZP_06127301.1| pyridoxal phosphate enzyme, YggS family [Providencia rettgeri DSM
1131]
gi|291311349|gb|EFE51802.1| pyridoxal phosphate enzyme, YggS family [Providencia rettgeri DSM
1131]
Length = 230
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N + +IE++A +R ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MTIQNNISDVTARIEHAAAECQRSPQDITLLAVSKTKPCEAISEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFSHRNDLIWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNDQRPSEKSPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V IQ+N E KSGI + + L + GLM IP F+ +
Sbjct: 121 NVLIQINISDENSKSGITLAEVTELAAQVATMPNLVLRGLMTIPAPETDYERQCAVFHQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+E + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 NEAFEQLKTTYPTVDTLSMGMTDDMRAAIHCGSTLVRIGTAIFGARQY 228
>gi|262403913|ref|ZP_06080470.1| hypothetical protein VOA_001901 [Vibrio sp. RC586]
gi|262349875|gb|EEY99011.1| hypothetical protein VOA_001901 [Vibrio sp. RC586]
Length = 236
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + +V L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSAVQLLAVSKTKPIEAILEATQAGQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIALRLNEQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQKLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|154504399|ref|ZP_02041137.1| hypothetical protein RUMGNA_01903 [Ruminococcus gnavus ATCC 29149]
gi|153795328|gb|EDN77748.1| hypothetical protein RUMGNA_01903 [Ruminococcus gnavus ATCC 29149]
Length = 230
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I+ + A R ++ V+L+AVSK I G ++ ENK+QE
Sbjct: 2 LKEQLKEVERRIQAACDRAGRKREEVTLIAVSKTKPVSMIEETYQLGIHVYGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D++ IG LQ+NKV IV +I +V K A + E K++ +
Sbjct: 62 EKYE--ILPKDIEWHMIGHLQTNKVKYIVGKTALIHSVDSLKLAETIEKEAAKKNCIQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G+ ++ F+ Q + V+GLM I P + NP + + + + +
Sbjct: 120 LVEVNVAQEESKFGLKVDEVIPFIEKISQFQHICVKGLMTIAPFVENPDDNRPVFANLHK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+E+AI GAT VR+G+GIFG R Q
Sbjct: 180 LSVDIMNKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGARNYQ 229
>gi|90580285|ref|ZP_01236092.1| Predicted enzyme with a TIM-barrel fold protein [Vibrio angustum
S14]
gi|90438587|gb|EAS63771.1| Predicted enzyme with a TIM-barrel fold protein [Vibrio angustum
S14]
Length = 236
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 103/230 (44%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +I + R DSV L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKQNIAEVINQITLATEKCGRAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + FIG +QSNK + FD + ++ R KTA LS +
Sbjct: 63 VDKVNHFSSHPEKNLLVWHFIGPIQSNKTRLVAEHFDWVHSIDRIKTAKRLSDQRPTSMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN+ E KSGI + + + GLM IP + F
Sbjct: 123 PLQVLLQVNSSAEATKSGITLAEVPALAAEIAAMPNIELRGLMSIPQPATDYDSQFATFK 182
Query: 179 EIA---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A + KL LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 ALAVTLEQLKLTYPNVDTLSMGMSGDMEAAIAAGSTIVRIGTAIFGARDY 232
>gi|298370551|ref|ZP_06981866.1| pyridoxal phosphate enzyme, YggS family [Neisseria sp. oral taxon
014 str. F0314]
gi|298281161|gb|EFI22651.1| pyridoxal phosphate enzyme, YggS family [Neisseria sp. oral taxon
014 str. F0314]
Length = 231
Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 99/230 (43%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +I + A R V LVAV K + IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYHNVLAQIAGAEASAGRSAGEVRLVAVGKTFPAGDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWYEKTEDLADLSDIVWHIIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSAQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---L 176
L V I+VN E K G+ P++ + L + GLMC+ A
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPDEAVALACEVAKLPNLKMRGLMCVAKADAGEAELREAFGR 180
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E LSMGM+ D ++A+A GAT VRIGS IFG R
Sbjct: 181 MRALLAELNAAGVAADVLSMGMSGDMKIAVACGATHVRIGSAIFGRRDYS 230
>gi|66043744|ref|YP_233585.1| hypothetical protein Psyr_0477 [Pseudomonas syringae pv. syringae
B728a]
gi|63254451|gb|AAY35547.1| Protein of unknown function UPF0001 [Pseudomonas syringae pv.
syringae B728a]
Length = 228
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLMAIPEPTDDPAAQDASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|212709355|ref|ZP_03317483.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
30120]
gi|212688267|gb|EEB47795.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
30120]
Length = 230
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 103/228 (45%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L ++I +A R ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MTIQKNLSDVTERIRLAATECHRSPQDITLLAVSKTKPCEAIMEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFSERNDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNEQRPQDKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q L + GLM IP + + ++
Sbjct: 121 NVLIQINISDENSKSGITLEEVNELAAQVAQLPNLVLRGLMTIPAPETDYERQCAAFRQM 180
Query: 181 ---ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EFAFEQLKASYSTVDTLSMGMTDDMRAAIHCGSTLVRIGTAIFGARQY 228
>gi|262191072|ref|ZP_06049279.1| hypothetical protein VIH_001443 [Vibrio cholerae CT 5369-93]
gi|262033048|gb|EEY51579.1| hypothetical protein VIH_001443 [Vibrio cholerae CT 5369-93]
Length = 236
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A GQ+ F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQLYFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYSQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|304396759|ref|ZP_07378639.1| alanine racemase domain protein [Pantoea sp. aB]
gi|304355555|gb|EFM19922.1| alanine racemase domain protein [Pantoea sp. aB]
Length = 235
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 112/227 (49%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQQNLQQVRQRIAAAAAQCGRAPEEITLLAVSKTKPASAVEEAFAAGQIGFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L +++ FIG LQSNK + F T+ R++ A LS + L
Sbjct: 63 VEKVQALAAHPELEWHFIGPLQSNKSRLVAENFAWCHTIDRQRIAQRLSDQRPASLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V IQVN E KSGIM QL + GLM IP A + + ++
Sbjct: 123 VLIQVNISDENSKSGIMLEAVSGLAEQIAALPQLRLRGLMAIPAAESDYQRQLAVCQQMA 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E R+ + + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 EAFRQLQQQYSDIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 229
>gi|260432321|ref|ZP_05786292.1| pyridoxal phosphate enzyme, YggS family [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416149|gb|EEX09408.1| pyridoxal phosphate enzyme, YggS family [Silicibacter
lacuscaerulensis ITI-1157]
Length = 219
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 94/219 (42%), Positives = 124/219 (56%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ K +I + A R SV+L+AVSK+ + ++ L G F EN++QE
Sbjct: 1 MS----LQDIKDRIAKAEAAAGRSPGSVTLIAVSKVQPNDRVEAVLEQGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+ + + L IG LQ+NK + + L + I +V R K A L+ +
Sbjct: 57 AAAKWPAFRERFPGIDLHLIGPLQTNKARQAMELCNAIHSVDRPKLAKTLARLAQEIGTC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G++P F+ CR L V GLMCIPP P HF LL++
Sbjct: 117 PDLFIQVNTGEEPQKAGVLPADADVFIAECRD-LDLPVRGLMCIPPVHEEPALHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAARNGLQGLSMGMSGDFETAIALGATHVRVGSAIFGER 214
>gi|323493580|ref|ZP_08098701.1| hypothetical protein VIBR0546_04999 [Vibrio brasiliensis LMG 20546]
gi|323312103|gb|EGA65246.1| hypothetical protein VIBR0546_04999 [Vibrio brasiliensis LMG 20546]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/233 (30%), Positives = 107/233 (45%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE + R + SV L+AVSK + I A GQ F EN +Q
Sbjct: 3 SIQQNIEQITSQIEVAQQKCGRGRGSVQLLAVSKTKPIEAILEAAQAGQTAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ E +++ FIG +QSNK + F + TV R K A L+ + +
Sbjct: 63 ANKVIHFAQHHPELNLEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPQGLE 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V IQVNT E KSGI + L L + GLM IP + + + +
Sbjct: 123 PIQVLIQVNTSGESSKSGIDNEEIFAIAELISSLPNLTLRGLMSIPANVSDYQSQLAAFT 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A+ E + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLAQLKDKLAQQFPEQNIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 235
>gi|99079889|ref|YP_612043.1| hypothetical protein TM1040_0048 [Ruegeria sp. TM1040]
gi|99036169|gb|ABF62781.1| Protein of unknown function UPF0001 [Ruegeria sp. TM1040]
Length = 218
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 6/222 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL K +I + A R SV L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MSLSE----IKSRIAAAESAAGRVPGSVELIAVSKVQPNERVEAVLEEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++ V L IG LQ+NK + + L +VI +V R K A+ L+ +
Sbjct: 57 AAGKWPQFREKFTGVDLHLIGPLQTNKARQAMELVNVIHSVDRPKLANALARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P FV CR+ L ++GLMCIPP P HF LL++
Sbjct: 117 PDLFIQVNTGEEEQKAGILPQDADGFVAECRK-LDLPIKGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 176 MAERNGLNGLSMGMSGDFESAIALGATHVRVGSAIFGARAYS 217
>gi|269960444|ref|ZP_06174817.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834871|gb|EEZ88957.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 236
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I + R +SV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKCGRSPESVQLLAVSKTKPVEAILEAYQGGQLAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + TV R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTVDRAKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSG+ + + L + L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEESKSGVSDAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + ++ + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLEALKQKLAQQYPDVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 233
>gi|238918246|ref|YP_002931760.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella ictaluri
93-146]
gi|238867814|gb|ACR67525.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella ictaluri
93-146]
Length = 236
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
++ + L +Q I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 TIKHNLDAVRQHIARAAEQCGRHPRDITLLAVSKTKPIEDIDAAIAAGQRAFGENYVQEG 63
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG LQSNK + FD I TV R K A L+ + Q +
Sbjct: 64 VSKIQHYRQQPQGDALEWHFIGPLQSNKSRPVAEHFDWIHTVDRVKIAQRLNEQRPAQLK 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q +L + GLM IP +P + +
Sbjct: 124 PLNVLIQVNISDEQSKSGITLEQIDALADAISQLPRLRLRGLMAIPAPEDDPARQLAVCT 183
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A+ +L LS+GMT D E AI +G+T VRIG+ IFG R T
Sbjct: 184 RMAQALSALQRRYPQLDTLSLGMTHDMEAAITAGSTLVRIGTAIFGARDYGT 235
>gi|254719796|ref|ZP_05181607.1| hypothetical protein Bru83_09663 [Brucella sp. 83/13]
gi|265984815|ref|ZP_06097550.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306839492|ref|ZP_07472300.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264663407|gb|EEZ33668.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306405437|gb|EFM61708.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 226
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 116/223 (52%), Positives = 150/223 (67%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRKNGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYS 223
>gi|269965745|ref|ZP_06179842.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269829613|gb|EEZ83850.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 233
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLREFQ 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|323498672|ref|ZP_08103663.1| TIM-barrel fold family protein [Vibrio sinaloensis DSM 21326]
gi|323316272|gb|EGA69292.1| TIM-barrel fold family protein [Vibrio sinaloensis DSM 21326]
Length = 238
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I ++ RP+DSV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEQITSQIASAQQKCGRPRDSVQLLAVSKTKPNGAILEAAQAGQLAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ E +++ FIG +QSNK + F + TV R K A L+ + S
Sbjct: 63 AEKVAYFTQHHPELELEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPAGSP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V +QVNT E KSG+ ++ L L + GLM IP + +
Sbjct: 123 PIQVLMQVNTSGEASKSGLNQDEIFALAELISSLPNLTLRGLMSIPANVSDYDSQLAAFK 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A +L LSMGM+ D E AI +G+T VRIG+ IFG R
Sbjct: 183 QLAELQQTLINRYPNQQLDTLSMGMSGDMEAAIEAGSTMVRIGTAIFGARDYS 235
>gi|91228687|ref|ZP_01262601.1| FkuA [Vibrio alginolyticus 12G01]
gi|91187758|gb|EAS74076.1| FkuA [Vibrio alginolyticus 12G01]
Length = 233
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFSEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLREFQ 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|222054661|ref|YP_002537023.1| alanine racemase domain protein [Geobacter sp. FRC-32]
gi|221563950|gb|ACM19922.1| alanine racemase domain protein [Geobacter sp. FRC-32]
Length = 230
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +++IE +A+ A R SV LV VSKM + A GQ +F EN +QE
Sbjct: 1 MSIADNLGQIEKRIEKAAVKAGREPASVRLVVVSKMQQPSAVDDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + ++ V FIGSLQSNKV +I L ++I +V R A + + K R
Sbjct: 61 LVSKVSQVGEQ--VTWHFIGSLQSNKVRQIAGLVEMIHSVDRLSLAREIDRQWQKLGRIC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVN E KSG + + V + ++GLM +PP +P+ E+
Sbjct: 119 NVLVQVNVAGEATKSGSSAGELLELVRNISLLPNVRIKGLMTMPPFFDDPEGARPYFREL 178
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ +LSMGM+ DFE+AI GAT VR+GS IFGER
Sbjct: 179 RDLSRMIADEPIANVEMNELSMGMSGDFEVAIEEGATLVRVGSAIFGERQAS 230
>gi|158421901|ref|YP_001523193.1| hypothetical protein AZC_0277 [Azorhizobium caulinodans ORS 571]
gi|158328790|dbj|BAF86275.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 106/215 (49%), Positives = 142/215 (66%), Gaps = 1/215 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + IE + A R +++V+L+AVSK + +I ++ GQ +F EN++QE++ KW
Sbjct: 21 RLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPVIAAGQRVFGENRVQESQAKW 80
Query: 66 IP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
++ ++L IG LQSNK ++ V+LFDVI TV R K A L+ EM +Q R LPV+I
Sbjct: 81 PELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPKIAYALAEEMSRQGRRLPVFI 140
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI+P F+ CR K L+V GLMCIPPA P PHF LL+EIAR
Sbjct: 141 QVNTGAEPQKAGILPEAADAFIAECRDKAGLDVRGLMCIPPAEDVPAPHFALLAEIARHN 200
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L LSMGM+ DFE+AI GAT VR+GS +FG RP
Sbjct: 201 DLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRP 235
>gi|108806321|ref|YP_650237.1| hypothetical protein YPA_0324 [Yersinia pestis Antiqua]
gi|108813298|ref|YP_649065.1| hypothetical protein YPN_3138 [Yersinia pestis Nepal516]
gi|145597881|ref|YP_001161957.1| hypothetical protein YPDSF_0574 [Yersinia pestis Pestoides F]
gi|149367050|ref|ZP_01889083.1| hypothetical protein YPE_2328 [Yersinia pestis CA88-4125]
gi|167468160|ref|ZP_02332864.1| hypothetical protein YpesF_09734 [Yersinia pestis FV-1]
gi|170023081|ref|YP_001719586.1| alanine racemase domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|218928113|ref|YP_002345988.1| hypothetical protein YPO0941 [Yersinia pestis CO92]
gi|229837634|ref|ZP_04457796.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229840860|ref|ZP_04461019.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842579|ref|ZP_04462734.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229903761|ref|ZP_04518874.1| predicted enzyme [Yersinia pestis Nepal516]
gi|108776946|gb|ABG19465.1| hypothetical protein YPN_3138 [Yersinia pestis Nepal516]
gi|108778234|gb|ABG12292.1| hypothetical protein YPA_0324 [Yersinia pestis Antiqua]
gi|115346724|emb|CAL19607.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209577|gb|ABP38984.1| hypothetical protein YPDSF_0574 [Yersinia pestis Pestoides F]
gi|149290664|gb|EDM40740.1| hypothetical protein YPE_2328 [Yersinia pestis CA88-4125]
gi|169749615|gb|ACA67133.1| alanine racemase domain protein [Yersinia pseudotuberculosis YPIII]
gi|229679531|gb|EEO75634.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229690889|gb|EEO82943.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229697226|gb|EEO87273.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704322|gb|EEO91333.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|320013977|gb|ADV97548.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 232
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN 230
>gi|304410071|ref|ZP_07391690.1| alanine racemase domain protein [Shewanella baltica OS183]
gi|307302217|ref|ZP_07581975.1| alanine racemase domain protein [Shewanella baltica BA175]
gi|304351480|gb|EFM15879.1| alanine racemase domain protein [Shewanella baltica OS183]
gi|306914255|gb|EFN44676.1| alanine racemase domain protein [Shewanella baltica BA175]
Length = 239
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKITALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAEFAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQ+N E KSGI Q L Q L + GLM IP F +L
Sbjct: 130 NVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNY 237
>gi|146279161|ref|YP_001169320.1| alanine racemase domain-containing protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145557402|gb|ABP72015.1| alanine racemase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 220
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 88/215 (40%), Positives = 117/215 (54%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +I + A R SV L+AVSK+ ++ L G IF EN +QEA+ KW
Sbjct: 2 LETILNRIAEAEKAAGRAPGSVELIAVSKVQPLDRVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR + + IG LQ+NK V LFD I T+ R A L+ ++ +++Q
Sbjct: 62 ELRARFGRLSIHMIGPLQTNKAKAAVGLFDAIHTLDRPSLADKLARLAQERGASPELFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ + L V GLMCIPP + PHF L+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFI-ATCRSMDLPVRGLMCIPPEGEDSAPHFAQLAAIADRNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LGGLSMGMSGDFEAAIAAGATHVRVGSAIFGARDY 215
>gi|239996730|ref|ZP_04717254.1| alanine racemase domain protein [Alteromonas macleodii ATCC 27126]
Length = 228
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 8/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ I+ +A A RP +SV L+AVSK I A GQ +F EN +QE
Sbjct: 3 TIAERLDSARKGIDQAATSAHRPPNSVKLLAVSKTKPVSDIMEAYDAGQRMFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D++ IG +QSNK + FD +++V REK A L+ + L
Sbjct: 63 VEKVQELSHLSDIEWHMIGPIQSNKTKVVAEHFDWVQSVDREKIARRLNEQRPDSMPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E KSG+ ++ V + L + GLM IP P+ + L
Sbjct: 123 VCIQVNIDDEESKSGVALSELDALVEFINSQKHLTLRGLMAIPKADPSEEQQRATLSKLK 182
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ LS+GM+ D AI G+T VRIG+ IFG+R
Sbjct: 183 ELFDHYHTSLSNFDTLSVGMSSDMTEAIQHGSTMVRIGTAIFGKRN 228
>gi|114705826|ref|ZP_01438729.1| hypothetical protein FP2506_15209 [Fulvimarina pelagi HTCC2506]
gi|114538672|gb|EAU41793.1| hypothetical protein FP2506_15209 [Fulvimarina pelagi HTCC2506]
Length = 224
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 107/222 (48%), Positives = 143/222 (64%), Gaps = 1/222 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ K I + A R DSV+LVA+SK KI L G +F ENK+QE
Sbjct: 1 MAVADQYHAVKNAIAKAMADAGRKPDSVALVAISKTHGEDKILPLLEAGHRVFGENKVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW + D++LR +G LQSNK + V+LFDVIE+V REK A ++ E+ KQ R
Sbjct: 61 SQAKWPTLRERFPDIELRLVGPLQSNKTGDAVALFDVIESVDREKIARAIAKEVEKQGRN 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI+P + FV CR ++ L +EGLMCIPP NP PHF LL++
Sbjct: 121 PRLYVQVNTGEEEQKAGILPKEAVAFVERCRSEHGLTIEGLMCIPPVDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A E + KLSMGM+ D+E AI GATSVR+GS IFGER
Sbjct: 181 LAGEAGVEKLSMGMSGDYETAIQFGATSVRVGSAIFGERDYS 222
>gi|306841587|ref|ZP_07474284.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288333|gb|EFM59696.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 226
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 116/223 (52%), Positives = 150/223 (67%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYS 223
>gi|254560698|ref|YP_003067793.1| alanine racemase [Methylobacterium extorquens DM4]
gi|254267976|emb|CAX23844.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens DM4]
Length = 246
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 99/218 (45%), Positives = 128/218 (58%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 25 DVAAGLAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALEAGQRIFGENYVQES 84
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 85 KAKWPGLRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 144
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 145 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARI 204
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 205 AERHGLPILSMGMSADFPAAIQMGATHVRVGTAIFGRR 242
>gi|325579003|ref|ZP_08148959.1| YggS family pyridoxal phosphate enzyme [Haemophilus parainfluenzae
ATCC 33392]
gi|325159238|gb|EGC71372.1| YggS family pyridoxal phosphate enzyme [Haemophilus parainfluenzae
ATCC 33392]
Length = 234
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ QKI+++ LA RP+ +V+L+AVSK ++ I A GQ F EN +QE
Sbjct: 1 MTIKQALETIHQKIQDATQLAHRPESAVTLLAVSKTKPNEAILEAYHAGQKAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + ++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVDKIQYFEAQNIQLEWHFIGPLQSNKTRLVAEHFDWMQTLERAKIADRLNEQRPANKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---L 176
L V IQ+N E KSGI PN+ + L + GLM IP N
Sbjct: 121 LNVLIQINISDEASKSGIQPNEMIELAKHIENLPHLRLRGLMAIPAPTDNIAEQEAAFSQ 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + K + LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 181 MEQLFEQLKVAFPHQQIDTLSMGMTDDMQTAIKCGSTMVRIGTAIFGARDYS 232
>gi|299533817|ref|ZP_07047188.1| hypothetical protein CTS44_23491 [Comamonas testosteroni S44]
gi|298718233|gb|EFI59219.1| hypothetical protein CTS44_23491 [Comamonas testosteroni S44]
Length = 274
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 106/227 (46%), Gaps = 11/227 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + A R SV L+ VSK +R+A + G + ENK+QEA KW
Sbjct: 29 NLATVQERIAAACQRAGRDPASVRLLPVSKTKPQASLRLAYAAGCRLLGENKVQEAFGKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D++ IG LQ+NK + + + + A L + Q R L V++Q
Sbjct: 89 ESMQDLADLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALDRHLQGQGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P F+ L V GLM + + F LL E+
Sbjct: 149 VNTSGEASKYGLNPEDVPGFIQQLPVFSALRVRGLMTLALFSAEAERVRRCFILLRELRD 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 QLQQSAPAGMELDALSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 255
>gi|168242903|ref|ZP_02667835.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194449587|ref|YP_002047088.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194407891|gb|ACF68110.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205338194|gb|EDZ24958.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 234
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K D+ FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEDLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|296161767|ref|ZP_06844569.1| alanine racemase domain protein [Burkholderia sp. Ch1-1]
gi|295887931|gb|EFG67747.1| alanine racemase domain protein [Burkholderia sp. Ch1-1]
Length = 232
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 109/229 (47%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S+ L+AVSK ++ +R A GQ F EN +QEA
Sbjct: 3 DLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYGAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 ITKIEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V +QVN E KSG+ + +LN+ GLM IP + + L
Sbjct: 123 NVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLNLRGLMAIPEPAGSIDEQRVPHRQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|51597523|ref|YP_071714.1| hypothetical protein YPTB3213 [Yersinia pseudotuberculosis IP
32953]
gi|186896646|ref|YP_001873758.1| alanine racemase domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590805|emb|CAH22451.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186699672|gb|ACC90301.1| alanine racemase domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 232
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN 230
>gi|332981918|ref|YP_004463359.1| alanine racemase domain-containing protein [Mahella australiensis
50-1 BON]
gi|332699596|gb|AEE96537.1| alanine racemase domain protein [Mahella australiensis 50-1 BON]
Length = 233
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + K++I+ +A + R D + L+AV+K VD ++I+ A++ G EN++QE
Sbjct: 5 IASNIDRVKERIKKAAERSGRSVDDIVLIAVTKTVDVERIKAAVNYGIKDLGENRVQELT 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ DV+ IG LQ+NKV I+ +I +V K + +R + +
Sbjct: 65 AKYP--YISDDVRWHMIGRLQTNKVKYIIDRVSLIHSVDSLKLLKEIDKRSEIANRMMDI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ DFV + ++GLM + P +P +P+F + E
Sbjct: 123 LIEVNVAGEASKGGVAVEDVIDFVKQSAVFENIRIKGLMTVAPQTDDPEIVRPYFAQMKE 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ ++ LSMGM+ DFE+AI G+ VRIG+ IFGERP T
Sbjct: 183 LSFKIEKLKLDNVEMKYLSMGMSGDFEVAIEEGSNMVRIGTAIFGERPINT 233
>gi|218710629|ref|YP_002418250.1| hypothetical protein VS_2683 [Vibrio splendidus LGP32]
gi|218323648|emb|CAV19942.1| Hypothetical protein VS_2683 [Vibrio splendidus LGP32]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +I ++ R DSV L+AVSK I A GQV F EN +Q
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K + +++ FIG +QSNK I F + +V R+K A L + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A + + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDY 232
>gi|86146413|ref|ZP_01064737.1| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222]
gi|85835892|gb|EAQ54026.1| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222]
Length = 238
Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +I ++ R DSV L+AVSK I A GQV F EN +Q
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K + +++ FIG +QSNK I F + +V R+K A L + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A + + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLADLQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDY 232
>gi|291279388|ref|YP_003496223.1| hypothetical protein DEFDS_0997 [Deferribacter desulfuricans SSM1]
gi|290754090|dbj|BAI80467.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 228
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L++ ++IE +AI + R KD + LVAVSK ++KI A +CGQ +F EN++QEA
Sbjct: 2 ICKNLEIIMERIEKAAIKSGRAKDDIVLVAVSKTFPAEKIVEAYNCGQRVFGENRVQEAL 61
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK K D++ IG LQ+NKV + + F +I +V R + A L++ K
Sbjct: 62 KKIEGLRDKFEDIEFHMIGHLQTNKVRYLKNNFSLIHSVDRIELAELINKYAKKNGLTQD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E QKSG++ V L ++GLM IPP + + + + +++
Sbjct: 122 ILIQVNIAEEPQKSGVLLKDYDRLVEFVLNCDNLKLKGLMMIPPLVDDAEVNRPFFAKMN 181
Query: 182 R---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ DFE+AI GA VRIGS IFG+R
Sbjct: 182 ELFLKTNDRYNIQMDYLSMGMSDDFEIAIEEGANMVRIGSAIFGKR 227
>gi|160876289|ref|YP_001555605.1| alanine racemase domain-containing protein [Shewanella baltica
OS195]
gi|160861811|gb|ABX50345.1| alanine racemase domain protein [Shewanella baltica OS195]
Length = 232
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP F +L
Sbjct: 123 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNY 230
>gi|291546182|emb|CBL19290.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus sp. SR1/5]
Length = 230
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++ I S R + V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 VAENLAQVQKNINESCNKINRDPNEVTLIAVSKTKPVEMLKEAYDAGARVFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + DV+ IG LQ NKV IV +I +V + A + E K++ +P+
Sbjct: 62 DKYDQMPS--DVKWHMIGHLQRNKVKYIVDKVAMIHSVDSLRLAETIEKEAAKKAVIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ P + + + ++GLM I P + N + + + E+ +
Sbjct: 120 LIEVNVAQEESKFGLKPEEVLPLIEQIADFSHIRIKGLMTIAPYVDNAEENREIFRELKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+ +A+ GAT VR+G+GIFG R
Sbjct: 180 LSVDIAAKNINNVTMSVLSMGMTGDYMVAVQEGATMVRVGTGIFGARNY 228
>gi|227326779|ref|ZP_03830803.1| putative alanine racemase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 270
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 105/227 (46%), Gaps = 11/227 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A + G I ENK+QEA +KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPESRLRMAHTAGCRILGENKVQEAYRKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLHVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P F+ L V GLM + + F L +
Sbjct: 149 VNTSGEASKYGLSPEDVPAFIQALPAFPTLRVRGLMTLALFSSEAERVRQCFIRLRNLRD 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 KLQQNAPVGIGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 255
>gi|197121761|ref|YP_002133712.1| alanine racemase domain protein [Anaeromyxobacter sp. K]
gi|196171610|gb|ACG72583.1| alanine racemase domain protein [Anaeromyxobacter sp. K]
Length = 223
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 76/220 (34%), Positives = 111/220 (50%), Gaps = 10/220 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L + + V+LVAVSK + IR A + GQ F EN QE
Sbjct: 1 MSIADRLAAIRADL----------PAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L ++ FIG LQ+NK + ++ V RE+ A+ LS ++
Sbjct: 51 WRAKADALADLPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN G E K G P++ + R + + GLMCIPP +P+PHF L +
Sbjct: 111 RVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPDDDPRPHFRALRAL 170
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D+ +A+ GAT VR+GS IFG RP
Sbjct: 171 RDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARPP 210
>gi|311278132|ref|YP_003940363.1| alanine racemase domain-containing protein [Enterobacter cloacae
SCF1]
gi|308747327|gb|ADO47079.1| alanine racemase domain protein [Enterobacter cloacae SCF1]
Length = 239
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + A++ GQ F EN +Q
Sbjct: 6 MNDIAHNLAQVRDKISAAAAQCGRAPEEVTLLAVSKTKPVSAVEEAIAAGQRAFGENYVQ 65
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + +Q FIG LQSNK + FD TV R + AS LS +
Sbjct: 66 EGVEKIRHFQQAGATGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSEQRPADM 125
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQVN E KSGI P + L + GLM IP F +
Sbjct: 126 APLNVLIQVNISDEDSKSGIPPEAVDELAAEVAALPGLVLRGLMAIPAPESEYVRQFAVA 185
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 186 QRMAVAFGRLKAQYATVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 236
>gi|77918018|ref|YP_355833.1| PLP dependent enzymes class III-like protein [Pelobacter
carbinolicus DSM 2380]
gi|77544101|gb|ABA87663.1| PLP dependent enzymes class III-like protein [Pelobacter
carbinolicus DSM 2380]
Length = 228
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ LQ ++++ + R + V LVAVSK + I A + GQ +F EN +QE
Sbjct: 1 MSIQTNLQTIRERMNAACRRVNRNPEDVQLVAVSKTKPADMIEAAAAAGQSLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + V FIGSLQSNKV + +I +V R A + + K
Sbjct: 61 FLTKTEDVTVP--VVWHFIGSLQSNKVKYLCGKVAMIHSVDRLSLAKEIDRQWGKSGETA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ IQVN G E KSG +D V + + GLM +PP + +P +P F L
Sbjct: 119 QILIQVNLGQEESKSGTEEAALEDLVRKVAALPHIRICGLMALPPYLDDPEQVRPFFRRL 178
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A ++ +LSMGM+ DF++AI GAT VR+GS IFG R
Sbjct: 179 RQLADMLAALNIPGVEMRELSMGMSHDFDVAIEEGATLVRVGSAIFGSR 227
>gi|77461540|ref|YP_351047.1| hypothetical protein Pfl01_5319 [Pseudomonas fluorescens Pf0-1]
gi|77385543|gb|ABA77056.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 228
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 105/227 (46%), Gaps = 7/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + +I + A R ++SV L+AVSK S+ +R A + G F EN LQ
Sbjct: 1 MSTIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQLELADL-PLIWHFIGPIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP + +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGLMAIPEPTEDRAEQDAAFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VQKLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYS 226
>gi|254421067|ref|ZP_05034791.1| conserved hypothetical protein TIGR00044 [Brevundimonas sp. BAL3]
gi|196187244|gb|EDX82220.1| conserved hypothetical protein TIGR00044 [Brevundimonas sp. BAL3]
Length = 232
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 94/218 (43%), Positives = 131/218 (60%), Gaps = 1/218 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +I+ + A R +V+L AVSK + I L+ GQ +F EN++QEA+
Sbjct: 13 IAERVAGVRARIDAACHAAGRDPAAVTLTAVSKTQPDEAIDAILATGQRVFGENRVQEAQ 72
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+W D +LR IG LQ+NK + V LFDVIET+ REK A L+ K+ R
Sbjct: 73 ARWTERLSGLDGLELRLIGPLQTNKAEDAVVLFDVIETLDREKLARALAEAAQKRGRSPR 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVNTG E QK+G++P + R+ Y L VEGLMCIPPA +PHF LL ++A
Sbjct: 133 VLVQVNTGAEPQKAGVLPEAAAALIDTARRTYGLTVEGLMCIPPADQAAEPHFALLRDMA 192
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+ LSMGM+ D+E AI GAT VR+G+ +FGER
Sbjct: 193 ERNGLSVLSMGMSGDYETAIRCGATHVRVGTALFGERN 230
>gi|153947334|ref|YP_001399814.1| hypothetical protein YpsIP31758_0830 [Yersinia pseudotuberculosis
IP 31758]
gi|152958829|gb|ABS46290.1| conserved hypothetical protein TIGR00044 [Yersinia
pseudotuberculosis IP 31758]
Length = 232
Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 ILIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN 230
>gi|323524799|ref|YP_004226952.1| alanine racemase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323381801|gb|ADX53892.1| alanine racemase domain protein [Burkholderia sp. CCGE1001]
Length = 232
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 111/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIAMAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 LTKIEALADLRASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDALPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V +QVN E KSG+ ++ +L + GLM IP + + L
Sbjct: 123 NVCLQVNISGEASKSGVSVDEAMQVARDIAALPRLRLRGLMAIPEPAGGIDEQRVPHRRL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRSDGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|160892651|ref|ZP_02073441.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
gi|156865692|gb|EDO59123.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
Length = 231
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L ++ QKI + A R + V+L+AVSK I L + F ENK+QE
Sbjct: 2 LKENYELVDQKITEACKRAGRDRKDVTLIAVSKTKPLSDIEELLAETDAIDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + ++ + IG LQ+NKV IV +I +V A + E K +
Sbjct: 62 VDKYETVSRKVN--WHMIGHLQTNKVKYIVDKVCLIHSVDSVNLAKTIEKEAAKHDVIVK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V I+VN E K G+ +T+D ++ + + +EGLM I P + +P+ + +
Sbjct: 120 VLIEVNVAGEESKFGVSVEETEDLIMQIKDFPHIQIEGLMTIAPFVDDPEDNRVHFRRLR 179
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 ELLLDINSKNIDNVHMNVLSMGMTNDYEVAVEEGATMVRVGTGIFGARNYN 230
>gi|84394065|ref|ZP_00992801.1| Predicted enzyme with a TIM-barrel fold [Vibrio splendidus 12B01]
gi|84375307|gb|EAP92218.1| Predicted enzyme with a TIM-barrel fold [Vibrio splendidus 12B01]
Length = 238
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 106/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +I ++ R +SV L+AVSK I A GQV F EN +Q
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPESVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K + +++ FIG +QSNK I F + +V R+K A LS + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVERDKIAQRLSDQRPSELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSGEESKSGTSEETVFALAELISLLPNLTLRGLMSIPANVSDYQSQLNAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A + + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAAKYPNIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDY 232
>gi|163749435|ref|ZP_02156683.1| hypothetical protein KT99_04189 [Shewanella benthica KT99]
gi|161330844|gb|EDQ01771.1| hypothetical protein KT99_04189 [Shewanella benthica KT99]
Length = 242
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 84/229 (36%), Positives = 116/229 (50%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +IE +A ++ R D + L+AVSK + I A + GQ F EN +QE
Sbjct: 14 TIADRLANAQHRIEQAAQISSRNADEIQLLAVSKTKPNADILAAYAAGQRRFGENYVQEG 73
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K +++ FIG LQSNK I S FD + TVSREK AS L+ + K L
Sbjct: 74 ESKVNALKDSCPEIEWHFIGPLQSNKTKIIASHFDWMHTVSREKIASRLNDQRPKDLCPL 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
+ IQ+N E KSG P + K Q L + GLM IP + F L
Sbjct: 134 NICIQINISSETSKSGTTPEELKSLASKIDQMPNLTLRGLMAIPTATSDKELQRDEFQQL 193
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E K + LSMGM+ D E AI G+T VRIGS IFG R +
Sbjct: 194 QALYQELKSLYPQVDTLSMGMSNDLEQAIEQGSTMVRIGSAIFGAREKR 242
>gi|323669740|emb|CBJ94864.1| conserved hypothetical protein [Salmonella bongori]
Length = 237
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP + F +
Sbjct: 121 PPLNVLIQINISDENSKSGIPLTELDELAVAVAALPRLKLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFGGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|119385486|ref|YP_916542.1| alanine racemase domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119375253|gb|ABL70846.1| alanine racemase domain protein [Paracoccus denitrificans PD1222]
Length = 217
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +++I + + R V+L+AVSK+ ++ L GQ +F EN +QEA KW
Sbjct: 3 LDEIRRRISAAETASGRAAGEVTLIAVSKVQPPDRVEAVLDAGQRVFGENYVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + ++L IG LQ+NK+ + LFD I T+ R A+ L+ ++ + +++Q
Sbjct: 63 GWRERFAGIELHMIGPLQTNKLKPALELFDAIHTLDRPSLATKLARQVQVRGACPQLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P++ F+ CR L + GLMCIPP +P PHF L +IA
Sbjct: 123 VNTGAEPQKAGILPDEADAFIAQCRA-LDLAISGLMCIPPEDRDPVPHFRDLRDIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA GAT VRIGS IFG R +
Sbjct: 182 LAGLSMGMSADFETAIAEGATHVRIGSAIFGARDYR 217
>gi|242238227|ref|YP_002986408.1| alanine racemase domain protein [Dickeya dadantii Ech703]
gi|242130284|gb|ACS84586.1| alanine racemase domain protein [Dickeya dadantii Ech703]
Length = 241
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +QKI +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 5 TVPQNLQDVRQKISAAAERCGRAPEEITLLAVSKTKPVTAIEDAIAAGQRAFGENYVQEG 64
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + R+ + FIG LQSNK + FD T+ R + A LS +
Sbjct: 65 VEKILYFRQTHQDIALEWHFIGPLQSNKSRPVAEHFDWCHTIDRLRIAQRLSEQRPDTLP 124
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +Q+N E KSGI+P++ L + GLM IP + + F
Sbjct: 125 PLNVLLQINISREESKSGILPDELPALAASVAALPNLRLRGLMAIPAPEADHQRQLAVFR 184
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ ++ + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 185 RMYDLFQQLQADHAHVDTLSMGMTDDMAAAIEAGSTLVRIGTAIFGARDY 234
>gi|322834238|ref|YP_004214265.1| alanine racemase domain protein [Rahnella sp. Y9602]
gi|321169439|gb|ADW75138.1| alanine racemase domain protein [Rahnella sp. Y9602]
Length = 239
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 101/228 (44%), Gaps = 9/228 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ ++KI +A R + ++L+AVSK + + A++ GQ+ F EN +QE
Sbjct: 9 IEQNLQNVREKIAAAAQHCGRSPEEITLLAVSKTKPASAVEEAIAAGQLAFGENYVQEGV 68
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K FIG LQSNK + FD T+ R K A L+ + L
Sbjct: 69 DKIAHFAGHQPALTWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAQRLNEQRPAGLAPLQ 128
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGI + +L + GLM IP + + ++
Sbjct: 129 VLIQVNISDEASKSGIAVGDIAELARQIMAMPRLILRGLMAIPAVETDHARQLEVFGKMR 188
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 189 DALKDLQNICPQADTLSMGMTDDMPAAIAAGSTMVRIGTAIFGARDYS 236
>gi|170739698|ref|YP_001768353.1| alanine racemase domain-containing protein [Methylobacterium sp.
4-46]
gi|168193972|gb|ACA15919.1| alanine racemase domain protein [Methylobacterium sp. 4-46]
Length = 227
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 98/214 (45%), Positives = 128/214 (59%), Gaps = 1/214 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP- 67
+ +I +A +R ++V+LVAVSK V ++ I AL GQ +F EN +QEA+ KW
Sbjct: 13 TVRAEIARAARDHERDPNAVALVAVSKTVPAEGIVPALEAGQRLFGENYVQEARAKWPAL 72
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ DV+L IG LQSNK E V LFDVI ++ R A+ LS E+ + R + +QVN
Sbjct: 73 RARYPDVELHMIGPLQSNKAREAVELFDVIHSLDRSSLAASLSREIARTGRRPRLLVQVN 132
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK G+ P F+ CR + L +EGLMCIPPA P HF LL+ IA L
Sbjct: 133 TGDEPQKGGVSPAAADAFLAECRDAHGLTIEGLMCIPPAEDPPSAHFALLARIAARHGLA 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LSMGM+ D+ AI GAT VR+GS IFG RP +
Sbjct: 193 VLSMGMSADYPAAIQMGATHVRVGSAIFGARPAK 226
>gi|217972518|ref|YP_002357269.1| alanine racemase domain-containing protein [Shewanella baltica
OS223]
gi|217497653|gb|ACK45846.1| alanine racemase domain protein [Shewanella baltica OS223]
Length = 239
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKITALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNEQRPAELAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP F +L
Sbjct: 130 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNY 237
>gi|194337101|ref|YP_002018895.1| alanine racemase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309578|gb|ACF44278.1| alanine racemase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 229
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++I + I A R V L+AVSK + I+ A G ++F E+ +QE
Sbjct: 3 SIAANIETIREQIHAACIEAGRDPAGVRLIAVSKTHPASLIKEAFDAGHIVFGESYVQEF 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ FIG LQSNK+ I+ +I + + TA LS ++ + +
Sbjct: 63 LEKCEDPLLAQLGIEWHFIGHLQSNKIRSIIGKVSLIHGIDKLSTAEELSKRALRNNLQV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P + + + GLM I P + F LL
Sbjct: 123 DYLLEVNTSGEASKYGMSPEELLSLAESLFTLPNITLRGLMTIASPDRVLAQQEFRLLRT 182
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLT+LSMGM+ DF AI GAT +R+G+ IFG R
Sbjct: 183 LLDALKPISPDPSKLTELSMGMSGDFREAIHEGATMIRVGTAIFGWR 229
>gi|170750500|ref|YP_001756760.1| alanine racemase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170657022|gb|ACB26077.1| alanine racemase domain protein [Methylobacterium radiotolerans JCM
2831]
Length = 250
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 1/221 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A ++R + LVAVSK V ++ I AL G +F EN +QE+
Sbjct: 29 DVAAGLAEVRAAIARAAEDSERDPAEIQLVAVSKTVPAEGILPALKAGHRVFGENYVQES 88
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + DV+L +G LQSNK E V+LFDVI ++ R A+ L+ E+ + R
Sbjct: 89 VAKWPGLRARFPDVELHLVGPLQSNKAREAVALFDVIHSLDRLSLAAALAKEIERSGRTP 148
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK G++P+Q + CR+ + L ++GLMCIPPA P HF LL+ +
Sbjct: 149 KLLIQVNTGAEPQKGGVLPDQLATLLSECRETHGLAIQGLMCIPPAEDPPSAHFALLARL 208
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A+ L LSMGM+ DF AI GAT VR+G+ IFG R +
Sbjct: 209 AKAHNLPILSMGMSADFPAAIQLGATHVRVGTAIFGARTRK 249
>gi|218529832|ref|YP_002420648.1| alanine racemase domain protein [Methylobacterium chloromethanicum
CM4]
gi|218522135|gb|ACK82720.1| alanine racemase domain protein [Methylobacterium chloromethanicum
CM4]
Length = 247
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 99/221 (44%), Positives = 129/221 (58%), Gaps = 1/221 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 26 DVAAGLAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALESGQRIFGENYVQES 85
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 86 KAKWPALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 145
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 146 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARI 205
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L LSMGM+ DF AI GAT VR+G+ IFG R +
Sbjct: 206 AERHGLPILSMGMSADFPAAIQMGATHVRVGTAIFGRRTKR 246
>gi|108761718|ref|YP_630860.1| hypothetical protein MXAN_2641 [Myxococcus xanthus DK 1622]
gi|108465598|gb|ABF90783.1| conserved hypothetical protein TIGR00044 [Myxococcus xanthus DK
1622]
Length = 227
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 83/224 (37%), Positives = 115/224 (51%), Gaps = 4/224 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L ++++ + A RP +SV+LVAVSK+ + IR A + GQ F EN QE
Sbjct: 4 SVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYAQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L ++ IG+LQ+NKV + + R + A LS LP
Sbjct: 64 RDKAAELADLEGLRWHSIGALQTNKVKYVARAAGAFHALDRLEVARELSKRREGAP-PLP 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLS 178
VY++VN G E KSG+ P+ F+ R L GLM +PP + F L
Sbjct: 123 VYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVGLMALPPPTEDEARARADFQALR 182
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+AR L LSMG T DFE AI GAT VR+G+ IFGER ++
Sbjct: 183 ELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKS 226
>gi|313903980|ref|ZP_07837360.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
gi|313471129|gb|EFR66451.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
Length = 230
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 101/230 (43%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L I ++ A R V+L+AVSK I G F EN +QE +
Sbjct: 2 LTENYDKVLGNIRSACERAGRDASEVTLIAVSKTKPESDIMELYDHGVRDFGENYIQELR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D++ IG LQ NKV I +I V + A + E K R +PV
Sbjct: 62 EKHE--HLPSDIRWHMIGHLQRNKVKYIAEYVTMIHAVDTLELAKTIEKEAAKHDRVIPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
I+VN E K G+ P +TK+FV ++V GLM P + N + + + ++
Sbjct: 120 LIEVNVAGEESKFGVAPEETKEFVKAVSVLPHVHVSGLMTSAPFVKNAEENRSVFEKLHE 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 180 LSVDINRENIDNVTMRVLSMGMTNDYNVAVEEGATLVRVGTAIFGARDYS 229
>gi|16761875|ref|NP_457492.1| hypothetical protein STY3253 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143362|ref|NP_806704.1| hypothetical protein t3012 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415038|ref|YP_152113.1| hypothetical protein SPA2963 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161506348|ref|YP_001573460.1| hypothetical protein SARI_04545 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|168234349|ref|ZP_02659407.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469044|ref|ZP_03075028.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197247706|ref|YP_002148014.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197363967|ref|YP_002143604.1| hypothetical protein SSPA2762 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|213051780|ref|ZP_03344658.1| hypothetical protein Salmoneentericaenterica_01903 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213648206|ref|ZP_03378259.1| hypothetical protein SentesTy_13494 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289825940|ref|ZP_06545099.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25304591|pir||AD0878 conserved hypothetical protein STY3253 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504177|emb|CAD02924.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138996|gb|AAO70564.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129295|gb|AAV78801.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|160867695|gb|ABX24318.1| hypothetical protein SARI_04545 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|194455408|gb|EDX44247.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197095444|emb|CAR61003.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211409|gb|ACH48806.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205331691|gb|EDZ18455.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 234
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|315268478|gb|ADT95331.1| alanine racemase domain protein [Shewanella baltica OS678]
Length = 239
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP F +L
Sbjct: 130 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNY 237
>gi|322613497|gb|EFY10438.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621089|gb|EFY17947.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624153|gb|EFY20987.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628108|gb|EFY24897.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633227|gb|EFY29969.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322636195|gb|EFY32903.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639533|gb|EFY36221.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322647534|gb|EFY44023.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648718|gb|EFY45165.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322653773|gb|EFY50099.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657879|gb|EFY54147.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663982|gb|EFY60181.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669007|gb|EFY65158.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322672999|gb|EFY69106.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678010|gb|EFY74073.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681186|gb|EFY77219.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687884|gb|EFY83851.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323194920|gb|EFZ80107.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199624|gb|EFZ84714.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323202629|gb|EFZ87669.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323207884|gb|EFZ92830.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212564|gb|EFZ97381.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323214953|gb|EFZ99701.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222683|gb|EGA07048.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225426|gb|EGA09658.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230559|gb|EGA14677.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235090|gb|EGA19176.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323239129|gb|EGA23179.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244513|gb|EGA28519.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323247128|gb|EGA31094.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253389|gb|EGA37218.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256304|gb|EGA40040.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262520|gb|EGA46076.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323267384|gb|EGA50868.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269212|gb|EGA52667.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 234
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAKLDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|204928220|ref|ZP_03219420.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204322542|gb|EDZ07739.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 234
Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATMPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|291550389|emb|CBL26651.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus torques
L2-14]
Length = 230
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ + KI+ + A R ++ V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 LETQLKEVEAKIQAACDRAGRKREEVTLIAVSKTKPIEMLQEAYDLGVRVFGENKVQEIT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ+NKV I+ D+I +V K A + E K + +
Sbjct: 62 AKYDA--LPDDIHWHMIGHLQTNKVKYIIDKVDLIHSVDSVKLAETIEKEAAKHNLTANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + F+ + V GLM I P + NP+ + + + + +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLPFIEKIANFEHIKVCGLMTIAPFVDNPEENRQIFANLHK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDINEKNIDNVYVNILSMGMTNDYEVAIEEGATMVRVGTGIFGARNYN 229
>gi|261365682|ref|ZP_05978565.1| pyridoxal phosphate enzyme, YggS family [Neisseria mucosa ATCC
25996]
gi|288565770|gb|EFC87330.1| pyridoxal phosphate enzyme, YggS family [Neisseria mucosa ATCC
25996]
Length = 231
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 105/230 (45%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L K++I + A V L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYAEVKRRIAEAEQKAGWQVGEVGLIAVSKTFPSDDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWYEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--- 176
L V I+VN E K G+ P++ + + + V GLMC+ A + +
Sbjct: 121 LQVCIEVNIAGEEAKHGVAPDEAVALGVEVAKLPNVVVRGLMCVAKAGSSEAELRHQFQA 180
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + LSMGM+ D +A+A GAT VRIGS IFG R +
Sbjct: 181 MQQLLADLNAAGVDADVLSMGMSDDMPVAVACGATHVRIGSAIFGRREQK 230
>gi|89074107|ref|ZP_01160606.1| Predicted enzyme with a TIM-barrel fold [Photobacterium sp. SKA34]
gi|89050043|gb|EAR55569.1| Predicted enzyme with a TIM-barrel fold [Photobacterium sp. SKA34]
Length = 236
Score = 181 bits (460), Expect = 4e-44, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 100/230 (43%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +I R DSV L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKQNIAKVINQITLVTEKCGRAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + FIG +QSNK + FD + ++ R KTA L+ +
Sbjct: 63 VDKVNHFSGHPENNLLVWHFIGPIQSNKTRLVAEHFDWVHSIDRIKTAKRLNDQRPTSMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN+ E KSGI + + + GLM IP + F
Sbjct: 123 PLQVLLQVNSSAEATKSGITLAEVPALAAEIAAMPNIELRGLMSIPQPATDYDSQFATFK 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 ALADTLEQLKLTYPNVDTLSMGMSGDMEAAIAAGSTIVRIGTAIFGARDY 232
>gi|213850160|ref|ZP_03381058.1| hypothetical protein SentesT_00608 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 237
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|330886255|gb|EGH20156.1| hypothetical protein PSYMO_01090 [Pseudomonas syringae pv. mori
str. 301020]
Length = 228
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPASDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSDEASKSGCSPQDLPALAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|300723967|ref|YP_003713281.1| hypothetical protein XNC1_3109 [Xenorhabdus nematophila ATCC 19061]
gi|297630498|emb|CBJ91163.1| putative enzyme with PLP-binding domain [Xenorhabdus nematophila
ATCC 19061]
Length = 231
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 NIEQNLHDVRNRIALVAQKCGRIPEEITLLAVSKTKPVDDIAKAIASGQREFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 63 VEKIQHFDNHDDLVWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAERLNEQRPENMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGI+ + D L + GLM IP + + + ++
Sbjct: 123 VLIQINISGEESKSGILLEELIDLAAKINSLPNLVLRGLMAIPAPENDFERQLAVFHQME 182
Query: 182 R---ECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + K + LSMGMT D E AI G+T VRIG+ IFG R ++
Sbjct: 183 QAFIKLKRLYSPVDTLSMGMTDDMEAAITCGSTLVRIGTAIFGARQYRS 231
>gi|149376943|ref|ZP_01894697.1| hypothetical protein MDG893_14515 [Marinobacter algicola DG893]
gi|149358720|gb|EDM47190.1| hypothetical protein MDG893_14515 [Marinobacter algicola DG893]
Length = 230
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + ++I+ + + A R SV L+AVSK + ++R A S GQ F EN +QEA
Sbjct: 3 SIADNIGSVTRRIQKATLKAGRSAGSVYLLAVSKTRPADELRTAYSAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L++ ++ FIG +QSNK +I F +V R K A L+ + L
Sbjct: 63 LDKMEELKELDAIEWHFIGPIQSNKTRQIAEAFAWAHSVDRLKIAQRLNDQRPPTLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG + D + L++ GLM IP ++A
Sbjct: 123 ICLQVNINNEESKSGCALEELIDMADAIEEMPNLSLRGLMAIPDPDQPEAELRSSFRKLA 182
Query: 182 RECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K L LSMGM+ D E+AI GAT VR+G+ +FG R
Sbjct: 183 NALKHMRQEASGCGPLDTLSMGMSGDLEMAIEEGATWVRVGTALFGPR 230
>gi|114767095|ref|ZP_01445978.1| alanine racemase domain protein [Pelagibaca bermudensis HTCC2601]
gi|114540748|gb|EAU43814.1| alanine racemase domain protein [Roseovarius sp. HTCC2601]
Length = 217
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 88/215 (40%), Positives = 123/215 (57%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L ++++ + A RP+ SV L+AVSK+ +++ L G +F ENK+QEA+ KW
Sbjct: 3 LTDIRERVAKAEAKAGRPEGSVELIAVSKVQPIERVEAVLEQGHRLFGENKVQEAQGKWP 62
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ V + IG LQ+NK + + LF I V R K A+ L+ + +++Q
Sbjct: 63 ALKERFEGVAVHLIGPLQTNKARQAMELFSAIHAVDRPKLANTLARLAQEMGHCPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P F+ R L ++GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEPQKAGILPADADAFIKEVRG-LDLPLKGLMCIPPVEETPSLHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AI+ GAT VR+GS IFGER
Sbjct: 182 LEGLSMGMSSDFEQAISLGATHVRVGSAIFGERDY 216
>gi|119775610|ref|YP_928350.1| hypothetical protein Sama_2477 [Shewanella amazonensis SB2B]
gi|119768110|gb|ABM00681.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 235
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 12/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +Q+I +A ++ R + L+AVSK + I+ A GQ +F EN +QE
Sbjct: 3 TIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K +++ FIG LQSNK + FD + T+ REK A L+ + + L
Sbjct: 63 VQKITDLTSPCPNIEWHFIGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V IQVN E KSG+ P + +L + GLM IP + +
Sbjct: 123 NVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLRGLMAIPAPTDDKERAQTELANM 182
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + + LSMGM+ D ELAI +G+T VR+GS IFGER
Sbjct: 183 QRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYS 234
>gi|327412910|emb|CAX67924.1| conserved hypothetical protein [Salmonella bongori]
Length = 234
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PPLNVLIQINISDENSKSGIPLAELDELAAAVAILPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|192361248|ref|YP_001980612.1| hypothetical protein CJA_0088 [Cellvibrio japonicus Ueda107]
gi|190687413|gb|ACE85091.1| conserved hypothetical protein TIGR00044 [Cellvibrio japonicus
Ueda107]
Length = 268
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL ++I +AILA R +V L+AVSK I A + GQ F EN LQEA
Sbjct: 44 IDDKLAKVTERIHQAAILAGRDPQTVQLIAVSKTQPPAAIAEAYAWGQRRFGENYLQEAL 103
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+Q FIG +QSNK I + F + +V R + A L+ + + L +
Sbjct: 104 DKQQALHALDDLQWHFIGPIQSNKTRLIAAHFAWVHSVDRLRIAQRLNDQRPEGLPPLEI 163
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN E KSG+ + + + +L + GLM IP A + + S +
Sbjct: 164 CIQVNIDDEDTKSGVNLAELPALALAIQPLKRLRLRGLMAIPVATSDTQQQRASFSRLRL 223
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VR+G+ IFG R
Sbjct: 224 AVAALNRQGLALDTLSMGMSGDLEAAIAEGATFVRVGTDIFGAR 267
>gi|170719558|ref|YP_001747246.1| alanine racemase domain-containing protein [Pseudomonas putida
W619]
gi|169757561|gb|ACA70877.1| alanine racemase domain protein [Pseudomonas putida W619]
Length = 228
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 103/226 (45%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L +I+++A A R S+ L+AVSK + IR + G EN LQ
Sbjct: 1 MSTIADNLCALAARIDSAAKAAGRDPASLHLLAVSKTKPASAIRELHAAGVCDVGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K LR + FIG +QSNK I FD + +V R K A LS + K
Sbjct: 61 EALAKQDDLRDL-PLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPKDLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEESKSGCAPEDLPALANAVAVLPNLRLRGLMAIPEPSEDRAEQEAAFAS 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRQLQEGLNLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARSY 225
>gi|238917083|ref|YP_002930600.1| hypothetical protein EUBELI_01153 [Eubacterium eligens ATCC 27750]
gi|238872443|gb|ACR72153.1| Hypothetical protein EUBELI_01153 [Eubacterium eligens ATCC 27750]
Length = 230
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++ I+ + + R + V LVAVSK + + CG F EN +QE
Sbjct: 2 LKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEMV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ IG LQ NKV +V +I +V E+ A +S + +K+ +
Sbjct: 62 DKTD--TLPKDITWHMIGHLQRNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
I+VN E K G+ ++ ++FV + + G M P + NP+ + E+
Sbjct: 120 LIEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTSAPFVENPEDNRKYFRELKQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 180 LLVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYS 229
>gi|258625609|ref|ZP_05720491.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258582111|gb|EEW06978.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 236
Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE++ R + SV L+AVSK + I A Q F EN +Q
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAEQRCFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIAVRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|126731006|ref|ZP_01746814.1| alanine racemase domain protein [Sagittula stellata E-37]
gi|126708308|gb|EBA07366.1| alanine racemase domain protein [Sagittula stellata E-37]
Length = 217
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++E + A R V L+AVSK+ +++ L G +F EN++QEA KW
Sbjct: 3 LNDIRTRVETACKAANRDPAEVKLIAVSKVQPLERVEAVLEEGHRLFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + V + IG LQSNK + + LFD I +V R K A+ ++ + + ++IQ
Sbjct: 63 DFRERFEGVDVHLIGPLQSNKARQAMDLFDAIHSVDRPKLANAIARLAQEMGQCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + F+ CR L V GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVLPKEADAFIAECRG-LDLPVAGLMCIPPVEETPSLHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LTGLSMGMSADFEEAIALGATHVRVGSAIFGER 214
>gi|315293935|gb|EFU53287.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 153-1]
Length = 234
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIHHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T RIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMGRIGTAIFGARDYS 232
>gi|261379176|ref|ZP_05983749.1| pyridoxal phosphate enzyme, YggS family [Neisseria cinerea ATCC
14685]
gi|269144362|gb|EEZ70780.1| pyridoxal phosphate enzyme, YggS family [Neisseria cinerea ATCC
14685]
Length = 228
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + ++I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQQRYREVSERIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + I+VN E K G+ P + + + + V GLMC+ A G+
Sbjct: 121 LQMCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKAGGSEAELKAQFQT 180
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|254230227|ref|ZP_04923619.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262393230|ref|YP_003285084.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
gi|151937259|gb|EDN56125.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262336824|gb|ACY50619.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
Length = 233
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKFGRTPESVQLLAVSKTKPVEAILEAHQAGQTAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQ 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|264676326|ref|YP_003276232.1| hypothetical protein CtCNB1_0190 [Comamonas testosteroni CNB-2]
gi|262206838|gb|ACY30936.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 275
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 11/227 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + R SV L+ VSK +R+A + G + ENK+QEA KW
Sbjct: 30 NLATVQERIAAACQRVGRDPASVRLLPVSKTKPQASLRLAYAAGCRLLGENKVQEAFGKW 89
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D++ IG LQ+NK + + + + A L + Q R L V++Q
Sbjct: 90 ESMQDLADLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALDRHLQAQGRSLDVFVQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P DF+ L V GLM + + F LL E+
Sbjct: 150 VNTSGEASKYGLSPEAVPDFIQQLPVFSALRVRGLMTLALFSAETERVRRCFILLRELRD 209
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 210 RLQQSAPAGIELDALSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 256
>gi|22127203|ref|NP_670626.1| hypothetical protein y3327 [Yersinia pestis KIM 10]
gi|45443239|ref|NP_994778.1| hypothetical protein YP_3501 [Yersinia pestis biovar Microtus str.
91001]
gi|162421828|ref|YP_001604768.1| hypothetical protein YpAngola_A0138 [Yersinia pestis Angola]
gi|165924910|ref|ZP_02220742.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937218|ref|ZP_02225782.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010377|ref|ZP_02231275.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212690|ref|ZP_02238725.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399806|ref|ZP_02305324.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421909|ref|ZP_02313662.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426713|ref|ZP_02318466.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270487539|ref|ZP_06204613.1| pyridoxal phosphate enzyme, YggS family [Yersinia pestis KIM D27]
gi|21960269|gb|AAM86877.1|AE013933_14 hypothetical protein y3327 [Yersinia pestis KIM 10]
gi|45438107|gb|AAS63655.1| Predicted enzyme with a TIM-barrel fold [Yersinia pestis biovar
Microtus str. 91001]
gi|162354643|gb|ABX88591.1| conserved hypothetical protein TIGR00044 [Yersinia pestis Angola]
gi|165914692|gb|EDR33305.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923110|gb|EDR40261.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990863|gb|EDR43164.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205982|gb|EDR50462.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960046|gb|EDR56067.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050514|gb|EDR61922.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054316|gb|EDR64135.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270336043|gb|EFA46820.1| pyridoxal phosphate enzyme, YggS family [Yersinia pestis KIM D27]
Length = 242
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 13 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 73 VDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 133 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 192
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 193 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN 240
>gi|302189818|ref|ZP_07266491.1| hypothetical protein Psyrps6_25881 [Pseudomonas syringae pv.
syringae 642]
Length = 228
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIMALPRLRLRGLMAIPEPTDDSAAQNASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQQQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|309378575|emb|CBX22847.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 234
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|148980488|ref|ZP_01816085.1| Predicted enzyme with a TIM-barrel fold protein [Vibrionales
bacterium SWAT-3]
gi|145961213|gb|EDK26527.1| Predicted enzyme with a TIM-barrel fold protein [Vibrionales
bacterium SWAT-3]
Length = 234
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +I ++ R +SV L+AVSK I A GQV F EN +Q
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPESVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K + +++ FIG +QSNK I F + +V R+K A L+ + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLNDQRPSELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSGEASKSGTSEESVFALAELISSLPNLTLRGLMSIPANVSDYQSQLNAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A + + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDY 232
>gi|296104615|ref|YP_003614761.1| alanine racemase family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059074|gb|ADF63812.1| alanine racemase family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 233
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 NIAHNLAQVRDKISAAATRCGRASEEITLLAVSKTKPASAIAEAIDAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDV--QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K +++ + Q FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRYFQEQGNTGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEMPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI ++ +L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALSELDALAAEVAALPRLTLRGLMAIPAPESSYERQFAVAQQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR K+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYEKIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|90421008|ref|ZP_01228912.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90334786|gb|EAS48562.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 224
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 116/223 (52%), Positives = 146/223 (65%), Gaps = 3/223 (1%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L +L+ +Q + ++ A R D+V+LVAVSK D+ I L GQ IF ENK+
Sbjct: 1 MNEALLERLETVRQAVAQASREAGRADDAVALVAVSKTHDADTILPVLEAGQRIFGENKV 60
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEAK KW + +V+LR IG LQSNK E V+LFDVIE+V REK A L+ EM KQ
Sbjct: 61 QEAKAKWPALRERFPEVELRLIGPLQSNKAGEAVALFDVIESVDREKIAKELAEEMAKQD 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R +Y+QVNTG E QK+GI P + FV CR ++ L +EGLMCIPPA P PHF LL
Sbjct: 121 RHPRLYVQVNTGEEDQKAGIAPREAVAFVERCRSEHGLRIEGLMCIPPAEEKPGPHFALL 180
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+IA E + KLSMGM+ D+E+AI GATSVR+GS IFG R
Sbjct: 181 EKIAAEAGVEKLSMGMSGDYEIAIGFGATSVRVGSAIFGARNY 223
>gi|330815598|ref|YP_004359303.1| Alanine racemase domain protein [Burkholderia gladioli BSR3]
gi|327367991|gb|AEA59347.1| Alanine racemase domain protein [Burkholderia gladioli BSR3]
Length = 236
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 109/232 (46%), Gaps = 10/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L L ++I+++A A R V L+AVSK ++ +R A + GQ F EN +Q
Sbjct: 1 MSDLAASLASVHRRIDDAARSAGRAPGEVVLLAVSKTFPAEAVREAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K L + FIG LQSNK + FD + +V R K A L+ +
Sbjct: 61 EALDKIAALADLRASLDWHFIGPLQSNKTRVVAEQFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V +QVN E KSG+ P + L + GLM IP G +
Sbjct: 121 PLNVCVQVNVSGEDSKSGVAPAEAAALAREVAALPTLRLRGLMAIPEPAGELAAQRVPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LL E+ K L LSMGM+ D E A+ GAT VR+G+ IFG R T
Sbjct: 181 LLRELFDTLKAEGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYGT 232
>gi|167552008|ref|ZP_02345761.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205323350|gb|EDZ11189.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 234
Score = 181 bits (459), Expect = 6e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQKAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|16766401|ref|NP_462016.1| hypothetical protein STM3100 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62181610|ref|YP_218027.1| hypothetical protein SC3040 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616064|ref|YP_001590029.1| hypothetical protein SPAB_03865 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167990373|ref|ZP_02571473.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168236168|ref|ZP_02661226.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168264454|ref|ZP_02686427.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463713|ref|ZP_02697630.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819870|ref|ZP_02831870.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445431|ref|YP_002042359.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194734660|ref|YP_002116048.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197262943|ref|ZP_03163017.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198244385|ref|YP_002217075.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200386504|ref|ZP_03213116.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205354023|ref|YP_002227824.1| hypothetical protein SG2994 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|224584893|ref|YP_002638692.1| hypothetical protein SPC_3165 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238909898|ref|ZP_04653735.1| hypothetical protein SentesTe_02020 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16421653|gb|AAL21975.1| putative enzyme with a TIM-barrel fold [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62129243|gb|AAX66946.1| putative enzyme with a TIM-barrel fold [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161365428|gb|ABX69196.1| hypothetical protein SPAB_03865 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404094|gb|ACF64316.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194710162|gb|ACF89383.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633383|gb|EDX51797.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197241198|gb|EDY23818.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290700|gb|EDY30054.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938901|gb|ACH76234.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603602|gb|EDZ02147.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205273804|emb|CAR38799.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205331123|gb|EDZ17887.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205343423|gb|EDZ30187.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347039|gb|EDZ33670.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469421|gb|ACN47251.1| hypothetical protein SPC_3165 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248231|emb|CBG26068.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995265|gb|ACY90150.1| hypothetical protein STM14_3744 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159655|emb|CBW19174.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914122|dbj|BAJ38096.1| hypothetical protein STMDT12_C31530 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087532|emb|CBY97297.1| Proline synthetase co-transcribed bacterial homolog protein
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321225773|gb|EFX50827.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322716093|gb|EFZ07664.1| UPF0001 protein yggS [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323131456|gb|ADX18886.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326624847|gb|EGE31192.1| UPF0001 protein yggS [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326629136|gb|EGE35479.1| pyridoxal phosphate enzyme [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332989967|gb|AEF08950.1| hypothetical protein STMUK_3088 [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 234
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|126738690|ref|ZP_01754395.1| alanine racemase domain protein [Roseobacter sp. SK209-2-6]
gi|126720489|gb|EBA17195.1| alanine racemase domain protein [Roseobacter sp. SK209-2-6]
Length = 219
Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats.
Identities = 97/221 (43%), Positives = 127/221 (57%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L+ K +IE + A R SV L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MS----LEDIKARIEAAEGKAGRALGSVQLIAVSKVQPNERVEAVLQEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW K++ + L IG LQ+NK + + LFDVI +V R K A L+ +
Sbjct: 57 AAGKWPDFAKQFSGLDLHLIGPLQTNKARQAMELFDVIHSVDRPKLAKTLARLAQEIGNC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P T F+ CR L V+GLMCIPP HF LL+E
Sbjct: 117 PDLFIQVNTGAEEQKAGILPQDTDAFIAECRA-LDLPVQGLMCIPPVEEPAVEHFALLAE 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 176 MADRNGLDGLSMGMSSDFEEAIAMGATHVRVGSAIFGARAY 216
>gi|223936777|ref|ZP_03628687.1| alanine racemase domain protein [bacterium Ellin514]
gi|223894628|gb|EEF61079.1| alanine racemase domain protein [bacterium Ellin514]
Length = 241
Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ +Q+I + A R ++V+L AVSK IR A G +F ENK+QE
Sbjct: 1 MALAENLEKIQQRINAACERAGRQPETVTLQAVSKGQLPAAIREASKLGLTLFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK K +++ IG LQSNK + V F +I++V A + K ++ +
Sbjct: 61 AKAKIGQCPA--NLRWHMIGHLQSNKCRDAVHFFQMIQSVDSLALAQEIDKWADKSAKTM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLL 177
P+ ++VN E K G P+Q ++ +++ + GLM I P +P F L
Sbjct: 119 PILLEVNIAGESSKFGYRPDQLLSELLQINALHKIEIHGLMTIAPWTPEPEKVRPIFQKL 178
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ EC+ L LSMGM+ DFE+AI GAT VRIG+ +FG R
Sbjct: 179 RLLKEECEKILGAPLPHLSMGMSGDFEIAIEEGATIVRIGTALFGPR 225
>gi|261822844|ref|YP_003260950.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
gi|261606857|gb|ACX89343.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
Length = 237
Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIQQNLQDIRQQIATAAQHCARSPEDITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E + + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKVHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +Q+N E KSGIM + + L + GLM IP + + +
Sbjct: 123 PLNILLQINISSEPSKSGIMVAELAELATSVAVLPNLRLRGLMAIPAPETDYEQQIAVFK 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAALLQTLSVNYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYS 233
>gi|157374371|ref|YP_001472971.1| alanine racemase domain-containing protein [Shewanella sediminis
HAW-EB3]
gi|157316745|gb|ABV35843.1| alanine racemase domain protein [Shewanella sediminis HAW-EB3]
Length = 234
Score = 181 bits (458), Expect = 7e-44, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +I +A + R D + L+AVSK I A + GQ +F EN +QE
Sbjct: 3 TIADRLANAQHRITQAAKFSSRNADEIQLLAVSKTKPITDIIAAYAAGQRLFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K ++Q FIG LQSNK + LFD + T+ R+K A L+ + + L
Sbjct: 63 ESKVNELKSICPEIQWHFIGPLQSNKTKVVAGLFDWMHTLCRDKIAVRLNDQRPDALKPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVN E KSGI+P++ +L + GLM IP A + + ++
Sbjct: 123 NICIQVNISGEASKSGIVPSELMVLANTIDTLPKLTLRGLMAIPTATDDKRKQKDEFQQL 182
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ D E A+ G+T VRIGS IFGER
Sbjct: 183 QSLFLKLKAIYPDLDTLSMGMSNDLEQAVEHGSTMVRIGSAIFGER 228
>gi|153001553|ref|YP_001367234.1| alanine racemase domain-containing protein [Shewanella baltica
OS185]
gi|151366171|gb|ABS09171.1| alanine racemase domain protein [Shewanella baltica OS185]
Length = 232
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 117/228 (51%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+SL+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSISLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP F +L
Sbjct: 123 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNY 230
>gi|260775566|ref|ZP_05884463.1| hypothetical protein VIC_000944 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608747|gb|EEX34912.1| hypothetical protein VIC_000944 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 238
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 105/233 (45%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE + RP SV L+AVSK I A GQV F EN +Q
Sbjct: 3 SIQQNIEQITSQIEAAQQKCGRPLGSVQLLAVSKTKPFDAILEAARAGQVAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E ++ FIG +QSNK + F + TV R K A L+ + ++
Sbjct: 63 VDKVAYFAENHPELTLEWHFIGPIQSNKTRHVAESFAWVHTVDRAKIAQRLNDQRPQEMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG ++ L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSSESSKSGASDDEIFALAELISSLPNLTLRGLMSIPANVSDYQSQLAAFS 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A E L LSMGM+ D E AI +G T VRIG+ IFG R
Sbjct: 183 HLAELKNRLAQRYPELNLDTLSMGMSGDMEAAIEAGTTMVRIGTAIFGARDYS 235
>gi|86747509|ref|YP_484005.1| hypothetical protein RPB_0383 [Rhodopseudomonas palustris HaA2]
gi|86570537|gb|ABD05094.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
HaA2]
Length = 221
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 99/213 (46%), Positives = 131/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + A+R +DSV+L+AVSK ++ I L+ GQ +F EN++QEAK KW
Sbjct: 9 LAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRVQEAKAKWP 68
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
PL D L IG LQSNK E V+LFD I +V RE L+ + R + +++Q
Sbjct: 69 PLLESHPDTALHLIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASGRAVELFVQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI P F+ CR ++ L + GLMCIPP P PHF L ++IA+
Sbjct: 129 INTGEEPQKAGIAPQDADAFIAACRDRFGLTIAGLMCIPPVDEAPAPHFALTAKIAKRNG 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ DF AIA GAT VR+GS IFG R
Sbjct: 189 LAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR 221
>gi|59802221|ref|YP_208933.1| hypothetical protein NGO1907 [Neisseria gonorrhoeae FA 1090]
gi|194099840|ref|YP_002002975.1| hypothetical protein NGK_2350 [Neisseria gonorrhoeae NCCP11945]
gi|240013042|ref|ZP_04719955.1| hypothetical protein NgonD_00025 [Neisseria gonorrhoeae DGI18]
gi|240081905|ref|ZP_04726448.1| hypothetical protein NgonF_11448 [Neisseria gonorrhoeae FA19]
gi|240114186|ref|ZP_04728676.1| hypothetical protein NgonM_11571 [Neisseria gonorrhoeae MS11]
gi|240116824|ref|ZP_04730886.1| hypothetical protein NgonPID1_11401 [Neisseria gonorrhoeae PID18]
gi|240122235|ref|ZP_04735197.1| hypothetical protein NgonPI_10825 [Neisseria gonorrhoeae PID24-1]
gi|254494791|ref|ZP_05107962.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268598003|ref|ZP_06132170.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268600258|ref|ZP_06134425.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602502|ref|ZP_06136669.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|293398056|ref|ZP_06642262.1| YggS family pyridoxal phosphate enzyme [Neisseria gonorrhoeae F62]
gi|59719116|gb|AAW90521.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193935130|gb|ACF30954.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226513831|gb|EEH63176.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268551791|gb|EEZ46810.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268584389|gb|EEZ49065.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268586633|gb|EEZ51309.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291612002|gb|EFF41071.1| YggS family pyridoxal phosphate enzyme [Neisseria gonorrhoeae F62]
gi|317165308|gb|ADV08849.1| hypothetical protein NGTW08_1894 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 228
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|330899348|gb|EGH30767.1| hypothetical protein PSYJA_18016 [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 228
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAERDPTSVGLLAVSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|261401838|ref|ZP_05987963.1| pyridoxal phosphate enzyme, YggS family [Neisseria lactamica ATCC
23970]
gi|269208020|gb|EEZ74475.1| pyridoxal phosphate enzyme, YggS family [Neisseria lactamica ATCC
23970]
Length = 234
Score = 181 bits (458), Expect = 8e-44, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|313667381|ref|YP_004047665.1| hypothetical protein NLA_0230 [Neisseria lactamica ST-640]
gi|313004843|emb|CBN86268.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 234
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSEAELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|50122967|ref|YP_052134.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
gi|49613493|emb|CAG76944.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
Length = 270
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 103/227 (45%), Gaps = 11/227 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A + G I ENK+QEA KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPESRLRMAYTAGCRILGENKVQEAYGKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFASEFQALDSLRLAEALDRRLHVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P F+ L V GLM + + F L +
Sbjct: 149 VNTSGEASKYGLSPEDVPAFIQALPAFSALRVRGLMTLALFSSEAERVRQCFIRLRNLRD 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 RLQQNAPVDIRLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 255
>gi|258514369|ref|YP_003190591.1| alanine racemase domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778074|gb|ACV61968.1| alanine racemase domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 225
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + + K++I +A + R D ++L+AV+K V I+ CG F EN++QE
Sbjct: 1 MNIRDNILLVKERIAAAACRSGRDPDDITLLAVTKNVSVDLIKQVYDCGFKEFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KK D IG LQ+NK+ I+ +I ++ A ++ + + Q+ +
Sbjct: 61 LQKKIA--LLPDDAVWHMIGHLQTNKIKYIIDKIGLIHSLDSLSLAREINRQALLQNMKV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +++N E K GI ++ ++FV L L V GLM + P P+ + +
Sbjct: 119 QVLLEINISGEQSKFGIPLSEAREFVKLVNCLPGLTVRGLMTMAPYTTYPEEVRPIFRGL 178
Query: 181 AR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E + LSMGM+ DFE+A+ GAT VR+G+ +FG
Sbjct: 179 KDLSERISRESSEINMDVLSMGMSNDFEVAVEEGATIVRVGTALFG 224
>gi|119899756|ref|YP_934969.1| hypothetical protein azo3467 [Azoarcus sp. BH72]
gi|119672169|emb|CAL96083.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 237
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 110/226 (48%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ ++I ++A A R +V L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 SISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + ++ FIG LQSNK + F + ++ R K A LS + L
Sbjct: 63 LAKLAEVDDPA-LEWHFIGPLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V +QVN E KSG+ P++ +L + GLMCIP + + +
Sbjct: 122 VCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLMCIPEPTDDVTLQRRRFATLR 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A L LSMGM+ D E A+A GAT VR+G+ IFG RP
Sbjct: 182 GLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARP 227
>gi|302386413|ref|YP_003822235.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
gi|302197041|gb|ADL04612.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
Length = 231
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ K ++ + A R + V+L+AVSK S I A S G F ENK+QE
Sbjct: 2 VKENLEEVKSRMSAACKRAGRNPEEVTLIAVSKTKPSAMISEAYSAGVRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + D++ IG LQ NKV +++ +I +V + A + E ++S +
Sbjct: 62 EKHLA--LPEDIRWHMIGHLQRNKVKQVIDKAVLIHSVDSVRLAVQIEEEAARKSLVADI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G T+ + + ++GLM I P + N + + + ++
Sbjct: 120 LLEVNVAEEDSKYGFKLEGTESAIREIASLPHVRIKGLMTIAPFVENSEENRPVFKKLRQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 FYVDMQSKNIDNVNMNMLSMGMTGDYEVAIEEGATLVRVGTGIFGTRYY 228
>gi|261823249|ref|YP_003261355.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
gi|261607262|gb|ACX89748.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
Length = 270
Score = 181 bits (458), Expect = 9e-44, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +I + R +V L+ VSK ++R+A G I ENK+QEA
Sbjct: 25 DFQRNLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPENRLRMAYMAGCRIVGENKVQEA 84
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+KW ++ D+Q IG LQ+NK + + + + L ++ + R L
Sbjct: 85 NRKWEAMQDLADLQWSVIGHLQTNKAKLVARFASEFQALDSLRLVEALDRRLLVEGRSLD 144
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V++QVNT E K G+ P F+ L V GLM + + F L
Sbjct: 145 VFVQVNTSGEASKYGLSPEDVPAFIQALPAFPALRVRGLMTLALFSNEAERVRQCFIRLR 204
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 205 NLRDRLQQNAPAGIGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 255
>gi|330446899|ref|ZP_08310550.1| alanine racemase, N-terminal domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491090|dbj|GAA05047.1| alanine racemase, N-terminal domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 236
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 101/231 (43%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +I + R DSV L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKQNIAEVIHQITLATEKCGRAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K FIG +QSNK + FD + ++ R KTA LS +
Sbjct: 63 VDKVNHFSTHSAKNLLVWHFIGPIQSNKTRLVAEHFDWVHSIDRVKTAKRLSDQRPANMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN+ E KSG+ + + + GLM IP + F
Sbjct: 123 PLQVLLQVNSNDEETKSGVSLAELPALAAEIAAMPNIELRGLMSIPQPATDFDSQFATFK 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 TLSDALEQLKTTYPQVDTLSMGMSDDMEAAIAAGSTIVRIGTAIFGARDYS 233
>gi|207858361|ref|YP_002245012.1| hypothetical protein SEN2943 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|206710164|emb|CAR34520.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 234
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|300718247|ref|YP_003743050.1| hypothetical protein [Erwinia billingiae Eb661]
gi|299064083|emb|CAX61203.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
Length = 235
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R ++L+AVSK + A++ GQ F EN +QE
Sbjct: 3 SIQHNLQQVRERISAAAAKCGRDPAEITLLAVSKTKPQSAVEEAIAAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L ++ FIG LQSNK + FD TV R K A+ L+ + L
Sbjct: 63 VDKILALGNSA-LEWHFIGPLQSNKSRLVAENFDWCHTVDRLKIATRLNEQRPADLPSLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + +L + GLM IP + ++A
Sbjct: 122 VLIQINISDENSKSGIMLEALSELAKEIALLPRLTLRGLMAIPAPEAEYSRQLAVCQQMA 181
Query: 182 RECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 EAFNALKKDYPAVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDYS 229
>gi|294139814|ref|YP_003555792.1| hypothetical protein SVI_1043 [Shewanella violacea DSS12]
gi|293326283|dbj|BAJ01014.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 231
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 82/229 (35%), Positives = 118/229 (51%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +IE +A ++ R + + L+AVSK + I A + GQ F EN +QE
Sbjct: 3 TIADRLANAQHRIEQAAQISSRNANEIQLLAVSKTKPNSDILAAYTAGQRRFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K +++ FIG LQSNK I S F + TVSREK AS L+ + K+ L
Sbjct: 63 ESKVNALKDCCPEIEWHFIGPLQSNKTKIIASHFHWMHTVSREKIASRLNEQRPKEMPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQ+N E KSG P + + Q L + GLM IP A + + ++
Sbjct: 123 NICIQINISGEASKSGATPEELESLASKIEQMPNLILRGLMAIPTATSDKQLQTDEFQQL 182
Query: 181 ---ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+E K + LSMGM+ D E AIA G+T VRIGS IFGER
Sbjct: 183 QTLYQELKSLYPRVDTLSMGMSNDLEQAIAQGSTMVRIGSAIFGERDKP 231
>gi|154483520|ref|ZP_02025968.1| hypothetical protein EUBVEN_01224 [Eubacterium ventriosum ATCC
27560]
gi|149735430|gb|EDM51316.1| hypothetical protein EUBVEN_01224 [Eubacterium ventriosum ATCC
27560]
Length = 230
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++ I+ + R + V+L+AVSK I AL G + + ENK+QE
Sbjct: 2 IVENIKQVEENIKQACEKVGRNPEEVTLIAVSKTKPYTAIEEALPSGILDYGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ +++ IG LQ NKV +V +I +V + A + E K V
Sbjct: 62 DKFD--ILPKNIRWHMIGHLQRNKVKYLVGKVQLIHSVDSLRLAEQIEKEFAKADEIANV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K GI +T++ + + + ++GLM I P NP+ + + +
Sbjct: 120 LIEVNMAQEESKFGITSQETEELIREIAKLPHVRIQGLMTIAPFTDNPETNRVYFKNMKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDINNKNIDNVSMNVLSMGMTGDYQVAVEEGATMVRVGTGIFGERNYN 229
>gi|269137633|ref|YP_003294333.1| hypothetical protein ETAE_0275 [Edwardsiella tarda EIB202]
gi|267983293|gb|ACY83122.1| hypothetical protein ETAE_0275 [Edwardsiella tarda EIB202]
gi|304557698|gb|ADM40362.1| hypothetical protein ETAF_0238 [Edwardsiella tarda FL6-60]
Length = 236
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
++ + L +Q + +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 TIKHNLDAVRQHLVRAAEQCGRDPRDITLLAVSKTKPIEDIDAAIAAGQRAFGENYVQEG 63
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG LQSNK + FD I TV R K A L+ + +
Sbjct: 64 VSKIQHYRQQPQGDALEWHFIGPLQSNKSRPVAEHFDWIHTVDRVKIAQRLNEQRPAELE 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q +L + GLM IP +P + +
Sbjct: 124 PLNVLIQVNISDEQSKSGITLEQIDALADAISQLPRLRLRGLMAIPAPEDDPARQLAVCT 183
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A+ +L LS+GMT D E AI +G+T VRIG+ IFG R T
Sbjct: 184 RMAQALSALQRRYPQLDTLSLGMTHDMEAAITAGSTLVRIGTAIFGARDYGT 235
>gi|261250164|ref|ZP_05942740.1| hypothetical protein VIA_000184 [Vibrio orientalis CIP 102891]
gi|260939280|gb|EEX95266.1| hypothetical protein VIA_000184 [Vibrio orientalis CIP 102891]
Length = 238
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ ++ +IE + R +++V L+AVSK ++ I A GQ+ F EN +Q
Sbjct: 3 SIQQNIEQITSQIEAAQQKCGRSRETVQLLAVSKTKPNEAILEAARAGQLAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E ++ FIG +QSNK + F + T+ R K A L+ + S
Sbjct: 63 ADKVAHFSEHHPELALEWHFIGPIQSNKSRHVAENFAWVHTIDRAKIAQRLNDQRPAGSA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
+ V +QVNT E KSG+ ++ + L L + GLM IP + + F
Sbjct: 123 PIQVLMQVNTSGEQSKSGLNDDEIFELAELISSLPNLTLRGLMSIPANVTDYASQLGAFT 182
Query: 176 LLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ + K+ LSMGM+ D E A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAQRYPEQKIDTLSMGMSGDMEAAVEAGSTMVRIGTAIFGARDYS 235
>gi|291563462|emb|CBL42278.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SS3/4]
Length = 227
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++++ + + A R V+L++VSK + A G+ + ENK+QE
Sbjct: 1 MSVAENIKNVRERMNAACLRAGRDPKEVTLISVSKTKPVSMLMEAYEAGERDYGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + + D + IG LQ+NKV +++ +I + A + E K+
Sbjct: 61 ITEKRPQIPE--DAKFHMIGHLQTNKVGQVIDKVVLIHSCDSVHLAEKIEKEAAKRDMIA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN E K G+ + + + V+G+M I P + N + + E+
Sbjct: 119 NVLLEVNVAREESKFGMFLEDVIPNLKEIQAFPHVCVKGMMTIAPNVENAEENRKYFKEL 178
Query: 181 AR---ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K ++ LSMGMT DFE+A+ GAT +R+G+GIFG R
Sbjct: 179 YQLYVDIKNKNIDNGTMSVLSMGMTGDFEVAVEEGATMIRVGTGIFGSR 227
>gi|291524839|emb|CBK90426.1| pyridoxal phosphate enzyme, YggS family [Eubacterium rectale DSM
17629]
Length = 232
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 2 LKDNLHQVQQNIKAACDRAHRNYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 62 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G ++ V + ++++GLM I P + +P+ + +I
Sbjct: 120 LVEVNIAGEASKFGTSRDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERDYS 229
>gi|254510435|ref|ZP_05122502.1| pyridoxal phosphate enzyme, YggS family [Rhodobacteraceae bacterium
KLH11]
gi|221534146|gb|EEE37134.1| pyridoxal phosphate enzyme, YggS family [Rhodobacteraceae bacterium
KLH11]
Length = 219
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 96/219 (43%), Positives = 128/219 (58%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ +I + A R K +V L+AVSK+ +++++ L G F EN++QE
Sbjct: 1 MS----LQEITDRIATAETAAGRSKGAVKLIAVSKVQPNERVKAVLEQGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++ DV L IG LQ+NK + + L D I +V R K A L+ +
Sbjct: 57 AAGKWPTFREDFPDVDLHLIGPLQTNKARQAMELCDAIHSVDRPKLAKTLARLAQEIGGC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P+ F+ CR L V GLMC+PP P HF LL++
Sbjct: 117 PDLFIQVNTGEEQQKAGILPSDADAFIKECRG-LDLPVRGLMCLPPVEEEPALHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAERNGLDGLSMGMSGDFETAIALGATHVRVGSAIFGER 214
>gi|195953925|ref|YP_002122215.1| alanine racemase domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933537|gb|ACG58237.1| alanine racemase domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 224
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 14/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +++ +KIE +A+ A R K+ + L+AV+K V I+ A S G +F ENK+QE
Sbjct: 2 LKERIEEVYEKIEKAALRASRKKEDIKLLAVTKTVPEDVIKEAYSLGIRLFGENKVQEFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L+ D++ FIG++Q+NKV + + +I +V R+ +S M + +
Sbjct: 62 RKYEALKDL-DIEWHFIGAIQTNKVKYLKNKVKLIHSVDRKAIVDEISKRME----HIDI 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN G E KSG+ N K+ K +N++GLMCIPP + + +++
Sbjct: 117 LIEVNVGQESSKSGVEENHLKELTEYVLSKPNINLKGLMCIPPYFEDTEKVRPFFAKLRN 176
Query: 183 ---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
KL +LSMGM+ DFELAI GAT +RIG+ +FG+R
Sbjct: 177 LKEDLEKTFNIKLPELSMGMSHDFELAIEEGATIIRIGTYLFGQRQY 223
>gi|300900232|ref|ZP_07118416.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 198-1]
gi|300356248|gb|EFJ72118.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 198-1]
Length = 234
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A+ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAQAIDAGQRQFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 61 EGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 121 PPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T RIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMGRIGTAIFGARDYS 232
>gi|227873142|ref|ZP_03991434.1| TIM-barrel fold protein [Oribacterium sinus F0268]
gi|227841036|gb|EEJ51374.1| TIM-barrel fold protein [Oribacterium sinus F0268]
Length = 239
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 66/235 (28%), Positives = 105/235 (44%), Gaps = 17/235 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +Q+ ++ I + + R + V L+ VSK + I+ A S G F ENK+QE
Sbjct: 1 MEIE--IQIVRENIRKACERSGRKPEEVLLIGVSKTKPYEAIQEAYSFGIRDFGENKVQE 58
Query: 61 AKKKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ K+ L + IGSLQ NKV + +I ++ A + E K
Sbjct: 59 IRDKFALLQEDSLLLKDAPSFHMIGSLQKNKVKYLPGRVKMIHSIDSLPLALEVEKEYAK 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ V ++VN E KSG + + + C+ + + G M + P NP+ +
Sbjct: 119 KEELASVLLEVNVAKEESKSGFFLEEVEQALEECKDLPHVKLCGFMTVAPFTENPEENRV 178
Query: 176 LLSEIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L +LSMGM+ D+E+A+ GAT VR+GS IFG R
Sbjct: 179 HFRALKNLLTNMQKKFPALPLKELSMGMSGDYEVAVEEGATMVRVGSFIFGARDY 233
>gi|291528980|emb|CBK94566.1| pyridoxal phosphate enzyme, YggS family [Eubacterium rectale
M104/1]
Length = 232
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 2 LKDNLHQVQQNIKAACDRAHRSYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 62 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G ++ V + ++++GLM I P + +P+ + +I
Sbjct: 120 LVEVNIAGETSKFGTSRDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERDYS 229
>gi|56698252|ref|YP_168625.1| alanine racemase domain-containing protein [Ruegeria pomeroyi
DSS-3]
gi|56679989|gb|AAV96655.1| alanine racemase domain protein [Ruegeria pomeroyi DSS-3]
Length = 232
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ K +I + A RP SV L+AVSK+ ++++ L G IF EN++QE
Sbjct: 14 MS----LQEIKNRIARAEQAANRPDGSVKLIAVSKVQPNERVEAVLEQGHRIFGENRVQE 69
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW + +D V+L IG LQ+NK + + L I +V R K A+ L+ + R
Sbjct: 70 AAGKWPAFMERYDGVELHLIGPLQTNKARQAMELVHAIHSVDRPKLATTLARLAQELGRC 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GIMP + F+ CR L V+GLMCIPP P HF LL++
Sbjct: 130 PDLFIQVNTGEEDQKAGIMPAEADGFIAECRA-LDLPVQGLMCIPPVEEEPALHFALLAK 188
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L+ LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 189 IAARNGLSGLSMGMSGDFESAIALGATHVRVGSAIFGDR 227
>gi|239623979|ref|ZP_04667010.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522010|gb|EEQ61876.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 226
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++IE + I + R +V+L+AVSK + A + G F ENK+QE
Sbjct: 2 IKEHLIEVNRRIEQACIRSGRDPKAVTLIAVSKTKPVPMLEEAYAAGARDFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D++ IG LQ NKVS+++ +I +V + A + + K + +
Sbjct: 62 AKKPE--LPEDIRWHMIGHLQRNKVSQVLGKAVLIHSVDSLRLAQQIETDAAKAGLDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G M + +D ++ + ++++GLM I P + NP+ + + ++
Sbjct: 120 LLEVNVAREESKYGFMLEEVEDAIMTIKDFPHVHIKGLMTIAPFVENPEENRGIFKKLFE 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 FAVDIDKKNIDNVTMDVLSMGMTGDYEVAVEEGATMVRVGTGIFGVR 226
>gi|222099903|ref|YP_002534471.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
gi|221572293|gb|ACM23105.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
Length = 229
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ ++IEN+A+ + R V LV SK + +++ G F EN+ Q+
Sbjct: 1 MGLKENLEKVMERIENAALRSGRDPSEVKLVVASKYANVQEMEELFLLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK K + FIG +Q+NKV IV ++I +V R + + K ++
Sbjct: 61 LIKK-SEYFKGKPIIWHFIGRIQTNKVKYIVPRCELIHSVWRVEELEEIEKRATKINKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+VN E K+G+ ++F+ +C++ + V G M + P + +P+ + E+
Sbjct: 120 KILIEVNVFGEESKAGLSVESVEEFLKICQRFDHVEVLGFMTMAPYVEDPEEVRWGFREL 179
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RKLRDELSQRFSGNIKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|237798174|ref|ZP_04586635.1| hypothetical protein POR16_04969 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021026|gb|EGI01083.1| hypothetical protein POR16_04969 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 228
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A A R SV L+AVSK + +R A + G + F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAAHAANRDPASVGLLAVSKTKPASDLREAYTEGLLHFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQLELTDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPDALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P + +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPELAAAINVLPRLKLRGLMAIPEPTDDPHEQAAAFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLGLPLDTLSMGMSNDLEAAIAQGATWVRIGTALFGARDY 225
>gi|238924096|ref|YP_002937612.1| hypothetical protein EUBREC_1734 [Eubacterium rectale ATCC 33656]
gi|238875771|gb|ACR75478.1| hypothetical protein EUBREC_1734 [Eubacterium rectale ATCC 33656]
Length = 247
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 17 LKDNLHQVQQNIKAACDRAHRNYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 77 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G ++ V + ++++GLM I P + +P+ + +I
Sbjct: 135 LVEVNIAGEESKFGTSQDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 194
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 195 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERDYS 244
>gi|158521192|ref|YP_001529062.1| alanine racemase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158510018|gb|ABW66985.1| alanine racemase domain protein [Desulfococcus oleovorans Hxd3]
Length = 227
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 86/227 (37%), Positives = 117/227 (51%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL+ +++I+ + R +V LVAVSK +I A++ G EN +QEAK
Sbjct: 1 MKDKLEQIRERIQAATEACGRDPATVRLVAVSKTQPVSRIAEAIAAGATDLGENYIQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K V FIG LQSNK VSLFD I TV K A+ + K + +
Sbjct: 61 EKIES-LAGHSVCWHFIGHLQSNKAKIAVSLFDWIHTVDSVKLAAEIDKHAAKLGKVQKI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVNTG E KSG+ P V + + V+GLM IPP +P +PHF L
Sbjct: 120 LIQVNTGQERSKSGVAPEDMAGLVTEISRFAHVTVQGLMAIPPFYADPEAVRPHFKKLRM 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +LSMGM+ DF+ AIA GAT VRIG+ IFG R
Sbjct: 180 LRDAIEKQQIPNVVMEELSMGMSGDFDAAIAEGATMVRIGTAIFGAR 226
>gi|253690200|ref|YP_003019390.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756778|gb|ACT14854.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 280
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 11/227 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +IE + R +V L+ VSK ++R+A G + ENK+QEA +KW
Sbjct: 29 NLAAVQARIEAACRRVDRDPATVRLLPVSKTKPESRLRMAHMAGCRVLGENKVQEAYRKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 ESMQDLADLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P+ F+ L V GLM + + F L ++
Sbjct: 149 VNTSGEASKYGLSPDDVPAFIQALPTFSALRVRGLMTLALFSSEAERVRQCFVRLRQLRE 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 RLQQNLPTGIDLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 255
>gi|154248852|ref|YP_001409677.1| alanine racemase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154152788|gb|ABS60020.1| alanine racemase domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 235
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 8/223 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + KI A+ R D + +VAV+K + I+ A G IF EN QE
Sbjct: 12 IKKNYEYVMNKISEHALKVGRKPDEIKIVAVTKTHPVEIIKTAYDVGLRIFGENYAQEL- 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D++ +IG +Q+NK+ IV + +I +V R ++ K + +
Sbjct: 71 RDKSEQLNFPDIEWHYIGRIQTNKLKYIVPVAYLIHSVYRINEIEEINKIASKMGKIQKI 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLSEI 180
I+VN E K GI PN +D + + + V GLM + P + + +F +L EI
Sbjct: 131 LIEVNVSGEETKGGISPNNIEDLLKESEKFKNVQVIGLMTMAPFVEPESTRKYFRMLREI 190
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+A+ G+T VRIG+ IFGER
Sbjct: 191 RDGISKRFPNLKELSMGMSNDFEVAVEEGSTIVRIGTAIFGER 233
>gi|115522420|ref|YP_779331.1| hypothetical protein RPE_0392 [Rhodopseudomonas palustris BisA53]
gi|115516367|gb|ABJ04351.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisA53]
Length = 221
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 3/221 (1%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + L ++ I + A+R + VSL+AVSK ++ I L GQ F EN++
Sbjct: 1 MNDAVATGLSAVERAIARACADARRDRGEVSLIAVSKTFPAEAIVPVLQAGQRAFGENRV 60
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEAK KW + D L IG LQSNK + +LFD I +V R+ A L+ E+ +
Sbjct: 61 QEAKAKWPALRQSYPDTVLHLIGPLQSNKAKDAAALFDAIHSVDRDSLAQALAKELPLHN 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R + +++Q+NTG E QK+G+ P + DF+ CR+ + L + GLMCIPP P PHF L
Sbjct: 121 RLIELFVQLNTGEEPQKAGVAPAEADDFLKRCREHHGLEIAGLMCIPPVDEAPAPHFALT 180
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++IA+ LTKLSMGM+ DF AI GAT +R+GS IFG R
Sbjct: 181 AKIAKRNGLTKLSMGMSADFATAIQFGATHIRVGSAIFGHR 221
>gi|237749379|ref|ZP_04579859.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380741|gb|EEO30832.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 236
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 82/233 (35%), Positives = 111/233 (47%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + N LQ + IE +A A R +V L+AVSK + I A GQ+ F EN Q
Sbjct: 1 MTDITNHLQTITKNIEAAASKANRGPHTVHLLAVSKTRPPEDILEAAEAGQLAFGENYEQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K +R+ + FIG +QSNK I FD + +V REK A LS + +
Sbjct: 61 EAVSKIESIRQSRPDLKLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSEQRPEN 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY- 175
L V +QVN E KSG++P + L + GLM IP +P
Sbjct: 121 LPPLNVCLQVNISKEKTKSGVLPEEVSVLAKAVSAMPNLRLRGLMAIPEPESDPVKQREP 180
Query: 176 --LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L LSMGM+ D E AI GAT+VRIG+ IFG+R
Sbjct: 181 FSAMKTLFDQLVQSGYDLDTLSMGMSDDMETAIQEGATTVRIGTAIFGKRSYP 233
>gi|330872136|gb|EGH06285.1| hypothetical protein Pgy4_01140 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 228
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|229829073|ref|ZP_04455142.1| hypothetical protein GCWU000342_01158 [Shuttleworthia satelles DSM
14600]
gi|229792236|gb|EEP28350.1| hypothetical protein GCWU000342_01158 [Shuttleworthia satelles DSM
14600]
Length = 235
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 16/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I + A R V+LVAVSK I+ G F EN +QE
Sbjct: 2 LAENLKTVRENITEACRRANRDPSEVTLVAVSKTKPEADIQEIYGQGVRDFGENYVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI---ETVSREKTASLLSLEMIKQSRF 119
+K D++ IG LQ NKV + D I +V + A ++++ K R
Sbjct: 62 EKID--HLPGDIRWHMIGHLQRNKVKYLARRADSIALIHSVDTYRLAEEINIQAKKNKRI 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ + ++VN E K GI + +++ GLM P + N + +
Sbjct: 120 IDILVEVNIADEDSKFGISREDALSLIQDIAGLDGIHIRGLMTSAPNVKNAEENRAYFRS 179
Query: 180 IA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
I ++ LSMGMT D+++AI G+T VR+G+ IFG R
Sbjct: 180 IKALAVDINSRNIDNVEMDILSMGMTNDYQIAIEEGSTMVRVGTAIFGARDY 231
>gi|237807739|ref|YP_002892179.1| alanine racemase domain-containing protein [Tolumonas auensis DSM
9187]
gi|237500000|gb|ACQ92593.1| alanine racemase domain protein [Tolumonas auensis DSM 9187]
Length = 233
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + ++L K++I + A A R + + L+AVSK + I+ A GQ +F E+ +Q
Sbjct: 1 MNDIESRLLAIKEQITSHARQAGRSPNEIKLLAVSKTKPVEAIQEAYQAGQRLFGESYVQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K L D + FIG LQSNK + FD + ++ REKTA L+ +
Sbjct: 61 EAITKIQQLNNSSDYAGIEWHFIGPLQSNKTKLVAEHFDWVHSIDREKTAQRLNEQRPAN 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPH 173
L V IQVN E KSGI ++ + + L + GLM I + + +
Sbjct: 121 LPALNVCIQVNISGERTKSGITADEVFGLAGIISEFPHLKLRGLMTIAENTDDLDVVRDN 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F + E+ K + LSMGMT D +AI+SG+T VRIG+ IFG R +
Sbjct: 181 FLHMQELFNRLKNQYPSVDTLSMGMTDDMSVAISSGSTMVRIGTAIFGSREYK 233
>gi|83747264|ref|ZP_00944306.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|207744253|ref|YP_002260645.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum IPO1609]
gi|83726088|gb|EAP73224.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|206595658|emb|CAQ62585.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum IPO1609]
Length = 240
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 80/235 (34%), Positives = 111/235 (47%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYMQ 60
Query: 60 EAKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRNGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKLAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
L V +++N + K G+ P+ +L + GLM +P G+P
Sbjct: 121 GLPPLQVCLEINISRQASKHGVPPDADGILALARAVAALPRLQLRGLMAVPEPAGDPAAR 180
Query: 174 FYL---LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRTLADRLREAGLPIDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|320108336|ref|YP_004183926.1| alanine racemase domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319926857|gb|ADV83932.1| alanine racemase domain protein [Terriglobus saanensis SP1PR4]
Length = 235
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/234 (31%), Positives = 108/234 (46%), Gaps = 16/234 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I + A R V L+AVSK + + A GQ +F ENK+QE
Sbjct: 1 MSIAENLSEIRAEIAAACEKAGRDASEVKLMAVSKTHPPQMLAEAYRAGQTLFGENKVQE 60
Query: 61 AKKKWIPLRKEWDV-----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ K L ++ IG+LQSNK ++ F I+ V K A+ L+ +
Sbjct: 61 WEHKRDQLHSLIGEEVAKVEMHLIGNLQSNKANKAAWAFSGIDAVDSVKVAAKLNSVSAQ 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKP 172
LPV I+V E K G+ + + + V G M +P + +P
Sbjct: 121 SGLVLPVLIEVKLSEEETKHGLPEYALSGVLREILEFDGIEVRGFMTVPAFTEDVEGARP 180
Query: 173 HFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+F L EI + L +LSMGM+ DF +AI G+T VRIG+GIFG R
Sbjct: 181 YFKKLREIRDAMRSEFHGDLALPELSMGMSHDFAVAIEEGSTCVRIGTGIFGSR 234
>gi|113461358|ref|YP_719427.1| hypothetical protein HS_1215 [Haemophilus somnus 129PT]
gi|112823401|gb|ABI25490.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 231
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 11/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L ++I AKR +VSL+AVSK + I +A GQ F EN +QE
Sbjct: 2 MQIKNNLAKINRQISQYCEQAKRNSSTVSLLAVSKTKPVEDILIAYQAGQTAFGENYVQE 61
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ ++ FIG LQSNK + FD ++T+ REK A+ L+ + +
Sbjct: 62 GVEKIQYFIEQHIQLEWHFIGPLQSNKTKLVAENFDWMQTLDREKIATRLNEQRPHYKQP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI P + + L + GLM IP N ++
Sbjct: 122 LNVLIQINISAENSKSGIQPQEMLSLAKHIQNLPHLRLRGLMAIPEPTDNITAQEQAFNQ 181
Query: 180 ---IARECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +L LSMGM+ D AI G+T VRIG+ IFG+R
Sbjct: 182 MKYLFTQLQLAFPDEKIDTLSMGMSDDMASAIKCGSTMVRIGTAIFGKRN 231
>gi|240000010|ref|ZP_04719934.1| hypothetical protein Ngon3_11093 [Neisseria gonorrhoeae 35/02]
gi|240122409|ref|ZP_04735365.1| hypothetical protein NgonP_00436 [Neisseria gonorrhoeae PID332]
gi|268595816|ref|ZP_06129983.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268680997|ref|ZP_06147859.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268549205|gb|EEZ44623.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268621281|gb|EEZ53681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 228
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 100/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SV L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGREPHSVGLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V ++VN E K G+ P + + + L V GLMC+ A +
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQA 180
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|71909495|ref|YP_287082.1| hypothetical protein Daro_3884 [Dechloromonas aromatica RCB]
gi|71849116|gb|AAZ48612.1| Protein of unknown function UPF0001 [Dechloromonas aromatica RCB]
Length = 229
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/229 (36%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + LQ +I +A A R D+V L+AVSK + A GQ F EN +Q
Sbjct: 1 MSAIADNLQAVHSRIALAAAAAGRSPDTVRLLAVSKTWPLSCVLDAADAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + +++ FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGIDKIAAISGR-NLEWHFIGPLQSNKSRPVAERFDWVHSIERLKIAERLSAQRPAYLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQVN E KSG P++ L + GLM IP + + F
Sbjct: 120 LQVCIQVNVSGEASKSGCAPDEAPALCKSIAALPGLRLRGLMAIPEPTDDLDAQRLPFRQ 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L EI + L LSMGM+ D E AIA GAT VRIG+ IFGER
Sbjct: 180 LREIYEHIRASGLPLDTLSMGMSHDLEAAIAEGATIVRIGTAIFGERNY 228
>gi|332991906|gb|AEF01961.1| alanine racemase domain-containing protein [Alteromonas sp. SN2]
Length = 228
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +Q + + A RP +SV L+AVSK I A GQ F EN +QE
Sbjct: 3 TIAERLNSARQDVSLATANANRPPNSVKLLAVSKTKPVSDIMAAYEEGQRTFGENYIQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D++ IG +QSNK + FD +++V REK A L+ + + L
Sbjct: 63 VDKIQQLSALSDIEWHMIGPIQSNKTKIVAENFDWVQSVDREKIARRLNDQRPAEMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E KSG+ P + V ++ +L + GLM IP P L
Sbjct: 123 VCIQVNIDDEASKSGVKPEDVDELVRFITKQDKLCLRGLMAIPKANPDSHEQAQSLSALK 182
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ LS+GM+ D + AIA G+T VRIG+ IFG R
Sbjct: 183 ELFDRYHTNLTNFDTLSVGMSSDMQSAIAHGSTMVRIGTAIFGARN 228
>gi|325981756|ref|YP_004294158.1| hypothetical protein NAL212_1086 [Nitrosomonas sp. AL212]
gi|325531275|gb|ADZ25996.1| protein of unknown function UPF0001 [Nitrosomonas sp. AL212]
Length = 249
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N L KQ+I ++ A R SV L+ V+K V ++++R+A + G ENK+QEA
Sbjct: 11 DIQNNLTTVKQRIVDACKKAGRDPASVRLLPVTKTVPAERLRIAYAAGCHEMGENKIQEA 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K + + +++ IG LQ+NK + + + + K A L + + R +
Sbjct: 71 REK-SEVLSDLNIKWAVIGHLQTNKAKYLARFANEFQALDSLKVAEELDKRLQNEGRAID 129
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLS 178
VY+QVN+ E K G+ P +DFV L ++GLM + + F +
Sbjct: 130 VYVQVNSSGEASKFGLPPEDVRDFVQKLPNYSSLRIKGLMTLAIFSSDHDRVRECFVKMR 189
Query: 179 E----IARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E + +E +LSMGM+ D+ELAI GAT VR+G IFG+RP
Sbjct: 190 EIQAMLRQEAPAGLSFDELSMGMSGDYELAIEEGATVVRVGQAIFGKRPLP 240
>gi|238763261|ref|ZP_04624226.1| alanine racemase [Yersinia kristensenii ATCC 33638]
gi|238698534|gb|EEP91286.1| alanine racemase [Yersinia kristensenii ATCC 33638]
Length = 231
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIEQNLQDVRAQIATAARNCGRSPEEVTLLAVSKTKPVSAIEEAIAAGQYAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 63 VDKIHYFADNAPSAHLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN E KSGI + L++ GLM IP + + +
Sbjct: 123 ALNILIQVNISDEQSKSGITLAELPALAASINALPNLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKASYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|240017614|ref|ZP_04724154.1| hypothetical protein NgonFA_10711 [Neisseria gonorrhoeae FA6140]
gi|240119053|ref|ZP_04733115.1| hypothetical protein NgonPID_11449 [Neisseria gonorrhoeae PID1]
gi|240126744|ref|ZP_04739630.1| hypothetical protein NgonSK_11130 [Neisseria gonorrhoeae SK-92-679]
gi|240127124|ref|ZP_04739785.1| hypothetical protein NgonS_00445 [Neisseria gonorrhoeae SK-93-1035]
gi|268604767|ref|ZP_06138934.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268685321|ref|ZP_06152183.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268685481|ref|ZP_06152343.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268588898|gb|EEZ53574.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268625605|gb|EEZ58005.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268625765|gb|EEZ58165.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 228
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SV L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGREPHSVGLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|160880494|ref|YP_001559462.1| alanine racemase domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429160|gb|ABX42723.1| alanine racemase domain protein [Clostridium phytofermentans ISDg]
Length = 253
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/251 (27%), Positives = 110/251 (43%), Gaps = 32/251 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + QKIE + + R K+ V+L+AVSK + + A G F ENK+QE
Sbjct: 2 IQDNITNVLQKIEAACKRSNRSKEEVTLIAVSKTKPFEMLMEAYHAGLREFGENKVQELC 61
Query: 63 KKWIPLRKE---------------------WDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K E ++ IG LQ NKV IV +I +V
Sbjct: 62 DKCEKFVPESSSAPISITQLDNSSYDSNLSPEINWHMIGHLQRNKVKYIVDKVKLIHSVD 121
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A + +E K+ + + +++N E K G+ P+ + + + V+GLM
Sbjct: 122 SFRLAEQIDIEAKKKGVLVDILVEINIADEESKFGVKPSAVETLIREIASLSSICVKGLM 181
Query: 162 CIPPAMGNPKPHFYLLSEIA-----------RECKLTKLSMGMTRDFELAIASGATSVRI 210
+ P N + + +++ + LSMGMT D+E+AI G+T VR+
Sbjct: 182 TVAPFTENAEENRTYFNKMHQLYVDINEKNIDNVSMKILSMGMTGDYEVAIEEGSTMVRV 241
Query: 211 GSGIFGERPCQ 221
G+GIFGER
Sbjct: 242 GTGIFGERNYS 252
>gi|319411450|emb|CBY91865.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|316931734|ref|YP_004106716.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315599448|gb|ADU41983.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 219
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 92/207 (44%), Positives = 133/207 (64%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKE 71
+I + A+R + V+L+AVSK ++ IR L+ GQ +F EN++QEAK KW + +
Sbjct: 13 EIARACADARRDRSEVTLIAVSKTFEADAIRPVLAAGQRVFGENRVQEAKGKWPALVEEY 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + V+LFD I +V R+ LS + + R L +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAVALFDAIHSVDRDSLCEALSKALPQAGRRLDLFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P+ F++ C++++ L + GLMCIPP P PHF L ++IAR L+KLSM
Sbjct: 133 PQKAGIAPHDADAFLVACQERWGLTICGLMCIPPVDEAPAPHFALCAKIARRNGLSKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF++AI GAT VR+GS IFG R
Sbjct: 193 GMSADFDIAIQFGATHVRVGSAIFGHR 219
>gi|330984657|gb|EGH82760.1| hypothetical protein PLA107_06501 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP NP
Sbjct: 120 LNICIQVNVSGEASKSGCSPQDLPALAAAIIALPRLKLRGLMAIPEPTDNPAAQHASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|325201240|gb|ADY96694.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M01-240149]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|147678163|ref|YP_001212378.1| hypothetical protein PTH_1828 [Pelotomaculum thermopropionicum SI]
gi|146274260|dbj|BAF60009.1| predicted enzyme [Pelotomaculum thermopropionicum SI]
Length = 226
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I+ +A A R + + LVAV+K V + IR LS G E+++QE
Sbjct: 1 MSVLENLNRVRRRIDAAAGRAGRNPEEIKLVAVTKTVAVETIREVLSGGVCCLGESRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ V+ FIG LQ+NKV +I+ +I ++ R A LS +
Sbjct: 61 FLQKYGQ--LPAGVEWHFIGHLQTNKVKKIIGKVSLIHSLDRWSLAEALSRAACEAGTAA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVN E K G++P++T FV + L V GLM I P N + + ++
Sbjct: 119 RVLVQVNIAGEKTKYGLLPSETPQFVAEAARLPGLEVMGLMTIAPWCENAEEVRPVFRQL 178
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ DFE+A+ GA VR+GS IFG R
Sbjct: 179 KELAGKLTGLEGVKMDYLSMGMSGDFEVAVEEGANIVRVGSAIFGGR 225
>gi|296133623|ref|YP_003640870.1| alanine racemase domain protein [Thermincola sp. JR]
gi|296032201|gb|ADG82969.1| alanine racemase domain protein [Thermincola potens JR]
Length = 230
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I +A + R + + L+AVSK V + I+ A G F EN++QE
Sbjct: 5 LRTNLEQIRRNINEAAYKSGRKPEDIKLIAVSKTVPMETIKAAWEMGVTDFGENRVQELT 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + IG LQ NKV IV +I ++ A ++ + + + L V
Sbjct: 65 EKFNE---LPEAKWHLIGHLQKNKVKYIVDKVVLIHSLDSYPLAEEINKRAVARGKCLDV 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E K G+ ++ DF+ + L V+GLM I P +G+P+ + E+ +
Sbjct: 122 LIQVNVAREPTKFGLDLSEVDDFINAVKDLPGLAVKGLMTIAPFVGDPEAVRPVFRELKK 181
Query: 183 ECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ D+ +AI GA VRIG+ IFGER
Sbjct: 182 KFDALKTMEIPSAEMKYLSMGMSNDYRIAIEEGANLVRIGTRIFGER 228
>gi|90023281|ref|YP_529108.1| hypothetical protein Sde_3641 [Saccharophagus degradans 2-40]
gi|89952881|gb|ABD82896.1| Protein of unknown function UPF0001 [Saccharophagus degradans 2-40]
Length = 226
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +Q+I A AKR S+ L+AVSK +++++ A GQ F EN LQEA
Sbjct: 4 IQAQIESVRQQITACANAAKRDPASIKLLAVSKTQPAERLQAAYEAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ FIG +QSNK +I FD + T+ R K A L+ + + L V
Sbjct: 64 DKINALSNL-DIEWHFIGPVQSNKTRDISENFDWVHTLDRLKIAQRLNDQRPAGTPPLNV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E KSG +P++ + + K L + GLM IP F + +
Sbjct: 123 CIQVNIDQEASKSGCLPDELEALALNVADKPNLQLRGLMAIPSPNQQGNCAFSRMRALLE 182
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 183 QLQKHPKLSAMDTLSMGMSGDMAQAIAQGATIVRIGTAIFGARD 226
>gi|188534959|ref|YP_001908756.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
gi|188030001|emb|CAO97885.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
Length = 237
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVQQRISAAAAQCGRCPQEITLLAVSKTKPASAIEEAVAAGQHCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
I L D+ FIG LQSNK + FD TV R + A LS + L
Sbjct: 63 V-DKIQLLANPDLVWHFIGPLQSNKSRLVAENFDWCHTVDRLRIAERLSQQRPDPLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + +L + GLM IP + + ++A
Sbjct: 122 VLIQINISAEQSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDDYASQLAVCQQMA 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LS+GM+ D + AIA+G+ VRIG+ IFG R
Sbjct: 182 AAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGSNMVRIGTAIFGARDY 228
>gi|149917541|ref|ZP_01906038.1| hypothetical protein PPSIR1_25521 [Plesiocystis pacifica SIR-1]
gi|149821604|gb|EDM81002.1| hypothetical protein PPSIR1_25521 [Plesiocystis pacifica SIR-1]
Length = 226
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++++ + + A+R V LVAVSK ++ + A GQ F EN QE
Sbjct: 1 MNTAQRLLAIRERLHAACLAAERDPSQVHLVAVSKTFPAEALDPAYELGQRHFGENYAQE 60
Query: 61 AKKKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K D+ FIG LQSNK+ I + V + A L+ +
Sbjct: 61 LRDKAERFEGLGVTDLSWHFIGRLQSNKIKHIAPRARYVHAVEKRSHAEALAKH---ATG 117
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L +++ VN G E K G++P + L++ GLMC+PP +P+ P+F
Sbjct: 118 PLSIFLSVNIGEEASKGGVLPTEVLARAEELDAVEGLDLCGLMCMPPRCEDPEDAAPYFA 177
Query: 176 LLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++E+A +L +LSMGM+ DF +A+ GAT VR+GS IFG+R
Sbjct: 178 RMAELAEAGRAHGLQLRELSMGMSHDFHVAVRYGATFVRVGSAIFGKR 225
>gi|123443627|ref|YP_001007599.1| hypothetical protein YE3433 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090588|emb|CAL13457.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 231
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 12/230 (5%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ LQ + KI +A R + V+L+AVSK I A++ GQ F EN +Q
Sbjct: 1 MSIIEQNLQDVRAKIAAAARNCGRSPEEVTLLAVSKTKPVSAIEEAIAAGQYAFGENYVQ 60
Query: 60 ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ + ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 61 EGVDKIHYFAESAHASQLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPE 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 121 MPALNILIQVNISDEQSKSGIALAELPALAASISELPHLHLRGLMAIPAPETDYQRQLAV 180
Query: 177 LSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FEQMNQAFLTLKTSYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|116621130|ref|YP_823286.1| alanine racemase domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116224292|gb|ABJ83001.1| alanine racemase domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 221
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 81/222 (36%), Positives = 112/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +IE +A A+R + L+AV+K+ + IR A G F EN +QE +
Sbjct: 4 LTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQEFE 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + IG LQSNK S+ LF I+TV K A L+ + R L V
Sbjct: 64 GKAPEVAGLPGARFHLIGHLQSNKSSKAAELFHSIQTVDSAKLARRLN----ESGRPLDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
I+V E KSG+ P Q D + R LN+ GLM +PP +P+ F L E
Sbjct: 120 MIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTMPPWSEDPEAPRAIFRTLRE 179
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A E L LSMGM+ D E AI G+T VR+G+ +FG R
Sbjct: 180 LAAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRRNKP 221
>gi|294788029|ref|ZP_06753273.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
29453]
gi|294484322|gb|EFG32005.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
29453]
Length = 227
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q Q+I + A+R SV+L+AVSK + IR GQ F EN +QE
Sbjct: 2 MKLEHNRQSVLQQIRIAEQNAQRVSGSVNLIAVSKTFPAADIRQLYQHGQRDFGENYIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K I L ++Q IG +QSNK + + T+ R K A L + L
Sbjct: 62 WQEKTIQLMDCNEIQWHIIGHVQSNKTRAVAEHAHWLHTLDRAKIAERLHEQRPDSLPPL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I++N E K GI P++ +L + GLMC+ A + +
Sbjct: 122 NICIEINIANERTKHGIQPDELLPLARTVLSLSKLRLRGLMCVAQANATETELRQQFNRM 181
Query: 181 AREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A LSMGM+ D +AI GAT VR+G+ IFG+R
Sbjct: 182 AELLRQLQTIAPNADTLSMGMSGDMNVAIECGATMVRVGTAIFGKR 227
>gi|260441618|ref|ZP_05795434.1| hypothetical protein NgonDG_11132 [Neisseria gonorrhoeae DGI2]
gi|291044992|ref|ZP_06570701.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011886|gb|EFE03882.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQADREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|91974918|ref|YP_567577.1| hypothetical protein RPD_0438 [Rhodopseudomonas palustris BisB5]
gi|91681374|gb|ABE37676.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB5]
Length = 221
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 97/213 (45%), Positives = 131/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + A+R + SV+L+AVSK D+ I L+ GQ +F EN++QEAK KW
Sbjct: 9 LAAVEQEIAQACKEARRERGSVTLIAVSKTFDADSILPVLAAGQRVFGENRVQEAKAKWP 68
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +L IG LQSNK E V+LFD I +V RE A LS + R + +++Q
Sbjct: 69 ALVAGHPGTELHLIGPLQSNKAKEAVALFDAIHSVDRESLAEALSKALPLAGRAVELFVQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G+ P F+ CR+++ L + GLMCIPP P PHF L ++IAR
Sbjct: 129 INTGEEPQKAGVAPQDADAFLTACRERWGLTIAGLMCIPPVDEAPAPHFALTAKIARRNG 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+KLSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 189 LSKLSMGMSADFATAIEFGATHVRVGSAIFGHR 221
>gi|298485009|ref|ZP_07003106.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298160419|gb|EFI01443.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 107/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P + +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPELAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|323691969|ref|ZP_08106218.1| YggS family Pyridoxal phosphate enzyme [Clostridium symbiosum
WAL-14673]
gi|323503978|gb|EGB19791.1| YggS family Pyridoxal phosphate enzyme [Clostridium symbiosum
WAL-14673]
Length = 234
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K+ I ++ + R V+L+AVSK + +R A G F ENK+QE
Sbjct: 2 IRENLNDVKENIVSACRASNRQPQDVTLIAVSKTKPVELLREAYDAGIRDFGENKVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D++ IG LQ NKV +++ +I +V A + E K++ + +
Sbjct: 62 EKAPA--LPDDIRWHMIGHLQKNKVRQVIDKTVLIHSVDTVALAEQIEKEAAKKNIDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN G E K G + + V + + ++++GLM I P + N + + + ++
Sbjct: 120 LLEVNIGEEESKYGFRAGEVLEAVTIISKFSHVHIKGLMTIAPFVENSEENRDIFQKLYQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+ AI GAT +R+G+GIFG R
Sbjct: 180 LNVDIKSKNIDNVNMAVLSMGMTGDYMTAIEEGATMIRVGTGIFGAR 226
>gi|71737988|ref|YP_272771.1| hypothetical protein PSPPH_0468 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558541|gb|AAZ37752.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321983|gb|EFW78079.1| hypothetical protein PsgB076_24359 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330912|gb|EFW86886.1| hypothetical protein PsgRace4_06068 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|289625048|ref|ZP_06458002.1| hypothetical protein PsyrpaN_07912 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647863|ref|ZP_06479206.1| hypothetical protein Psyrpa2_08942 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330865795|gb|EGH00504.1| hypothetical protein PSYAE_00805 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|331009665|gb|EGH89721.1| hypothetical protein PSYTB_08206 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 228
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|163803737|ref|ZP_02197595.1| FkuA [Vibrio sp. AND4]
gi|159172456|gb|EDP57324.1| FkuA [Vibrio sp. AND4]
Length = 236
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I + R SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKYGRSPKSVKLLAVSKTKPDEAIVEAYQAGQEAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAKHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPNELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSG+ + + L + L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEESKSGVADAEIFELAELISRLPNLTLRGLMSIPANVPDYQSQLRAFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ ++ + LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 QLEKLKQKLAQQYSDVDTLSMGMSGDMGAAIEAGSTMVRIGTAIFGARDYN 233
>gi|209883515|ref|YP_002287372.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
carboxidovorans OM5]
gi|209871711|gb|ACI91507.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
carboxidovorans OM5]
Length = 229
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 95/215 (44%), Positives = 131/215 (60%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ +++I + A R + SV L+AVSK D+ I ++ GQ +F EN++QEAK K
Sbjct: 15 EGFREVEREIARACADAGRDRGSVELIAVSKTFDADAISPVIAAGQRVFGENRVQEAKAK 74
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W PL++ D++L IG LQSNK E V LFD I +V R LS E+ + R ++
Sbjct: 75 WPPLKEATLDIKLHLIGPLQSNKAREAVMLFDAIHSVDRASLCEALSKEIKSRDRHPLLF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
Q+NTG E QK+G+ P F+ CR++Y L + GLMCIPPA P PHF L ++IA
Sbjct: 135 AQINTGEEPQKAGVAPQDADAFLAACRERYGLTISGLMCIPPAEEAPAPHFALTAKIAER 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF +AI GAT +R+GS IFG+R
Sbjct: 195 NGLKLLSMGMSADFAVAIQFGATHIRVGSAIFGKR 229
>gi|312963622|ref|ZP_07778103.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
gi|311282131|gb|EFQ60731.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
Length = 228
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 103/226 (45%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + ++I +A +R +S+ L+AVSK ++ +R A + G F EN LQ
Sbjct: 1 MSTIADNIGQVSRRIRAAADAVQRDANSIHLLAVSKTKPAQAVREAYAAGMRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQAELTDL-PLSWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPADLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP + +
Sbjct: 120 LNICIQVNVSGEASKSGCTPADLPALANAISALPRLKLRGLMAIPEPTEDRAEQDAAFAT 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRELQAGLNLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDY 225
>gi|207721650|ref|YP_002252089.1| alanine racemase [Ralstonia solanacearum MolK2]
gi|206586811|emb|CAQ17396.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum MolK2]
Length = 240
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 80/235 (34%), Positives = 111/235 (47%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRNGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKLAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
L V +++N + K G+ P+ +L + GLM +P G+P
Sbjct: 121 GLPPLQVCLEINISRQASKHGVPPDADGILALARAVAALPRLQLRGLMAVPEPAGDPAAR 180
Query: 174 FYL---LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRTLADRLREAGLPIDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|317486346|ref|ZP_07945176.1| alanine racemase domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|316922416|gb|EFV43672.1| alanine racemase domain-containing protein [Bilophila wadsworthia
3_1_6]
Length = 236
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 10/229 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG +L+ + ++ +A +A R + V L+AVSK+ + I A GQ +F EN +QEA
Sbjct: 9 LGERLEAVRGRLAGAARIAGRKPEDVRLIAVSKLHPVEAILAAYGFGQRVFGENYVQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L DV+ IG +Q+NK ++ F +I TV K A L+ + + V
Sbjct: 69 AKQEALPDL-DVEWHCIGHVQTNKAKDVTGRFALIHTVDNLKFAETLARRLPEDIPVQRV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
+QVN G E QK+G+ + +L V GLMC+PP + +P+F L E
Sbjct: 128 LLQVNIGNEPQKAGVDEHDLPALAEAVLALPRLEVRGLMCLPPFFDDGEAARPYFARLRE 187
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + KL +LSMGM+ D A+ GAT VR+G+ IFG RP ++
Sbjct: 188 LRDDLEARLGIKLPELSMGMSGDCVQAVEEGATLVRVGTDIFGPRPVKS 236
>gi|330951376|gb|EGH51636.1| hypothetical protein PSYCIT7_08289 [Pseudomonas syringae Cit 7]
Length = 228
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAISALPRLRLRGLMAIPEPTDDPAAQNASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E A+A GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLHLPLDTLSMGMSHDLEAAVAQGATWVRIGTALFGARDY 225
>gi|37525148|ref|NP_928492.1| hypothetical protein plu1180 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784574|emb|CAE13474.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 231
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + I +A +R + ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 NIEQNLQDVRTHIAIAAQKCERAPEEITLLAVSKTKPVEDIEKAIAAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + F+ T+ R K A L+ + + L
Sbjct: 63 VEKIAYFANCNDLIWHFIGPLQSNKSRLVAENFNWCHTIDRLKIAQRLNEQRPEGMEPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI ++ + + + GLM IP + + +
Sbjct: 123 ILIQINISDERSKSGIQLDELSTLAAEMNKLPNVRLRGLMAIPAPEPDYAHQLAVFRRME 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 183 QAFLNLKTKYPQIDTLSMGMTDDMAAAINCGSTLVRIGTAIFGARQY 229
>gi|170691371|ref|ZP_02882536.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
gi|170143576|gb|EDT11739.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
Length = 232
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIALAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIEVLADLRSTLEWHFIGPLQSNKTRPVAEQFDWVHSVDRLKIAQRLSEQRPETLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V +QVN E KSG+ ++ +L + GLM IP + + + L
Sbjct: 123 NVCLQVNISGEASKSGVGVDEAVQVAKDIAALPRLRLRGLMAIPEPAGSIDDQRVPHRRL 182
Query: 178 SEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ +L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLVGEGLELDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|328541708|ref|YP_004301817.1| Alanine racemase domain protein [polymorphum gilvum SL003B-26A1]
gi|326411460|gb|ADZ68523.1| Alanine racemase domain protein [Polymorphum gilvum SL003B-26A1]
Length = 266
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 103/217 (47%), Positives = 132/217 (60%), Gaps = 1/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L +I + R SV+++AVSK ++IR L+ GQ +F EN++QEA K
Sbjct: 49 DRLTCVTAEIRAAEAEYGRAAGSVTVIAVSKTFSGEEIRPVLAAGQRVFGENRVQEAMAK 108
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W ++L IG LQSNK E V++FDVI TV REK A L EM +Q R LP +
Sbjct: 109 WPGLRADFPGIELHLIGPLQSNKAKEAVAIFDVIHTVDREKIARALKSEMDRQGRHLPCF 168
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+GI P QT FV CR + L+V GLMCIPP P PHF LL +IA
Sbjct: 169 VQVNTGEEAQKAGIAPAQTDAFVAFCRDEVGLDVAGLMCIPPVEEAPGPHFALLQKIAAR 228
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ DF +A+ GAT VR+GS IFG R
Sbjct: 229 NGLAQLSMGMSSDFPIAVGFGATHVRVGSAIFGSRDY 265
>gi|23502661|ref|NP_698788.1| hypothetical protein BR1808 [Brucella suis 1330]
gi|161619728|ref|YP_001593615.1| hypothetical protein BCAN_A1846 [Brucella canis ATCC 23365]
gi|163845385|ref|YP_001623040.1| hypothetical protein BSUIS_B1285 [Brucella suis ATCC 23445]
gi|254703574|ref|ZP_05165402.1| hypothetical protein Bsuib36_06554 [Brucella suis bv. 3 str. 686]
gi|260568879|ref|ZP_05839347.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261754207|ref|ZP_05997916.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
gi|23348670|gb|AAN30703.1| conserved hypothetical protein TIGR00044 [Brucella suis 1330]
gi|161336539|gb|ABX62844.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163676108|gb|ABY40218.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|260154263|gb|EEW89345.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261743960|gb|EEY31886.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
Length = 226
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 116/223 (52%), Positives = 151/223 (67%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNKV++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKVADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYS 223
>gi|91203601|emb|CAJ71254.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 243
Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ KQ I N+AI A + + ++LV +K VD +IR A+ G I ENK+QE
Sbjct: 1 MSIKENLENVKQNIANAAIKAGKKPEDITLVMATKTVDVDRIREAIKAGGNIIGENKIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KK+ K+ V+ FIG LQ+NKV + + +I +V R A L ++++ R L
Sbjct: 61 ALKKYQE-LKDEKVEWHFIGHLQTNKVKDALKFAHMIHSVDRLPLAEKLDHRLMQEVRSL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNT +E K GI P + + + LN+ GLM I + +
Sbjct: 120 DILVQVNTSHEESKYGIEPEKAISLIKQIAKYDTLNIRGLMTIGLFTKDEVKIRKCFKVL 179
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+++AI GA VRIG+ IFG R
Sbjct: 180 KALCDIIATEGIDRVQMDYLSMGMTNDYQIAIEEGANMVRIGTAIFGARNTP 231
>gi|225628362|ref|ZP_03786396.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|254700452|ref|ZP_05162280.1| hypothetical protein Bsuib55_06309 [Brucella suis bv. 5 str. 513]
gi|254708339|ref|ZP_05170167.1| hypothetical protein BpinM_15650 [Brucella pinnipedialis
M163/99/10]
gi|254708808|ref|ZP_05170619.1| hypothetical protein BpinB_00826 [Brucella pinnipedialis B2/94]
gi|254714650|ref|ZP_05176461.1| hypothetical protein BcetM6_15197 [Brucella ceti M644/93/1]
gi|254717548|ref|ZP_05179359.1| hypothetical protein BcetM_14326 [Brucella ceti M13/05/1]
gi|256030334|ref|ZP_05443948.1| hypothetical protein BpinM2_06746 [Brucella pinnipedialis
M292/94/1]
gi|256160505|ref|ZP_05458194.1| hypothetical protein BcetM4_16004 [Brucella ceti M490/95/1]
gi|256255711|ref|ZP_05461247.1| hypothetical protein BcetB_15833 [Brucella ceti B1/94]
gi|256370212|ref|YP_003107723.1| alanine racemase [Brucella microti CCM 4915]
gi|260168008|ref|ZP_05754819.1| alanine racemase [Brucella sp. F5/99]
gi|261219382|ref|ZP_05933663.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
gi|261222922|ref|ZP_05937203.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|261315839|ref|ZP_05955036.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261316301|ref|ZP_05955498.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261322444|ref|ZP_05961641.1| alanine racemase domain-containing protein [Brucella ceti
M644/93/1]
gi|261750953|ref|ZP_05994662.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|261757453|ref|ZP_06001162.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|265987368|ref|ZP_06099925.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|265998881|ref|ZP_06111438.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|294851047|ref|ZP_06791723.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
gi|225616208|gb|EEH13256.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|256000375|gb|ACU48774.1| alanine racemase [Brucella microti CCM 4915]
gi|260921506|gb|EEX88159.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|260924471|gb|EEX91039.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
gi|261295134|gb|EEX98630.1| alanine racemase domain-containing protein [Brucella ceti
M644/93/1]
gi|261295524|gb|EEX99020.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261304865|gb|EEY08362.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261737437|gb|EEY25433.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|261740706|gb|EEY28632.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|262553570|gb|EEZ09339.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|264659565|gb|EEZ29826.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|294821690|gb|EFG38686.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
Length = 226
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 115/223 (51%), Positives = 150/223 (67%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYS 223
>gi|170718483|ref|YP_001783697.1| alanine racemase [Haemophilus somnus 2336]
gi|168826612|gb|ACA31983.1| alanine racemase domain protein [Haemophilus somnus 2336]
Length = 244
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 11/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L ++I AKR +VSL+AVSK + I +A GQ F EN +QE
Sbjct: 15 MQIKNNLAKINRQISQYCEQAKRHSSTVSLLAVSKTKPVEDILIAYQAGQTAFGENYVQE 74
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ ++ FIG LQSNK + FD ++T+ REK A+ L+ + +
Sbjct: 75 GVEKIQYFIEQHIQLEWHFIGPLQSNKTKLVAENFDWMQTLDREKIATRLNEQRPHYKQP 134
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI P + + L + GLM IP N ++
Sbjct: 135 LNVLIQINISAENSKSGIQPQEMLILAKHIQNLPHLRLRGLMAIPEPTDNITAQEQAFNQ 194
Query: 180 ---IARECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +L LSMGM+ D AI G+T VRIG+ IFG+R
Sbjct: 195 MKYLFTQLQLAFPDEKIDTLSMGMSDDMASAIKCGSTMVRIGTAIFGKRN 244
>gi|17986525|ref|NP_539159.1| phosphate regulon sensor protein PHOR [Brucella melitensis bv. 1
str. 16M]
gi|225853252|ref|YP_002733485.1| hypothetical protein BMEA_A1858 [Brucella melitensis ATCC 23457]
gi|254694453|ref|ZP_05156281.1| hypothetical protein Babob3T_07292 [Brucella abortus bv. 3 str.
Tulya]
gi|256045404|ref|ZP_05448298.1| hypothetical protein Bmelb1R_12992 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256114372|ref|ZP_05455105.1| hypothetical protein Bmelb3E_16205 [Brucella melitensis bv. 3 str.
Ether]
gi|256263260|ref|ZP_05465792.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|260565704|ref|ZP_05836187.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|261214767|ref|ZP_05929048.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
str. Tulya]
gi|265991833|ref|ZP_06104390.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|265995672|ref|ZP_06108229.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|17982130|gb|AAL51423.1| phosphate regulon sensor protein phor [Brucella melitensis bv. 1
str. 16M]
gi|225641617|gb|ACO01531.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|260151077|gb|EEW86172.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|260916374|gb|EEX83235.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
str. Tulya]
gi|262766956|gb|EEZ12574.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|263002789|gb|EEZ15192.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|263093224|gb|EEZ17321.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|326409811|gb|ADZ66876.1| phosphate regulon sensor protein PHOR [Brucella melitensis M28]
gi|326539529|gb|ADZ87744.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 226
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 114/223 (51%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFD IETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYS 223
>gi|330961171|gb|EGH61431.1| hypothetical protein PMA4326_21764 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 228
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R S+ L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAADRDPASIGLLAVSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALAKQAELSDL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P D +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLSDLATAISALPRLKLRGLMAIPEPTDDPLEQTASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQAQLGLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|294506685|ref|YP_003570743.1| hypothetical protein SRM_00870 [Salinibacter ruber M8]
gi|294343013|emb|CBH23791.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 252
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +++I + A R D +++VAVSK + I G F EN+ ++ +
Sbjct: 20 VTERVESIRERIAQACGRAGRSPDEITVVAVSKTFPMQAIASGTGVGLEHFGENRARQLR 79
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + DV+ +G LQ NK I D + + + A L+ K R
Sbjct: 80 DKAKARPGAVEGGDVKWHMVGHLQRNKAKFIARHADWFDALDSPRLAEELNKRAAKNDRV 139
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
LP +QVN + QK G+ P++T +++ C Q L VEGLM + + +P+ F
Sbjct: 140 LPCLVQVNITGDDQKYGLAPSETHEYLDHCAQYDHLAVEGLMALGSFVDDPEDVRGEFQK 199
Query: 177 LSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + ++T+LS+GM+ DFE+AI G+T +R+G+ IFG R
Sbjct: 200 MRELFDTYDASGNPQVEMTELSIGMSNDFEVAIEEGSTMIRLGTSIFGPRDY 251
>gi|62290673|ref|YP_222466.1| hypothetical protein BruAb1_1788 [Brucella abortus bv. 1 str.
9-941]
gi|82700588|ref|YP_415162.1| hypothetical protein BAB1_1816 [Brucella melitensis biovar Abortus
2308]
gi|189024885|ref|YP_001935653.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
gi|237816174|ref|ZP_04595169.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|254689961|ref|ZP_05153215.1| hypothetical protein Babob68_07289 [Brucella abortus bv. 6 str.
870]
gi|254698112|ref|ZP_05159940.1| hypothetical protein Babob28_10483 [Brucella abortus bv. 2 str.
86/8/59]
gi|254730996|ref|ZP_05189574.1| hypothetical protein Babob42_07322 [Brucella abortus bv. 4 str.
292]
gi|256258216|ref|ZP_05463752.1| hypothetical protein Babob9C_12896 [Brucella abortus bv. 9 str.
C68]
gi|260547091|ref|ZP_05822829.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260755496|ref|ZP_05867844.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260758719|ref|ZP_05871067.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260762553|ref|ZP_05874890.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260884517|ref|ZP_05896131.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|297249065|ref|ZP_06932773.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
B3196]
gi|62196805|gb|AAX75105.1| conserved hypothetical protein TIGR00044 [Brucella abortus bv. 1
str. 9-941]
gi|82616689|emb|CAJ11772.1| Protein of unknown function UPF0001 [Brucella melitensis biovar
Abortus 2308]
gi|189020457|gb|ACD73179.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
gi|237788636|gb|EEP62849.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260095456|gb|EEW79334.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260669037|gb|EEX55977.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260672979|gb|EEX59800.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260675604|gb|EEX62425.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260874045|gb|EEX81114.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|297174198|gb|EFH33555.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
B3196]
Length = 226
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 114/223 (51%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFD IETV REK A+ L+ E+ KQ +
Sbjct: 61 EARGKWPALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYS 223
>gi|188580915|ref|YP_001924360.1| alanine racemase domain protein [Methylobacterium populi BJ001]
gi|179344413|gb|ACB79825.1| alanine racemase domain protein [Methylobacterium populi BJ001]
Length = 244
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 97/218 (44%), Positives = 130/218 (59%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I +A +R V LVAVSK V ++ I AL+ GQ +F EN +QE+
Sbjct: 23 DVAAGLAEVRAQIRRAAEDNERDPGGVHLVAVSKTVPAEGILPALTAGQRLFGENYVQES 82
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 83 KAKWPALKARFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 142
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 143 KLLIQVNTGDEAQKAGVAPDQVDVLLSECRETHGLAIHGLMCIPPAEDPPSPHFALLARI 202
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L+ LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 203 AERHGLSMLSMGMSADFPAAIQMGATHVRVGTAIFGRR 240
>gi|213971473|ref|ZP_03399585.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
tomato T1]
gi|301383500|ref|ZP_07231918.1| hypothetical protein PsyrptM_12746 [Pseudomonas syringae pv. tomato
Max13]
gi|302062924|ref|ZP_07254465.1| hypothetical protein PsyrptK_23299 [Pseudomonas syringae pv. tomato
K40]
gi|302134692|ref|ZP_07260682.1| hypothetical protein PsyrptN_25079 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923755|gb|EEB57338.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
tomato T1]
Length = 228
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 107/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELADL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|210622347|ref|ZP_03293116.1| hypothetical protein CLOHIR_01064 [Clostridium hiranonis DSM 13275]
gi|210154335|gb|EEA85341.1| hypothetical protein CLOHIR_01064 [Clostridium hiranonis DSM 13275]
Length = 233
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ +++I + A A R D + L+AV+K VD K+ A++ + ENK QE
Sbjct: 3 NIRENIESIRKRIADVAKRAGRDADDIKLIAVTKTVDVDKVEEAIAADALDAGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ ++ IGSLQ+NKV I+ +I ++ RE A + K R +
Sbjct: 63 ARKYE--VLGDKIRWHQIGSLQTNKVKYIIDKVCMIHSLDREGLAEEIDKRANKIGRVID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
+QVN E K G+ + + FV L + + ++GLM + P + F L
Sbjct: 121 CLVQVNISGEESKHGMSREEVEPFVRLVAEKYPNIKIKGLMTMAPFDAERDEIRKVFRDL 180
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E++ E + +LSMGMT DFE+A+ GAT VR+G+ IFG+R
Sbjct: 181 KELSDEINNMNIGNVEMNELSMGMTNDFEIAVEEGATMVRVGTAIFGKRNYN 232
>gi|157148501|ref|YP_001455820.1| hypothetical protein CKO_04327 [Citrobacter koseri ATCC BAA-895]
gi|157085706|gb|ABV15384.1| hypothetical protein CKO_04327 [Citrobacter koseri ATCC BAA-895]
Length = 234
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIAEAIAVGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E +K ++ +Q FIG LQSNK + FD T+ R + A+ LS +
Sbjct: 61 EGVEKIRHFKESGVEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPTGL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + + GLM IP + F +
Sbjct: 121 PPLNVLIQINISDENSKSGIPLTELDALAASVVELPGIRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 231
>gi|37681058|ref|NP_935667.1| TIM-barrel fold family protein [Vibrio vulnificus YJ016]
gi|37199808|dbj|BAC95638.1| predicted enzyme with a TIM-barrel fold [Vibrio vulnificus YJ016]
Length = 236
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I +S R +DSV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E ++ FIG +QSNK + F + T+ R+K A L+ + +
Sbjct: 63 VEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQVNT E KSG+ + L L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHVSQLAAFQ 182
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ R + LSMGM+ D + AI SG+T VRIG+ IFG R
Sbjct: 183 PLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYS 233
>gi|220936080|ref|YP_002514979.1| alanine racemase domain protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219997390|gb|ACL73992.1| alanine racemase domain protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 236
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +G++L + +I +A+ R +++L+AVSK ++ +R ++CGQ F EN +Q
Sbjct: 1 MSTIGDRLDTVRTRIHEAALRHGRDPATITLLAVSKTQPAEALREVMACGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L + FIG LQSNK I L + ++ R+K A LS + ++
Sbjct: 61 ELADKADALADLR-PEWHFIGPLQSNKTRLIAGLAHWVHSIERDKIARRLSEQRPGEAVD 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E KSG+ P + +L + GLM IP + +
Sbjct: 120 LQVCLQVNLDAEASKSGLAPEALPALAEVVAGLPRLRLRGLMAIPAPSEDFATQRRAFAR 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ R +L LSMGM+ D E AIA GAT VR+G+ IFG R
Sbjct: 180 LREMQEDLIRRGHQLDTLSMGMSGDLEAAIAEGATIVRVGTAIFGSR 226
>gi|325139253|gb|EGC61798.1| hypothetical protein TIGR00044 [Neisseria meningitidis ES14902]
Length = 228
Score = 178 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AIA GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIACGATHVRIGSAIFGKR 227
>gi|154244235|ref|YP_001415193.1| alanine racemase domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154158320|gb|ABS65536.1| alanine racemase domain protein [Xanthobacter autotrophicus Py2]
Length = 232
Score = 178 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 99/213 (46%), Positives = 133/213 (62%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++ +S A R +V+LVAVSK + +I L+ GQ +F EN++QEA+ KW
Sbjct: 14 LHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVFGENRVQEAQGKWP 73
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
V+L IG LQSNK E V LFDVI TV R K A+ L+ EM +Q R +++Q
Sbjct: 74 ALRADYQGVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGEMARQGRNPRLFVQ 133
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ CR+++ L + GLMCIPPA P PHF LL++IA
Sbjct: 134 VNTGAEPQKAGVLPETADAFIAECRERHGLKIFGLMCIPPATDVPDPHFALLAKIAARNG 193
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 194 ISGLSMGMSADFPAAIRQGATHVRVGSAIFGHR 226
>gi|301155770|emb|CBW15238.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
Length = 235
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ Q+I+ S LA RP+ +V+L+AVSK ++ I A GQ F EN +QE
Sbjct: 2 MTIQQALETIHQQIQTSTQLAHRPESAVTLLAVSKTKPNEAILEAYHAGQKAFGENYVQE 61
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + ++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 62 GVDKIQYFEAQNIQLEWHFIGPLQSNKTRLVAEHFDWMQTLERAKIADRLNEQRPTNKAP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P++ + L + GLM IP N F
Sbjct: 122 LNVLIQINISDEASKSGIQPSEMIELAKHIENLPHLRLRGLMAIPAPTDNIAEQEAAFNQ 181
Query: 177 LSEIARECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + K+ LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 182 MEQLFEQLKIAFPHQQIDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGARDYS 233
>gi|15605814|ref|NP_213191.1| hypothetical protein aq_274 [Aquifex aeolicus VF5]
gi|6226352|sp|O66631|Y274_AQUAE RecName: Full=UPF0001 protein aq_274
gi|2982978|gb|AAC06592.1| hypothetical protein aq_274 [Aquifex aeolicus VF5]
Length = 228
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++I+ + A R ++ L+ SK V + IR +CG ++ EN++QE
Sbjct: 1 MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ L+ D++ FIG LQ+NKV ++ +I ++ R+ A + K +
Sbjct: 61 FLKKYEALKDL-DLEWHFIGRLQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I+VN G E K G+ P K+ + + V GLM IPP + NP +P+F L
Sbjct: 120 DVLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLMTIPPYLENPEDVRPYFRKL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ E + L LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 RELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228
>gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007 [Janthinobacterium sp. Marseille]
gi|151281154|gb|ABR89564.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 267
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 102/225 (45%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R V L+ VSK +R+A + G ENK+QEA KW
Sbjct: 26 NLTAVQLRIAAACRCVGRDPAEVRLLPVSKTKPEASLRLAYAAGCRTLGENKVQEAHHKW 85
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+ IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 86 EAMQDLTDLHWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQIEGRSLDVFVQ 145
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P FV L V GLM + + F+LL +
Sbjct: 146 VNTSGEASKYGLAPADVAAFVQALPSYSALRVRGLMTLALFSSEEERVRQCFFLLRTLRE 205
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 206 QLRQSAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 250
>gi|323486921|ref|ZP_08092237.1| hypothetical protein HMPREF9474_03988 [Clostridium symbiosum
WAL-14163]
gi|323399784|gb|EGA92166.1| hypothetical protein HMPREF9474_03988 [Clostridium symbiosum
WAL-14163]
Length = 234
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K+ I ++ + R V+L+AVSK + +R A G F ENK+QE
Sbjct: 2 IRENLNDVKENIVSACRASNRQPQDVTLIAVSKTKPVELLREAYDAGVRDFGENKVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D++ IG LQ NKV +++ +I +V A + E K++ + +
Sbjct: 62 EKAPA--LPDDIRWHMIGHLQKNKVRQVIDKTVLIHSVDTVALAEQIEKEAAKKNIDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN G E K G + + V + + ++++GLM I P + N + + + ++
Sbjct: 120 LLEVNIGEEESKYGFRAGEVLEAVTIISKFSHVHIKGLMTIAPFVENSEENRDIFLKLYQ 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+ AI GAT +R+G+GIFG R
Sbjct: 180 LNVDIKSKNIDNVNMAVLSMGMTGDYMTAIEEGATMIRVGTGIFGAR 226
>gi|83816855|ref|YP_444832.1| hypothetical protein SRU_0694 [Salinibacter ruber DSM 13855]
gi|83758249|gb|ABC46362.1| conserved hypothetical protein TIGR00044 [Salinibacter ruber DSM
13855]
Length = 233
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 16/234 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +++ +++I + A R D +++VAVSK + I G F EN+ ++
Sbjct: 1 MT--ERVESIRERIAQACGRAGRSPDEITVVAVSKTFPMQAIASGTGVGLEHFGENRARQ 58
Query: 61 AKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ K + DV+ +G LQ NK I D + + + A L+ K
Sbjct: 59 LRDKAKARPGAVEGGDVKWHMVGHLQRNKAKFIARHADWFDALDSPRLAEELNKRAAKND 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HF 174
R LP +QVN + QK G+ P++T +++ C Q L VEGLM + + +P+ F
Sbjct: 119 RVLPCLVQVNITGDDQKYGLAPSETHEYLDHCAQYDHLAVEGLMALGSFVDDPEDVRGEF 178
Query: 175 YLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + ++T+LS+GM+ DFE+AI G+T +R+G+ IFG R
Sbjct: 179 QKMRELFDTYDASGNPQVEMTELSIGMSNDFEVAIEEGSTMIRLGTSIFGPRDY 232
>gi|85704099|ref|ZP_01035202.1| alanine racemase domain protein [Roseovarius sp. 217]
gi|85671419|gb|EAQ26277.1| alanine racemase domain protein [Roseovarius sp. 217]
Length = 217
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +++ + + A R + V L+AVSK+ +++ L G +F EN++QEA +W
Sbjct: 3 LSEIKARMDKACVAAGRAPEDVDLIAVSKVQPEERVAAVLDQGHRVFGENRVQEAAGRWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ + + L IG LQSNK + + +F I +V R K A ++ + R +++Q
Sbjct: 63 AFQERYAGIVLHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQAIARLAQEMGRCPDLFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L V+GLMCIPP P HF LL+++A
Sbjct: 123 VNTGAEPQKAGVLPEAVDGFVAECRA-LDLPVKGLMCIPPVEEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ LSMGM+ DFE AIA GAT +R+GS IFG+R
Sbjct: 182 LSGLSMGMSSDFESAIAQGATHIRVGSAIFGDRDY 216
>gi|163851005|ref|YP_001639048.1| alanine racemase domain-containing protein [Methylobacterium
extorquens PA1]
gi|163662610|gb|ABY29977.1| alanine racemase domain protein [Methylobacterium extorquens PA1]
Length = 247
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 129/221 (58%), Gaps = 1/221 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 26 DVAAGLAEVRTSIRRAAEDNERDPASVHLVAVSKTVPAEGILPALESGQRIFGENYVQES 85
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 86 KAKWPALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 145
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 146 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARI 205
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L LSMGM+ DF AI GA+ VR+G+ IFG R +
Sbjct: 206 AERHGLPILSMGMSADFPAAIQMGASHVRVGTAIFGRRTKR 246
>gi|110677463|ref|YP_680470.1| hypothetical protein RD1_0046 [Roseobacter denitrificans OCh 114]
gi|109453579|gb|ABG29784.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 218
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 91/219 (41%), Positives = 122/219 (55%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + Q+IE + A R + SV L+AVSK+ ++++ L G F EN++QE
Sbjct: 2 MSLSD----ISQRIEKAVAQAGRDRGSVKLIAVSKVQPNERVEAVLKEGHRCFGENRVQE 57
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R + D V L IG LQ+NK + LF I T+ R K A + +
Sbjct: 58 AAGKWPAFRDDHDGVDLHLIGPLQTNKARQAFDLFQSIHTLDRPKLAKTCARLAQEIGHC 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P+ F+ CR L V GLMCIPP HF LL++
Sbjct: 118 PELFVQVNTGEEPQKAGVAPSDADAFIAECRA-LDLPVRGLMCIPPIDEEASLHFALLAK 176
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AI+ GAT +R+GS IFG R
Sbjct: 177 IAERNGLAGLSMGMSDDFEKAISFGATHIRVGSAIFGAR 215
>gi|326203530|ref|ZP_08193394.1| alanine racemase domain protein [Clostridium papyrosolvens DSM
2782]
gi|325986350|gb|EGD47182.1| alanine racemase domain protein [Clostridium papyrosolvens DSM
2782]
Length = 235
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 108/231 (46%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +I+ +A + R + + L+AV+K V+ +IR G F EN++QE
Sbjct: 5 TIKQNLDDIYTRIKAAAEKSGRKAEDIKLIAVTKTVEVDRIRNVSEYGVPDFGENRVQEL 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + IG LQ+NKV I+ +I +V + A + K + +
Sbjct: 65 LEKYDKFDEA--TKWHLIGHLQTNKVKYIIDKVHMIHSVDSFELAKEIDNRAGKTGKKMN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E K GI P + ++V + L + G+M I P N + + +
Sbjct: 123 ILLQVNVSGEETKFGIRPEEVNEYVEYISRLKNLLLRGMMTIAPFADNTQEIRPIFKNLY 182
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE+AI GA VRIG+GIFG+R
Sbjct: 183 DIFIDIKNKRIDNVSMDYLSMGMSNDFEVAIEEGANIVRIGTGIFGKRNYP 233
>gi|90412040|ref|ZP_01220047.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
3TCK]
gi|90327018|gb|EAS43397.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
3TCK]
Length = 233
Score = 178 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I ++ R DSV L+AVSK +I A++ GQ F EN +QE
Sbjct: 3 SIKQNIEQVISQITSATEKCGRTTDSVQLLAVSKTKPIAEIDDAIAAGQRAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK I FD + +V R KTA L+ +
Sbjct: 63 VEKVQHFANHAQTEEIFWHFIGPIQSNKTRPIAEHFDWVHSVDRIKTARRLNEQRPSSMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +QVNT E KSG+ N L + GLM IP + +
Sbjct: 123 PLNILLQVNTSGEESKSGVNINDLAALADEIATMPNLVLRGLMSIPQKADSYDSQYAAFK 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A + ++ LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 LLADAQQQLHIKYPQIDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGARDY 232
>gi|261868167|ref|YP_003256089.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413499|gb|ACX82870.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 231
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ+ +QKI + +V+L+AVSK + I A GQ F EN +QE
Sbjct: 3 NIRRNLQLVQQKITQICQMVGSSPSAVTLLAVSKTKPVEDILTAYEAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD ++T+ R K A L+ + L
Sbjct: 63 VEKIQFCQQHNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRSPHKAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQVN E KSGI P + D L + GLM IP + FY +
Sbjct: 123 NVLIQVNISNEASKSGIQPCEILDLAKHLENLPHLCLRGLMAIPEPTNDVTRQEQVFYQM 182
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + + LSMGMT D ++AI G+T VR+G+ IFG+R
Sbjct: 183 RVLFEQLQQALPNAQIDTLSMGMTDDMQMAIKCGSTMVRVGTAIFGKR 230
>gi|332162811|ref|YP_004299388.1| hypothetical protein YE105_C3191 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604348|emb|CBY25846.1| hypothetical protein YggS, proline synthase co-transcribed
bacterial homolog PROSC [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667041|gb|ADZ43685.1| hypothetical protein YE105_C3191 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859001|emb|CBX69359.1| UPF0001 protein yggS [Yersinia enterocolitica W22703]
Length = 231
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 105/228 (46%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ + KI +A R + V+L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIEQNLQDVRAKIAAAARNCGRSPEEVTLLAVSKTKSVSAIEEAIAAGQYAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 63 VDKIHYFAESAHASQLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 123 ALNILIQVNISDEQSKSGITLAELPALAASISELPHLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKASYPQMDTLSMGMTDDMVAAIAAGSTLVRIGTAIFGSR 230
>gi|27364896|ref|NP_760424.1| hypothetical protein VV1_1525 [Vibrio vulnificus CMCP6]
gi|27361041|gb|AAO09951.1| protein of unknown function [Vibrio vulnificus CMCP6]
Length = 236
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I +S R +DSV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEG 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E ++ FIG +QSNK + F + T+ R+K A L+ + +
Sbjct: 63 VEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + L L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHASQLAAFQ 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LSMGM+ D + AI SG+T VRIG+ IFG R
Sbjct: 183 PLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYS 233
>gi|293391891|ref|ZP_06636225.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952425|gb|EFE02544.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 231
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ+ +QKI + +V+L+AVSK + I A GQ F EN +QE
Sbjct: 3 NIRRNLQLVQQKITQICQMVGSSPSAVTLLAVSKTKPVEDILTAYEAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD ++ + R K A L+ + L
Sbjct: 63 VEKIQFCQQHNINLEWHFIGPLQSNKTRLVAEYFDWMQALDRAKIADRLNEQRSPHKAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQVN E KSGI P + D L + GLM IP + FY +
Sbjct: 123 NVLIQVNISNEASKSGIQPCEILDLAKHLENLPHLCLRGLMAIPEPTNDVTRQEQVFYQM 182
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + + LSMGMT D ++AI G+T VR+G+ IFG+R
Sbjct: 183 RVLFEQLQQALPNAQIDTLSMGMTDDMQMAIKCGSTMVRVGTAIFGKR 230
>gi|187478097|ref|YP_786121.1| hypothetical protein BAV1600 [Bordetella avium 197N]
gi|115422683|emb|CAJ49210.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 275
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I+ + R V L+ VSK +R+A + G +F ENK+QEA
Sbjct: 28 DFRHNLAAVQARIDAACARVGRKPSEVRLLPVSKTKPEASLRLAYAAGCRMFGENKVQEA 87
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW ++ D+ IG LQ+NK + + + + A L + + R L
Sbjct: 88 YGKWEGMQDLPDLGWSVIGHLQTNKAKLVARFAAEFQALDSLRLAEALERRLQAEGRALD 147
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V++QVNT E K G+ P + F+ L V GLM + + F L
Sbjct: 148 VFVQVNTSGEPSKYGLAPAEVAGFLRQLSAFSALRVRGLMTLALFSAEGERVRQCFMQLR 207
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 208 ALRERLRQQAPGAVSLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARATP 258
>gi|163869197|ref|YP_001610449.1| hypothetical protein Btr_2479 [Bartonella tribocorum CIP 105476]
gi|161018896|emb|CAK02454.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 235
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 101/216 (46%), Positives = 142/216 (65%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L ++ I +RP++ V L+AVSK V + IR L GQ +FAEN++QEA +K
Sbjct: 19 EALHNLQKDIAALCQELQRPREEVELIAVSKTVSIEDIRPLLQAGQSLFAENRVQEAAQK 78
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W+ ++ +++L IG LQSNK +E V +FDVI+TV REK A +L+ EM KQ R +P Y
Sbjct: 79 WLGLRQQFENIKLHLIGPLQSNKAAEAVKIFDVIQTVDREKIAKILAEEMQKQKRHIPCY 138
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSGI P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 139 VQVNIGLEPQKSGIAPQEVIPFVSQCKNNYGLDIIGLMAIPPVDENPGPYFALLAKLAKQ 198
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L KLSMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 199 AGLPKLSMGMSNDFKTALQFGSNVLRIGSALFGKRP 234
>gi|83949878|ref|ZP_00958611.1| alanine racemase domain protein [Roseovarius nubinhibens ISM]
gi|83837777|gb|EAP77073.1| alanine racemase domain protein [Roseovarius nubinhibens ISM]
Length = 216
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 93/221 (42%), Positives = 125/221 (56%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + I + A R SVSL+AVSK ++ L G +F EN++QE
Sbjct: 1 MSLSE----ITEAIAKAEKYAGRAPGSVSLIAVSKKQPDARVEEVLDEGHRVFGENRVQE 56
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++D ++L IG LQ+NKV + + L I +V R K A ++ ++
Sbjct: 57 AAGKWPGFREKYDGIELHIIGPLQTNKVRQAMELAQAIHSVDRPKLAQTIARIAQEEGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P F+ CR L + GLMCIPP P HF LL++
Sbjct: 117 PDLFIQVNTGEEEQKAGILPKDADAFITECRG-LDLPLRGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 176 IAARNGLDGLSMGMSGDFERAIALGATHVRVGSAIFGDRAY 216
>gi|319780906|ref|YP_004140382.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166794|gb|ADV10332.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 220
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 109/211 (51%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP- 67
K KI + A R +V+LVAVSK D+ I + GQ +F EN++QEA+ KW
Sbjct: 10 AVKAKIAAAEREAGREAGAVTLVAVSKTFDAADIGPVIEAGQRVFGENRVQEAQAKWPDL 69
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ KQ R +Y+QVN
Sbjct: 70 KDAFPDIELHLIGPLQSNKAREAVALFDVIETVDREKIAAELAKEIAKQGRAPKLYVQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+GI P FV CR+ + L +EGLMCIPPA NP PHF LL ++++E +
Sbjct: 130 TGSEPQKAGIEPRDAVAFVARCREVHGLAIEGLMCIPPADENPGPHFALLEKLSKEANVA 189
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 190 KLSMGMSGDYETAIAFGATSVRVGSAIFGTR 220
>gi|149928122|ref|ZP_01916369.1| hypothetical protein LMED105_15274 [Limnobacter sp. MED105]
gi|149823208|gb|EDM82445.1| hypothetical protein LMED105_15274 [Limnobacter sp. MED105]
Length = 237
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 79/236 (33%), Positives = 109/236 (46%), Gaps = 15/236 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS +L + +IEN+ A RP +V L+AVSK I +CGQ F EN LQE
Sbjct: 1 MSRATQLADIQSRIENACSKAGRPGSAVKLLAVSKTFPLSDILEFYNCGQTAFGENYLQE 60
Query: 61 AKKKWIPLRKEWDV-------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
A K L + + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 ALDKITQLADHPNAQTINTNLEWHFIGPIQSNKTKPIAENFSWVHSVDRLKIAQRLSDQR 120
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+ L V +Q+NT E KSG+ QT D + + + + GLM IP N
Sbjct: 121 PDKLGPLNVLVQINTSGEDSKSGVNAEQTADLCLQIQSLKNIALRGLMTIPSNTDNVDQL 180
Query: 174 FYLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + ++ LSMGM+ D ELAI G++ VR+GS +FG R
Sbjct: 181 KAEFLKCKLIFDSLNSKGLRMDTLSMGMSADLELAIECGSSCVRVGSALFGARNYS 236
>gi|254476253|ref|ZP_05089639.1| conserved hypothetical protein TIGR00044 [Ruegeria sp. R11]
gi|214030496|gb|EEB71331.1| conserved hypothetical protein TIGR00044 [Ruegeria sp. R11]
Length = 218
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 95/221 (42%), Positives = 122/221 (55%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ + +I + A R S L+AVSK+ ++++ L+ G F EN++QE
Sbjct: 1 MS----LQDIQSRIHTAEEKAGRAVGSTQLIAVSKVQPNERVESVLNEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW +D L IG LQ+NK + + LF I TV R K A ++ +
Sbjct: 57 AAGKWPDFATRFDGLDLHLIGPLQTNKARQAMELFQNIHTVDRPKLAKTIARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI P FV CR L +EGLMCIPPA P HF LL +
Sbjct: 117 PKLFIQVNTGEEPQKAGIAPRDADAFVKECRDM-DLVIEGLMCIPPAEEEPSLHFSLLRK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA LT LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 176 IAERNGLTGLSMGMSGDFESAVALGATHVRVGSAIFGARAY 216
>gi|317401303|gb|EFV81943.1| hypothetical protein HMPREF0005_01116 [Achromobacter xylosoxidans
C54]
Length = 239
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/233 (32%), Positives = 114/233 (48%), Gaps = 15/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L +Q+I + A R DSV+L+ VSK + IR A++ G F ENK QE
Sbjct: 7 MAI--RLAAIRQRIAQACERAGRAPDSVTLLPVSKTFEVDAIREAMALGLARFGENKTQE 64
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K +Q IG LQ+NK + ++++ R A L ++ + R L
Sbjct: 65 LRQKAAA-LAGQGLQWVLIGHLQTNKAKDAARDATELQSLDRIDLAEALHRRLVLEGRTL 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
V +QV T E K G+ P+ + + + L V GLM + P G + F
Sbjct: 124 DVLVQVKTSSEPSKYGMAPSDVSAFLRRIVAEFPTLRVRGLMTMAVNSPDPGEVRACFRS 183
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ + + L +LSMGM+ DFELAI G+T VRIG+ IFG R
Sbjct: 184 LRELRDQLRHEAIEGVSLDRLSMGMSGDFELAIEEGSTEVRIGTAIFGARSYP 236
>gi|83594963|ref|YP_428715.1| hypothetical protein Rru_A3634 [Rhodospirillum rubrum ATCC 11170]
gi|83577877|gb|ABC24428.1| Protein of unknown function UPF0001 [Rhodospirillum rubrum ATCC
11170]
Length = 242
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 101/219 (46%), Positives = 136/219 (62%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + L+ + I ++ R V+LVAVSK +++R AL G +F EN++QE
Sbjct: 14 LDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALRAGHRLFGENRVQE 73
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW + + D+ L IG LQ+NKV E V+LFD I++V R + A L+ EM Q R
Sbjct: 74 AQGKWPAFKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLARALAEEMDHQGRR 133
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
LPV IQVNTG E QK+GI+P F+ CR+ L+V GLMCIPP P PHF LL E
Sbjct: 134 LPVLIQVNTGEEPQKAGILPRDADGFLRECREDLGLDVRGLMCIPPVDDEPSPHFALLRE 193
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IAR L LSMGM+ D+ +A+A GAT VR+G+ IFG+R
Sbjct: 194 IARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDR 232
>gi|291618773|ref|YP_003521515.1| YggS [Pantoea ananatis LMG 20103]
gi|291153803|gb|ADD78387.1| YggS [Pantoea ananatis LMG 20103]
gi|327395106|dbj|BAK12528.1| hypothetical UPF0001 protein YggS [Pantoea ananatis AJ13355]
Length = 235
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQHNLQQVRQRIAAAATRCGRSPEEITLLAVSKTKPASAVEEAAAAGQIDFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + FIG LQSNK + F TV R+K A L+ + + L
Sbjct: 63 VEKIQSLTSHPALTWHFIGPLQSNKSRLVAEHFAWCHTVDRQKIAQRLNDQRPEHLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM +L + GLM IP + + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEAVAGLAQDILTMPRLRLRGLMAIPAPEEDYQRQLAVCQQMA 182
Query: 182 REC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 DAFDQLKQQYSDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 229
>gi|119470546|ref|ZP_01613249.1| hypothetical protein ATW7_12046 [Alteromonadales bacterium TW-7]
gi|119446247|gb|EAW27524.1| hypothetical protein ATW7_12046 [Alteromonadales bacterium TW-7]
Length = 237
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I N+A R KD ++L+AVSK S I A + GQ F E+ +QEA
Sbjct: 12 TIAERLTCAYARISNAAKNTHRSKDEITLLAVSKTKPSDDIVAAYNYGQRQFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +QSNK + + FD +++V R K A L+ + L
Sbjct: 72 VDKIAQLHTYSDIIWHFIGPIQSNKSALVAENFDWVQSVDRIKIAKRLNAQRPTSKPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG PN + Q QL + GLM IP +P ++
Sbjct: 132 VLIQVNISAEEAKSGCHPNDIANLADFISQCDQLRLRGLMSIPAKSDDPTTQTQYFEQLQ 191
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A+ +L LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 192 TCFDKLKAQYPQLDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|294675817|ref|YP_003576432.1| alanine racemase domain-containing protein [Rhodobacter capsulatus
SB 1003]
gi|294474637|gb|ADE84025.1| alanine racemase domain protein [Rhodobacter capsulatus SB 1003]
Length = 220
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 90/215 (41%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A R + +V L+AVSK+ +++ L GQ +F EN +QEA KW
Sbjct: 3 LQEIQTRIAKATRAAGRAEGAVRLIAVSKVQPPERVLAVLDQGQRLFGENYVQEAAGKWP 62
Query: 67 PLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + V + IG LQ+NK + V LF+ I T+ R A L+ + +++Q
Sbjct: 63 DWRAEFPGVAVHMIGPLQTNKAKQAVELFEAIHTLDRPSLAVKLASLAQARGASPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV R+ L V GLMCIPP +P PHF +L+ +A
Sbjct: 123 VNTGSEPQKAGVLPEALDAFVAEARR-LDLPVVGLMCIPPEAEDPAPHFAMLAGMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 182 LTGLSMGMSSDFEAAIAAGATHVRVGSAIFGARDY 216
>gi|325141275|gb|EGC63773.1| hypothetical protein TIGR00044 [Neisseria meningitidis CU385]
Length = 228
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|15644477|ref|NP_229529.1| hypothetical protein TM1731 [Thermotoga maritima MSB8]
gi|4982308|gb|AAD36796.1|AE001812_6 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 229
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ +++N+A+ A R V LV SK +++ + G F EN+ Q+
Sbjct: 1 MGLKENLERVLNRMKNAALRANRDPSEVRLVVASKYASVQQMEELVFLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK K + FIG +Q+NKV IV ++I +V RE+ + K +
Sbjct: 61 LVKK-SEYFKGKPIIWHFIGRIQTNKVKYIVPRCELIHSVWREEELKEIEKRAEKLGKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LL 177
+ ++VN E K+G++ + + F+ LC++ + V G M + P +G+P+ + L
Sbjct: 120 KILLEVNVFKEETKAGLLVEEVEGFLKLCQEFPHVEVLGFMTMAPYVGDPEEVRWGFRTL 179
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RELRDELASRFNGNVKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|30248969|ref|NP_841039.1| hypothetical protein NE0966 [Nitrosomonas europaea ATCC 19718]
gi|30138586|emb|CAD84877.1| Uncharacterized pyridoxal-5'-phosphate dependent enzyme family
UPF0001 [Nitrosomonas europaea ATCC 19718]
Length = 238
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 114/227 (50%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++LQ K +I +A A R +SV L+A SK K+R A GQ +F EN LQE
Sbjct: 3 TIASRLQNVKNRIIEAAKKAGRDPESVQLLAASKTNTPDKLREAWEAGQTVFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK I F + + REK A+ LS + L
Sbjct: 63 LVKIRALSDL-PIEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN EI KSG+ P + + ++ +L + G+M +P + F ++
Sbjct: 122 VCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMMR 181
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 182 EVYEQLQQQGFNLDTLSMGMSEDLENAIAEGATMVRIGTAIFGPRRY 228
>gi|315127644|ref|YP_004069647.1| PLP-binding domain-containing protein [Pseudoalteromonas sp.
SM9913]
gi|315016158|gb|ADT69496.1| PLP-binding domain-containing protein [Pseudoalteromonas sp.
SM9913]
Length = 237
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I +A A+R + ++L+AVSK + I A GQ F E+ +QEA
Sbjct: 12 TIAERLTSAYARIAEAAHKAQRNSNDITLLAVSKTKPATDIMAAYEQGQRQFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +QSNK + + + F +++V R K A L+ + + L
Sbjct: 72 VDKIAQLDTFSDIVWHFIGPIQSNKSALVAANFAWVQSVDRLKIAKRLNSQRPETMPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG PN+ + Q L + GLM IP + ++
Sbjct: 132 VLIQVNISEEEAKSGCHPNEITELAQYIDQCAHLQLRGLMAIPAKSDDTNTQIQYFEQLQ 191
Query: 181 --ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 192 TCFDKLQTQYPHIDTLSMGMSNDVEAAIAAGSTMVRIGTDIFGTR 236
>gi|325145486|gb|EGC67760.1| hypothetical protein TIGR00044 [Neisseria meningitidis M01-240013]
Length = 228
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|254671716|emb|CBA09509.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325197354|gb|ADY92810.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
G2136]
Length = 228
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|229593134|ref|YP_002875253.1| putative recemase [Pseudomonas fluorescens SBW25]
gi|229365000|emb|CAY53143.1| putative recemase [Pseudomonas fluorescens SBW25]
Length = 228
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 104/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + Q+I +A +R S+ L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIADNIGQVSQRIRAAADAVQRDASSIHLLAVSKTKPAPAVREAYAAGMRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQAELTDL-PLSWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPADLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L + IQVN E KSG P D +L + GLM IP + F
Sbjct: 120 LNICIQVNVSGEASKSGCTPADLPDLANAISALPRLKLRGLMAIPEPTEDRAAQDAAFAA 179
Query: 177 LSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRDLQNSLNLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDY 225
>gi|167745614|ref|ZP_02417741.1| hypothetical protein ANACAC_00306 [Anaerostipes caccae DSM 14662]
gi|317472789|ref|ZP_07932100.1| alanine racemase domain-containing protein [Anaerostipes sp.
3_2_56FAA]
gi|167654926|gb|EDR99055.1| hypothetical protein ANACAC_00306 [Anaerostipes caccae DSM 14662]
gi|316899708|gb|EFV21711.1| alanine racemase domain-containing protein [Anaerostipes sp.
3_2_56FAA]
Length = 230
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ ++ K+ ++ + A R V+++AVSK I + CG + F ENK+QE
Sbjct: 2 LIDQYKLVKENVKAACEKAGRDPKEVTVIAVSKTKPLSMIEELMDCGVMDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ ++ V+ IG Q+NKV IV ++ +V K A +S E +K +PV
Sbjct: 62 KKYEEIKSP--VRWHMIGHFQTNKVKYIVDKVALVHSVDSVKLARQISKEALKHKIQVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN E KSG M + + + + V+GLM I P + NP+ + +
Sbjct: 120 LIQVNLAREETKSGFMEEELFGALEEISRLPGVLVQGLMQIAPFVENPENNRVYFRRMRQ 179
Query: 181 ---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+++A+ G+T VR+G+GIFGER
Sbjct: 180 LFVDIKEKNFDNIAMNILSMGMTNDYQVAVEEGSTMVRVGTGIFGERDYN 229
>gi|94311869|ref|YP_585079.1| hypothetical protein Rmet_2937 [Cupriavidus metallidurans CH34]
gi|93355721|gb|ABF09810.1| conserved protein of unknown function UPF0001 [Cupriavidus
metallidurans CH34]
Length = 229
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 103/228 (45%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ K I +A A R V+L+AVSK V ++R A GQ F EN +Q
Sbjct: 1 MSVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQ 60
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K + FIG LQSNK + FD + + R K A LS +
Sbjct: 61 EGLDKIAALGDLRSRIAWHFIGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---- 174
L V IQVN E KSG++P + L + GLM IP +
Sbjct: 121 PLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLRGLMAIPAPAADLAAQRVPFA 180
Query: 175 ---YLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL E+ + + LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 181 ALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGAR 228
>gi|253990754|ref|YP_003042110.1| hypothetical protein PAU_03280 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211639085|emb|CAR67697.1| Hypothetical protein yggS [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782204|emb|CAQ85368.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 231
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + I +A +R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 NIEQNLQDVRTHIVIAAQKCERAPEEITLLAVSKTKPVEDIEKAIIAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A LS + + + L
Sbjct: 63 VEKITHFANRDDLIWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAQRLSEQRPEGMKPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
+ IQ+N E KSGI ++ + + + GLM IP P F +
Sbjct: 123 ILIQINISDEQSKSGIQLDELPMLATEVNKLPHVKLRGLMAIPAPEPDYERQLMVFRRMK 182
Query: 179 EIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 183 QVFLNLKTKYPQIDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGARQY 229
>gi|145629031|ref|ZP_01784830.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
22.1-21]
gi|144978534|gb|EDJ88257.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
22.1-21]
Length = 236
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 11/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRVKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPGEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+S++ + K + LSMGMT D AI G+T VRIG+ IF
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIF 226
>gi|220928048|ref|YP_002504957.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
gi|219998376|gb|ACL74977.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
Length = 235
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +I+ +A + R + L+AV+K V+ +I+ G F EN++QE
Sbjct: 5 TIKQNLDDIYSRIKIAAEKSGRKAQDIKLIAVTKTVEVGRIKNVCEYGIHDFGENRVQEL 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + Q IG LQ NKV I+ +I +V + A + K + +
Sbjct: 65 LEKYDKFDESI--QWHLIGHLQKNKVKYIIDKVHMIHSVDSFELAKEIDNRAGKAGKRMN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E K GI P++ ++V Q +++ G+M I P GNP+ + ++
Sbjct: 123 ILLQVNVSGEETKFGIKPDEVNEYVGFISQLKNISLRGMMTIAPFAGNPQEIRPIFKKLY 182
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE+AI G+ VRIG+GIFG+R
Sbjct: 183 DIYIDIKNKRIDNVNMDYLSMGMSNDFEVAIEEGSNIVRIGTGIFGKRNYP 233
>gi|221133769|ref|ZP_03560074.1| hypothetical protein GHTCC_02484 [Glaciecola sp. HTCC2999]
Length = 235
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ +I A A R SV L+AVSK + A GQ F EN +QE
Sbjct: 4 TIAQNIENILSQITVLAQDADREPASVQLLAVSKTKPISDVIQAYDAGQRHFGENYVQEG 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+ FIG +QSNK I FD ++ R K A L+ + + L
Sbjct: 64 VEKVHALAHLSDLVWHFIGPIQSNKSKFIAECFDWCHSIDRLKIAQRLNNQRAVDQKPLQ 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E+ K+GI P + Q QL + G+M IP A +A
Sbjct: 124 VCIQVNIDNEVTKAGITPEELPAIASQIAQMPQLTLRGIMAIPKATSIITEQRDSFERLA 183
Query: 182 RECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D AI +G+T VR+G+GIFG+R
Sbjct: 184 HLYQALQTNFPDVDILSMGMSGDIGPAIEAGSTMVRVGTGIFGQRTPS 231
>gi|209965826|ref|YP_002298741.1| hypothetical protein RC1_2548 [Rhodospirillum centenum SW]
gi|209959292|gb|ACI99928.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 241
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 102/222 (45%), Positives = 140/222 (63%), Gaps = 1/222 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A R V+LVAVSK+ +K+R AL+ GQ +F EN++QEA
Sbjct: 17 DIAADLAAVRTAIAGAADAVGRDPRGVTLVAVSKVQPVEKLRAALAAGQRVFGENRVQEA 76
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW + DV+L IG LQ+NKV E V+LFDVI+TV R K A L+ E +Q+R+
Sbjct: 77 KAKWPALKAEYPDVELHLIGPLQTNKVKEAVALFDVIQTVDRPKLAQALAAECRRQNRWP 136
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Y++VNTG E QK+GI P + F+ C+ +Y + V GLM IPPA P PHF LL+++
Sbjct: 137 RFYVEVNTGEEPQKAGIAPAEVGAFLAACKAEYGVQVAGLMAIPPAEDEPSPHFALLADL 196
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
AR + LSMGM+ DF++A+ GAT VR+G+ IFGER T
Sbjct: 197 ARRHFVPGLSMGMSHDFDVAVRLGATVVRVGTAIFGERATPT 238
>gi|163745433|ref|ZP_02152793.1| alanine racemase domain protein [Oceanibulbus indolifex HEL-45]
gi|161382251|gb|EDQ06660.1| alanine racemase domain protein [Oceanibulbus indolifex HEL-45]
Length = 217
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 103/219 (47%), Positives = 134/219 (61%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + K +I + A R SV L+AVSK+ ++R L G IF EN++QE
Sbjct: 1 MSLSD----IKNRIAKAEADAGRAAGSVKLIAVSKVQPDARVRAVLDEGHRIFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW R+E+ DV+L IG LQSNKV + + L D I TV R K A ++ + R
Sbjct: 57 AEGKWPGFREEFADVELHLIGPLQSNKVRQAIELADAIHTVDRPKLAKTIARLAEELGRC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G+MP + DF+ CR L ++GLMCIPP P HF LL++
Sbjct: 117 PDLFIQVNTGEEDQKAGVMPREADDFIAECRA-LDLPIKGLMCIPPVDEAPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAARNDLSGLSMGMSGDFEQAIALGATHVRVGSAIFGER 214
>gi|120598147|ref|YP_962721.1| alanine racemase domain-containing protein [Shewanella sp. W3-18-1]
gi|146293781|ref|YP_001184205.1| alanine racemase domain-containing protein [Shewanella putrefaciens
CN-32]
gi|120558240|gb|ABM24167.1| alanine racemase domain protein [Shewanella sp. W3-18-1]
gi|145565471|gb|ABP76406.1| alanine racemase domain protein [Shewanella putrefaciens CN-32]
Length = 232
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A R ++ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQCRIAQAAQKCARQAHNIRLLAVSKTKPIEDIIAAYHAGQRCFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + D++ FIG LQSNK + + FD + TVSR+K A L+ + L
Sbjct: 63 AAKITELSKNYPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIALRLNEQRPTSMAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQ+N E KSGI NQ L Q L + GLM IP A N + F L
Sbjct: 123 NVCIQINISDEDTKSGIDANQMMPLAELISQLPNLKLRGLMAIPTATDNSTLQRQEFTKL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ E K + LSMGM+ D + AIA G+T VRIGS IFGER
Sbjct: 183 KQLFDELKQHYADVDTLSMGMSNDLDTAIACGSTMVRIGSAIFGERHY 230
>gi|260913719|ref|ZP_05920195.1| YggS family pyridoxal phosphate enzyme [Pasteurella dagmatis ATCC
43325]
gi|260632258|gb|EEX50433.1| YggS family pyridoxal phosphate enzyme [Pasteurella dagmatis ATCC
43325]
Length = 233
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + +Q+I+ A+R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 1 MTIKQNVTQIQQRIQYYTAQAQRQQSAVKLLAVSKTKTVEDIYQAYQAGQTTFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K +++ +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GIDKIAYFQQQNIELEWHFIGPLQSNKTRLVAEHFDWMQTLDRIKIADRLNEQRPYYKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI PN + L + GLM IP + + +
Sbjct: 121 LNVLIQINISDENSKSGITPNDMLALATHIQNLPHLRLRGLMAIPAPTDDLQQQEQAFNA 180
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MNSLFIALQQALPEAQIDTLSMGMTDDMASAIKCGSTMVRIGTAIFGAREY 231
>gi|116751046|ref|YP_847733.1| alanine racemase domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116700110|gb|ABK19298.1| alanine racemase domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 234
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 115/230 (50%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ ++++ + A R +V LVAV+K V + +IR + G + EN +QEA
Sbjct: 3 TVAENLERIQERMNAACSRAGRDPAAVRLVAVTKTVPTDRIREGVEAGLTLLGENYIQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L V FIG LQSNK D + TV R + A L + K++R +P
Sbjct: 63 RRKIEALEDLA-VSWHFIGHLQSNKARVAAEYCDWVHTVDRLRLAVELDRQARKRNRVIP 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
V +QVN G E +SG+ P+ L+V GLM +PP N +
Sbjct: 122 VLLQVNVGDEQSRSGVSPDDLPKLFEAVAALSGLSVRGLMTLPPYFENAQEVRPFFRLLR 181
Query: 180 --------IARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA LT+LSMGM+ DFE+A+ GAT VRIG+ +FG RP
Sbjct: 182 ELLERLRGIAPRPGELTELSMGMSNDFEVAVEEGATLVRIGTALFGGRPA 231
>gi|296314878|ref|ZP_06864819.1| pyridoxal phosphate enzyme, YggS family [Neisseria polysaccharea
ATCC 43768]
gi|296838328|gb|EFH22266.1| pyridoxal phosphate enzyme, YggS family [Neisseria polysaccharea
ATCC 43768]
Length = 228
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|114564024|ref|YP_751538.1| hypothetical protein Sfri_2860 [Shewanella frigidimarina NCIMB 400]
gi|114335317|gb|ABI72699.1| Protein of unknown function UPF0001 [Shewanella frigidimarina NCIMB
400]
Length = 228
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ + + +I +A R +SL+AVSK I A GQ +F EN +QE
Sbjct: 3 TIADRISIAQSRINQAAQKCSRSSAEISLLAVSKTKPISDIVAAYQAGQRLFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D++ FIG LQSNK + FD + T+SR K A L + + L
Sbjct: 63 ETKINALQADYPDIEWHFIGPLQSNKTKIVAEHFDWMHTLSRAKIAQRLHEQRPINKQPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG+ + L + GLM IP A + + F L
Sbjct: 123 NVCIQVNISQEQSKSGVNAEDVAMLALTISSLSNLKLRGLMAIPTATDDIQLQQQEFSQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + K + LSMGM+ D ++AIA+G+T VRIGS IFGER
Sbjct: 183 KQIFDQLKQQYPSVDTLSMGMSGDMDIAIANGSTMVRIGSAIFGER 228
>gi|239503167|ref|ZP_04662477.1| TIM-barrel fold family protein [Acinetobacter baumannii AB900]
Length = 230
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 120 LNICLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADA--KK 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKVQHAHPEDWDTLSMGMSGDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|242281265|ref|YP_002993394.1| alanine racemase domain protein [Desulfovibrio salexigens DSM 2638]
gi|242124159|gb|ACS81855.1| alanine racemase domain protein [Desulfovibrio salexigens DSM 2638]
Length = 234
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K+++ + + A R + V+++AVSK+ + I + + G F E+ +QEA
Sbjct: 8 LIENISEVKEEVAQACLRAGRKPEEVTVMAVSKLHAASDIEILYNAGHRCFGESYVQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ FIG LQS K ++ F + +V K A LL+ + +
Sbjct: 68 AKQEELSGL-DIDWHFIGGLQSKKAKQVAGKFSAVHSVDSSKLAGLLNKKAEALDVVQNI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVNT E QK G+ V + L + GLM +PP G+P +P+F L
Sbjct: 127 LIQVNTACEGQKCGVTEETLPALVEEIQGYKNLKLIGLMALPPFFGDPEGARPYFARLRM 186
Query: 180 IARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ KL +LSMGMT DF +AI G+T +R+G+ IFG RP
Sbjct: 187 LSEGMEKLFGIKLPELSMGMTGDFRVAIEEGSTMIRVGTKIFGTRP 232
>gi|27375734|ref|NP_767263.1| hypothetical protein bll0623 [Bradyrhizobium japonicum USDA 110]
gi|27348872|dbj|BAC45888.1| bll0623 [Bradyrhizobium japonicum USDA 110]
Length = 229
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 94/215 (43%), Positives = 126/215 (58%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L + +I + A+R + SV+L+AVSK D+ I ++ GQ +F EN++QEAK K
Sbjct: 15 NALAAVEAEIARACKDARRDRASVTLIAVSKTFDADAITPVIAAGQRVFGENRVQEAKGK 74
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W D+ L IG LQSNK E V+LFD I +V R L+ E+ Q + ++
Sbjct: 75 WPALTSVYPDIALHLIGPLQSNKAKEAVALFDAIHSVDRPSICQALAKEIESQKKHPQLF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+G+ P + F+ CR Y L + GLMCIPP P HF L ++IA
Sbjct: 135 VQINTGEEPQKAGVAPGEADAFLASCRDTYGLTISGLMCIPPVDEPPAAHFALTAKIAAR 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 195 NGLTNLSMGMSADFATAIMLGATHVRVGSAIFGHR 229
>gi|84500586|ref|ZP_00998835.1| alanine racemase domain protein [Oceanicola batsensis HTCC2597]
gi|84391539|gb|EAQ03871.1| alanine racemase domain protein [Oceanicola batsensis HTCC2597]
Length = 240
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 93/219 (42%), Positives = 121/219 (55%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +I +A A R V+L+AVSKM + +R L G F EN++QE
Sbjct: 24 MSLTE----ITSRIAKAAEGAGRAPSDVTLIAVSKMQPDENVRSVLEDGHRTFGENRVQE 79
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R + DV L IG LQ+NK + + L I +V R K A ++
Sbjct: 80 AAGKWPAFRDAFGDVDLHIIGPLQTNKARQAMELAQSIHSVDRPKLARTIARLADDIGSC 139
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G++P++T FV R L + GLMCIPP P HF LL++
Sbjct: 140 PDLFIQVNTGEEPQKAGVLPDETDGFVSEVRA-LGLPLRGLMCIPPVEEAPSLHFALLAK 198
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 199 LAARNGLEGLSMGMSGDFEQAIALGATHVRVGSAIFGAR 237
>gi|325129170|gb|EGC52016.1| hypothetical protein TIGR00044 [Neisseria meningitidis N1568]
Length = 234
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|145219349|ref|YP_001130058.1| alanine racemase domain-containing protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205513|gb|ABP36556.1| alanine racemase domain protein [Chlorobium phaeovibrioides DSM
265]
Length = 232
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+IE +A+ A R S+ L+AVSK + IR A G +F E+ LQE
Sbjct: 3 SIRAGLQNIQQRIEAAAVEAGRDPASIRLIAVSKTKPAGMIREAFDAGHSLFGESYLQEF 62
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ PL + ++ FIG LQSNKV ++ +I + + TA LS + ++Q+
Sbjct: 63 LEKRTDPLLEGLPIEWHFIGHLQSNKVRSVIGKVSLIHGIDKISTARELSRQALRQNLHA 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ ++ + + GLM I P + + F L +
Sbjct: 123 DYLLEVNTSGESTKYGMAEDEVLSAAETLFTLPSITLRGLMNIASPDEASARNEFRRLRQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + L++LSMGM+ DFE A+ GAT +R+G+ IFG R
Sbjct: 183 LLKQLREVAPNPEELSELSMGMSGDFESAVMEGATMIRVGTAIFGAR 229
>gi|254485880|ref|ZP_05099085.1| conserved hypothetical protein TIGR00044 [Roseobacter sp. GAI101]
gi|214042749|gb|EEB83387.1| conserved hypothetical protein TIGR00044 [Roseobacter sp. GAI101]
Length = 228
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 92/219 (42%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L+ +I + A R SV+L+AVSK+ +++ L G F EN++QE
Sbjct: 12 MS----LEDITTRIAKAEADAGRAPGSVTLIAVSKVQPLARVQAVLEQGHRCFGENRVQE 67
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW ++++D + L IG LQSNK + LFD I T+ R K A L+ + +
Sbjct: 68 AEGKWPDFKQQFDGIDLHLIGPLQSNKARPAMELFDAIHTLDRPKLAKTLARLAQELGQC 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G++P + F+ C+ L + GLMCIPP HF LL++
Sbjct: 128 PDLFIQVNTGEEDQKAGVLPREADTFIKECQD-LDLPIRGLMCIPPVDEEAALHFALLAK 186
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 187 IAARNGLEGLSMGMSSDFEKAIALGATHVRVGSAIFGER 225
>gi|311108932|ref|YP_003981785.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310763621|gb|ADP19070.1| alanine racemase, N-terminal domain protein 2 [Achromobacter
xylosoxidans A8]
Length = 280
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 107/227 (47%), Gaps = 11/227 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +I ++A+ A R +V L+ VSK V+ +IR+A G ENKLQE +KW
Sbjct: 34 NLAAVNGRIADAALRAGRDPATVRLLPVSKTVEEARIRLAYEAGCRYLGENKLQEVSRKW 93
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D++ IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 94 EAMADLTDLRWSVIGHLQTNKAKLVARYAAEFQALDSLRVAEALDRRLQAEGRQLDVFVQ 153
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P +T F+ L V GLM + + F LL +
Sbjct: 154 VNTSGEASKYGLQPEETAAFLRELPAFSGLRVRGLMTLALFSAEAARVRECFVLLRTLRD 213
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L +LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 214 QLRQEAPAGIGLDELSMGMSGDYEIAIEEGATVVRVGQAIFGARNTP 260
>gi|134298580|ref|YP_001112076.1| alanine racemase domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051280|gb|ABO49251.1| alanine racemase domain protein [Desulfotomaculum reducens MI-1]
Length = 226
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 12/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + V K KI SA+ A R SV L+AV+K V + K R + G EN++QE
Sbjct: 1 MSIAENISVIKGKIIESALRAGRDPASVRLIAVTKTVSADKARECIDAGVGDLGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG LQ+NKV I ++ ++ R A + ++
Sbjct: 61 FRNKLPEVP---GARWHLIGHLQTNKVKYITGEVTLLHSLDRWSLAEEIHKRSLEAGIVT 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P +QVN E K G+ + +DF+ ++++GLM I P + NP +P F L
Sbjct: 118 PALVQVNVAGEETKFGMAVQEVRDFITEVAGLSGISIQGLMTIAPLVENPEEVRPVFRQL 177
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + K+ +LSMGMT D+++AI GAT VRIG+ IFG R
Sbjct: 178 RELATDLQEVPGVKMEQLSMGMTNDYQVAIEEGATLVRIGTAIFGSR 224
>gi|83309121|ref|YP_419385.1| TIM-barrel fold family protein [Magnetospirillum magneticum AMB-1]
gi|82943962|dbj|BAE48826.1| Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magneticum AMB-1]
Length = 216
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 105/220 (47%), Positives = 143/220 (65%), Gaps = 7/220 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L+ + +I +A RP V+LVAVSK ++ IR A++ GQ +F EN++Q
Sbjct: 1 MSAITTGLEAVRSRIAAAAQ--GRP---VTLVAVSKTYPAEAIREAMAAGQRVFGENRVQ 55
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EAK K+ + D++L IG LQ+NKV + V+LFDVIETV R K A ++ EM + R
Sbjct: 56 EAKAKFPGLRDEYPDLELHLIGPLQTNKVRDAVALFDVIETVDRPKLARAIADEMQRSGR 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V IQVNTG E QK+GI P + V LCR ++ L + GLMCIPPA +P PHF LL+
Sbjct: 116 RPRVLIQVNTGLEPQKAGIGPGELDAMVALCRDEFGLPLAGLMCIPPADEDPAPHFRLLA 175
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A+ L +SMGM+ DFE+A+A GAT VR+GS IFG R
Sbjct: 176 DMAKRHGLGVVSMGMSGDFEIAVAEGATHVRVGSAIFGHR 215
>gi|325133219|gb|EGC55889.1| hypothetical protein TIGR00044 [Neisseria meningitidis M6190]
Length = 228
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|292493756|ref|YP_003529195.1| alanine racemase domain protein [Nitrosococcus halophilus Nc4]
gi|291582351|gb|ADE16808.1| alanine racemase domain protein [Nitrosococcus halophilus Nc4]
Length = 231
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L + +I + RP SV+LVA +K IR A++CGQ F EN LQ
Sbjct: 1 MTQIAQQLAQVQTRIAEAEQRFGRPAGSVTLVAATKTCSVSAIRAAIACGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + +++ FIG +QSNK +I + FD + +V R K A L+ + +
Sbjct: 61 EALPKIKE-LESENLEWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVAQRLNQQRPPELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E KSG P + + + +L++ GLM +PP + +
Sbjct: 120 LNVCLQVNISGEDSKSGTTPEELTELAKAVAEMPRLSLRGLMTLPPLNSDFEAQRQPFRA 179
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + KL LS+GMT D E AIA GAT VR+G+ IFG RP +
Sbjct: 180 LHQLWQELRQGGLKLDTLSIGMTDDLEAAIAEGATLVRVGAAIFGRRPPK 229
>gi|121633935|ref|YP_974180.1| hypothetical protein NMC0037 [Neisseria meningitidis FAM18]
gi|120865641|emb|CAM09361.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
Length = 228
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|319427153|gb|ADV55227.1| PLP-dependent amino acid racemase, YggS [Shewanella putrefaciens
200]
Length = 239
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A R ++ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQCRIAQAAQKCARQAHNIRLLAVSKTKPIEDIIAAYHAGQRCFGENYVQEG 69
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + D++ FIG LQSNK + + FD + TVSR+K A L+ + L
Sbjct: 70 AAKITELSKNYPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIALRLNEQRPTSMAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQ+N E KSGI NQ L Q L + GLM IP A N + F L
Sbjct: 130 NVCIQINISDEDTKSGIDANQMMPLAELISQLPNLKLRGLMAIPTATDNSTLQRQEFTKL 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ E K + LSMGM+ D + AIA G+T VRIGS IFGER
Sbjct: 190 KQLFDELKQHYADVDTLSMGMSNDLDTAIACGSTMVRIGSAIFGERHY 237
>gi|332308055|ref|YP_004435906.1| alanine racemase domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175384|gb|AEE24638.1| alanine racemase domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 227
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L++ + I S A RP +SV L+AV+K I A G +F EN +QE
Sbjct: 3 TIAERLKIALKTITQSVCEANRPANSVKLLAVTKTKPVSDIVQAYEAGHRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + D++ FIG LQSNK + FD + ++ R K A L+ + L
Sbjct: 63 VDKIHQLSELDDIEWHFIGPLQSNKTRPVAENFDWVHSIDRLKIAQRLNDQRSAHK-KLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E K+G+ P L + GLM IP A N + LS +
Sbjct: 122 VCIQVNIDNEASKAGVPPEDVNLLAEQISNMPNLTLRGLMTIPKAQQNAEMQRKSLSAMN 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D +LAI G+T VRIGS IFG R
Sbjct: 182 ALFVQLQTKYPQIDTLSMGMSNDMQLAIECGSTMVRIGSAIFGSR 226
>gi|148560723|ref|YP_001259647.1| hypothetical protein BOV_1741 [Brucella ovis ATCC 25840]
gi|148371980|gb|ABQ61959.1| conserved hypothetical protein TIGR00044 [Brucella ovis ATCC 25840]
Length = 226
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 114/223 (51%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPLQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYS 223
>gi|119356538|ref|YP_911182.1| alanine racemase domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119353887|gb|ABL64758.1| alanine racemase domain protein [Chlorobium phaeobacteroides DSM
266]
Length = 229
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I ++ A R V L+AVSK ++ +R A GQ+ F E+ +QE
Sbjct: 3 SIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQEF 62
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ PL + +Q FIG LQSNK+ I ++ + R TA+ LS ++Q+
Sbjct: 63 LEKRDDPLLQGLPLQWHFIGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNLHT 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K GI P+ + + + GLM I P + F L
Sbjct: 123 EFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALRGLMTIASPDTDLARKEFRELRN 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K LT+LSMGM++DFE AI GAT +RIG+ IFG R
Sbjct: 183 LLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR 229
>gi|193076643|gb|ABO11330.2| hypothetical protein A1S_0898 [Acinetobacter baumannii ATCC 17978]
Length = 230
Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQCGDDQAA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 120 LNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTAAFADA--KK 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|148270160|ref|YP_001244620.1| alanine racemase domain-containing protein [Thermotoga petrophila
RKU-1]
gi|170288885|ref|YP_001739123.1| alanine racemase domain-containing protein [Thermotoga sp. RQ2]
gi|281412498|ref|YP_003346577.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
gi|147735704|gb|ABQ47044.1| alanine racemase domain protein [Thermotoga petrophila RKU-1]
gi|170176388|gb|ACB09440.1| alanine racemase domain protein [Thermotoga sp. RQ2]
gi|281373601|gb|ADA67163.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
Length = 229
Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ +++N+A+ A R V LV SK +++ + G F EN+ Q+
Sbjct: 1 MGLKENLERVLNRMKNAALRANRDPFEVRLVVASKYASVQQMEELVFLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK K + FIG +Q+NKV IV ++I +V RE+ + K +
Sbjct: 61 LVKK-SEYFKGKPIIWHFIGRIQTNKVKYIVPRCELIHSVWREEELKEIEKRAEKLGKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LL 177
+ ++VN E K+G++ + ++F+ LC++ + V G M + P NP+ + L
Sbjct: 120 KILLEVNVFKEETKAGLLVEEVEEFLKLCQEFPHVEVLGFMTMAPYAENPEEVRWGFRTL 179
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RELRDELASRFNGNVKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|209694136|ref|YP_002262064.1| membrane protein, related to K+ transport [Aliivibrio salmonicida
LFI1238]
gi|208008087|emb|CAQ78228.1| membrane protein, related to K+ transport [Aliivibrio salmonicida
LFI1238]
Length = 255
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
S+ + +IENS R DSV L+AVSK + + A+ GQ F EN +Q
Sbjct: 3 SIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + +++ FIG +QSNK I FD + ++ R K A L+ +
Sbjct: 63 VDKVHYFQKNHSNIELEWHFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSDLG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSG N+ L + GLM IP + N +
Sbjct: 123 ELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLTLRGLMSIPANVSNYEEQLAAFK 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A + ++ LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNY 232
>gi|317131682|ref|YP_004090996.1| alanine racemase domain protein [Ethanoligenens harbinense YUAN-3]
gi|315469661|gb|ADU26265.1| alanine racemase domain protein [Ethanoligenens harbinense YUAN-3]
Length = 242
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +IE +A ++ R D+V+LVAV+K + + + AL G +F EN++QE
Sbjct: 16 IARNLDAVRARIEQAARVSGRSADAVTLVAVTKTMPASDVNAALVHGVRVFGENRVQELL 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K +R IG LQ+NKV +++ +I++V A + + K+ + V
Sbjct: 76 GKLPDIRLGEGQCAHLIGHLQTNKVRQVIDKVAMIQSVDSVHLAEEIDKQAAKRGLRMDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
I+VN G E KSG+ P + L V GLM +PP +P+F + +
Sbjct: 136 LIEVNIGGEEAKSGVPPQDLPALLEAAAGFPHLRVCGLMAVPPVCADKEAVRPYFRAMRK 195
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DF++AI G+T VR+G+ IFG R
Sbjct: 196 LFIDIAPKKSDNVSMHILSMGMSGDFDIAIEEGSTMVRVGTAIFGRR 242
>gi|304320521|ref|YP_003854164.1| hypothetical protein PB2503_04737 [Parvularcula bermudensis
HTCC2503]
gi|303299423|gb|ADM09022.1| hypothetical protein PB2503_04737 [Parvularcula bermudensis
HTCC2503]
Length = 226
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 89/218 (40%), Positives = 123/218 (56%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + + +I +A A R D+V L VSK ++KI L+ G F EN++QEA
Sbjct: 5 DVIANYEQVQSRIRRAAQEAARSPDAVELTVVSKTWPTEKISPLLAHGHRRFGENRVQEA 64
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ KW D + IG+LQSNK ++ + LFDV+E++ REK +R
Sbjct: 65 QAKWPALKSAYPDCCVHLIGALQSNKAADTIGLFDVVESLDREKLVHAFRRLADDGARLP 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVNTG E QKSG++P FV CR L++ GLM IPP P PHF LL E+
Sbjct: 125 AFFVQVNTGEEAQKSGVLPADAVAFVDWCRNDQHLDILGLMAIPPQDDPPAPHFALLHEL 184
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A E ++ LSMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 185 AAEAGVSALSMGMSGDYETAVHLGATMVRVGSAIFGPR 222
>gi|254524687|ref|ZP_05136742.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
gi|219722278|gb|EED40803.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
Length = 257
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ I A R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLATVRQRIADACIRAGRDPASVRLLPVSKTVDDARIRMAVAAGCHELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAEAMADL-GVHWSVIGHLQTNKARYVARFASEFQALDSLRVAETLQQRLQLEDRTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ +DFV +L V GLM + P + + F L +
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEDFVQQLPAFDRLRVRGLMTLAVFTPEVERVRACFVRLRQ 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDQLQHSAPAGIDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGARATP 245
>gi|28872160|ref|NP_794779.1| hypothetical protein PSPTO_5046 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855414|gb|AAO58474.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 228
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 107/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPAGDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELADL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|182677225|ref|YP_001831371.1| alanine racemase domain-containing protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633108|gb|ACB93882.1| alanine racemase domain protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 230
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 101/218 (46%), Positives = 133/218 (61%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L V + I +A A R SV+LV VSK ++ I LS G+ IF EN++QEA
Sbjct: 13 NVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAGERIFGENRVQEA 72
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW V+L IG LQSNK E V FD IETV REK A ++ E+ K +
Sbjct: 73 MDKWPALRPAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARAIAEEIQKSGKHP 132
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVNTG E QK+G++P + F+ C++++ L + GLMCIPP PHF LL++I
Sbjct: 133 RLYIQVNTGAEPQKAGVLPQEADSFIEQCQKEFGLVISGLMCIPPVDDQASPHFALLNKI 192
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A LT LSMGM+ D+ELAI GAT VRIGS +FG R
Sbjct: 193 AERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR 230
>gi|163781970|ref|ZP_02176969.1| hypothetical protein HG1285_17594 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882502|gb|EDP76007.1| hypothetical protein HG1285_17594 [Hydrogenivirga sp. 128-5-R1-1]
Length = 227
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ ++ IE + + R V L+ SK V ++I+ CG F EN++QE
Sbjct: 1 MTACGNLQHVRELIEKACARSGRSPAEVILLGASKTVPPERIKEFYECGLKTFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR+ D+ FIG LQ+NKV ++ +I +V R+ A + +
Sbjct: 61 FTTKYEALRRL-DIDWHFIGRLQTNKVKYLMGKVSLIHSVDRKSLADEIEKRAQRAGLIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN G E K G+ P + + + L VEGLM IPP +P +P F L
Sbjct: 120 RVLLEVNVGGEETKGGVAPGELPELFSYVKGLPSLKVEGLMTIPPYREDPEEVRPFFSEL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ R + L LSMGM+ DFE+AI GAT VR+G+ +FGER
Sbjct: 180 RELKRRLEEEFGTTLKHLSMGMSHDFEVAIEEGATIVRVGTLLFGER 226
>gi|46143323|ref|ZP_00135498.2| COG0325: Predicted enzyme with a TIM-barrel fold [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207540|ref|YP_001052765.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae L20]
gi|307256072|ref|ZP_07537860.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|126096332|gb|ABN73160.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|306865494|gb|EFM97389.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 231
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG+LQSNK + FD I+TV R K A LS + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYS 227
>gi|260555789|ref|ZP_05828009.1| TIM-barrel fold family protein [Acinetobacter baumannii ATCC 19606]
gi|260410700|gb|EEX03998.1| TIM-barrel fold family protein [Acinetobacter baumannii ATCC 19606]
Length = 235
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 6 MNYLQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 66 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 125 LNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFADA--KK 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 LFDAVKVQHAHPEDWDTLSMGMSGDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|78186366|ref|YP_374409.1| hypothetical protein Plut_0478 [Chlorobium luteolum DSM 273]
gi|78166268|gb|ABB23366.1| Protein of unknown function UPF0001 [Chlorobium luteolum DSM 273]
Length = 229
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
+ + L ++++ ++A A R +V L+AVSK + IR A GQ +F E+ LQE
Sbjct: 4 IASNLLEIRRRVHDAARAAGRDPSAVRLIAVSKTKPAGMIREAFDAGQTLFGESYLQEFL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + ++ FIG LQSNKV ++ +I + + TA LS + +K+
Sbjct: 64 EKCDDAELEGCPLEWHFIGHLQSNKVRSVIGRVSLIHGIDKVSTAEELSKQAVKRGINAD 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEI 180
+++NT E K G+ P + K + + GLM I P + F L +
Sbjct: 124 YLLEINTSGEATKYGMQPLEAKAAAETLFGLPGITLRGLMTIASPDPSQAETEFRDLRLL 183
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K LT+LSMGM+ DFE AI GAT VR+G+ IFG R
Sbjct: 184 LDAIKTQAPHPEELTELSMGMSGDFEAAIRQGATLVRVGTAIFGWR 229
>gi|254673073|emb|CBA07735.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 228
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A G+ F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKAGGSEAELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|330831214|ref|YP_004394166.1| alanine racemase domain-containing protein [Aeromonas veronii B565]
gi|328806350|gb|AEB51549.1| Alanine racemase domain protein [Aeromonas veronii B565]
Length = 233
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 107/233 (45%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L K++I +A A R + L+AVSK + I A + GQ F E+ Q
Sbjct: 1 MNQIAQHLFQVKERIAQAAERASRNLQQIRLLAVSKTKPVEAIMAAHAAGQRCFGESYAQ 60
Query: 60 E---AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
E + D++ FIG LQSNK + FD +++V R+K L+ +
Sbjct: 61 EAAAKIDTLRQQPEYSDIEWHFIGPLQSNKSKLVAERFDWVQSVDRDKLIDRLNNQRPTT 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-------N 169
L V +Q+N E KSG + L +L + GLM IP
Sbjct: 121 MAPLNVCLQINISGESSKSGTSEQEIFRLAELVSHSERLVLRGLMAIPEHTSDESVLAAQ 180
Query: 170 PKPHFYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +E+AR+ + LSMGMT D ELAIA G+T VR+G+ IFG R
Sbjct: 181 MTRMQTLFTELARQYPTVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGARDYS 233
>gi|260466803|ref|ZP_05812988.1| alanine racemase domain protein [Mesorhizobium opportunistum
WSM2075]
gi|259029415|gb|EEW30706.1| alanine racemase domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 220
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 108/211 (51%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP- 67
K KI + A R +V+LVAVSK ++ I + GQ +F EN++QEA+ KW P
Sbjct: 10 AVKAKIAAAEREAGREAGAVTLVAVSKTFEAADIGPVIEAGQRVFGENRVQEAQGKWPPL 69
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ +Q R +Y+QVN
Sbjct: 70 KGAFPDIELHLIGPLQSNKAREAVALFDVIETVDREKIAAELAREIARQGRAPKLYVQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+GI P + FV CR + L +EGLMCIPPA NP PHF LL ++ +E +
Sbjct: 130 TGSEPQKAGIEPREAVAFVARCRDVHGLAIEGLMCIPPADENPGPHFALLEKLGKEAGVA 189
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 190 KLSMGMSGDYETAIAFGATSVRVGSAIFGSR 220
>gi|219872205|ref|YP_002476580.1| succinyl-diaminopimelate desuccinylase with a TIM-barrel fold
[Haemophilus parasuis SH0165]
gi|219692409|gb|ACL33632.1| succinyl-diaminopimelate desuccinylase with a TIM-barrel fold
[Haemophilus parasuis SH0165]
Length = 227
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ A RP+ SV L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MSISQNLATISQQIQQYCQQANRPEQSVKLLAVSKTKPISAIAEAIEAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG LQSNK + FD ++T+ R K A LS + + L
Sbjct: 61 GIEKIQHFAENDTLEWHFIGLLQSNKTRVVAEHFDWVQTIDRLKIAQRLSEQRPEHLPVL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI + + Q +L + GLM IP P+ +
Sbjct: 121 NVLIQINISDEASKSGISAKEMLELATQISQLPRLKLRGLMAIPKPESEPEQQKIALAQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ + + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 181 NELFLQLQSQFEGIDTLSMGMSDDMPSAIECGSTMVRIGTAIFGAR 226
>gi|221069576|ref|ZP_03545681.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
gi|220714599|gb|EED69967.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
Length = 268
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I + R SV L+ VSK +R+A + G ENK+QEA
Sbjct: 23 DFRSNLATVQARIAAACQRVGRDPASVRLLPVSKTKPQASLRLAYAAGCRWLGENKVQEA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW L+ D++ IG LQ+NK + + + + A L + + R L
Sbjct: 83 LGKWESLQDLTDLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALDRRLQAEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V++QVNT E K G+ P DF+ L V GLM + + F LL
Sbjct: 143 VFVQVNTSGEASKYGLSPEAVPDFIRQLPVFSALRVRGLMTLALFSAEAERVRRCFILLR 202
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + L LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 203 QLRDQLRQGAPAGMALDALSMGMSGDFEIAIEEGATVVRVGQAIFGAR 250
>gi|330505390|ref|YP_004382259.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
gi|328919676|gb|AEB60507.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
Length = 230
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 103/226 (45%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A ++R + L+AVSK ++ IR A + G F EN LQ
Sbjct: 1 MSTIAENIAKVGARIREAAQASQRNLADIGLLAVSKTKPAEAIREAHAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALEKQTQLTDL-PLIWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P + + L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEDSKSGCSPEELPELAKAIAALPNLQLRGLMTIPEPTEDVTAQHAAFAR 179
Query: 180 IARECKLTKL-----SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L SMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRQLRDDLALDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDY 225
>gi|256061832|ref|ZP_05451967.1| hypothetical protein Bneo5_15933 [Brucella neotomae 5K33]
gi|261325836|ref|ZP_05965033.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
gi|261301816|gb|EEY05313.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
Length = 226
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 115/223 (51%), Positives = 149/223 (66%), Gaps = 2/223 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D+ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDTHAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYS 223
>gi|184157169|ref|YP_001845508.1| TIM-barrel fold family protein [Acinetobacter baumannii ACICU]
gi|332874170|ref|ZP_08442094.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6014059]
gi|183208763|gb|ACC56161.1| predicted enzyme with a TIM-barrel fold [Acinetobacter baumannii
ACICU]
gi|322507066|gb|ADX02520.1| TIM-barrel fold family protein [Acinetobacter baumannii 1656-2]
gi|323516933|gb|ADX91314.1| TIM-barrel fold family protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332737645|gb|EGJ68548.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6014059]
Length = 230
Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 120 LNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADA--KK 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|311109274|ref|YP_003982127.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310763963|gb|ADP19412.1| alanine racemase, N-terminal domain protein 3 [Achromobacter
xylosoxidans A8]
Length = 239
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 110/232 (47%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +Q+I ++ A R DSV+L+ VSK IR A++ G + ENK QE
Sbjct: 6 TMAGRLAQIQQRIADACARAGRSPDSVTLLPVSKTFGVDAIREAMALGLTRYGENKTQEI 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +Q IG LQ+NK + ++++ R + A L + + R L
Sbjct: 66 RQKAAALDGL-GLQWVLIGHLQTNKARDAARDAAEVQSLDRVELAEALHRRLANEGRTLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V +QV T E K G+ P + L V+GLM + P + F L
Sbjct: 125 VLVQVKTSSEPSKYGMDPADVPAFLRRIATDFPTLRVQGLMTLAVNSPDAAEVRACFRAL 184
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L +LSMGM+ DFELAI G+T VRIGS IFG R
Sbjct: 185 RELRDRLRQENPPGVSLDRLSMGMSGDFELAIEEGSTEVRIGSAIFGARSYP 236
>gi|161869070|ref|YP_001598236.1| hypothetical protein NMCC_0053 [Neisseria meningitidis 053442]
gi|161594623|gb|ABX72283.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 228
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|75674288|ref|YP_316709.1| hypothetical protein Nwi_0089 [Nitrobacter winogradskyi Nb-255]
gi|74419158|gb|ABA03357.1| Protein of unknown function UPF0001 [Nitrobacter winogradskyi
Nb-255]
Length = 224
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 133/213 (62%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A+R + +V+LVAVSK D+ I ++ GQ +F EN++QEA++KW
Sbjct: 12 LASVEAEIVRACRDARRERSTVTLVAVSKTFDADAITPVIAAGQRVFGENRVQEAQRKWP 71
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + L IG LQSNK E V+LFD I +V R L+ E+ +Q+R +++Q
Sbjct: 72 ELIAAHPGLALHLIGPLQSNKAKEAVALFDAIHSVDRVSLCEALAKEIDRQNRRPSLFVQ 131
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G+ P+ DF+ CR + L + GLMCIPP P PHF L ++IAR
Sbjct: 132 INTGEEPQKAGVSPSNADDFIARCRDTHGLTISGLMCIPPMDDAPAPHFALTAKIARRNG 191
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DF +AIA GAT +R+GS IFG R
Sbjct: 192 IKQLSMGMSADFAIAIALGATHIRVGSAIFGTR 224
>gi|117619465|ref|YP_858120.1| hypothetical protein AHA_3664 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560872|gb|ABK37820.1| conserved hypothetical protein TIGR00044 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 233
Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L K++I +A A R +D + L+AVSK + + A + GQ F E+ Q
Sbjct: 1 MNQIAEHLLQVKERIVQAASRAGRSRDHIQLLAVSKTKPLEAVCEAYAAGQRRFGESYAQ 60
Query: 60 EAKKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K D++ FIG LQSNK + FD +++V REK L+ +
Sbjct: 61 EAATKIDTLREQGACADIEWHFIGPLQSNKSKLVAERFDWVQSVDREKLIERLNNQRPSG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-------N 169
L V +Q+N E KSG + L + +L + GLM IP
Sbjct: 121 LAPLNVCLQINISGESSKSGTSEQEIFRLAELVSRCERLRLRGLMAIPEHTSDEAVLAAQ 180
Query: 170 PKPHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +E+A++ + LSMGMT D ELAI G+T VRIG+ IFG R
Sbjct: 181 MVRMQTLFTELAQQYPGVDTLSMGMTEDLELAIGHGSTMVRIGTAIFGARDYS 233
>gi|325203182|gb|ADY98635.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M01-240355]
Length = 228
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|52425760|ref|YP_088897.1| hypothetical protein MS1705 [Mannheimia succiniciproducens MBEL55E]
gi|52307812|gb|AAU38312.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 230
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L+ + I + A P +SV L+AVSK + + A GQ F EN +QE
Sbjct: 1 MEIANNLKQIHKNIVSICQNAGLPSNSVKLLAVSKTKPVEDLEQAYQAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + + D++ FIG LQSNK + FD ++TV REK A L+ +
Sbjct: 61 GVEKIEFFQAKHPDMEWHFIGPLQSNKTRLVAEYFDWMQTVDREKIAIRLNEQRPANKSP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI P + L + GLM IP A + S
Sbjct: 121 LNVLIQINISDEESKSGIKPADMMALAEIIENLPHLRLRGLMAIPAATHDVAIQAQSFSA 180
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MHKLFVELQQSLPNQRIDTLSMGMTDDMTAAIKCGSTMVRIGTAIFGSRN 230
>gi|193215363|ref|YP_001996562.1| alanine racemase domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088840|gb|ACF14115.1| alanine racemase domain protein [Chloroherpeton thalassium ATCC
35110]
Length = 229
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 11/229 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L I A R +D V L+A+SK ++ I A GQ F EN +Q
Sbjct: 1 MSAISENLARINDIILKVCENAGRKRDEVKLIAISKRKSAEAILEAYQAGQRYFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K + + F G LQ+NK+ I +++T+ + TA LS K+
Sbjct: 61 EFLDKVEHPLLANLEPEWHFTGHLQTNKIKYIADKVAMVQTIDKFATAEALSKRAEKEGL 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLL 177
+P+ ++VN E K G+MP + + + GLM I P + + F +
Sbjct: 121 IVPILLEVNISNEDSKYGVMPEDLLFETEKIHELPNVAIHGLMTIGSPDLSDVGKEFQQM 180
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ +LSMGM++DF++AI GAT VRIG+ IFGER
Sbjct: 181 RHLLEQIAENSPNPEQVKELSMGMSQDFDIAIEEGATMVRIGTAIFGER 229
>gi|312127594|ref|YP_003992468.1| alanine racemase domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777613|gb|ADQ07099.1| alanine racemase domain protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 233
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + I A R VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIERACIKAGRKPGEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L + FIG LQ+NK+ I +I ++ + L K +
Sbjct: 66 LPKFQELPYL---EWHFIGRLQTNKIKYIYDKISLIHSIDSPQQIDELEKRCAKAGKMCS 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V I++N G E K GI P + + R + ++G M IPP + +F +
Sbjct: 123 VLIEINIGGEESKGGINPEKVDHLIEKIRNCPHIILKGFMTIPPIEDDEMKLRGYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPKK 233
>gi|254805871|ref|YP_003084092.1| hypothetical protein NMO_1956 [Neisseria meningitidis alpha14]
gi|254669413|emb|CBA08616.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|261391600|emb|CAX49038.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|325207100|gb|ADZ02552.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
NZ-05/33]
Length = 228
Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|33599228|ref|NP_886788.1| hypothetical protein BB0239 [Bordetella bronchiseptica RB50]
gi|33575274|emb|CAE30737.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 250
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + +I+ + + RP +SV+L+ VSK + IR A + G F ENK QE
Sbjct: 19 SMPHRLAAIQARIKAACERSARPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEI 78
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D+Q IG LQ+NK ++ ++++ R + A L + ++R L
Sbjct: 79 RHKAPELADL-DLQWVMIGHLQTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLD 137
Query: 122 VYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V +QV T E K G+ P L L V+GLM + +P+ F LL
Sbjct: 138 VLVQVKTSPEPSKYGLAPELLPGFLRTLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLL 197
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L +LSMGM+ DFE+AI G+T +RIGS +FG RP
Sbjct: 198 RELRDRARDSVPGVALDRLSMGMSGDFEIAIEEGSTEIRIGSALFGARPAS 248
>gi|325135265|gb|EGC57888.1| hypothetical protein TIGR00044 [Neisseria meningitidis M13399]
gi|325137262|gb|EGC59856.1| hypothetical protein TIGR00044 [Neisseria meningitidis M0579]
Length = 228
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|308388274|gb|ADO30594.1| hypothetical protein NMBB_0057 [Neisseria meningitidis alpha710]
Length = 228
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|300693595|ref|YP_003749568.1| enzyme with a tim-barrel fold protein [Ralstonia solanacearum
PSI07]
gi|299075632|emb|CBJ34928.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum PSI07]
Length = 226
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 99/218 (45%), Positives = 136/218 (62%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + ++ I+++AI + R D+V+LVA SK V+ + I+ A+ G +F EN++QEA
Sbjct: 4 NLKENIGRIRKAIQHAAIDSGRRTDAVTLVAASKTVEPQHIQKAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KKW + ++L IG LQSNKV + V LFD IE+V R + A ++ E KQ R
Sbjct: 64 VKKWPELRNRNPGIELHLIGPLQSNKVRQAVGLFDAIESVDRARLAQAIAEEAEKQGRDP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVN G E QK G++P + + CR YQLNV+GLMCIPPA +P HF L I
Sbjct: 124 AIYIQVNVGKEPQKGGVLPAEAPALIRACRDVYQLNVQGLMCIPPAGFDPSDHFACLRSI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + L LSMGM+ D+ AIA GAT VR+G+ IFG R
Sbjct: 184 AEDHGLGILSMGMSADYRQAIAQGATHVRVGTSIFGAR 221
>gi|126666565|ref|ZP_01737543.1| hypothetical protein MELB17_20686 [Marinobacter sp. ELB17]
gi|126628953|gb|EAZ99572.1| hypothetical protein MELB17_20686 [Marinobacter sp. ELB17]
Length = 234
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 76/232 (32%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + Q+IE + + A R SV L+AVSK + ++R A++ GQ F EN LQEA
Sbjct: 3 SIADNINSVTQRIEKATLQAGRKPHSVRLLAVSKTRQADELREAVAAGQQDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ +++ FIG +QSNK ++I S F + V R K A L+ + L
Sbjct: 63 LDKIANLQDIPELRWHFIGPIQSNKTAQIASAFCWVHGVERLKIARRLNDQRDTALPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG N+ + QL + GLM IP +
Sbjct: 123 ICLQVNIDNEPSKSGCSLNELPALAAAIAELPQLTLRGLMAIPNPERGEAALRESFRAMN 182
Query: 182 REC-----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L LSMGM+ D ELAI G+T VR+G+ +FG R ++
Sbjct: 183 NALIQLRQDQPGTGPLDTLSMGMSDDLELAIGEGSTWVRVGTAVFGPRQQKS 234
>gi|331005494|ref|ZP_08328872.1| hypothetical protein IMCC1989_2043 [gamma proteobacterium IMCC1989]
gi|330420686|gb|EGG94974.1| hypothetical protein IMCC1989_2043 [gamma proteobacterium IMCC1989]
Length = 228
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 8/224 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + L +Q+I +A RP++ + L+AVSK ++ I A + GQ F EN LQEA
Sbjct: 3 SLNDALIHVQQQIHIAAKKHGRPEEDIHLLAVSKTQPAETIAAAFALGQTAFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L ++ FIG +QSNK EI F + +V R K + LS + L
Sbjct: 63 REKQEALAHL-PIEWHFIGPIQSNKTREIAEHFSWVHSVDRLKIVTRLSQQRPVHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG+ + + I Q + + GLM IP + + +A
Sbjct: 122 ICLQVNLDDETSKSGVALQELEQLAIATIQLPNVKLRGLMAIPKKTTDITQQRAAFATLA 181
Query: 182 RECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R K L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 182 RSLKQLSSIALLDTLSMGMSNDMEAAIAEGATIVRVGSAIFGAR 225
>gi|327533820|pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
gi|327533821|pdb|3R79|B Chain B, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
Length = 244
Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats.
Identities = 107/217 (49%), Positives = 144/217 (66%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ +Q+I + A + R V+LVAVSK D++ I+ + GQ +F EN++QEA+
Sbjct: 6 IEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQ 65
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW K D++L IG LQSNK ++ V+LFDV+E++ REK A LS E +Q R L
Sbjct: 66 GKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLR 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
Y+QVNTG E QK+GI P +T FV CR + +L VEGL CIPPA NP PHF LL+++A
Sbjct: 126 FYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLXCIPPAEENPGPHFALLAKLA 185
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+C L KLS G + DFE A+ GATSVR+GS IFG R
Sbjct: 186 GQCGLEKLSXGXSGDFETAVEFGATSVRVGSAIFGSR 222
>gi|310766479|gb|ADP11429.1| UPF0001 protein yggS [Erwinia sp. Ejp617]
Length = 266
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 32 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKPASAIEEAVAAGQCCFGENYVQEG 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
I L + FIG LQSNK + FD T+ R + A LS + L
Sbjct: 92 V-DKIQLLANPALVWHFIGPLQSNKSRLVAENFDWCHTIDRLRIAERLSQQRPDALAPLN 150
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V IQ+N E KSGIM + +L + GLM IP L++
Sbjct: 151 VLIQINISAEQSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDGYDSQLAVCQLMA 210
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 211 AAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 257
>gi|326791371|ref|YP_004309192.1| hypothetical protein Clole_2286 [Clostridium lentocellum DSM 5427]
gi|326542135|gb|ADZ83994.1| protein of unknown function UPF0001 [Clostridium lentocellum DSM
5427]
Length = 229
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L++ +++IE SAI + R + ++L+AVSK I+ A++ G F EN +QE
Sbjct: 1 MKERLEMIRKEIEESAIKSGRKVEDITLIAVSKTYPLASIQEAITLGCKDFGENHVQELV 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + V IG LQ+NKV I+ +I +V R K A + + K+ +
Sbjct: 61 QKMDELNES--VHWHLIGHLQTNKVKYIIGRTTLIHSVDRLKLAEEIEKQSAKKGYITDI 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
I+VN E K G + + ++ + + V GLM + P + NP+ + + ++
Sbjct: 119 LIEVNVAKEASKHGFLVEEVIPIMVELAKMKHIRVRGLMTVAPFVANPEENRPIFRKLYD 178
Query: 181 ---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LSMGM+ D+++AI GAT VRIG+ IFG R
Sbjct: 179 LSVDIQKQKFDNISSDILSMGMSNDYKIAIEEGATMVRIGTAIFGNRDY 227
>gi|289209575|ref|YP_003461641.1| alanine racemase domain protein [Thioalkalivibrio sp. K90mix]
gi|288945206|gb|ADC72905.1| alanine racemase domain protein [Thioalkalivibrio sp. K90mix]
Length = 237
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +++I ++ A R SV L+AVSK + IR + GQ F EN +QE K+
Sbjct: 8 FRAVRERIVHACEQAGRDPGSVRLLAVSKTRTADDIRALHALGQTAFGENYVQELIDKFD 67
Query: 67 PLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L + + +IG+LQSNK + + T+ RE+ A LS + + L V
Sbjct: 68 ALETGPNPLGLEWHYIGALQSNKTRPVAERAHWVHTIDRERIARRLSEQRPEHLPPLQVC 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEI 180
+Q+N E QK+G+ P L + GLM +P + F L ++
Sbjct: 128 LQINVSGESQKAGVPPEAAAALADTVANLPGLTLRGLMTLPAAESNRERQRRPFARLRQL 187
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L LSMGM+ D E AI GA+ VRIG+ +FG R
Sbjct: 188 KDELNARGHGLDTLSMGMSGDLEAAILEGASLVRIGTALFGPR 230
>gi|218767245|ref|YP_002341757.1| hypothetical protein NMA0217 [Neisseria meningitidis Z2491]
gi|121051253|emb|CAM07528.1| hypothetical protein NMA0217 [Neisseria meningitidis Z2491]
Length = 228
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYDKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSRQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|238752323|ref|ZP_04613802.1| alanine racemase [Yersinia rohdei ATCC 43380]
gi|238709484|gb|EEQ01723.1| alanine racemase [Yersinia rohdei ATCC 43380]
Length = 231
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIEKNLQDVRAQIATAARNCARSPEEVTLLAVSKTKPVTAIEEAIAAGQYAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + +++ FIG LQSNK + F TV R K A LS +
Sbjct: 63 VDKIRYFTDNAPTSNLEWHFIGPLQSNKSKLVAENFAWCHTVDRLKIAQRLSAQRPSGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 123 ALNVLIQVNISDEQSKSGIALAELPALAASISELPNLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKTSYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|15675991|ref|NP_273118.1| hypothetical protein NMB0053 [Neisseria meningitidis MC58]
gi|7225273|gb|AAF40522.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316985989|gb|EFV64927.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325199282|gb|ADY94737.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
H44/76]
Length = 228
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|197106974|ref|YP_002132351.1| predicted enzyme with a TIM-barrel fold [Phenylobacterium zucineum
HLK1]
gi|196480394|gb|ACG79922.1| predicted enzyme with a TIM-barrel fold [Phenylobacterium zucineum
HLK1]
Length = 220
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 99/214 (46%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+I +A R V+LVAVSK + I L+ GQ +F EN++QEA +W
Sbjct: 8 YADVVARIARAAQACGRDPAEVTLVAVSKQQPWEAIEPVLAAGQKVFGENRVQEAMARWE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + L IG LQ+NK E V+ FDVIE++ R K A L+ ++ KQ R +Y+QV
Sbjct: 68 --GRAEGLTLHLIGPLQTNKAKEAVAFFDVIESLDRGKLARALAEQVQKQGRTPRLYVQV 125
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
NTG E QK+G++P + F+ CR Y L VEGLMCIPPA P PHF LL++IA L
Sbjct: 126 NTGEEPQKAGVVPAEADGFIAACRGDYGLQVEGLMCIPPAAEPPGPHFALLAKIAARNGL 185
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
KLSMGM+ DFE AI GATSVR+GS +FG R
Sbjct: 186 AKLSMGMSDDFETAIRFGATSVRVGSAVFGARSA 219
>gi|312883848|ref|ZP_07743565.1| TIM-barrel fold family protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368306|gb|EFP95841.1| TIM-barrel fold family protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 238
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE R +D+V L+AVSK I A + GQ F EN +QE
Sbjct: 3 SIQQNIEQITSQIEAIKQKCHRTQDTVQLLAVSKTKPVDAILEAANAGQRAFGENYVQEG 62
Query: 62 KK---KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + E +++ FIG +QSNK + F + +V++ K A L+ + +
Sbjct: 63 TEKVAYFASHHPELELEWHFIGPIQSNKSRYVAENFHWVHSVNKAKLAQRLNDQRPEGLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI N+ L L + GLM IP N +
Sbjct: 123 PLQVLIQVNTSGETSKSGINDNEIFSLAELISSLPNLTLRGLMSIPAQTSNYEEQLSAFG 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+A ++ LSMGM+ D + AI SG T VRIG+ IFG+R
Sbjct: 183 ELANLQQTLKNRFSNQQIDTLSMGMSGDMQAAIESGTTMVRIGTAIFGQRDYS 235
>gi|300703107|ref|YP_003744709.1| hypothetical protein RCFBP_10764 [Ralstonia solanacearum CFBP2957]
gi|299070770|emb|CBJ42067.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
CFBP2957]
Length = 240
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + +LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACMLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRSGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
L + +++N + K G+ P+ +L + GLM +P G+P
Sbjct: 121 GLPPLQICLEINISRQASKHGVPPDADGVLALARAVAALPRLQLRGLMAVPEPAGDPAAR 180
Query: 174 FYLLSE---IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRALADRLREAGLPIDTLSMGMSSDLEDAIAEGATIVRVGSAIFGARQY 235
>gi|94496649|ref|ZP_01303225.1| hypothetical protein SKA58_18132 [Sphingomonas sp. SKA58]
gi|94424009|gb|EAT09034.1| hypothetical protein SKA58_18132 [Sphingomonas sp. SKA58]
Length = 246
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 2/219 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L + + +A L R D + L+AVSK D+ IR ++ GQ +F EN++QE+++
Sbjct: 12 AQRLAAVRDAMRRAARLTDRSADDIRLIAVSKTHDADAIRPLIAAGQRVFGENRVQESQQ 71
Query: 64 KWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW + D++L +G LQSNK +E V+LFDVI + R + L+ M R +P
Sbjct: 72 KWPALREAQEDIELHLVGQLQSNKAAEAVALFDVIHGLDRPSLLTALARAMDGAGRRVPC 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+IQVN G E QK G P +I + + + GLMC+PPA P P F LL+++AR
Sbjct: 132 FIQVNIGAEEQKGGC-PIADTPALIAAARDADIPILGLMCVPPADVEPAPFFALLAKMAR 190
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E L +LSMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 191 EEGLERLSMGMSGDYETAIMLGATDIRVGTALFGERPAP 229
>gi|319943328|ref|ZP_08017610.1| alanine racemase domain protein [Lautropia mirabilis ATCC 51599]
gi|319743143|gb|EFV95548.1| alanine racemase domain protein [Lautropia mirabilis ATCC 51599]
Length = 278
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 96/228 (42%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L +IE + R +V L+ VSK IR A + G ENK+QEA
Sbjct: 31 DFRHNLAAVHARIEAACQRVGRDPATVRLLPVSKTKGEDAIRAAYAAGCRFLGENKVQEA 90
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW ++ D++ IG LQ+NK + + + + A L + + R L
Sbjct: 91 YGKWQAMQDLTDLKWSVIGHLQTNKAKVVARFAAEFQALDSLRVAEALDKRLQAEGRSLD 150
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
V++QVNT E K G+ P FV L V GLM + +
Sbjct: 151 VFVQVNTSGEPSKFGLSPEDVPAFVQALPGFSALRVRGLMTLALFSSEAERVRQCFILLR 210
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 211 SLRDRLRQEAPAGLSFDELSMGMSGDYEIAIEEGATVVRVGQAIFGAR 258
>gi|169634028|ref|YP_001707764.1| hypothetical protein ABSDF2533 [Acinetobacter baumannii SDF]
gi|169152820|emb|CAP01843.1| conserved hypothetical protein [Acinetobacter baumannii]
Length = 235
Score = 174 bits (441), Expect = 7e-42, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 6 MNYLQDARQHVLQQIRTACELAQREPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 66 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 125 LNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADA--KK 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 LFDAVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|52842231|ref|YP_096030.1| pyridoxal-5'-phosphate dependent enzyme family protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52629342|gb|AAU28083.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|307610739|emb|CBX00346.1| hypothetical protein LPW_20721 [Legionella pneumophila 130b]
Length = 231
Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ I + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + LR + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALRDL-PICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|328948141|ref|YP_004365478.1| hypothetical protein Tresu_1273 [Treponema succinifaciens DSM 2489]
gi|328448465|gb|AEB14181.1| protein of unknown function UPF0001 [Treponema succinifaciens DSM
2489]
Length = 238
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 17/238 (7%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+ + + + +I+ + + R + V L AVSK ++ + AL GQ +F EN+
Sbjct: 1 MTAEQIAENFESVRNQIKEAEKKSGRKEGCVKLCAVSKFHPAEDVLAALKTGQTLFGENR 60
Query: 58 LQEAKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+QE+ K+ + ++ IGSLQ+NKV + V + I++V RE+ + + + K
Sbjct: 61 VQESFAKFTQINSVSKIKPDLHIIGSLQTNKVKKAVEIASCIQSVDREELLAEIEKQCAK 120
Query: 116 QSRFLPVYIQVNTGYEIQK--SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+ + V +++TG + + + +GLM + P + K
Sbjct: 121 IEKKIEVLFEIHTGEDSKSGYKEKSVLLKSVENCANGIYPHIVPKGLMTMAPFTQDEKLI 180
Query: 174 FYLLSEIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
S++ ++ +LSMGM+ D+++AI G+T VRIG+ +FGER
Sbjct: 181 HASFSKLRNLKDELNKSFPSLEINELSMGMSGDYKIAIEEGSTLVRIGTALFGERDYS 238
>gi|54294912|ref|YP_127327.1| hypothetical protein lpl1991 [Legionella pneumophila str. Lens]
gi|53754744|emb|CAH16231.1| hypothetical protein lpl1991 [Legionella pneumophila str. Lens]
Length = 231
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ I + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNINKVRELITQTELSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + LR + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALRDL-PICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|330873946|gb|EGH08095.1| hypothetical protein PSYMP_05414 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 228
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 107/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPAGDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELADL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPESLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + +QVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICVQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQAQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|332535496|ref|ZP_08411274.1| hypothetical protein PH505_cw00020 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035073|gb|EGI71589.1| hypothetical protein PH505_cw00020 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 237
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I ++A +R + V+L+AVSK S+ I A GQ F E+ +QEA
Sbjct: 12 TIAERLTSAYARIADAAKNTQRNTNEVTLLAVSKTKPSEDIIAAYEHGQREFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ FIG +QSNK + + + FD +++V R K A L + L
Sbjct: 72 IDKIAQLQSYSDIIWHFIGPIQSNKSALVAANFDWVQSVDRIKIAKRLDSQRPDDKPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQVN E KSG ++ + Q L + GLM IP ++
Sbjct: 132 ILIQVNISNEEAKSGCRRDEIDELADYINQCEHLTLRGLMAIPAKSDKLDTQIQSFEQLQ 191
Query: 181 --ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 192 TCFDKLKTQYPQVDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|294338787|emb|CAZ87121.1| putative Alanine racemase, yggS [Thiomonas sp. 3As]
Length = 243
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 108/228 (47%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+I +A A R SV+L+AVSK ++ I A + GQ F EN +QEA
Sbjct: 11 LAHPLSAVRQRIAQAAAAAGRDPHSVTLLAVSKTFPAEDIARAAALGQTAFGENYVQEAV 70
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR +W Q FIG LQSNK ++ FD + ++ R K A LS + + L
Sbjct: 71 DKIAALRPDWPALQWHFIGPLQSNKTRDVAEHFDWVHSIDRLKLAQRLSDQRPAELDPLQ 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSG+ P L + GLMCIP + +
Sbjct: 131 VCIQVNVDSETTKSGVRPEDASALAAAVAALPNLRLRGLMCIPAPREGLDAQRAPFARLR 190
Query: 182 ---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E A+ GAT VR+GS IFG RP
Sbjct: 191 ALRDAIAAEHGLTLDTLSMGMSADLEAAVLEGATIVRVGSAIFGARPA 238
>gi|170725693|ref|YP_001759719.1| alanine racemase domain-containing protein [Shewanella woodyi ATCC
51908]
gi|169811040|gb|ACA85624.1| alanine racemase domain protein [Shewanella woodyi ATCC 51908]
Length = 244
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 112/227 (49%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +I +A ++ R D + L+AVSK + I A + GQ F EN +QE
Sbjct: 14 TIADRLADAQHRIIQAAQISSRNSDEIQLLAVSKTKPNTDIIAAYTAGQRHFGENYVQEG 73
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K ++ FIG LQSNK + SLFD + T+SREK A L+ + + L
Sbjct: 74 EAKVNALKSSCPEIHWHFIGPLQSNKSKIVASLFDWMHTLSREKIAQRLNEQRPDTLQPL 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSG ++ + +L + GLM IP A + ++
Sbjct: 134 NVCIQVNISQESSKSGATVDEVHSLASSISKLPKLKLRGLMAIPTATQDVLLQKAEFKKL 193
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A + LSMGM+ D E AI G+T VRIGS IFGER
Sbjct: 194 QELYLNLQATYPDIDTLSMGMSNDLEQAIEHGSTMVRIGSAIFGERD 240
>gi|121602346|ref|YP_988440.1| hypothetical protein BARBAKC583_0102 [Bartonella bacilliformis
KC583]
gi|120614523|gb|ABM45124.1| conserved hypothetical protein TIGR00044 [Bartonella bacilliformis
KC583]
Length = 226
Score = 174 bits (440), Expect = 9e-42, Method: Composition-based stats.
Identities = 106/216 (49%), Positives = 140/216 (64%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ KQ+I NS +R DSV L+AVSK V + KI L GQ FAEN++QEA +K
Sbjct: 10 EAWKNTKQEIANSCKEYQRSLDSVELIAVSKTVPADKIIPLLQAGQSCFAENRVQEAAEK 69
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W ++ ++L IG LQSNK +E V +FDVI+TV REK A LS EM KQ + P Y
Sbjct: 70 WPYLRQQFSPIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKSLSEEMHKQKKHFPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSG+ P DFV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 130 VQVNIGLEPQKSGLAPEDVVDFVAHCKNHYGLDIVGLMAIPPIEDNPGPYFALLAKLAKK 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LTKLSMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 190 SGLTKLSMGMSNDFQTALQFGSNVLRIGSALFGQRP 225
>gi|165975509|ref|YP_001651102.1| hypothetical protein APJL_0052 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307249250|ref|ZP_07531247.1| hypothetical protein appser4_670 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|165875610|gb|ABY68658.1| hypothetical protein APJL_0052 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306858774|gb|EFM90833.1| hypothetical protein appser4_670 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 231
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIVAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + K L
Sbjct: 59 GIEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLNAQRPKNKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQ+N E KSGI P + Q L + GLM IP + K +
Sbjct: 119 NVLIQINISDEASKSGIQPEGLDELAKAISQLPNLRLRGLMAIPKPESEVEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQLFDRLQAEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYS 227
>gi|163734310|ref|ZP_02141750.1| hypothetical protein RLO149_08699 [Roseobacter litoralis Och 149]
gi|161392318|gb|EDQ16647.1| hypothetical protein RLO149_08699 [Roseobacter litoralis Och 149]
Length = 218
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 91/219 (41%), Positives = 121/219 (55%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + Q+IE + A R SV L+AVSK+ +++ L G F EN++QE
Sbjct: 2 MSLSD----ISQRIEKAVADAGRAAGSVKLIAVSKVQPDERVEAVLKEGHRCFGENRVQE 57
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R ++D V L IG LQ+NK + LF I T+ R K A +
Sbjct: 58 AAGKWPAFRDDYDGVDLHLIGPLQTNKARQAFDLFQSIHTLDRPKLAKAFARLAQDTGHC 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P+ FV CR L ++GLMCIPP HF LL++
Sbjct: 118 PEMFVQVNTGEEPQKAGVFPSDADGFVAECRA-LDLPIKGLMCIPPIDEEASLHFALLAK 176
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AI+ GAT +R+GS IFG R
Sbjct: 177 IAERNGLAGLSMGMSDDFEKAISFGATHIRVGSAIFGAR 215
>gi|238759328|ref|ZP_04620494.1| alanine racemase [Yersinia aldovae ATCC 35236]
gi|238702489|gb|EEP95040.1| alanine racemase [Yersinia aldovae ATCC 35236]
Length = 228
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 104/225 (46%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + KI +A R + V L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIEQNLQDVRAKIATAARNCARSPEEVILLAVSKTKPVTAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHYFANNANLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSGI + LN+ GLM IP + + + ++
Sbjct: 123 VLIQVNISDEESKSGIALAGLPALADSLSELPNLNLRGLMAIPAVESDYQRQLAVFEQMH 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQMDTLSMGMTDDMAAAISAGSTLVRIGTAIFGSR 227
>gi|332799438|ref|YP_004460937.1| hypothetical protein TepRe1_1484 [Tepidanaerobacter sp. Re1]
gi|332697173|gb|AEE91630.1| protein of unknown function UPF0001 [Tepidanaerobacter sp. Re1]
Length = 230
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 14/230 (6%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MSL + K +I+ +A A R +++ +VAV+K + + I+ A+ G V+ EN++Q
Sbjct: 1 MSLLEENIANIKSRIKFAAERAGRNPENIDIVAVTKTIPPEIIQKAVDSGLVLLGENRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA+ K +VQ IG LQ NKV + LF +I+++ A + + +
Sbjct: 61 EARDKKE--LVNGNVQWHLIGHLQRNKVKMALGLFSMIQSIDSLPLAEEIQKRAEQIQQT 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +QVN G E K G+ P+ TK F+ L V GLM I P NP +P+F
Sbjct: 119 VDVLVQVNIGREKTKYGVDPDNTKSFIEKIALFPNLRVRGLMAIAPFKQNPEDVRPYFRQ 178
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L EI + K + LSMGM+ DFE+A+ GA VRIG+GIFG R
Sbjct: 179 LREIFKNIKQTHIDNVNMEYLSMGMSNDFEVAVEEGANMVRIGTGIFGVR 228
>gi|54297941|ref|YP_124310.1| hypothetical protein lpp1996 [Legionella pneumophila str. Paris]
gi|53751726|emb|CAH13148.1| hypothetical protein lpp1996 [Legionella pneumophila str. Paris]
Length = 230
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ I + + + R +SV L+AVSK S+ IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELITQTELSSNRQPNSVLLLAVSKEQSSELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q +
Sbjct: 61 AQEKILALKDL-PICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPI 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPPQNNMQTQYDLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLMESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|325143359|gb|EGC65691.1| hypothetical protein TIGR00044 [Neisseria meningitidis 961-5945]
Length = 228
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A G+ F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKAGGSEAELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|237747221|ref|ZP_04577701.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378572|gb|EEO28663.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 239
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +Q+I+++A +R +V L+AVSK + I A GQ F EN QEA
Sbjct: 3 TISDHLQEIRQRIQSAARTTERNPSTVHLLAVSKTQPTNAILEAADAGQKAFGENYEQEA 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + +R + FIG +QSNK I FD + +V REK A LS +
Sbjct: 63 VSKILAIRASRPDLKLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSDQRPAALA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L + +QVN E KSGI P +L + GLM IP +P + F
Sbjct: 123 PLNICLQVNISGEASKSGIHPENLLGMAKTVSAMPRLKLRGLMAIPEPESSPDRQREPFK 182
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + + + LSMGM+ D + AI GAT+VRIG+ IFG+R +
Sbjct: 183 AMKVLFNQLRKAGYDVDTLSMGMSDDMDAAIEEGATTVRIGTAIFGKRNYSS 234
>gi|313673061|ref|YP_004051172.1| alanine racemase domain protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312939817|gb|ADR19009.1| alanine racemase domain protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 229
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+G++++ +K+ +A+ + R D ++LVAVSK ++I A G IF E++LQEA
Sbjct: 2 IGDRIRYITEKMHRAAVKSGRRLDDITLVAVSKTFPVERIIDAYRYGLRIFGESRLQEAS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ IG +Q+NK+ + F +I +V A ++ R +
Sbjct: 62 GKIEHLKSFPDIKFHMIGHVQTNKIRMLKDYFSLIHSVDSLHLAEKMNSYFYSIHRVQDI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
IQVN E QK G+ + + + + L V GLM IPP +P+ + ++
Sbjct: 122 LIQVNLVNEPQKYGVKIEEFDEMMEKMKDFTCLRVRGLMFIPPFYDDPEMNRDNFRKMKA 181
Query: 182 ---------RECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R+ K LSMGM+ DFE+AI GA VRIGS IFGER
Sbjct: 182 LFDETREKYRKFKEFDILSMGMSDDFEIAIEEGANMVRIGSAIFGER 228
>gi|50842463|ref|YP_055690.1| hypothetical protein PPA0978 [Propionibacterium acnes KPA171202]
gi|289425389|ref|ZP_06427166.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK187]
gi|289427244|ref|ZP_06428960.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J165]
gi|295130540|ref|YP_003581203.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK137]
gi|50840065|gb|AAT82732.1| conserved protein [Propionibacterium acnes KPA171202]
gi|289154367|gb|EFD03055.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK187]
gi|289159713|gb|EFD07901.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J165]
gi|291377313|gb|ADE01168.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK137]
gi|327330199|gb|EGE71948.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL097PA1]
gi|332675380|gb|AEE72196.1| hypothetical protein PAZ_c10210 [Propionibacterium acnes 266]
Length = 238
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/235 (31%), Positives = 111/235 (47%), Gaps = 13/235 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + ++ IG LQ+NK + + + K A L + K+ R
Sbjct: 61 ALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L V +QVN+ E QKSGI P + DF L+V GLM + + +
Sbjct: 121 LRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVADCFDL 180
Query: 178 -----SEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
++ +E ++LSMGM+ D E+AIA G+T VRIG+ IFG R P +T
Sbjct: 181 VVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPART 235
>gi|326334346|ref|ZP_08200560.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325693505|gb|EGD35430.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 268
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +Q +++I + A R V L+ +K V ++IR A + G + AENK+QE
Sbjct: 28 TIEKNIQQVQERINKACETAGRDPKEVKLLLATKTVTPERIRQAFAAGYTLIAENKVQEL 87
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ + FIG LQ+NK+ +I+ +E++ R A L ++ + + +
Sbjct: 88 KEKYEALKSVPHIN-HFIGHLQTNKIKDILKYEVSCVESLDRYDLAEKLHQKLSQIGKQM 146
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
V+IQVNT E K G+ P + V Q L++ GLM + F LL
Sbjct: 147 DVFIQVNTSAEESKFGVAPENVLELVKQVAQFPTLHIRGLMTIGLFSAEQEKVRKCFQLL 206
Query: 178 SEIARE---CKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I ++ L +LSMGM+ DFE+AIA GAT VR+G+ IFG+R
Sbjct: 207 KNIQQQIITLNLPDVQPKELSMGMSGDFEIAIAEGATIVRVGTAIFGQRIYP 258
>gi|37625084|gb|AAQ95748.1| conserved hypothetical protein [Aeromonas hydrophila]
Length = 233
Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 109/233 (46%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K++I +A A R D + L+AVSK + + A + GQ F E+ Q
Sbjct: 1 MSQIAEHLLQVKERIVQAASRAGRRGDHIQLLAVSKTKPLEAVCEAYAAGQRRFGESYAQ 60
Query: 60 EAKKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K D++ FIG LQSNK + FD +++V REK L+ +
Sbjct: 61 EAATKIDTLREQGTCTDIEWHFIGPLQSNKSKLVAERFDWVQSVDREKLIERLNNQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-------N 169
L V +Q+N E KSG + L + +L + GLM IP
Sbjct: 121 LAPLNVCLQINISGESSKSGTSEQEIFRLAELVSRCERLRLRGLMAIPEHTSDEAVLAAQ 180
Query: 170 PKPHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +E+AR+ + LSMGMT D ELAI G+T VR+G+ IFG R
Sbjct: 181 MVRMQTLFTELARQYPGVDTLSMGMTEDLELAIGHGSTMVRVGTAIFGARDYS 233
>gi|146337353|ref|YP_001202401.1| putative signal peptide [Bradyrhizobium sp. ORS278]
gi|146190159|emb|CAL74151.1| conserved hypothetical protein; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 227
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I+ + AKR + +V+L+AVSK + I + GQ +F EN++QEAK KW
Sbjct: 15 LAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRVFGENRVQEAKGKWP 74
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + L IG LQSNK E V+LF I +V R S L+ E+ Q R +++Q
Sbjct: 75 VMMAAHPGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAKEIGAQGRHPQLFVQ 134
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI P F+ CR+ Y L + GLMCIPP P PHF L ++IA
Sbjct: 135 INTGEEPQKAGIAPGDADAFIAACRRDYGLEISGLMCIPPVDEAPGPHFALTAKIAARNG 194
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 195 LANLSMGMSADFAAAIQFGATHVRVGSAIFGHR 227
>gi|33594951|ref|NP_882594.1| hypothetical protein BPP0235 [Bordetella parapertussis 12822]
gi|33565027|emb|CAE39976.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 256
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + +I+ + + RP +SV+L+ VSK + IR A + G F ENK QE
Sbjct: 25 SMPHRLAAIQARIKAACERSARPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEI 84
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D+Q IG LQ+NK ++ ++++ R + A L + ++R L
Sbjct: 85 RHKAPELADL-DLQWVMIGHLQTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLD 143
Query: 122 VYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V +QV T E+ K G+ P L L V+GLM + +P+ F LL
Sbjct: 144 VLVQVKTSPELSKYGLAPELLPGFLRTLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLL 203
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L +LSMGM+ DFE+AI G+T +RIGS +FG RP
Sbjct: 204 RELRDRARDSVPGVALDRLSMGMSGDFEIAIEEGSTEIRIGSALFGARPAS 254
>gi|163743400|ref|ZP_02150780.1| alanine racemase domain protein [Phaeobacter gallaeciensis 2.10]
gi|161383394|gb|EDQ07783.1| alanine racemase domain protein [Phaeobacter gallaeciensis 2.10]
Length = 218
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 94/221 (42%), Positives = 125/221 (56%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ + +I + A RPK S L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MS----LQDIQARIHIAEENAGRPKGSAKLIAVSKVQPNERVEAVLEEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW + D+ L IG LQSNK + + LF I T+ R K A L+ +
Sbjct: 57 AVGKWPDFAMRYSDLDLHLIGPLQSNKARQAMELFQSIHTLDRPKLAKALARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+GI P + F+ C+ L +EGLMCIPPA P HF LL +
Sbjct: 117 PKLFVQVNTGEEPQKAGIPPREADAFIRECQDM-DLIIEGLMCIPPADEEPSLHFSLLGK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L+ LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 176 IAVRNGLSGLSMGMSGDFETAVALGATHVRVGSAIFGARAY 216
>gi|67921018|ref|ZP_00514537.1| Protein of unknown function UPF0001 [Crocosphaera watsonii WH 8501]
gi|67857135|gb|EAM52375.1| Protein of unknown function UPF0001 [Crocosphaera watsonii WH 8501]
Length = 218
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +I SV LVAV+K I+ A G FAE+++QE
Sbjct: 1 MTIAENLDKILSEI----------PSSVRLVAVTKKKPVTAIKEAYHYGIRDFAESRVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG +Q+NK +I+ F I +V K A L K S +
Sbjct: 51 AILKQEELQDHKDICWHFIGHIQTNKAKKILENFHWIHSVDSLKLAEHLDKLAAKTSIYP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V +QV + K G + + L +EGLM I P +
Sbjct: 111 HVCLQVKLLPDPNKYGWEVMEFWQDLPKLEPLKHLKIEGLMTILPLGLSENECLETFEKT 170
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+A + +L +LSMGM+ D+ LA+ GAT +R+GS IFG R
Sbjct: 171 KELATKINEKSSLQLKELSMGMSNDYLLAVEKGATMIRLGSIIFGARN 218
>gi|239817773|ref|YP_002946683.1| alanine racemase domain protein [Variovorax paradoxus S110]
gi|239804350|gb|ACS21417.1| alanine racemase domain protein [Variovorax paradoxus S110]
Length = 232
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 104/229 (45%), Gaps = 10/229 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +G+ LQ K +I + R V L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MTMIGDDLQQVKNRIAKACAEHGRNPAEVRLLAVSKTFGPEAVREAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L +++ IG LQSNK + FD + + R K A LS +
Sbjct: 61 EGLDKIAALSDLRAELEWHCIGPLQSNKTRPVAEHFDWVHGIDRLKIAERLSAQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V +QVN KSG+ P + L + GLM IP P +
Sbjct: 121 PLQVCLQVNVDGGANKSGVPPEEALPLARAVAALPHLRLRGLMAIPEPAPDFAAQRELCL 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + L LS+GM+ D E A+++G+T VRIG+ IFG RP
Sbjct: 181 RARAVYDAIRDAGVELDTLSLGMSADLEAAVSAGSTMVRIGTAIFGGRP 229
>gi|325131170|gb|EGC53889.1| hypothetical protein TIGR00044 [Neisseria meningitidis OX99.30304]
Length = 228
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S +R + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGVREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|109900019|ref|YP_663274.1| hypothetical protein Patl_3718 [Pseudoalteromonas atlantica T6c]
gi|109702300|gb|ABG42220.1| Protein of unknown function UPF0001 [Pseudoalteromonas atlantica
T6c]
Length = 227
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L++ + I S A RP +SV L+AV+K I A G +F EN +QE
Sbjct: 3 TIAERLKIALKTITQSVCDANRPANSVKLLAVTKTKPVSDIVQAYEAGHRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR+ D++ FIG LQSNK + FD + ++ R K A L+ + L
Sbjct: 63 VGKIQQLRELSDIEWHFIGPLQSNKTRPVAENFDWVHSIDRLKIAQRLNDQRSAHK-KLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E K+G+ ++ L + GLM IP G + +++
Sbjct: 122 VCIQVNVDNESSKAGVAVDEVSTLAEQISVMPNLALRGLMTIPKAQQNDGMQRKSLLVMN 181
Query: 179 EIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + ++ LSMGM+ D +LAI G+T VRIGS IFG R
Sbjct: 182 ELFLQLQTKYPQIDTLSMGMSNDMQLAIECGSTMVRIGSAIFGSR 226
>gi|225021731|ref|ZP_03710923.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
ATCC 33806]
gi|224945427|gb|EEG26636.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
ATCC 33806]
Length = 262
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
Q ++I N+A A R + L+AVSK +A G + EN+ QE +
Sbjct: 30 RANYQAVTERIANAAHAAGRDPADIRLIAVSKTFPISHALLAAEAGMTVLGENRPQELAE 89
Query: 64 KWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R DV IG LQ NK EI + + A L + +R L V
Sbjct: 90 KAQAFRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLELANRTLDV 149
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+IQVNT +E QKSG P++ + +L V GLM + P +P F L
Sbjct: 150 FIQVNTSHESQKSGFAPDEVAAILPSLATLDRLRVRGLMTMAAFSPEESVVRPSFEQLRT 209
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +L +LSMGMT DFE AIA GATSVRIG+ IFG RP
Sbjct: 210 LRDQLQLDAPDGMSLTELSMGMTGDFEWAIAEGATSVRIGTAIFGHRP 257
>gi|325121225|gb|ADY80748.1| conserved hypothetical protein [Acinetobacter calcoaceticus PHEA-2]
Length = 230
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIQTACEHAQRAPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALDKVEALQDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGNDQSA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + + V Q ++ + GLM IP
Sbjct: 120 LNICLQVNIDGQDSKDGCAPEEVAELVGQMSQLPKIKLRGLMVIPAPDNTAAFADA--KA 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKDQHTHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|206890646|ref|YP_002249591.1| hypothetical protein THEYE_A1800 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742584|gb|ACI21641.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 236
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +KI +A+ R + + L+AV+K KI+ A G IF EN++QEAK
Sbjct: 2 LSERISSVVKKITYAALRTGRNPEEIKLIAVTKSQPIDKIKEASQLGLRIFGENRVQEAK 61
Query: 63 KKWIPLRKE-----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L++ ++ IG LQSNKV E V LF++I ++ EK A L++ E K
Sbjct: 62 IKIEALKEFIAQWKMSIEWHMIGHLQSNKVKEAVRLFEIIHSMDSEKLAILINKEAEKVG 121
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ V IQV E K G+ ++ ++ + C L VEGLM IPP NP+
Sbjct: 122 KIQRVLIQVKLSQEESKYGVNIDKIEELMEFCTNLPNLKVEGLMTIPPYFENPEDSRPYF 181
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + L +LSMGM+ DFE+AI GAT VRIG+ +FG+RP
Sbjct: 182 KNLRQIKEILSQKGYCLKELSMGMSNDFEVAIEEGATMVRIGTALFGQRP 231
>gi|83941784|ref|ZP_00954246.1| alanine racemase domain protein [Sulfitobacter sp. EE-36]
gi|83847604|gb|EAP85479.1| alanine racemase domain protein [Sulfitobacter sp. EE-36]
Length = 217
Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats.
Identities = 99/221 (44%), Positives = 124/221 (56%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ +I + A R SV L+AVSK+ ++ LS G F EN++QE
Sbjct: 1 MS----LQDITSRIAKAETDAGRTPGSVELIAVSKVQPDARVAAVLSEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW R+E+D V+L IG LQSNK LFDVI T+ R K A + + R
Sbjct: 57 AEGKWPAFRQEFDGVKLHLIGPLQSNKARSAFELFDVIHTLDRPKLAQTFARLAQEMGRC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P DF+ C L V GLMCIPP HF LL++
Sbjct: 117 PDMFVQVNTGEEDQKAGVHPADADDFIKECLS-LDLPVRGLMCIPPVDEEAALHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAARNGLRDLSMGMSSDFEKAIALGATHVRVGSAIFGERTA 216
>gi|323702134|ref|ZP_08113801.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
574]
gi|323532821|gb|EGB22693.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
574]
Length = 226
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + V K +I ++A+ A R + V ++AV+K V + K + A+ G EN++QE
Sbjct: 1 MSIVENITVIKNEIADAALRAGRQPNEVKIIAVTKNVAAAKAQEAVRAGLTDLGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ + + IG LQSNKV IV D+I ++ R A + + + L
Sbjct: 61 LQNKFSEVT---GARWHLIGHLQSNKVKYIVDKVDLIHSLDRWSLALEIDRRAREAGKVL 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ N+ KDFV + + GLM I P + +P+ + ++
Sbjct: 118 SALVQVNVAKETTKFGLYVNEVKDFVTEAATLRGIYIRGLMTIAPLVQDPEEVRPVFRQL 177
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGMT D+ +A+ GAT VRIG+ IFG R
Sbjct: 178 RQIAEDLKEIPGIKMEHLSMGMTNDYRIAVEEGATMVRIGTAIFGRR 224
>gi|296534868|ref|ZP_06897198.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
49957]
gi|296264804|gb|EFH11099.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
49957]
Length = 269
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 99/218 (45%), Positives = 136/218 (62%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L+ + +I ++A A RP SV LVAVSK + + AL+ GQ +F EN++QEA
Sbjct: 49 SIADNLKRIQDRIASAAARAGRPAGSVRLVAVSKFHPADSVAEALAAGQALFGENRVQEA 108
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++L IG+LQ+NK + V + DVIE++ R K A+ L+ M +++R
Sbjct: 109 AGKFPGLRAAHPDLRLHLIGALQTNKARDAVRIADVIESLDRPKLAAALAEAMRREARRP 168
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+GI P DFV CR+ + L VEGLMCIPPA +P PHF +
Sbjct: 169 GLLVQVNIGREPQKAGIDPESLADFVAECREAHGLPVEGLMCIPPAEADPAPHFAAMQAA 228
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DFE AIA GAT VR+G+ IFGER
Sbjct: 229 AARLGLATLSMGMSGDFEAAIAHGATHVRVGTAIFGER 266
>gi|90421806|ref|YP_530176.1| hypothetical protein RPC_0282 [Rhodopseudomonas palustris BisB18]
gi|90103820|gb|ABD85857.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB18]
Length = 219
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 98/219 (44%), Positives = 130/219 (59%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L +++I + A R + +V+L+AVSK ++ I L GQ +F EN++QE
Sbjct: 1 MSEAAGLAEVERQIARACADAGRERAAVTLIAVSKTFEADGITPVLEAGQRVFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK KW V L IG LQSNK E V+LFD I +V R L+ E+ Q R
Sbjct: 61 AKGKWPALTAAYPGVALHLIGPLQSNKAKEAVALFDAIHSVDRPSLCQALAKEIAAQGRA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +++Q+NTG E QK+G++P + F+ CR Y LNV GLMCIPP P PHF L ++
Sbjct: 121 VELFVQLNTGEEPQKAGVVPAEADAFIKACRDTYGLNVSGLMCIPPVDQAPAPHFALTAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L KLSMGM+ DF +AI GAT VR+GS IFG R
Sbjct: 181 IAARNGLQKLSMGMSADFAVAIQFGATHVRVGSAIFGHR 219
>gi|119946661|ref|YP_944341.1| alanine racemase domain-containing protein [Psychromonas ingrahamii
37]
gi|119865265|gb|ABM04742.1| alanine racemase domain protein [Psychromonas ingrahamii 37]
Length = 232
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ K++ +Q I +A A R D + L+AVSK I+ A G F EN +QE+
Sbjct: 3 NISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQES 62
Query: 62 KKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K ++ + D + FIG LQSNK + FD +++V R K A L+ +
Sbjct: 63 IEKIQQIKLDTDFEQAVFWYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPDHL 122
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V +QVN E KSG Q + +L + G+M IP +
Sbjct: 123 PKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRLTLRGIMAIPEKTDDQLRLEKQF 182
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ ++ LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 183 NELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSR 231
>gi|325205158|gb|ADZ00611.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M04-240196]
Length = 234
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQVGRDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AIA GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIACGATHVRIGSAIFGKR 227
>gi|254976212|ref|ZP_05272684.1| putative alanine racemase [Clostridium difficile QCD-66c26]
gi|255093599|ref|ZP_05323077.1| putative alanine racemase [Clostridium difficile CIP 107932]
gi|255101787|ref|ZP_05330764.1| putative alanine racemase [Clostridium difficile QCD-63q42]
gi|255307655|ref|ZP_05351826.1| putative alanine racemase [Clostridium difficile ATCC 43255]
gi|255315347|ref|ZP_05356930.1| putative alanine racemase [Clostridium difficile QCD-76w55]
gi|255518012|ref|ZP_05385688.1| putative alanine racemase [Clostridium difficile QCD-97b34]
gi|255651128|ref|ZP_05398030.1| putative alanine racemase [Clostridium difficile QCD-37x79]
gi|260684194|ref|YP_003215479.1| putative alanine racemase [Clostridium difficile CD196]
gi|260687853|ref|YP_003218987.1| putative alanine racemase [Clostridium difficile R20291]
gi|260210357|emb|CBA64716.1| putative alanine racemase [Clostridium difficile CD196]
gi|260213870|emb|CBE05885.1| putative alanine racemase [Clostridium difficile R20291]
Length = 234
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 3 SIKDNLSEIRNKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 63 ARKYDIIGDKLN--WHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ + DFV + + ++GLM + P + + + +
Sbjct: 121 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 180
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 181 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNYN 232
>gi|308799451|ref|XP_003074506.1| alanine racemase family protein (ISS) [Ostreococcus tauri]
gi|116000677|emb|CAL50357.1| alanine racemase family protein (ISS) [Ostreococcus tauri]
Length = 236
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 16/235 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + Q++ ++ + R SV +VAVSK S ++ G F EN +QE
Sbjct: 1 MSVSRNIADVLQRVASACARSGRDGGSVRVVAVSKTKPSDAVKACYDAGHRSFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----KQ 116
DV+ F+G LQSNK ++ + + + L + ++
Sbjct: 61 LID--KAPTLPDDVRWHFVGHLQSNKAKALLEGVPSLAMLETIDSEKLANKVNNAVPERR 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V +QVNT E K G P K + +L GLM I +P +
Sbjct: 119 ANALDVMVQVNTSGEESKHGCEPADAVKLARHIVDNCPRLRFAGLMTIGMPDYTSRPECF 178
Query: 176 LL-----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ E L + LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 179 ETLVECRRQVCAELGLDESACELSMGMSGDFEQAIEMGSTNVRVGSTIFGAREYP 233
>gi|167765522|ref|ZP_02437586.1| hypothetical protein CLOSS21_00016 [Clostridium sp. SS2/1]
gi|317498473|ref|ZP_07956767.1| alanine racemase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167712707|gb|EDS23286.1| hypothetical protein CLOSS21_00016 [Clostridium sp. SS2/1]
gi|291558990|emb|CBL37790.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SSC/2]
gi|316894166|gb|EFV16354.1| alanine racemase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 231
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K+ +E + R V+++AVSK + + + F ENK+QE +
Sbjct: 2 LIERYNEVKKHVEEACKRVGRDPREVTVIAVSKTKPLEMVEELRKEKVLDFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL-P 121
K+ W V+ IG LQ+NK+ IV +I +V K A + E K P
Sbjct: 62 DKYA--NISWPVRWHLIGHLQTNKIKYIVDKVALIHSVDSIKLAQAIDKEAAKHDVKEVP 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQVN +E K G+ P D V + ++GLM I P + +P+ + +
Sbjct: 120 ILIQVNFAHEDTKFGLNPEDVFDVVKEISALEHVKIKGLMQIAPFVDDPEDNRKYFRAMK 179
Query: 181 ----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+E+A+ GAT VR+G+ IFGER
Sbjct: 180 QLSVDINNKNFDNVDMSILSMGMTNDYEIAVEEGATMVRVGTAIFGERNYN 230
>gi|322513925|ref|ZP_08067002.1| YggS family pyridoxal phosphate enzyme [Actinobacillus ureae ATCC
25976]
gi|322120260|gb|EFX92213.1| YggS family pyridoxal phosphate enzyme [Actinobacillus ureae ATCC
25976]
Length = 231
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ + R +V L+AVSK + I A+S GQ F EN +QE
Sbjct: 1 MSISQNLSQINQQIQQISQQFNRT--NVRLLAVSKTKPVEAIEEAISAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLNAQCPENKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQ+N E KSGI P + Q L + GLM IP K + +
Sbjct: 119 NVLIQINISDEASKSGIQPEGLDELAKAISQLPNLRLRGLMAIPKPESEAEQQKIALHKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + LSMGM+ D + AI G+T VRIG+ IFG R T
Sbjct: 179 QQLFDRLQAEFEGIDTLSMGMSDDIQSAIECGSTMVRIGTAIFGARDYST 228
>gi|146296912|ref|YP_001180683.1| alanine racemase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410488|gb|ABP67492.1| alanine racemase domain protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 233
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +++IE + + + R V L+ +K VD IR+A G IF EN++QE
Sbjct: 7 LKKNIEEIQERIEKACLRSGRKSSEVKLLGATKGVDINTIRLANELGIKIFGENRVQEFL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + + FIG LQ+NK+ I +I ++ + + L K ++ + V
Sbjct: 67 PKYNELPQL---EWHFIGRLQTNKIKYIYDKVLLIHSIEKVEQIQELEKRCSKAAKKIDV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN G E K G++P+ ++ + + +N++G M IPP + K ++
Sbjct: 124 LIEVNVGGEESKGGVLPDNVEELIENICECKHVNLKGFMTIPPIEDDEKKLRQYFRKMKE 183
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K+ LSMGM+ DFE+AI GAT VRIG+ +FGERP
Sbjct: 184 IFENYKKLNYNNVKIEVLSMGMSNDFEVAIEEGATLVRIGTKLFGERP 231
>gi|222529335|ref|YP_002573217.1| alanine racemase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456182|gb|ACM60444.1| alanine racemase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 233
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLRIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L + FIG LQ+NK+ I +I +V + L K +
Sbjct: 66 LPKFQELPYL---EWHFIGRLQTNKIKYIYDKVSLIHSVDSPQQIDELEKRCAKAGKACN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V I++N G E K G+ + D + + ++G M IPP + +F +
Sbjct: 123 VLIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDEMKLRVYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPKK 233
>gi|148555765|ref|YP_001263347.1| alanine racemase domain-containing protein [Sphingomonas wittichii
RW1]
gi|148500955|gb|ABQ69209.1| alanine racemase domain protein [Sphingomonas wittichii RW1]
Length = 221
Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 125/213 (58%), Gaps = 1/213 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + +I+++A LA R ++ L+A+SK ++ I ++ GQ+ F EN++QEA+ KW
Sbjct: 10 RLADIRARIDHAAALADRDPAAIELIAISKTKPAEAIAPLIAAGQIGFGENRVQEAETKW 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ ++L +G LQSNK E V+LFD I +V R L+ M R +IQ
Sbjct: 70 PALREGPSLRLHLVGQLQSNKAKEAVALFDAIHSVDRPSLIEALAKAMDGARRRPDCFIQ 129
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G ++ ++ + L V GLM +PPA P P+F LL+++A+
Sbjct: 130 VNIGAEEQKGGCAIDEL-PAILARARDAGLPVAGLMAVPPADVEPAPYFALLAKLAKRHG 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE A+ GAT VRIG+ +FG R
Sbjct: 189 LAGLSMGMSGDFETAVMLGATHVRIGTALFGPR 221
>gi|148251792|ref|YP_001236377.1| hypothetical protein BBta_0174 [Bradyrhizobium sp. BTAi1]
gi|146403965|gb|ABQ32471.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 228
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 96/213 (45%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + AKR + SV+L+AVSK + I ++ GQ +F EN++QEAK KW
Sbjct: 16 LTAVEQEILRACRDAKRERASVTLIAVSKTFAADAIEPVIAAGQRVFGENRVQEAKGKWP 75
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + L IG LQSNK E V+LFD I +V R + L+ E+ Q+R +++Q
Sbjct: 76 ALMAAHPGLSLHLIGPLQSNKAKEAVALFDAIHSVDRPSLCAALAKEIAAQNRHPQLFVQ 135
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI P + FV CR+ Y L + GLMCIPP P PHF L ++IA
Sbjct: 136 INTGEEPQKAGIAPGEADAFVAACRKDYGLEISGLMCIPPVDEAPGPHFALTAKIAARNG 195
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 196 LANLSMGMSADFATAIQFGATHVRVGSAIFGHR 228
>gi|90415261|ref|ZP_01223195.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
HTCC2207]
gi|90332584|gb|EAS47754.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
HTCC2207]
Length = 257
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N + ++I+ SA R + + L+AVSK ++ IR A+ G FAEN LQEA
Sbjct: 30 IENNIAGVSKRIDQSAAECGRDPNDILLLAVSKTRSAEYIRQAMDAGLSHFAENYLQEAL 89
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + ++ FIG LQSNK F + +V R K A LS + + L +
Sbjct: 90 EKIAE-LEGENLCWHFIGPLQSNKTRNAAENFSWVHSVDRLKIAQRLSDQRPESLGPLNI 148
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E KSG + + + + L + GLM IP A + + +++A
Sbjct: 149 CLQVNIDNEPSKSGFLVDALLPIALQIAKLPNLRLRGLMAIPRATNSVQEQQAAFNKLAE 208
Query: 183 EC-----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C KL LSMGM+ D E AI+ G+T VR+G+ IFG+R
Sbjct: 209 LCQQINQSLDNSEKLDTLSMGMSGDLEAAISQGSTMVRVGTDIFGKR 255
>gi|144900382|emb|CAM77246.1| Protein of unknown function UPF0001 [Magnetospirillum
gryphiswaldense MSR-1]
Length = 223
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 97/207 (46%), Positives = 134/207 (64%), Gaps = 1/207 (0%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEW 72
++ + A R +V+LVAVSK DS IR L G +F EN++QEAK KW +
Sbjct: 15 MDQAEREAGRATGAVTLVAVSKTHDSDAIRPFLQAGLRVFGENRVQEAKTKWPELKQDFP 74
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+L IG LQ+NKV + V+LFDVIET+ R K A +++ E+ + +QVN G E
Sbjct: 75 QTELHLIGPLQTNKVRDAVALFDVIETIDRPKLARVVADEIQRLGHGPRCLVQVNIGREA 134
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
QK+GI P+QT V LCR++Y L + GLMCIPPA G+P PHF L+E+A++ L ++SMG
Sbjct: 135 QKAGIDPDQTAALVDLCRREYGLTISGLMCIPPAEGDPVPHFRRLAELAKDLGLAEISMG 194
Query: 193 MTRDFELAIASGATSVRIGSGIFGERP 219
M+ DF AIA GAT +R+GS +FG+R
Sbjct: 195 MSGDFPAAIACGATHIRVGSALFGQRD 221
>gi|163739855|ref|ZP_02147262.1| hypothetical protein RGBS107_05389 [Phaeobacter gallaeciensis
BS107]
gi|161386889|gb|EDQ11251.1| hypothetical protein RGBS107_05389 [Phaeobacter gallaeciensis
BS107]
Length = 218
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 92/221 (41%), Positives = 124/221 (56%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + +I + A RPK S L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MSIQD----IQARIHIAEENAGRPKGSAKLIAVSKVQPNERVEAVLEEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW + D+ L IG LQSNK + + LF I T+ R K A L+ +
Sbjct: 57 AAGKWPDFAMRYSDLDLHLIGPLQSNKARQAMELFQSIHTLDRSKLAKALARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+GI P F+ C+ L +EGLMCIPPA P HF LL +
Sbjct: 117 PKLFVQVNTGEEPQKAGIPPRAADAFIRECQDM-DLIIEGLMCIPPADEEPSLHFSLLGK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L+ LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 176 IAVRNGLSGLSMGMSGDFETAVALGATHVRVGSAIFGARAY 216
>gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
gi|300075882|gb|ADJ65281.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
Length = 233
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 82/230 (35%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A A RP +V L+AVSK + + A+ GQ F EN LQEA
Sbjct: 3 SIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEA 62
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + +Q FIG +QSNK I FD + +V R K A LS +
Sbjct: 63 LEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAALG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN E KSG+ P + Q L + GLM IP + +
Sbjct: 123 ALNVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAAFA 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A+ L LSMGM+ D + A+A GA+ VRIGS IFG R
Sbjct: 183 AVRSLLAQLQAQGLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGARHY 232
>gi|257095145|ref|YP_003168786.1| alanine racemase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047669|gb|ACV36857.1| alanine racemase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 229
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L KLQ +I +A R V L+AVSK ++ +R A + GQ F E+ LQE
Sbjct: 3 TLPAKLQAVLARIACAARRWGRDPADVLLLAVSKTWPAECLREAAAAGQRAFGESYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + ++ FIG+LQ+NK + FD + ++ R + A LS + L
Sbjct: 63 IDKVAE-LRAMGLEWHFIGTLQANKTRPVAETFDWVHSLDRLRVAERLSAQRPLSLPSLS 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V +QVN E K G+ P + + +L + GLM IP + + F L
Sbjct: 122 VCLQVNVSGEASKGGVSPAEAPALAHAVARLPKLRLRGLMAIPAPSDDFVEQRRPFRRLR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E++ + + L LSMGM++D E AIA G+T VR+G+ IFGER
Sbjct: 182 ELSEQLRADGLVLDTLSMGMSQDLEAAIAEGSTLVRVGTAIFGER 226
>gi|145589964|ref|YP_001156561.1| alanine racemase domain-containing protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048370|gb|ABP34997.1| alanine racemase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 241
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/240 (31%), Positives = 106/240 (44%), Gaps = 18/240 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L +++IE + + AKR + V L+AVSK + + A+ GQ F EN +Q
Sbjct: 1 MNQIAMNLVQVQERIELAVLAAKREPEEVELLAVSKTFPAAAVEEAMHAGQSAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSR--EKTASLLSLEMIKQ 116
EA +K + L K FIG LQSNK E+ FD + +V R +
Sbjct: 61 EAVEKILKLSKLRPWLTWHFIGPLQSNKTREVAEHFDWVHSVDRLKIAERLSTQRGEFSE 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + +QVN E KSGI + + Q + + GLM IP NP
Sbjct: 121 LAPLQLCVQVNVSEEESKSGIALTEAETLCNAISQLPHVVLRGLMAIPAPTDNPAAQREA 180
Query: 177 L---SEIARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGM+ D E AIA G+T VR+G+ IFG+R T
Sbjct: 181 FATVRACFERIRDTHTIEPGFQFFDTLSMGMSDDLEAAIAEGSTMVRVGTAIFGKRDKIT 240
>gi|153008428|ref|YP_001369643.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151560316|gb|ABS13814.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 250
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 114/222 (51%), Positives = 151/222 (68%), Gaps = 2/222 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I N+ A+R K SV+LVAVSK D+++IR L GQ +F EN++Q
Sbjct: 25 MSDIVANLNTVKAAIANAEEEAQRDKASVTLVAVSKTFDAEEIRPVLDAGQRVFGENRVQ 84
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW ++L IG LQSNK ++ V+LFDVIETV REK A+ L++E+ KQ++
Sbjct: 85 EAQAKWPGLRDDYSGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALAVEIKKQNK 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 145 APKLYVQVNTGLEEQKAGIAPKEAVAFVERCRKEHGLAIEGLMCIPPADENPGPHFALLE 204
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ARE ++ KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 205 KLAREAQVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRSY 246
>gi|315122023|ref|YP_004062512.1| hypothetical protein CKC_01365 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495425|gb|ADR52024.1| hypothetical protein CKC_01365 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 222
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 169/221 (76%), Positives = 192/221 (86%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +KLQ FKQKI +LAKR K SVSLVAVSKMVD + I+ ALSCGQ+IFAE+KLQE
Sbjct: 1 MSLEHKLQAFKQKIAYHEMLAKRLKGSVSLVAVSKMVDIQTIQSALSCGQIIFAESKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+KKW LRKEWD+QLRFIGSLQSNK+SEIVS FDVIETV REK ASLLS+EM KQ FL
Sbjct: 61 AQKKWSFLRKEWDIQLRFIGSLQSNKISEIVSFFDVIETVDREKIASLLSIEMEKQKCFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P+YIQVNTG E QKSG+MPN+TKDF++LCRQKY+LNVEGLMCIPP NP PHF LLS+I
Sbjct: 121 PIYIQVNTGCEKQKSGVMPNETKDFIVLCRQKYRLNVEGLMCIPPVTSNPGPHFCLLSKI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A+EC++TKLSMGMT+D++LAIA GATSVRIGSGIFGER Q
Sbjct: 181 AKECEITKLSMGMTKDYDLAIAFGATSVRIGSGIFGERSYQ 221
>gi|322420078|ref|YP_004199301.1| alanine racemase domain-containing protein [Geobacter sp. M18]
gi|320126465|gb|ADW14025.1| alanine racemase domain protein [Geobacter sp. M18]
Length = 231
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 111/229 (48%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ +++I +A+ A R SV LVAVSK + I A +CGQ IF EN +QE
Sbjct: 4 MAERLRKIEERIAQAALRAGRDPQSVRLVAVSKTKPAAAIADAFACGQRIFGENYVQELV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ FIGSLQSNKV +I D+I +V R A + + + +
Sbjct: 64 GKQGE--LTQEISWHFIGSLQSNKVRQIAGRVDLIHSVDRSSLAREIDRQWGALGKVCDI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E K G + D V Q L V GLM +PP +P+ +
Sbjct: 122 LVQVNISREETKGGTSSEELLDLVREVAQLQHLRVRGLMTMPPFFDDPEGARPYFRRLRE 181
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +LSMGM+ DFE AI GAT VR+GS +FGER
Sbjct: 182 LAGEVAAAAIAGVEMRELSMGMSGDFEAAIEEGATLVRVGSALFGERQY 230
>gi|146284278|ref|YP_001174431.1| TIM-barrel fold family protein [Pseudomonas stutzeri A1501]
gi|145572483|gb|ABP81589.1| predicted enzyme with a TIM-barrel fold [Pseudomonas stutzeri
A1501]
Length = 229
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/226 (35%), Positives = 108/226 (47%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A R +V L+AVSK + IR A + G F EN LQ
Sbjct: 1 MSTIEKNIAKVGARIREAAQAVGREPATVGLLAVSKTQPAAAIRDAFAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALDKQAELDDL-PLTWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSDQRPEALPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + +QVN E KSG P + + +L + GLMCIP +P F
Sbjct: 120 LNICLQVNVSGEASKSGCAPQEVQQLARAITALPRLRLRGLMCIPAPSEDPAEQRAAFAR 179
Query: 177 LSEIAREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L ++ E L LSMGM++D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRQLRDELALDLDTLSMGMSQDLEAAIAEGATWVRIGTALFGARDY 225
>gi|305681060|ref|ZP_07403867.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
matruchotii ATCC 14266]
gi|305659265|gb|EFM48765.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
matruchotii ATCC 14266]
Length = 246
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 107/228 (46%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
Q ++I N+A A R + L+AVSK +A G + EN+ QE +
Sbjct: 14 RANYQAVTERIANAAHAAGRDPADIRLIAVSKTFPISHALLAAEAGMTVLGENRPQELAE 73
Query: 64 KWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R DV IG LQ NK EI + + A L + +R L V
Sbjct: 74 KAQAFRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLELANRTLDV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+IQVNT +E QKSG P++ + +L+V GLM + P +P F L
Sbjct: 134 FIQVNTSHESQKSGFAPDKVAAILPSLATLDRLHVRGLMTMAAFSPEESVVRPSFEQLRT 193
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + LT+LSMGMT DFE AIA GATSVRIG+ IFG RP
Sbjct: 194 LRDRLQPDAPDGMSLTELSMGMTGDFEWAIAEGATSVRIGTAIFGHRP 241
>gi|159042598|ref|YP_001531392.1| alanine racemase domain-containing protein [Dinoroseobacter shibae
DFL 12]
gi|157910358|gb|ABV91791.1| alanine racemase domain protein [Dinoroseobacter shibae DFL 12]
Length = 218
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 87/211 (41%), Positives = 124/211 (58%), Gaps = 2/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+I +A A R ++L+AVSK+ ++ L+ G ++ EN++QEA+ KW
Sbjct: 5 EITARIGAAARKAGRDPAEITLIAVSKVQPLDRVEAVLAEGHRVYGENRVQEAQGKWPAF 64
Query: 69 RKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
R+++ + L IG LQSNK V LFD I TV R K A L+ ++ + +++QVN
Sbjct: 65 REKYSGIDLHLIGPLQSNKTRPAVELFDAIHTVDRAKLARRLADHAQERGQSPDIFVQVN 124
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+G ++ V CR L ++GLMCIPP P HF LL+++A LT
Sbjct: 125 TGDETQKAGCALSEVDALVTECRA-LDLPLKGLMCIPPIDEEPSLHFALLAKLAARNGLT 183
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE AIA GAT +R+GS IFG+R
Sbjct: 184 GLSMGMSGDFESAIAQGATHIRVGSAIFGDR 214
>gi|296134835|ref|YP_003642077.1| alanine racemase domain protein [Thiomonas intermedia K12]
gi|295794957|gb|ADG29747.1| alanine racemase domain protein [Thiomonas intermedia K12]
Length = 243
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+I +A A R SV+L+AVSK ++ + + GQ F EN +QEA
Sbjct: 11 LAHPLSAVRQRIAQAAAAAGRDPRSVTLLAVSKTFPAQDVAQLAALGQTAFGENYVQEAV 70
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR +W Q FIG LQSNK ++ FD + ++ R K A LS + + L
Sbjct: 71 DKIAALRPDWPALQWHFIGPLQSNKTRDVAEHFDWVHSIDRLKLAQRLSDQRPAELEPLQ 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN E KSG+ P +L + GLMCIP + + F L
Sbjct: 131 VCIQVNVDGETTKSGVRPEDASALAAAVAALPRLRLRGLMCIPEPRADAAAQRAPFARLR 190
Query: 179 EIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ L LSMGM+ D E AI GAT VR+GS IFG RP
Sbjct: 191 ELRDAIAAEHGLTLDTLSMGMSADLEAAILEGATIVRVGSAIFGARPA 238
>gi|192288719|ref|YP_001989324.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
gi|192282468|gb|ACE98848.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 219
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKE 71
+I + A+R + V+L+AVSK +++ IR LS GQ +F EN++QEAK KW + +
Sbjct: 13 EIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEY 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + V LF I +V R+ LS + + R + +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P F++ CR+++ L + GLMCIPP P PHF L ++IA+ L KLSM
Sbjct: 133 PQKAGIAPQDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALCAKIAKRNGLAKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF AI GAT VR+GS IFG R
Sbjct: 193 GMSADFATAIQFGATHVRVGSAIFGHR 219
>gi|307546704|ref|YP_003899183.1| hypothetical protein HELO_4114 [Halomonas elongata DSM 2581]
gi|307218728|emb|CBV43998.1| K06997 [Halomonas elongata DSM 2581]
Length = 234
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 101/231 (43%), Gaps = 13/231 (5%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+ L L ++++ + A RP D L+AVSK + IR A GQ F EN
Sbjct: 1 MTDPALSESLTAVRERLAAALHAAGRPDDDARLLAVSKTKPAAMIREAWRLGQREFGENY 60
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QEA K L D+ FIG LQSNK + F I +V RE+ A L +
Sbjct: 61 VQEALDKQAELADLDDIVWHFIGPLQSNKSRIVAEHFAWIHSVDRERLARRLDAQRPASL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V +QVN E KSGI + L + GLM IP +P
Sbjct: 121 GPLNVCLQVNISDEASKSGISLAELPALAEAVHGLPNLRLRGLMAIPAPCADPDEQRRPF 180
Query: 178 SEIARECK----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 181 IRLREALESLRTRLPEAPLDTLSMGMSDDLEAAVMEGATLVRLGTAIFGAR 231
>gi|84515047|ref|ZP_01002410.1| alanine racemase domain protein [Loktanella vestfoldensis SKA53]
gi|84511206|gb|EAQ07660.1| alanine racemase domain protein [Loktanella vestfoldensis SKA53]
Length = 217
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A RP V+L+AVSK+ + ++ L G +F ENK+QEA KW
Sbjct: 3 LADIQDRIAAACAKAGRPLQDVTLIAVSKVQPNARVAAVLDQGHRVFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ +D + L IG LQ+NK V L I T+ R K A +L+ + +++Q
Sbjct: 63 MFRESYDGIALHLIGPLQTNKAKAAVELAQAIHTLDRPKLAQVLARLAQESGACPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV R L + GLMCIPP P HF LL+++A
Sbjct: 123 VNTGEEPQKAGVLPADVDAFVAEARA-LDLPIAGLMCIPPVDEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA GAT VRIG+ IFGER
Sbjct: 182 LTGLSMGMSGDFESAIALGATHVRIGAAIFGER 214
>gi|307824924|ref|ZP_07655146.1| alanine racemase domain protein [Methylobacter tundripaludum SV96]
gi|307733971|gb|EFO04826.1| alanine racemase domain protein [Methylobacter tundripaludum SV96]
Length = 227
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 7/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ + +I ++ + R SV L+AVSK S+ I A GQ F EN LQEA
Sbjct: 3 TITERLKHIRSQISDAELACNRQPGSVLLLAVSKTKPSEDIAAAYQSGQRHFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + FIG +QSNK + + FD + +V K A LS + L
Sbjct: 63 LRKQQE-LGAYAITWHFIGPIQSNKTRPLATHFDWVHSVDSLKIAKRLSEQRPAHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSGI + + L + G+M IP + + +
Sbjct: 122 ICLQVNISNEPSKSGITLAELPQLCEQIAKLPNLKLRGVMAIPAPQDDFEQQRQPYKALY 181
Query: 182 R------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +L S GMT D + AIA G+T VRIG+ +FGER
Sbjct: 182 QAVAKLGQAELDTFSFGMTGDLKAAIAEGSTIVRIGTALFGERNY 226
>gi|299133185|ref|ZP_07026380.1| alanine racemase domain protein [Afipia sp. 1NLS2]
gi|298593322|gb|EFI53522.1| alanine racemase domain protein [Afipia sp. 1NLS2]
Length = 229
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 94/215 (43%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L +Q+I + A+R + SV L+AVSK D+ I +S GQ +F EN++QEAK K
Sbjct: 15 EGLASVEQEILRACADARRDRASVELIAVSKTFDAAAISPVISAGQRVFGENRVQEAKAK 74
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W + ++L IG LQSNK E V LFD I +V R LS E+ + R ++
Sbjct: 75 WPELMAATPGLRLHLIGPLQSNKAREAVMLFDAIHSVDRPSICEALSKEIKSRERNPLLF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
Q+NTG E QK+G++P + F+ CR +Y L + GLMCIPP P PHF L ++IA+
Sbjct: 135 AQINTGEESQKAGVIPQEADSFLAACRDRYGLTISGLMCIPPVDEAPAPHFALTAKIAKR 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF +AI GAT +R+GS IFG R
Sbjct: 195 NGLKLLSMGMSADFAVAIQFGATHIRVGSAIFGHR 229
>gi|322436846|ref|YP_004219058.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX9]
gi|321164573|gb|ADW70278.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX9]
Length = 235
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 109/234 (46%), Gaps = 12/234 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +I + A R V+L+AVSKM + A + GQ +F EN++QE
Sbjct: 1 MSIAENLAHLHDQILAACARANRNPADVALMAVSKMHPVDLLLEAHAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D+ + IG LQSNK + LF I+TV K A L+ + L
Sbjct: 61 WQGKSEIAGTLEDLDMHLIGPLQSNKSTRAAELFHSIDTVDSLKLAQRLNAAAGALGKKL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-------GNPKPH 173
P+YI+V E K G+ P + L GLM +PP +P+
Sbjct: 121 PIYIEVKLSPEESKHGLAPADLPALIEALPSLTHLRPTGLMTVPPWPADIAQAGDEARPY 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L + + + LT LS+GM+ DF AI G+T +RIG+ IFG+R +
Sbjct: 181 FRELRRLRDQSQRTIPTLTGLSIGMSNDFAAAIEEGSTCIRIGTAIFGKRAPAS 234
>gi|332531595|ref|ZP_08407492.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
gi|332038958|gb|EGI75387.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
Length = 255
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK + +R A G F EN +QEA K
Sbjct: 15 LRAVQARINAACDAAGRDPASVRLLAVSKTFGPEAVRAAHQAGLTAFGENYIQEAVAKTA 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L ++ IG +QSNK + F +TV R K A LS + + L + +QV
Sbjct: 75 ALADL-PLEWHCIGPIQSNKTRPVAEHFAWAQTVDRFKIAQRLSEQRPAELPPLQICLQV 133
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARE 183
N K+GI P++ + V+ R+ +L + GLMCIP + + + +
Sbjct: 134 NVDGGPTKAGIAPHELSELVLAVRRLPRLRLRGLMCIPDPQPDAAAMQAVFARARTLFDD 193
Query: 184 CKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LSMGM+ D E AIA+G+T VRIGS +FG RP
Sbjct: 194 LRAGWDGPDPLPDTLSMGMSADLEAAIAAGSTLVRIGSALFGARP 238
>gi|190574835|ref|YP_001972680.1| putative racemase [Stenotrophomonas maltophilia K279a]
gi|190012757|emb|CAQ46386.1| putative racemase [Stenotrophomonas maltophilia K279a]
Length = 257
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLVTVRQRIADACARVGRDPASVRLLPVSKTVDEARIRMAVAAGCHELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAEAMADL-GVHWSVIGHLQTNKARYVARFASEFQALDSLRVAEALQQRLQLEERTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ + FV +L V GLM + P + + F L E
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEAFVQQLPAFDRLRVRGLMTLAIFTPDVERVRACFVRLRE 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDQLQRTAPPDLDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGARATP 245
>gi|262280014|ref|ZP_06057799.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260365|gb|EEY79098.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 235
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I + A+R ++V L+AVSK S+ +R + GQ F EN LQ
Sbjct: 6 MNYLQDARQHVLQQIRRACEHAQRAPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ +++ FIG +Q NK + FD + V R A LS + ++
Sbjct: 66 EALEKIEALQDL-EIEWHFIGHVQRNKTKNLAEKFDWVHGVDRLIIAERLSNQRLQDQSD 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P++ V Q ++ + GLM IP
Sbjct: 125 LNICLQVNIDGQDSKDGCAPDEVAALVAQISQLPKIRLRGLMVIPAPDNTAAFADA--KR 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 LFDEVKEKHAHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|328907236|gb|EGG27002.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium sp. P08]
Length = 238
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 12/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ N + + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSVANNVAAVRTRIDDACQACDRDPGEVSLLPVSKTKPPSMVDEAYQAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + + ++ IG LQ+NK + + + K A L + ++
Sbjct: 61 ALAKSELMDADHPGLEWAIIGGLQTNKAKYVARFAAEFQALDSLKVAHELDKRLQQEGHQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L V +QVN+ E QKSGI P++ +F L+V GLM + + +
Sbjct: 121 LRVLVQVNSSAEPQKSGIAPDEAVEFARELAAFDSLDVRGLMTVALNSPDQQAVADCFDL 180
Query: 178 -----SEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +E ++LSMGM+ D E+AIA G+T VRIG+ IFG R
Sbjct: 181 VAATQEKLRQEAGDISSWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDP 232
>gi|259909615|ref|YP_002649971.1| hypothetical protein EpC_29900 [Erwinia pyrifoliae Ep1/96]
gi|224965237|emb|CAX56769.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
Length = 237
Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKTASAIEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 V-DKIQLLANPSLVWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSQQRPDTLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + + +L + GLM IP N + ++A
Sbjct: 122 VLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDSQLAVCQQMA 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARD 227
>gi|167630158|ref|YP_001680657.1| hypothetical protein HM1_2089 [Heliobacterium modesticaldum Ice1]
gi|167592898|gb|ABZ84646.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 229
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++A+ A R +++ L+AV+K V ++I+ + G + EN++QE
Sbjct: 4 LQENLGRVRQRIRDAAMRAGREPEAIRLLAVTKTVPVEQIQEVVDAGVDLLGENRVQELL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K +R V+ IG+LQ+NKV I D+I ++ R A ++ + R +
Sbjct: 64 AKHRQVRGS--VRWHMIGTLQTNKVKYIYDKVDLIHSLDRLSLAQAINRYAARLGRPIDC 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G+ F+ +++ GLM + P + +P+ ++
Sbjct: 122 LVEVNVAGEKSKHGVDRRDLISFIRDVTAFEGIHIRGLMTMAPYVDDPEETRPFFRDLYH 181
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ DFE+A+ GAT VRIGS +FG R
Sbjct: 182 LSREVDELGLQRVEMRHLSMGMSNDFEVAVEEGATIVRIGSSLFGGR 228
>gi|148359586|ref|YP_001250793.1| pyridoxal-5'-phosphate dependent enzyme family transporter protein
[Legionella pneumophila str. Corby]
gi|148281359|gb|ABQ55447.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila str. Corby]
Length = 231
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALKDL-PICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|86136920|ref|ZP_01055498.1| alanine racemase domain protein [Roseobacter sp. MED193]
gi|85826244|gb|EAQ46441.1| alanine racemase domain protein [Roseobacter sp. MED193]
Length = 219
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ K +I + A RP SV+L+AVSK+ + ++ L GQ F EN++QE
Sbjct: 1 MS----LQEIKTRITAAEAAADRPAGSVTLIAVSKVQPNDRVAAVLDEGQRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW + + D+ L IG LQ+NK + + LF+ I TV R K A L+ + +
Sbjct: 57 ALGKWPDFAETYTDLDLHLIGPLQTNKARQAMELFNAIHTVDRPKLAKTLARLAQELGKC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQ+NTG E QK+GI+P + DF+ CR L V+GLMCIPP HF +L+E
Sbjct: 117 PDLFIQINTGAEPQKAGILPAEADDFIAECRT-LDLPVKGLMCIPPVDEVAAKHFTMLAE 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 176 MATRNGLDGLSMGMSSDFEQAIAHGATHVRVGSAIFGARAY 216
>gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
gi|300072627|gb|ADJ62026.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
Length = 270
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 102/226 (45%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L ++I + A RP SV L+ VSK IR+A + G + ENK QEA
Sbjct: 32 RANLAAVHRRIAAACERAGRPASSVRLLPVSKTKPESSIRLAYAAGCCLLGENKPQEACH 91
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW + +Q IG LQ+NK + + + + A L + ++ R L V+
Sbjct: 92 KWEATQDLSGLQWSVIGHLQTNKAKLVARFAAEFQALDSLRVAQALERRLQQEGRGLDVF 151
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNT E K G+ P + F+ L + GLM + +P S +
Sbjct: 152 VQVNTSGEASKYGLAPEEVAPFLRQLHAYPALRLRGLMTLAVFSPDPARVRPCFSLLRNL 211
Query: 184 -----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L +LSMGM+ D+E+AI GAT VR+G +FG R
Sbjct: 212 RERLRQDVPAGAQLDELSMGMSGDYEIAIEEGATVVRVGQALFGAR 257
>gi|157960955|ref|YP_001500989.1| alanine racemase domain-containing protein [Shewanella pealeana
ATCC 700345]
gi|157845955|gb|ABV86454.1| alanine racemase domain protein [Shewanella pealeana ATCC 700345]
Length = 233
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 117/229 (51%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A + R + V L+AVSK + +I A GQ F EN +QE
Sbjct: 3 TITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D++ FIG LQSNK + +LFD + TV REK A L+ + +
Sbjct: 63 ESKVNALSEDYPDIEWHFIGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMPPI 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V IQVN E KSG+ N+ Q L + GLM IP A + + +
Sbjct: 123 NVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLRGLMAIPSADVDEQTATDEMAAL 182
Query: 178 ----SEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++A+ + LS+GM+ D ELA+A G+T VRIGS IFGER
Sbjct: 183 QALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYS 231
>gi|261492832|ref|ZP_05989379.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261494803|ref|ZP_05991281.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261309514|gb|EEY10739.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311514|gb|EEY12670.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 249
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ + +R V L+AVSK + I+ A+ GQ F EN +QE
Sbjct: 23 MSIAENLSQIHQQIQQISQQHQRD--DVRLLAVSKTKPVEAIQEAIEGGQRAFGENYVQE 80
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K D++ FIG LQSNK + + FD I+TV R K A LS + L
Sbjct: 81 AIEKIECFANRSDLEWHFIGPLQSNKTKLVAAHFDWIQTVDRLKIAERLSEQRPIGKAPL 140
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P++ Q L + GLM IP P+ F +
Sbjct: 141 NVLIQINISDEASKSGIEPDEMLSLAQAISQLPNLKLRGLMAIPKPESEPEQQKIAFCKM 200
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D + AI G+T VRIG+ IFG R +
Sbjct: 201 QQLFHRLQAEFEGIDTLSMGMSDDMQAAIECGSTMVRIGTAIFGARDYR 249
>gi|255656599|ref|ZP_05402008.1| putative alanine racemase [Clostridium difficile QCD-23m63]
Length = 234
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 3 SIKDNLSEIRSKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 63 ARKYDIIGNKLN--WHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ + DFV + + ++GLM + P + + + +
Sbjct: 121 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 180
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 181 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNY 231
>gi|213156676|ref|YP_002318337.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
gi|215484383|ref|YP_002326614.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
gi|301345278|ref|ZP_07226019.1| hypothetical protein AbauAB0_03519 [Acinetobacter baumannii AB056]
gi|301510182|ref|ZP_07235419.1| hypothetical protein AbauAB05_01354 [Acinetobacter baumannii AB058]
gi|301595729|ref|ZP_07240737.1| hypothetical protein AbauAB059_07952 [Acinetobacter baumannii
AB059]
gi|332853754|ref|ZP_08434966.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013150]
gi|332871126|ref|ZP_08439724.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013113]
gi|213055836|gb|ACJ40738.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
gi|213987503|gb|ACJ57802.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
gi|332728440|gb|EGJ59815.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013150]
gi|332731712|gb|EGJ62993.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013113]
Length = 230
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHQSERLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 120 LNICLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFVDA--KK 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|304388854|ref|ZP_07370906.1| YggS family pyridoxal phosphate enzyme [Neisseria meningitidis ATCC
13091]
gi|304337188|gb|EFM03370.1| YggS family pyridoxal phosphate enzyme [Neisseria meningitidis ATCC
13091]
Length = 228
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYASGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|39933362|ref|NP_945638.1| hypothetical protein RPA0285 [Rhodopseudomonas palustris CGA009]
gi|39652987|emb|CAE25729.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
CGA009]
Length = 219
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 91/207 (43%), Positives = 131/207 (63%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKE 71
+I ++ A+R + V+L+AVSK +++ IR LS GQ +F EN++QEAK KW + +
Sbjct: 13 EIASACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPVLVDEY 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + ++LFD I +V R+ LS + + R + +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAIALFDAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P F++ CR+++ L + GLMCIPP P PHF L ++IA+ L KLSM
Sbjct: 133 PQKAGIAPQDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALSAKIAKRNGLVKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF AI GAT VR+GS IFG R
Sbjct: 193 GMSADFATAIQFGATHVRVGSAIFGHR 219
>gi|85375194|ref|YP_459256.1| hypothetical protein ELI_11835 [Erythrobacter litoralis HTCC2594]
gi|84788277|gb|ABC64459.1| hypothetical protein ELI_11835 [Erythrobacter litoralis HTCC2594]
Length = 220
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + +A+R +D V+L+AVSK + I L G +F EN++QE K+KW
Sbjct: 8 LEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQEVKEKWP 67
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
DV+L IG LQSNK + V+LFD I ++ R L M K + +P ++Q
Sbjct: 68 ALREAYSDVELHLIGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGKQVPCFLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G P ++ ++ + V GLM IPP P P F LL ++ARE +
Sbjct: 128 VNIGDEDQKGGC-PIGEVPAMLERAREAGIPVVGLMSIPPFDIEPAPFFALLDKLARENE 186
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SMGM+ DFE AI GAT VR+G+ +FG+R
Sbjct: 187 LEARSMGMSSDFETAIMLGATHVRVGTALFGDR 219
>gi|312793527|ref|YP_004026450.1| alanine racemase domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312875958|ref|ZP_07735947.1| alanine racemase domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311797156|gb|EFR13496.1| alanine racemase domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|312180667|gb|ADQ40837.1| alanine racemase domain protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 233
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L + FIG LQ+NK+ I +I ++ + L K +
Sbjct: 66 LPKFQELPYL---EWHFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCTKAGKTCS 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V I++N G E K GI P + + + ++G M IPP + +F +
Sbjct: 123 VLIEINIGGEESKGGINPEKVDHLIEKISNSSHVILKGFMTIPPIEDDDMKLRGYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPKK 233
>gi|189500708|ref|YP_001960178.1| alanine racemase domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189496149|gb|ACE04697.1| alanine racemase domain protein [Chlorobium phaeobacteroides BS1]
Length = 229
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ +I + R ++L+AVSK S +R A GQ E+ +QE
Sbjct: 3 DIAINLKRISDEIRATCNRIGRDPGDITLIAVSKTKSSALVREAFDAGQRDLGESYVQEF 62
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ FIG LQSNKV +IV +I ++ + KTA LS +++
Sbjct: 63 LEKYSSDHLSGLPIRWHFIGHLQSNKVKDIVDKTYLIHSIDKLKTAEELSKLASRKNLTA 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
I+VNT E K G+ P + ++GLM I P + F LL E
Sbjct: 123 DYLIEVNTSGEATKFGLSPETLLLETSRLFTLPNIRLKGLMTIASPDRNKARKEFRLLGE 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LT+LSMGM++DF++AI GAT +RIG+ IFG R
Sbjct: 183 LLEKLRETSPDPSSLTELSMGMSQDFDIAIEEGATIIRIGTAIFGSR 229
>gi|126700237|ref|YP_001089134.1| putative alanine racemase [Clostridium difficile 630]
gi|115251674|emb|CAJ69509.1| putative pyridoxal 5'-phosphate-dependent enzyme [Clostridium
difficile]
Length = 237
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 6 SIKDNLSEIRNKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 66 ARKYDIIGDKLN--WHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ + DFV + + ++GLM + P + + + +
Sbjct: 124 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 183
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 184 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNYN 235
>gi|296107628|ref|YP_003619329.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila 2300/99 Alcoy]
gi|295649530|gb|ADG25377.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila 2300/99 Alcoy]
Length = 231
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALKDL-PICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFG+R
Sbjct: 180 NQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGKR 226
>gi|293609002|ref|ZP_06691305.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829575|gb|EFF87937.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 230
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIQTACEHAQRVPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALEKIEALHDL-DIEWHFIGHVQRNKTKHVAEKFDWVHGVDRLIIAERLSNQRGDDQSA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP
Sbjct: 120 LNICLQVNIDGQDSKDGCAPEDVAELVAQISQLPKIKLRGLMVIPAPDNTAAFADA--KA 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKDQHAHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|54310240|ref|YP_131260.1| TIM-barrel fold family protein [Photobacterium profundum SS9]
gi|46914681|emb|CAG21458.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
SS9]
Length = 244
Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ ++ +I +S R DSV L+AVSK I A++ GQ F EN +QE
Sbjct: 14 SIKQNIEQVISQITSSTEKCGRTADSVQLLAVSKTKPIAAIDDAIAVGQRAFGENYVQEG 73
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ + + ++ FIG +QSNK I FD + +V R KTA L+ +
Sbjct: 74 VEKVQHFAGHAQAEEIVWHFIGPIQSNKTRPIAEHFDWVHSVDRIKTARRLNEQRPSSMA 133
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +QVNT E KSGI L + GLM IP + +
Sbjct: 134 PLNILLQVNTSGEESKSGIHVTDLAALADEIATMPNLVLRGLMSIPQKADSYDSQYAAFK 193
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A + ++ LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 194 LLADAQQQLHIKYPQIDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGARDY 243
>gi|92115728|ref|YP_575457.1| hypothetical protein Nham_0096 [Nitrobacter hamburgensis X14]
gi|91798622|gb|ABE60997.1| Protein of unknown function UPF0001 [Nitrobacter hamburgensis X14]
Length = 225
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A+ + SV+LVAVSK D+ I ++ GQ +F EN++QEA++KW
Sbjct: 13 LASVEAEIVRACRDARCERSSVTLVAVSKTFDTDAIAPVIAAGQQVFGENRVQEAQRKWP 72
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + L IG LQSNK + V LFD I +V R + L+ E+ Q+R +++Q
Sbjct: 73 ELMAAHPGIALHLIGPLQSNKAKDAVGLFDAIHSVDRPSICAALAKEIASQNRRPDLFVQ 132
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G+ P+ F+ CR Y L + GLMCIPPA P PHF L ++IA+
Sbjct: 133 INTGEEPQKAGVAPSDADAFIAACRDTYGLTISGLMCIPPADDAPAPHFALTAKIAKRNG 192
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT+LSMGM+ DF +AIA GAT VR+GS IFG R
Sbjct: 193 LTQLSMGMSADFAIAIALGATHVRVGSAIFGTR 225
>gi|39935862|ref|NP_948138.1| hypothetical protein RPA2795 [Rhodopseudomonas palustris CGA009]
gi|39649716|emb|CAE28237.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
CGA009]
Length = 260
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/223 (32%), Positives = 106/223 (47%), Gaps = 9/223 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + R V L+ V+K V + + A + G F ENKLQEA+ K
Sbjct: 26 NLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLLRAYAAGISEFGENKLQEARDKR 85
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + ++ IG LQ+NKV +V + + A L+ + + R L V++Q
Sbjct: 86 -DILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALDSPRLADELNRRLDAEGRDLDVFVQ 144
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P F+ +L GLM + G + F LL E+
Sbjct: 145 VNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLMTLAIFSAETGRVRGCFRLLRELRD 204
Query: 183 E-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT+LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 205 RAIRVHPDLTELSMGMSGDFEIAIEEGATVVRVGQAIFGARPT 247
>gi|330963808|gb|EGH64068.1| hypothetical protein PSYAC_04056 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 228
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 105/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ AKR SV L+ VSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAKRDPASVGLLGVSKTKPAGDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQLELADL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPAGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|170078522|ref|YP_001735160.1| hypothetical protein SYNPCC7002_A1917 [Synechococcus sp. PCC 7002]
gi|169886191|gb|ACA99904.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7002]
Length = 222
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 23/231 (9%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + +++I V L+AVSK + KIR+A + G F EN+
Sbjct: 1 MSDAIAENIARLREEI----------PPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRF 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA++K L D++ FIG LQ NK + ++ FD I TV A L
Sbjct: 51 QEAQQKQAELEDLPDIRWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLEN 110
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ + K G Q + L ++GLM I P +
Sbjct: 111 PARCCLQIKPLPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLSRTETRTAFK 170
Query: 179 EIA---RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + LT+LSMGM+ D+ LAI +GAT +R+G GIFG R
Sbjct: 171 QIFSLKEQLNQMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGAR 221
>gi|167854570|ref|ZP_02477351.1| hypothetical protein HPS_02299 [Haemophilus parasuis 29755]
gi|167854325|gb|EDS25558.1| hypothetical protein HPS_02299 [Haemophilus parasuis 29755]
Length = 227
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + Q+I+ A RP+ SV L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MSISQNLAIISQQIQQYCQQANRPEQSVKLLAVSKTKPISAIAEAIEAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG LQSNK + FD ++T+ R K A LS + K L
Sbjct: 61 GIEKIQYFAENDTLEWHFIGLLQSNKTRVVAEHFDWVQTIDRLKIAQRLSEQRPKHLPVL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI + + Q +L + GLM IP P+ +
Sbjct: 121 NVLIQINISDEASKSGISAKEMLELATQISQLPRLKLRGLMAIPKPESEPEQQKIALAQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ + + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 181 NELFLQLQSQFEGIDTLSMGMSDDMPSAIECGSTMVRIGTAIFGAR 226
>gi|85060005|ref|YP_455707.1| hypothetical protein SG2027 [Sodalis glossinidius str. 'morsitans']
gi|84780525|dbj|BAE75302.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 231
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 12/230 (5%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ LQ Q+I +A R ++L+AVSK I A+ GQ F EN +Q
Sbjct: 1 MSIIEQNLQRVHQQIRTAAQDCGRDPRQITLLAVSKTKPVTVIEAAIEAGQRAFGENYVQ 60
Query: 60 ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
E + + + FIG LQSNK + FD T+ R + A L+ + +
Sbjct: 61 EGVEKIGWFRERPEGAGLIWHFIGPLQSNKSRSVAENFDWCHTLDRPQLARRLNDQRPVE 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ+N E K+GIMP + L + +L + GLM IP + + +
Sbjct: 121 RAPLNVLIQINISGEATKAGIMPEEMLTLAALVTECPRLRLRGLMAIPAPESDFQRQLAV 180
Query: 177 LSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LS+GMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FKRMSALYETLQRVHPGVDTLSLGMTDDMPAAIAAGSTLVRIGTAIFGAR 230
>gi|302036140|ref|YP_003796462.1| hypothetical protein NIDE0769 [Candidatus Nitrospira defluvii]
gi|300604204|emb|CBK40536.1| conserved protein of unknown function, UPF0001 [Candidatus
Nitrospira defluvii]
Length = 235
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +++ +A A R +SV L+A SK V +++R A+ G EN+LQEA
Sbjct: 7 TIAGRVRAVLDEMQRAAARAGRLPESVRLIAASKTVSVERLRQAVDAGVRHLGENRLQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + V FIG+LQ KV +V F+ I +V A + +
Sbjct: 67 LPKI-DTLEREGVVWHFIGTLQRRKVKSVVGRFETIHSVDSLALAEEIDRQAKTAGLRQR 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ ++VN E K G P + L++ GLM IPP + ++
Sbjct: 126 ILLEVNLAGEASKGGFEPTTLVAALESLNGFEHLDIRGLMAIPPPTPTAEDARPYFRQLR 185
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + +LSMGM+ D+ +AI GAT VR+G+ IFG R
Sbjct: 186 TLAQALTARGYRNINMQELSMGMSHDYPVAIEEGATYVRVGTAIFGAR 233
>gi|171058313|ref|YP_001790662.1| alanine racemase domain-containing protein [Leptothrix cholodnii
SP-6]
gi|170775758|gb|ACB33897.1| alanine racemase domain protein [Leptothrix cholodnii SP-6]
Length = 229
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 109/226 (48%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +LQ ++ N+ A+RP +SV+L+AVSK + IR A + GQ F EN +QEA
Sbjct: 3 TIATRLQQVHGRLTNACRAAQRPDNSVALLAVSKTQPADAIRCAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++ IG LQ NK + FD + ++ R + A LS + + L
Sbjct: 63 LAKIAQLADLRQQIEWHLIGPLQGNKTRVVAEAFDWVHSIDRLRIAQRLSEQRPAGAAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QVN E KSG+ P D +L + GLM IP + + L
Sbjct: 123 QVCLQVNISGEASKSGLAPADVADVAHAVAALPRLRLRGLMAIPEPDGDLESQRRPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + L LSMGM+ D E A+ GAT VRIG+ +FG R
Sbjct: 183 RELFESLQARGLALDTLSMGMSADLEAAVLEGATMVRIGTAVFGAR 228
>gi|332289947|ref|YP_004420799.1| alanine racemase [Gallibacterium anatis UMN179]
gi|330432843|gb|AEC17902.1| alanine racemase [Gallibacterium anatis UMN179]
Length = 229
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 76/233 (32%), Positives = 107/233 (45%), Gaps = 17/233 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I + P V+L+AVSK I A GQ F EN +QE
Sbjct: 1 MEIAQNLAHIRQQIADCH-----PTQEVTLLAVSKTKPFADILKAYHAGQRQFGENYVQE 55
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + D+ IG LQSNK + FD ++T+ R K A LS + +
Sbjct: 56 GVEKIQLAQQQNINDITWHLIGPLQSNKTRIVAEHFDWVQTIDRVKIAERLSQQRPDHLQ 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI P Q ++ +L + GLM IP + + +
Sbjct: 116 PLQVLIQINISDENSKSGITPQQMEELAQQIINLPKLQLRGLMAIPAPTEDINQQTAVFN 175
Query: 179 EIAREC----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ K+ LSMGMT D + AIA G+T VRIG+ IFG+R
Sbjct: 176 QMKVLLQQLQQRFPQQKIDTLSMGMTDDMQTAIACGSTMVRIGTAIFGKRNYS 228
>gi|258545057|ref|ZP_05705291.1| alanine racemase domain protein [Cardiobacterium hominis ATCC
15826]
gi|258519677|gb|EEV88536.1| alanine racemase domain protein [Cardiobacterium hominis ATCC
15826]
Length = 254
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I + R D V L+ VSK V ++++ A G + ENK+QEA
Sbjct: 15 ITANLATIQARINAACAACGREPDEVRLLPVSKTVPAERLHFAYDAGIRLLGENKVQEAY 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW L + IG LQSNKV + + + A L + ++ R L V
Sbjct: 75 DKWQALADLDGLNWAVIGHLQSNKVKYVARFAAEFQALDSLDIAESLDRRLQQEGRSLDV 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL----- 177
++QVNT E QK G+ P+ F+ Q L + GLM + +
Sbjct: 135 FVQVNTSDEPQKYGMTPDAADAFIRALPQYNSLRLRGLMTLALFSDDHAAVRRCFVRLRE 194
Query: 178 ---SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFELAIA GAT+VR+G IFG R
Sbjct: 195 LRDRLRETNPAIAELSMGMSGDFELAIAEGATTVRVGQAIFGAR 238
>gi|91794033|ref|YP_563684.1| hypothetical protein Sden_2682 [Shewanella denitrificans OS217]
gi|91716035|gb|ABE55961.1| Protein of unknown function UPF0001 [Shewanella denitrificans
OS217]
Length = 235
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 16/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L++ + +I + RP SV+L+AVSK I A GQ F EN +QE
Sbjct: 3 TIADRLKLAQCRIAQAEQEHHRPAQSVNLLAVSKTKPLSDIIQAYQAGQRRFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K I + D++ FIG LQSNK I F + T+ REK A L + + L
Sbjct: 63 QQKIIDLAQDYPDIEWHFIGPLQSNKTRIIAEHFHWLHTLGREKIAQRLHQQRPQDKPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E K+G+ + + +L + G+M IP N +++
Sbjct: 123 NVCIQVNISGEDSKAGVTLAEVPALANIIHSLPKLKLRGIMAIPSQQANFDNAGQAQAQL 182
Query: 181 AREC---------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++E +L LSMGM+ D LAIA G+T VRIGS IFG R
Sbjct: 183 SKEFSQLKACFDTLKQTYPQLDTLSMGMSDDLSLAIAHGSTLVRIGSAIFGAR 235
>gi|89895634|ref|YP_519121.1| hypothetical protein DSY2888 [Desulfitobacterium hafniense Y51]
gi|89335082|dbj|BAE84677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 233
Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I+ +A+ + R ++ L+AVSK + + ++ A GQ FAEN++QE
Sbjct: 1 MDIYGSLSAVRQRIQQAAVKSGRDPSAIKLLAVSKTMSAGTVQRAYEAGQRSFAENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D + IG LQ+NKV + ++I ++ R L + +++
Sbjct: 61 WQDKVTQ--LPEDCEWHLIGRLQTNKVKYLDERINLIHSLDRLSLLETLESQGAQRNIIW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P +QVN + QK+G++ + +DF+ + V GLM I +P+ E+
Sbjct: 119 PTLVQVNIARDSQKAGLLAEEVEDFLREAAGCQHIQVYGLMTIGALGASPEDTQGFFREL 178
Query: 181 A--------REC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM++DFE AI G+T +R+G IFGER
Sbjct: 179 RLLKERLQQKNLPHVNLKELSMGMSQDFEWAIQEGSTIIRVGRQIFGER 227
>gi|194366159|ref|YP_002028769.1| alanine racemase domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194348963|gb|ACF52086.1| alanine racemase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 257
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLVTVRQRIADACARVGRDPASVRLLPVSKTVDDARIRMAVAAGCQELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RK-AETMADLGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAEALQQRLQLEDRTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ + FV +L V GLM + P + + F L E
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEAFVQQLPAFDRLRVRGLMTLAMFTPDVERVRACFVRLRE 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDKLQRTAPPGLDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGARATP 245
>gi|310817227|ref|YP_003965191.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
gi|308755962|gb|ADO43891.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
Length = 218
Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +I ++A+ R V+L+AVSK+ + ++ L GQ +F EN++QEA KW
Sbjct: 3 LSDILSRIRDTALDCDRSAADVTLIAVSKVQPNDRVAAVLDAGQRVFGENRVQEAMGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + DV L IG LQSNK + + LF+ I T+ R + A + + + +++Q
Sbjct: 63 DFRATYGDVDLHLIGPLQSNKARQAMELFNAIHTLDRLRLAETFARLAQELGKCPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G +P + V R L V+GLMCIPPA P PHF +L+E+A
Sbjct: 123 VNTGAEPQKAGCLPEEVDSLVAAARAM-DLPVKGLMCIPPADQGPAPHFAMLAEMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT LSMGM+ DF++AI GAT VR+GS IFG+R
Sbjct: 182 LTGLSMGMSGDFDVAIRHGATHVRVGSAIFGDRTA 216
>gi|291615213|ref|YP_003525370.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
gi|291585325|gb|ADE12983.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
Length = 226
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 110/227 (48%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + LQ + I +AI A R V L+AVSK ++ +R A GQ F EN LQ
Sbjct: 1 MTAILSNLQATRDAIAQAAISAHRNVAEVHLLAVSKTFPAEAVREAYRGGQAAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K LR ++ FIG +QSNK I F + +V R K A LS + Q
Sbjct: 61 EALEKIAALRDL-PLEWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAERLSAQRPSQLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L + +QVN E KSG+ P + L + GLM IP + F
Sbjct: 120 LNICLQVNVSGEESKSGVAPAEVAQLAQDVAHLPNLRLRGLMTIPSPAADQEQQRAPFAQ 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ L LSMGMT DF AI GAT VR+G+ IFG+R
Sbjct: 180 MRALLKQLNSQGMSLDTLSMGMTHDFPAAIMEGATIVRVGTAIFGQR 226
>gi|262369111|ref|ZP_06062440.1| YggS family pyridoxal phosphate enzyme [Acinetobacter johnsonii
SH046]
gi|262316789|gb|EEY97827.1| YggS family pyridoxal phosphate enzyme [Acinetobacter johnsonii
SH046]
Length = 234
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 8/228 (3%)
Query: 1 MSLGNK-LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M++ Q +I+ + ++ R +SV L+AVSK S+ +R + GQ F EN LQ
Sbjct: 6 MNILQNSRQHVLSQIQQACEISGRDVESVELLAVSKTHPSEVLRDMYAFGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ ++ FIG +Q NK + F + V R A LS + +
Sbjct: 66 EALQKIEALQDL-GIEWHFIGHVQRNKTKHLAEQFAWVHGVDRLIIAERLSAQRLITQPP 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS 178
L + +QVN + K G P++ + V Q + + GLM IP P +L
Sbjct: 125 LNLCLQVNIDGQDSKDGCQPDEVAELVKSISQLPHIKLRGLMVIPAPNNTQAFKAAKVLF 184
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E LSMGM+ D AIA+G+T VR+G+ +FG R
Sbjct: 185 DQVKELHVHPEDWDTLSMGMSGDMVDAIAAGSTMVRVGTALFGARDYS 232
>gi|253998334|ref|YP_003050397.1| alanine racemase domain-containing protein [Methylovorus sp.
SIP3-4]
gi|253985013|gb|ACT49870.1| alanine racemase domain protein [Methylovorus sp. SIP3-4]
Length = 233
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 117/230 (50%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +LQ + +I SA A R ++L+AVSK ++ IR A + GQ F EN LQ
Sbjct: 1 MSAITERLQAVQARICQSATAAGRDPQEITLLAVSKAQNADAIRDAWAAGQQRFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ ++ FIG +QSNK I F + V R K A L+ +
Sbjct: 61 EALNK-QALLQDLPIEWHFIGPIQSNKTQPIAQHFSWVHGVDRLKIAERLNAARPAELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L + +QVN +E KSGI P + Q +L + GLM IP P M + F +
Sbjct: 120 LQICLQVNVSHEESKSGIAPEEAYALASAITQLPRLQLRGLMAIPAPTPDMELQRAQFRM 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L LS+GM+ DF +AI GAT VR+GS IFG RP +
Sbjct: 180 VRALYDALRQQGIALDTLSIGMSEDFPVAIGEGATIVRVGSAIFGPRPAK 229
>gi|169796921|ref|YP_001714714.1| hypothetical protein ABAYE2917 [Acinetobacter baumannii AYE]
gi|169149848|emb|CAM87739.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
Length = 235
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 6 MNYLQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHQSERLREMYAAGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 66 EALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + V Q ++ + GLM IP +
Sbjct: 125 LNICLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFVDA--KK 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 LFDAVKDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|158320440|ref|YP_001512947.1| alanine racemase domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140639|gb|ABW18951.1| alanine racemase domain protein [Alkaliphilus oremlandii OhILAs]
Length = 234
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++ +++I+ +A R + + L+AV+K VD I+ A+ G ENK+QE
Sbjct: 3 LSLEKNIEFVQERIKIAAQKGHRNLEEIQLIAVTKTVDIDVIKQAIELGITHVGENKVQE 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V+ IG LQ NKV I+ D+I ++ + A + + R +
Sbjct: 63 LVRKYDIIGPV--VKWHLIGHLQRNKVKYIIDKVDLIHSLDSYRLAEEIDSRAKEIGRTI 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ K + + V GLM + P + N + +
Sbjct: 121 ECLLQVNVSGEETKYGVDKEGAKSLIREVAALGNIKVLGLMTMAPYVENQEEARQYFKAL 180
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE+AI GA VR+GS IFGER
Sbjct: 181 KDLSIEISAMDLENVHMKYLSMGMSNDFEIAIEEGANLVRVGSLIFGERDYS 232
>gi|85710049|ref|ZP_01041114.1| hypothetical protein NAP1_14228 [Erythrobacter sp. NAP1]
gi|85688759|gb|EAQ28763.1| hypothetical protein NAP1_14228 [Erythrobacter sp. NAP1]
Length = 228
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + I A+R V+L+AVSK + KI L G +F EN++QEA++K
Sbjct: 10 SRLAEVESNIARMCKPARREPADVTLIAVSKTHPAHKIEPLLEAGHRVFGENRVQEAQEK 69
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W V+L IG LQSNK + V LFDVI ++ R L+ M K + +P +
Sbjct: 70 WPQLREAYSGVELHLIGQLQSNKAEDAVELFDVIHSLDRSSLLKALAKAMDKSGKRVPCF 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QK G P + + + + GLMC+PPA P F L+++A++
Sbjct: 130 VQVNIGDEDQKGGC-PISELPEFLEKVRAANVPIAGLMCLPPADTEAAPFFAFLAKLAKD 188
Query: 184 CKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ D+E A+ GAT VR+G+ +FG R
Sbjct: 189 NGLTGDEGSLSMGMSGDYETAVQLGATHVRVGTALFGAR 227
>gi|167623106|ref|YP_001673400.1| alanine racemase domain-containing protein [Shewanella halifaxensis
HAW-EB4]
gi|167353128|gb|ABZ75741.1| alanine racemase domain protein [Shewanella halifaxensis HAW-EB4]
Length = 233
Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A + R + + L+AVSK + +I A GQ F EN +QE
Sbjct: 3 TITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQEG 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K ++ D++ FIG LQSNK + +LFD + TV REK A L+ + + L
Sbjct: 63 ESKVNALSQEFPDIEWHFIGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMPAL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V IQVN E KSG+ + +L + GLM IP A + L
Sbjct: 123 NVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLRGLMAIPSADVDELTAIQELAAL 182
Query: 178 ----SEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+E+A+ + LS+GM+ D ELA+A G+T VRIGS IFGER
Sbjct: 183 QSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYS 231
>gi|104779598|ref|YP_606096.1| hypothetical protein PSEEN0318 [Pseudomonas entomophila L48]
gi|95108585|emb|CAK13279.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 228
Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 104/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + +I+N+A A R S+ L+AVSK + IR A + G F EN LQ
Sbjct: 1 MSTLAENISAISARIDNAAKAAGRAPASIQLLAVSKTKPASAIREAHASGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALTKQQELSDL-PLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPANLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P + L + GLM IP N +
Sbjct: 120 LNICLQVNVSGEDSKSGCAPAELPALAQAVSALPGLRLRGLMAIPEPTDNRTEQEAAFAT 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + L LSMGM+ D E AI+ GAT VRIG+ +FG R
Sbjct: 180 LRQLQEQLDLGLDTLSMGMSHDLEAAISQGATWVRIGTALFGARDY 225
>gi|294085223|ref|YP_003551983.1| hypothetical protein SAR116_1656 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664798|gb|ADE39899.1| Protein of unknown function UPF0001 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 223
Score = 171 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 110/222 (49%), Positives = 138/222 (62%), Gaps = 3/222 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + L+ + KI+ +A +LVAVSK +I AL GQ F EN++
Sbjct: 1 MTAIHDNLKAVQDKIQAAARADAHADADEPTLVAVSKRQPDDRIDAALDAGQRCFGENRV 60
Query: 59 QEAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEA+ +W R D+ L IG+LQ+NK ++ V+LFDVIE V R K A LS EM KQ+
Sbjct: 61 QEAQTRWAARRAAYPDLILHLIGALQTNKAADAVALFDVIEVVDRPKLARALSGEMAKQN 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R L YIQVNTG E QKSGI P DF+ CR +Y LN+ GLMCIPPA P HF LL
Sbjct: 121 RQLDCYIQVNTGDEPQKSGISPADVDDFIAQCRDEYGLNIIGLMCIPPADEEPAMHFALL 180
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ IA+ L KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 181 ATIAKRNGLDKLSMGMSGDYEEAIGFGATSVRVGSAIFGARD 222
>gi|190149320|ref|YP_001967845.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307244852|ref|ZP_07526951.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253806|ref|ZP_07535660.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258262|ref|ZP_07540005.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|189914451|gb|ACE60703.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306854297|gb|EFM86503.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863290|gb|EFM95230.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867722|gb|EFM99567.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 227
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A LS++ L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLSVQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|282854076|ref|ZP_06263413.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J139]
gi|282583529|gb|EFB88909.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J139]
Length = 238
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 12/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSVADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + + ++ IG LQ+NK + + + K A L + K+ R
Sbjct: 61 ALAKSELMDDDHPGLEWSIIGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L V +Q+N+ E QKSGI P + DF L+V GLM + + +
Sbjct: 121 LRVLVQMNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVADCFDL 180
Query: 178 -----SEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +E ++LSMGM+ D E+AIA G+T VRIG+ IFG R
Sbjct: 181 VVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGTRDP 232
>gi|255264498|ref|ZP_05343840.1| pyridoxal phosphate enzyme, YggS family [Thalassiobium sp. R2A62]
gi|255106833|gb|EET49507.1| pyridoxal phosphate enzyme, YggS family [Thalassiobium sp. R2A62]
Length = 225
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 95/218 (43%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +IE A R V L+AVSK+ + ++ L G +F EN++QEA KW
Sbjct: 9 LAEIEARIEAEAERVGRDPVGVRLIAVSKVQPNDRVAAVLEQGHRLFGENRVQEAAGKWP 68
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + D+++ IG LQ+NK + + LFD I T+ R K A ++ + +YIQ
Sbjct: 69 EFRSRFEDIEVDLIGPLQTNKARQAMELFDAIHTIDRSKLAKTIARLAQEIGACPDLYIQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P FV C L V GLMCIPPA P HF LL+++A +
Sbjct: 129 VNTGREDQKAGIAPEDVDGFVAECVAM-DLPVRGLMCIPPAEEEPSLHFALLAKMAGRNE 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
LT LSMGM+ DFE AIA GAT VR+GS IFG+R P T
Sbjct: 188 LTGLSMGMSGDFECAIAQGATHVRVGSAIFGDRVPAAT 225
>gi|77361519|ref|YP_341094.1| PLP-binding domain-containing protein [Pseudoalteromonas
haloplanktis TAC125]
gi|76876430|emb|CAI87652.1| conserved protein of unknown function ; putative enzyme with
PLP-binding domain [Pseudoalteromonas haloplanktis
TAC125]
Length = 237
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I +A A+R + ++L+AVSK S I A GQ F E+ +QEA
Sbjct: 12 TIAERLTSAYARIAVAAKNAQRNSNEITLLAVSKTKPSADIIAAYKHGQRQFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +QSNK + + + F +++V R K A L+ + L
Sbjct: 72 VDKIAQLHAYSDIIWHFIGPIQSNKSALVAANFAWVQSVDRIKIAKRLNSQRPADKAALN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSG N+ + Q QL + GLM IP + ++
Sbjct: 132 VLIQVNISNEEAKSGCQLNEVAELASFINQCEQLTLRGLMAIPAKSDDITTQTQYFKQLQ 191
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 192 TCFDKLQTQYPQVDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|315651406|ref|ZP_07904431.1| cell division protein YlmE [Eubacterium saburreum DSM 3986]
gi|315486365|gb|EFU76722.1| cell division protein YlmE [Eubacterium saburreum DSM 3986]
Length = 226
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ I+ + + R + V+L+AVSK ++ I A G F ENK+QE
Sbjct: 2 VKENLENVERNIKLACEKSGRDINDVTLIAVSKTKPNELIMEAYEAGIRDFGENKVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D++ IG LQ+NKV +++ +I ++ + A + E IK+ +
Sbjct: 62 RKCEE--LPKDIRWHMIGHLQTNKVRQLLGNTVLIHSIDSIRLADTIDTEAIKKGIHVDG 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++N E K G + + ++ + L + L+++GLM I P + + + + + ++ +
Sbjct: 120 LLEINVAKEASKYGFVEEELEEILPLFGRYKNLHIKGLMTIAPDVDDAEKNRKIFKKLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+ +A+ GA VR+G+GIFG+R
Sbjct: 180 LYVDINEKNYDNIEVKFLSMGMTGDYTVAVEEGAGFVRVGTGIFGKR 226
>gi|312622419|ref|YP_004024032.1| alanine racemase domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202886|gb|ADQ46213.1| alanine racemase domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 233
Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L + FIG LQ+NK+ I +I ++ + L K S+
Sbjct: 66 LPKFQELPYL---EWHFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCAKASKICS 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V I++N G E K G+ + D + + ++G M IPP + +F +
Sbjct: 123 VLIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDEMKLRVYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPQK 233
>gi|296449947|ref|ZP_06891711.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP08]
gi|296878329|ref|ZP_06902337.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP07]
gi|296261217|gb|EFH08048.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP08]
gi|296430627|gb|EFH16466.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP07]
Length = 237
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 6 SIKDNLSEIRSKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 66 ARKYDIIGNKLN--WHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ + DFV + + ++GLM + P + + + +
Sbjct: 124 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 183
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 184 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNY 234
>gi|307262633|ref|ZP_07544263.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|306872056|gb|EFN03770.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 227
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A LS++ L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLSVQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QKLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|319407775|emb|CBI81422.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 226
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 105/224 (46%), Positives = 147/224 (65%), Gaps = 6/224 (2%)
Query: 1 MSL-----GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
M++ + + +Q I + RP ++ L+AVSK V + I L GQ +FAE
Sbjct: 1 MNIPQISSIDAWKNLQQDIAKTCQDYHRPVKNIQLIAVSKTVTANNIVPLLKAGQSLFAE 60
Query: 56 NKLQEAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA +KW LR++++ +L IG LQSNK +E V++FDVI+TV REK A L+ EM
Sbjct: 61 NRVQEAAEKWPSLRQQFNTIELHLIGPLQSNKTAEAVTIFDVIQTVDREKIAKSLAEEMH 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
KQ + LP YIQVN G E QKSGI P++ K FV C+ Y L++ GLM IPP NP P+F
Sbjct: 121 KQKKHLPCYIQVNIGLEPQKSGIFPHEVKAFVAQCKNNYGLDIIGLMAIPPLQENPGPYF 180
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+++A+E L+KLSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 181 ALLAKLAKETGLSKLSMGMSNDFKIALQFGANVLRIGSALFGPR 224
>gi|302381495|ref|YP_003817318.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
gi|302192123|gb|ADK99694.1| alanine racemase domain protein [Brevundimonas subvibrioides ATCC
15264]
Length = 237
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 99/221 (44%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ +L V + +I +A A R SV+L AVSK + I ALS G +F EN++QE
Sbjct: 11 LDFAGRLAVVRSRILGAAKAAGRDPASVTLTAVSKTQPPEAIDAALSAGLRVFGENRVQE 70
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ +W+ R D++LR IG LQSNK + V+LFDVIET+ REK L+ K R
Sbjct: 71 AQGRWLDRRAGLPDLELRLIGPLQSNKAEDAVALFDVIETLDREKLVGALASAAAKVGRS 130
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +QVNTG E QK+G+ P + L R + L VEGLM IPPA P HF LL+
Sbjct: 131 PRLLVQVNTGEEPQKAGVAPRDADALIALARAQG-LTVEGLMAIPPADEEPILHFALLAR 189
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L LSMGM+ D+E AI G+T VR+GS +FGER
Sbjct: 190 IAERNGLGVLSMGMSGDYEAAIRLGSTHVRVGSALFGERNP 230
>gi|114332299|ref|YP_748521.1| hypothetical protein Neut_2339 [Nitrosomonas eutropha C91]
gi|114309313|gb|ABI60556.1| Protein of unknown function UPF0001 [Nitrosomonas eutropha C91]
Length = 238
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++LQ K +I ++A R ++ L+A SK K+R A GQ +F EN LQE
Sbjct: 3 TIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK I F + + REK A+ LS + L
Sbjct: 63 LVKIRALADL-PIEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN EI KSG+ P + + ++ +L + G+M +P + F ++
Sbjct: 122 VCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMMR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + K L LSMGM+ D E AIA GAT VRIG+ IFG+R
Sbjct: 182 EVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRY 228
>gi|217969412|ref|YP_002354646.1| alanine racemase [Thauera sp. MZ1T]
gi|217506739|gb|ACK53750.1| alanine racemase domain protein [Thauera sp. MZ1T]
Length = 271
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
NKL + +I+ + A R V L+ VSK +R+A + G + ENK+QEA
Sbjct: 25 DFRNKLAAVRARIDAACRRAGRDPADVRLLPVSKTKPEASVRMAYAAGCRMLGENKVQEA 84
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+KW + ++ IG LQ+NK + D + + + A L + + R L
Sbjct: 85 HRKWEATQDLGGLRWSIIGHLQTNKARMVARFADEFQALDSLRVAEALERRLQVEGRSLD 144
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V++QVNT E K G+ P FV L V GLM + + +
Sbjct: 145 VFVQVNTSGEASKYGLAPEDVPGFVRALPAFSALRVRGLMTLALFSSEAERVRQCFILLR 204
Query: 182 RE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE+AI GAT VR+G +FG RP
Sbjct: 205 TLRDRLRQSAPTGIGLDELSMGMSDDFEIAIEEGATVVRVGQALFGARPLP 255
>gi|91976780|ref|YP_569439.1| hypothetical protein RPD_2306 [Rhodopseudomonas palustris BisB5]
gi|91683236|gb|ABE39538.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB5]
Length = 271
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S L+ ++I + R + V L+ V+K V ++ +R+A + G FAENKLQEA
Sbjct: 24 SFAANLKTVLERIAAACDRCGRNVNDVRLLPVTKTVPARVLRLAYAAGITDFAENKLQEA 83
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K+ + + ++ IG LQ+NKV +V + + A L+ + + R L
Sbjct: 84 RDKF-AILGDLPIRWSIIGHLQTNKVKYLVRFASEFHALDSLRLADELNRRLEAEGRDLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V++QVNT E K G+ PN F+ + +L GLM + + +
Sbjct: 143 VFVQVNTSGEASKYGLHPNDVIAFIERLPEFPRLKPRGLMTLAIFSADTARVRACFRLLR 202
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LT+LSMGM+ DFE+AI GA VR+G IFG RP
Sbjct: 203 DLRDRAVPIHPGLTQLSMGMSGDFEVAIEEGANVVRVGQAIFGARPTS 250
>gi|160933112|ref|ZP_02080501.1| hypothetical protein CLOLEP_01955 [Clostridium leptum DSM 753]
gi|156868186|gb|EDO61558.1| hypothetical protein CLOLEP_01955 [Clostridium leptum DSM 753]
Length = 252
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + ++ I +A + R + ++L+A +K V ++ I +S G ENK+QE
Sbjct: 21 NLKENYREIRENIAAAAKASGRKPEDITLLAATKTVPAEVINYGISLGIDYLGENKVQEF 80
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ K+ L+FIG LQ+NKV +IV ++I++V K A ++ +
Sbjct: 81 LSKYDEYDKKR-CHLQFIGHLQTNKVKQIVGKVELIQSVDSVKLAREIAKCSQRLGIVTN 139
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V ++VN G E KSG+ P + K + Q + V+GLM IPP +F +
Sbjct: 140 VLVEVNIGGEENKSGVKPEEAKALLREISQIQGILVKGLMAIPPICEKNSEIRRYFAAMR 199
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + LSMGM+ D+ AI GAT VR+GS +FG R
Sbjct: 200 KLFIDIRGENIDNITMDILSMGMSSDYMEAIEEGATMVRVGSSLFGARSYP 250
>gi|153004231|ref|YP_001378556.1| alanine racemase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027804|gb|ABS25572.1| alanine racemase domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 213
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/197 (37%), Positives = 105/197 (53%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+LVAVSK + IR A GQ F EN QE ++K L +++ FIG+LQ+
Sbjct: 15 PAGVTLVAVSKTQPAAAIREAYEAGQRDFGENYAQEWREKADALADLPELRWHFIGALQT 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + + TV RE+ A LS ++ V+++VNTG E K+G P +
Sbjct: 75 NKVKYLAGRVAYVHTVDREELARELSRRFAQKGAVARVFVEVNTGGEASKAGCAPGEVPA 134
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
R L + G+M IPP +P+PHF L + + +LSMGM+ D+ +A+ G
Sbjct: 135 LAAAIRDLPSLELVGVMGIPPPEDDPRPHFRALRALRDALGVRELSMGMSGDWRVAVEEG 194
Query: 205 ATSVRIGSGIFGERPCQ 221
AT VRIGS IFG R +
Sbjct: 195 ATFVRIGSAIFGARAPR 211
>gi|83855262|ref|ZP_00948792.1| alanine racemase domain protein [Sulfitobacter sp. NAS-14.1]
gi|83843105|gb|EAP82272.1| alanine racemase domain protein [Sulfitobacter sp. NAS-14.1]
Length = 217
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 93/221 (42%), Positives = 123/221 (55%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L +I + A R SV L+AVSK+ ++ L G F EN++QE
Sbjct: 1 MS----LHDITSRIAKAEADAGRTPGSVQLIAVSKVQPDTRVAAVLDEGHRYFGENRVQE 56
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW ++++D V L IG LQSNK + LFDVI T+ R K A + + R
Sbjct: 57 AEGKWPAFQQQYDGVGLHLIGPLQSNKARSAMELFDVIHTLDRPKLAQTFARLAQELGRC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G++P F+ C+ L V GLMCIPP HF LL++
Sbjct: 117 PDMFVQVNTGEEAQKAGVLPADADAFIKECQS-LDLPVRGLMCIPPVDEEAALHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA + LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAARNGVGDLSMGMSSDFEKAIALGATHVRVGSAIFGERSA 216
>gi|88859059|ref|ZP_01133700.1| hypothetical protein PTD2_08644 [Pseudoalteromonas tunicata D2]
gi|88819285|gb|EAR29099.1| hypothetical protein PTD2_08644 [Pseudoalteromonas tunicata D2]
Length = 244
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 107/228 (46%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I + ++P SVSL+AVSK ++ I A G F E+ +QEA
Sbjct: 14 TIAERLNSAYARIAQAEKNHQKPAKSVSLLAVSKTKPAQLIIDAYHAGHRKFGESYVQEA 73
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + D++ FIG +QSNK I F ++++ R K A L+ + L
Sbjct: 74 VEKIQQIPFN-DIEWHFIGPIQSNKTKAIAEHFSWVQSIERPKIAERLNQQRPTNLPPLN 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG Q QL + GLM IP + S++
Sbjct: 133 VLIQVNISGEQSKSGCNLADVAALSAHISQSKQLVLRGLMAIPAPSDDQAQLIASFSQLK 192
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A+ + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 193 TCFDTLKAQYPSIDTLSMGMSADVEAAIAAGSTMVRIGTDIFGAREYP 240
>gi|293602361|ref|ZP_06684807.1| YggS family pyridoxal phosphate enzyme [Achromobacter piechaudii
ATCC 43553]
gi|292819123|gb|EFF78158.1| YggS family pyridoxal phosphate enzyme [Achromobacter piechaudii
ATCC 43553]
Length = 239
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 17/237 (7%)
Query: 1 MSLGN----KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
M++ + ++ Q+I ++ A R D+V L+ VSK + IR A++ G F EN
Sbjct: 1 MTVQDTMAGRIARIHQRIADACARAGRSPDNVVLLPVSKTFEVDAIREAMALGMTRFGEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K QE ++K ++ IG LQ+NK + D ++++ R A L ++ +
Sbjct: 61 KTQELRQKAAA-LAGQGLRWVLIGHLQTNKAKDAARDADEVQSLDRVDLAEALHRRLLNE 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKP 172
R L V +QV T E K G+ P + + + L V+GLM + P +
Sbjct: 120 GRTLDVLVQVKTSTEPSKFGMAPEDVSAFLRRIAAEFPTLRVQGLMTLAVNSPDPDAVRA 179
Query: 173 HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + + L +LSMGM+ DFELAI G+T VRIG+ IFG R
Sbjct: 180 CFRALRTLRDSLRAENIEGVSLERLSMGMSGDFELAIEEGSTEVRIGTAIFGARTYP 236
>gi|172037628|ref|YP_001804129.1| hypothetical protein cce_2715 [Cyanothece sp. ATCC 51142]
gi|171699082|gb|ACB52063.1| UPF0001-containing protein [Cyanothece sp. ATCC 51142]
Length = 218
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +I + LVAV+K I+ A + G FAE+++QE
Sbjct: 1 MTIAENLDKIMGQI----------PSDIRLVAVTKKKSVAAIKEAYNYGIRDFAESRVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ D+ FIG +Q+NK +++ F I +V K A L K
Sbjct: 51 ALEKQEQLQDYQDICWHFIGHIQTNKAKKVLENFHWIHSVDSLKLAEYLDKLAAKTFISP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QV + K G + + + ++GLM I P + +
Sbjct: 111 HVCLQVKILPDPNKYGWTVEELWQDLPELESFKHIKIDGLMTILPLGLSQVECLDTFEKT 170
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +L +LSMGM+ D+ LA+ GAT +R+G+ IFGER
Sbjct: 171 KKLATKITEKSSLQLKELSMGMSNDYLLAVEKGATMIRLGTIIFGERD 218
>gi|145300499|ref|YP_001143340.1| hypothetical protein ASA_3631 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853271|gb|ABO91592.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 233
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K++I +A A R D ++L+AVSK + IR A + GQ E+ Q
Sbjct: 1 MSQIAQHLLQVKERIVQAARQADRCVDHINLLAVSKTKPLEAIREAYAAGQRRLGESYAQ 60
Query: 60 EAKKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K D++ FIG LQSNK + FD +++V R+K L+ +
Sbjct: 61 EAATKIDTLRKQAVCTDIEWHFIGPLQSNKSRLVAERFDWVQSVDRDKLIERLNNQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-------N 169
L + +Q+N E KSG + L + +L + GLM IP
Sbjct: 121 LAPLNICLQINISGESSKSGTSEQEIFRLAELVSRSERLVLRGLMAIPEHTSDEAVLAAQ 180
Query: 170 PKPHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +E+A++ + LSMGMT D ELAIA G+T VR+G+ IFG R
Sbjct: 181 MVRMQTLFTELAQQYPSVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGARDYS 233
>gi|254452266|ref|ZP_05065703.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 238]
gi|198266672|gb|EDY90942.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 238]
Length = 217
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 90/219 (41%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL K++I + A R S L+AVSK+ +++++ L G I+ EN++QE
Sbjct: 1 MSLLE----IKKRISAAEAKAGRSDGSTKLIAVSKVQPNERVQAILEQGHRIYGENRVQE 56
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++D ++L IG LQ+NK + L I T+ R K A + + +
Sbjct: 57 AADKWPAFREQFDGIELHIIGPLQTNKARAAMELAQAIHTLDRIKLAHMFARLAQEMGAC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+YIQVNTG E QK+G++P F+ L V GLMCIPP +P PHF LL +
Sbjct: 117 PDLYIQVNTGAEPQKAGVLPASADAFIAESVA-LDLPVAGLMCIPPVNEDPSPHFKLLGD 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE A+A GAT VR+GS IFG+R
Sbjct: 176 IAARNGLNGLSMGMSGDFETAVAHGATHVRVGSAIFGDR 214
>gi|126654877|ref|ZP_01726411.1| hypothetical protein CY0110_10587 [Cyanothece sp. CCY0110]
gi|126623612|gb|EAZ94316.1| hypothetical protein CY0110_10587 [Cyanothece sp. CCY0110]
Length = 218
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +I SV LVAV+K I A + G FAE+++QE
Sbjct: 1 MNISENLDKILGQI----------PSSVRLVAVTKKKSVAAIEEAYNYGIRDFAESRVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ D+ FIG +Q+NK +++ F I +V K A L K S
Sbjct: 51 ALEKQEQLQNYQDICWHFIGHIQTNKAKQVLKNFHWIHSVDSLKLAKYLDKLADKNSISP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V +QV ++ K G + + + ++GLM I P +
Sbjct: 111 HVCLQVKILHDPNKYGWKVEEIWQDLSKLESLKYIKIDGLMTILPLGLSQNECLDTFAKT 170
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+A + +L +LSMGM+ D+ LA+ GAT +R+G+ IFGER
Sbjct: 171 KELASKITEKSSLQLKELSMGMSNDYLLAVEKGATMIRLGTIIFGERN 218
>gi|298243510|ref|ZP_06967317.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297556564|gb|EFH90428.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 233
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 18/235 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS ++ +++I +A A+R V+LVAVSK + I++A + G F EN++QE
Sbjct: 1 MS--ANIKHVRERIAEAAHTAQREPSEVTLVAVSKTKPLEMIQIAYNLGIRHFGENRVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-----EMIK 115
A I + D+ IG LQ+NK ++VS FD++++V A L +
Sbjct: 59 AL-SKIEVFHPADLIWHMIGHLQTNKARKVVSAFDIVQSVDSLHLARTLDRLLAEEATDQ 117
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKP 172
+ LP+ ++VN E K+G+ D L + GLM + P + + +P
Sbjct: 118 EPGRLPILLEVNVASEASKTGVTLTDIPDLARQVATLPHLEIRGLMTVAPQVEDLEEVRP 177
Query: 173 HFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L E + T+LSMGMT D+ +AI GAT VRIG IFG R
Sbjct: 178 VFRALHEARDHLRDEILGPTCTELSMGMTNDYVIAIEEGATIVRIGRAIFGARAY 232
>gi|303250530|ref|ZP_07336727.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251874|ref|ZP_07338045.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247027|ref|ZP_07529081.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251572|ref|ZP_07533479.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649304|gb|EFL79489.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302650518|gb|EFL80677.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856479|gb|EFM88628.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306861036|gb|EFM93042.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 227
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG+LQSNK + FD I+TV R K A LS + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 RQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|51246632|ref|YP_066516.1| hypothetical protein DP2780 [Desulfotalea psychrophila LSv54]
gi|50877669|emb|CAG37509.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 229
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K++I +A A R + + LVAVSK + ++ + A++CGQ F EN +QE +
Sbjct: 2 ICQNIAQVKERIAQAAKKAGRAPEDIQLVAVSKRLPAETVLQAIACGQQQFGENYIQEVQ 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + FIG+LQSNK + ++ETV R K A L+ ++ + L +
Sbjct: 62 EKKE--LIGDKARFHFIGNLQSNKAKMAATYCSMVETVDRLKIAKALNKHSLELDKTLDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN G + KSG + + + + L + GLM IPP P +PHF L
Sbjct: 120 LVQVNIGQDQNKSGTDKAEAAELIRQINKLPALRIRGLMTIPPLHKEPEDSRPHFRNLRT 179
Query: 180 IAREC------KLT---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A + + +LSMGM+ D+ +AI GAT VR+G+ IFG R
Sbjct: 180 LAEKLVSENILQCDGRVELSMGMSSDYHIAIEEGATIVRVGTAIFGTR 227
>gi|316934046|ref|YP_004109028.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315601760|gb|ADU44295.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 259
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ +++I + R D V L+ V+K V + +R+A + G F ENKLQEA+ K
Sbjct: 26 NLKSVRERIAAACQRCGRS-DDVRLLPVTKTVPANVLRLAYAAGISEFGENKLQEARDKR 84
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + ++ IG LQ+NKV +V + + A L+ + + R L V++Q
Sbjct: 85 -AMLVDLPIRWSIIGHLQTNKVKYLVRFASEFHALDSLRLAEELNRRLDAEGRDLDVFVQ 143
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--- 182
VNT E K G+ P+ F + +L GLM + + + +
Sbjct: 144 VNTSGEASKYGLAPDDLVPFARRLSEYPRLKPRGLMTLAIFSADTERVRQCFRLLRDLRD 203
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LT+LSMGM+ DFE AI GAT VR+G IFG RP
Sbjct: 204 RATSVHPDLTQLSMGMSGDFEAAIEEGATVVRVGQAIFGARPTS 247
>gi|319404815|emb|CBI78416.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 226
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 104/224 (46%), Positives = 146/224 (65%), Gaps = 6/224 (2%)
Query: 1 MSL-----GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
M++ + + +Q I + RP +++ L+AVSK V + I L G +FAE
Sbjct: 1 MNIPHISSIDAWKNLQQDIAKTCHDYHRPVENIQLIAVSKTVAANNIVPLLQAGHSLFAE 60
Query: 56 NKLQEAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA +KW LR++++ +L IG LQSNK +E V +FDVI+TV REK A L+ EM
Sbjct: 61 NRVQEAAEKWPSLRQKFNTIELHLIGPLQSNKTAEAVRIFDVIQTVDREKIAKSLAEEMH 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
KQ + LP YIQVN G E QKSGI P++ K FV C+ Y L++ GLM IPP NP P+F
Sbjct: 121 KQKKHLPCYIQVNIGLEPQKSGIFPHEVKAFVAQCKNNYGLDIVGLMGIPPIQENPGPYF 180
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+++A+E L+KLSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 181 ALLAKLAKEIGLSKLSMGMSNDFKIALQFGANVLRIGSALFGPR 224
>gi|78189315|ref|YP_379653.1| hypothetical protein Cag_1350 [Chlorobium chlorochromatii CaD3]
gi|78171514|gb|ABB28610.1| Protein of unknown function UPF0001 [Chlorobium chlorochromatii
CaD3]
Length = 229
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L ++ + A R +SV L+AVSK ++ +R A GQ+ F E+ +QE
Sbjct: 3 SIASNLAAIHAQVAAACKQAGRKPESVRLIAVSKTKSAELVREAFDAGQLEFGESYMQEF 62
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + +Q FIG LQSNKV +V +I + + TA LS ++Q+ +
Sbjct: 63 LEKYESRALQGCPIQWHFIGHLQSNKVRSLVGKVSLIHGIDKLSTAEELSKRAVQQNLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA-MGNPKPHFYLLSE 179
++VNT E K G+ P+ + + GLM I + F L E
Sbjct: 123 DYLLEVNTSGEASKYGMAPHTVLSEASAFFALPNVRLRGLMTIATYEREAARREFQELRE 182
Query: 180 IARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + T+LSMGM+ DFE AI GAT +R+GS IFG R
Sbjct: 183 LLEQLQAIAPDPTLVTELSMGMSGDFEEAIQEGATMIRVGSAIFGWR 229
>gi|221632825|ref|YP_002522047.1| hypothetical protein trd_0819 [Thermomicrobium roseum DSM 5159]
gi|221155434|gb|ACM04561.1| conserved hypothetical protein TIGR00044 [Thermomicrobium roseum
DSM 5159]
Length = 230
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 9/223 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +IE +A A R SV +VAV+K +D +K++ A G +F EN++QEA+
Sbjct: 7 LREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGENRVQEAQ 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D +L IG LQ+NKV V LF +I +V R L + R LP+
Sbjct: 67 RKFGENPLPPDAELHLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARVGRRLPI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSE 179
IQVN E QK G P + + + L K L+V GLM I P +P F L E
Sbjct: 127 LIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLDVRGLMTIAPLVAESELVRPVFRALRE 186
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + + L +LSMGM+ DF++A+ GAT VRIG +FG
Sbjct: 187 LRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFG 229
>gi|319899420|ref|YP_004159517.1| hypothetical protein BARCL_1280 [Bartonella clarridgeiae 73]
gi|319403388|emb|CBI76952.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 226
Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +Q I + RP +++ L+AVSK V + I L GQ +FAEN++QEA +K
Sbjct: 10 DAWKNLQQDIAKTCENYHRPVENIQLIAVSKTVSADNIVPLLQVGQSLFAENRVQEANEK 69
Query: 65 WIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W PLR+++ +L IG LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP Y
Sbjct: 70 WPPLRQKFKTIELHLIGPLQSNKTTEAVKIFDVIQTVDREKIAKNLAKEMQKQKKHLPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSGI P + K FV C+ Y L++ GLM IPP NP P+F LL+++A+E
Sbjct: 130 VQVNMGLEPQKSGIAPQEVKAFVAQCKNNYGLDIVGLMAIPPVQENPGPYFALLAKLAKE 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+KLSMGM+ DF++AI GA +RIGS +FG R
Sbjct: 190 TNLSKLSMGMSNDFKIAIQFGANVLRIGSALFGNR 224
>gi|212704883|ref|ZP_03313011.1| hypothetical protein DESPIG_02950 [Desulfovibrio piger ATCC 29098]
gi|212671725|gb|EEB32208.1| hypothetical protein DESPIG_02950 [Desulfovibrio piger ATCC 29098]
Length = 241
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 13/232 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++ + A R + V L+AVSK+ ++ + + GQV F EN +QEA
Sbjct: 7 LRERYHSVLERLGEAIARAGRKPEEVRLIAVSKLHPAEDVACVAAAGQVDFGENYVQEAL 66
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + D++ IG +QS K +++ F ++ T+ K A L
Sbjct: 67 QKRQDLVAQPQCRDIRWHMIGHVQSRKAAQVAGAFALVHTLDSVKLADALEKRAAALGVV 126
Query: 120 LPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
PV ++N G E QK+GIM + + + L ++GLMC+PP + +
Sbjct: 127 QPVLCEINVGEEPQKAGIMADALPELAEHVLAHCPHLEMQGLMCLPPVFDAGEAARPYFA 186
Query: 179 EIAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ R L LSMGM+ DF A+A GAT VRIG+ IFG RP +
Sbjct: 187 RLYRLREDMRARTGLPLPHLSMGMSGDFAAAVAEGATLVRIGTDIFGPRPPK 238
>gi|153011453|ref|YP_001372667.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563341|gb|ABS16838.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 276
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 9/226 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L+ + +I + + R + V L+ ++K V ++ +R A + G + F ENKLQEA+
Sbjct: 31 ASNLKEVRARIAAACHRSGRDPNDVRLLPITKTVPARILRHAYAAGILDFGENKLQEARD 90
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L ++ +G LQ+NKV +V L + + A L+ + + R L VY
Sbjct: 91 KQAALNDL-PIRWSIVGHLQTNKVKYLVRLAWEFHALDSFRLAEELNRRLDAEDRDLDVY 149
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P+ FV + +L GLM + + + F LL +
Sbjct: 150 VQVNTSDEESKYGLHPDDLMSFVARLSEFPRLKPRGLMTLAIFSSDTARVRACFRLLRGL 209
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 210 RDRVVDVHPHMNGLSMGMSGDFEVAIEEGATVVRVGQAIFGPRPTS 255
>gi|254447389|ref|ZP_05060855.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
HTCC5015]
gi|198262732|gb|EDY87011.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
HTCC5015]
Length = 234
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +I+ + A V L+AVSK + ++ GQ F EN LQ+A
Sbjct: 8 IIDNWHNVLHRIDQACQTADCDTP-VKLLAVSKTKPAWMVKALYDKGQRDFGENYLQDAL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L ++ FIG +QSNK + I FD + +V R K A LS + ++ L +
Sbjct: 67 EKIEALGTLDEIHWHFIGQIQSNKTATIAQYFDWVHSVDRFKIARRLSEQRPERLSALNL 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---- 178
+Q+N E QK G+ P L + GLM IP + +
Sbjct: 127 CLQINIDNEPQKGGVAPEDAAKLAREIETLPNLRLRGLMAIPKPANSEEQQLASFKSLED 186
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LSMGM+ D E AIA+G+T VR+GS IFG R
Sbjct: 187 LFQQIKSQLKKAEDFDTLSMGMSGDLESAIAAGSTMVRVGSDIFGAR 233
>gi|119475410|ref|ZP_01615763.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
HTCC2143]
gi|119451613|gb|EAW32846.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
HTCC2143]
Length = 230
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I N+ R ++V+L+AVSK + ++R A++ G EN LQEA
Sbjct: 8 IALNIAKVRDRIRNAEEKYHRKPNTVALMAVSKTRSADEVRQAIAAGITDIGENYLQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + DV FIG +QSNK I FD + +V R K A L+ + L V
Sbjct: 68 DKQL-HLTDIDVYWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIALRLNDQRPSGMPPLNV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FY 175
+QVNT E K+G+ Q + + GLM IP A +
Sbjct: 127 CLQVNTSDENSKAGVSLEQLASLAEQVDSLPHIQLRGLMSIPQASDQADEQQAAFAVLHH 186
Query: 176 LLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ + C L LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 187 AFNKLQKTCNDLDTLSMGMSADMEAAIAEGSTVVRIGTDIFGPR 230
>gi|283479693|emb|CAY75609.1| UPF0001 protein yggS [Erwinia pyrifoliae DSM 12163]
Length = 266
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 32 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKTASAIEEAVAAGQCCFGENYVQEG 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 92 V-DKIQLLANPSLVWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSQQRPDTLAPLN 150
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + + +L + GLM IP N + ++A
Sbjct: 151 VLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDSQLAVCQQMA 210
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 211 TAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARD 256
>gi|325288842|ref|YP_004265023.1| protein of unknown function UPF0001 [Syntrophobotulus glycolicus
DSM 8271]
gi|324964243|gb|ADY55022.1| protein of unknown function UPF0001 [Syntrophobotulus glycolicus
DSM 8271]
Length = 229
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I +A + R + + LVAVSK V + + A + Q +F EN++QE
Sbjct: 1 MSIKQNLLDIRARIVRAAANSGRRIEDIKLVAVSKTVAIEGLAEAYAENQKVFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ D + IGSLQ+NKV + S +I ++ R L+ E K+
Sbjct: 61 WQDKYE--HLAADCEWHIIGSLQTNKVKYLNSRIVLIHSLDRLPLLEKLNSEGEKKGGVW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
+QVN + K+G+ N+ +DF+ ++ ++GLM I G + F+ L
Sbjct: 119 NALVQVNVARDEAKAGLEVNEVRDFIENAVAFPKVKIKGLMTIGALNATAGETRDCFHQL 178
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ K+ +LSMGM+ DFE AI GAT VRIGS IFG R
Sbjct: 179 RELRNSLQTVKYPEKIQELSMGMSDDFETAIEEGATIVRIGSRIFGHR 226
>gi|77166450|ref|YP_344975.1| hypothetical protein Noc_3003 [Nitrosococcus oceani ATCC 19707]
gi|254435047|ref|ZP_05048554.1| conserved hypothetical protein TIGR00044 [Nitrosococcus oceani
AFC27]
gi|76884764|gb|ABA59445.1| Protein of unknown function UPF0001 [Nitrosococcus oceani ATCC
19707]
gi|207088158|gb|EDZ65430.1| conserved hypothetical protein TIGR00044 [Nitrosococcus oceani
AFC27]
Length = 231
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 114/230 (49%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L +I + RPK SVSLVA SK IR A++CGQ F EN LQ
Sbjct: 1 MTQIAQQLAEVYTRIAQAEQRFGRPKGSVSLVAASKTCPVSAIRAAVACGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + ++ FIG +QSNK +I + FD + +V+R K A LS + +
Sbjct: 61 EALPKIKE-LETEGLEWHFIGPIQSNKTRDIATHFDWVHSVARLKIAQRLSQQRPPELAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E KSG + + + +L++ GLM +P + +
Sbjct: 120 LNVCLQVNISGESSKSGTTAQELAELATAVVEMPRLSLRGLMTLPALNSDLEAQRRPFRT 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGMT D E AIA GAT VR+G+ IFG RP +
Sbjct: 180 LHQLWEGLRQKGLTLDSLSMGMTDDLEAAIAEGATLVRVGTAIFGSRPRK 229
>gi|125973310|ref|YP_001037220.1| hypothetical protein Cthe_0792 [Clostridium thermocellum ATCC
27405]
gi|256003791|ref|ZP_05428779.1| alanine racemase domain protein [Clostridium thermocellum DSM 2360]
gi|281417513|ref|ZP_06248533.1| alanine racemase domain protein [Clostridium thermocellum JW20]
gi|125713535|gb|ABN52027.1| Protein of unknown function UPF0001 [Clostridium thermocellum ATCC
27405]
gi|255992352|gb|EEU02446.1| alanine racemase domain protein [Clostridium thermocellum DSM 2360]
gi|281408915|gb|EFB39173.1| alanine racemase domain protein [Clostridium thermocellum JW20]
gi|316940457|gb|ADU74491.1| alanine racemase domain protein [Clostridium thermocellum DSM 1313]
Length = 234
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++IE +A + R ++LVAV+K V+ ++I L G V EN++QE
Sbjct: 8 IKRNLYSVMERIEKAAQKSGRSAKDITLVAVTKTVEPERIMKILDEGVVDLGENRVQELT 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ + + IG LQ+NKV IV +I +V R + A + + + V
Sbjct: 68 KKY-DILNSRKCKWHLIGHLQTNKVKYIVDKVSLIHSVDRIELAREIQKRAESVGKTVDV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
+QVN E K G+ + V + V+GLM + P NP+ Y+ S++
Sbjct: 127 LVQVNVSGEKSKFGVSVDDAYGLVREISFMPNIRVKGLMTMAPYAENPESVRYVFSKLRD 186
Query: 181 ---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AI GA VRIG+ +FG R
Sbjct: 187 LSIDIGKEKFDNSNMEILSMGMSNDFEIAIEEGANMVRIGTALFGSR 233
>gi|289578636|ref|YP_003477263.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
gi|289528349|gb|ADD02701.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
Length = 234
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ K+ I+ A+ R + + +VA +K + I+ A++CG ENK+QE
Sbjct: 4 TICENIRKIKENIKEHALKVNRNPEEILIVAATKTFGVETIKEAIACGITDIGENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + +V FIG LQ NKV I+ +I ++ K A + +++ +
Sbjct: 64 NEKYP--YLKEEVNFHFIGHLQRNKVKYIIDKVKLIHSLDSIKLAEEIDKRAKQKNLIID 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLSE 179
+++N G E K GI P +FV + + + GLM I P +P+F + E
Sbjct: 122 CLVEINIGGEESKYGIPPEGMHNFVKEIEKYDNIRIRGLMTIAPYLPPEEVRPYFRKMKE 181
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E K + LSMGM+ D+ +A+ GA VRIG+ IFG+R
Sbjct: 182 LFEELKEIKQYNVEVEFLSMGMSNDYWVAVEEGANIVRIGTSIFGQRQYN 231
>gi|187476708|ref|YP_784731.1| hypothetical protein BAV0193 [Bordetella avium 197N]
gi|115421294|emb|CAJ47799.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 232
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L + +I + A RP SV+L+ VSK ++ +R A + G F ENK QE
Sbjct: 4 SMSARLAAIEHRIAQACERAARPAGSVTLLPVSKTFSAEAVREAAALGLRRFGENKTQEI 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K PL + IG LQ+NKV ++ ++++ R + A L + R L
Sbjct: 64 RQKADPLADL-GLSWVMIGHLQTNKVKDVARDVAEVQSLDRLELADALQRRLETAGRELD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQV T E K G+ P L + L V+GLM + + + F L
Sbjct: 123 VLIQVKTSPEPSKFGLPPETLPAMLTHLRQACPALRVQGLMTMAINSEDHAAVRACFRRL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L +LSMGM+ DFE+AI G+T VRIGS +FG R
Sbjct: 183 RELRDQHASSAVPLARLSMGMSGDFEIAIEEGSTEVRIGSALFGARNYP 231
>gi|302343632|ref|YP_003808161.1| alanine racemase domain protein [Desulfarculus baarsii DSM 2075]
gi|301640245|gb|ADK85567.1| alanine racemase domain protein [Desulfarculus baarsii DSM 2075]
Length = 227
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+++ +A A R SV LVAVSK +R A++ GQ+IF EN +QE
Sbjct: 1 MSVAANLAWVRQRMDAAARRAGRDPASVRLVAVSKTRPPDDLRQAMAAGQMIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + FIG+LQSNK + L +V+ +V R K A+ L + + + L
Sbjct: 61 LQAKAAAMGA--GPRWHFIGALQSNKARLVAQLAEVVHSVDRPKLAAALGRQAQELGKEL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QV+ E QK+G +T + L + GLM +PP P+ + +E+
Sbjct: 119 GVLVQVSLAGETQKAGCAAAETPALCQMIAATPGLRLLGLMTMPPFFDEPERARPIFAEL 178
Query: 181 AREC----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + +LSMGM+ DFE+AI GAT R+G+ IFG R
Sbjct: 179 RRLARRLAADLPPGAMNELSMGMSGDFEVAIEEGATLARVGTDIFGRR 226
>gi|300773349|ref|ZP_07083218.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759520|gb|EFK56347.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
Length = 244
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 15/234 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + + + + +I + A R + V L+ +K V + +I+ AL G + AENK+
Sbjct: 1 MSQEIIDNIALIQARIAQACTAAGRDRSEVKLLLATKTVPADRIKAALQAGHTLIAENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQS 117
QE K+K+ L+ V FIG LQ+NKV +++ +++ R + A L + ++
Sbjct: 61 QEIKEKYEALKDIPHVN-HFIGHLQTNKVKDLLKYDITCVQSLDRAELAQKLHQRLKAEN 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHF 174
R + V+IQVNT +E K G+ P++ D V L ++GLM I + F
Sbjct: 120 RTIEVFIQVNTSFEESKFGVSPHKVVDLVKEVALLDTLKIKGLMTIGLLSTESEKVRQCF 179
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL EI ++ ++ +LSMGM+ D E AIA GAT VR+G+ IFG+RP
Sbjct: 180 RLLKEIQQQIIALDIPHVEMRELSMGMSGDLETAIAEGATIVRVGTAIFGQRPT 233
>gi|332884875|gb|EGK05130.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas mossii DSM
22836]
Length = 244
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L V Q+I+ + R + V L+ +K V +++IR AL CG+ + ENK+QE
Sbjct: 3 TVKNNLFVIHQRIKVACDRTNRDVNDVRLLLATKTVPAERIRFALDCGETLIGENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ +++ + +IG LQ+NK+ E++ IE++ R L ++ + + +
Sbjct: 63 -KEKEEKLTQYNCEKHYIGHLQTNKIKEVLRYVTCIESIDRLDVVQKLDQRLLFEGKSID 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN+ YE K G+ P F+ + L ++GLM I + +
Sbjct: 122 ILVQVNSSYEESKFGLDPINVIPFIKKIAKYDTLKIKGLMTIGLFSAEEEKVRRCFRLLK 181
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+T+LSMGM+ D E+AI GAT +R+G+ IFGER
Sbjct: 182 DIQRQVIEENISNVDMTQLSMGMSGDLEVAIEEGATIIRVGTAIFGERIYP 232
>gi|294649640|ref|ZP_06727054.1| alanine racemase domain protein [Acinetobacter haemolyticus ATCC
19194]
gi|292824456|gb|EFF83245.1| alanine racemase domain protein [Acinetobacter haemolyticus ATCC
19194]
Length = 228
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 110/228 (48%), Gaps = 8/228 (3%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+L + Q +IE + +R SV L+AVSK S+ +R GQ F EN LQ
Sbjct: 1 MNLLQQQRQHVLMQIEQACQHVQRDPKSVQLLAVSKTHPSQSLRELYLAGQRSFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ +++ FIG +Q NK + FD + V R A LS + ++ +
Sbjct: 61 EALGKIEELQDL-EIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLETQKP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP------AMGNPKPH 173
L + IQVN + K G PN+ + V Q L + GLM IP
Sbjct: 120 LNICIQVNIDGQDSKDGCQPNEVSELVEQISQLPNLRLRGLMVIPAPDNVAAFADAKTLF 179
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ S A++ LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 180 DQVKSLHAQQQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGKRDYS 227
>gi|70733123|ref|YP_262896.1| hypothetical protein PFL_5838 [Pseudomonas fluorescens Pf-5]
gi|68347422|gb|AAY95028.1| conserved hypothetical protein TIGR00044 [Pseudomonas fluorescens
Pf-5]
Length = 232
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + ++I N+ +R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIADNIAQVAERIRNACQAVQRDPHSVQLLAVSKTKPAAALREAHAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQQELADL-PLSWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIAQRLSEQRPAELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKP 172
L + IQVN E KSG P +L + GLM IP +
Sbjct: 120 LNICIQVNVSGEASKSGCAPADLPALASAIGALPRLQLRGLMAIPEPTEDRAAQDAAFAA 179
Query: 173 HFYLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +++ KL LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VQRLNNDLRDSLKLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYS 230
>gi|91786307|ref|YP_547259.1| hypothetical protein Bpro_0397 [Polaromonas sp. JS666]
gi|91695532|gb|ABE42361.1| Protein of unknown function UPF0001 [Polaromonas sp. JS666]
Length = 238
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 104/238 (43%), Gaps = 20/238 (8%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + LQ+ + +I + + A R SV L+AVSK + + A+S GQ F EN +
Sbjct: 1 MTMIVRNLQLVRDRITTACVAAGRDPASVRLLAVSKTFGADAVIDAMSDGQRAFGENYVA 60
Query: 60 E--------AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + ++ IG +QSNK + FD +++V R KTA LS
Sbjct: 61 EGVEKILALRAWQAAQAGAPAVLEWHCIGPVQSNKTRLVAEHFDWVQSVDRLKTAQRLSE 120
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MG 168
+ L + +QVN KSG P + Q +L + GLM IP
Sbjct: 121 QRPPHLPPLQICLQVNVDGGANKSGAAPEEALALAQEIAQLPRLTLRGLMAIPEPAIDFV 180
Query: 169 NPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + + LSMGMT D E AI SG+T VR+G+ IFG+R
Sbjct: 181 AACAVHARTRAIFDQINAAGVLPAPMDTLSMGMTADLEAAIHSGSTMVRVGTAIFGKR 238
>gi|313200408|ref|YP_004039066.1| alanine racemase domain-containing protein [Methylovorus sp. MP688]
gi|312439724|gb|ADQ83830.1| alanine racemase domain protein [Methylovorus sp. MP688]
Length = 233
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 82/230 (35%), Positives = 116/230 (50%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +LQ + +I SA A R ++L+AVSK ++ IR + GQ F EN LQ
Sbjct: 1 MSAITERLQAVQARICQSATAAGRDPQEITLLAVSKAQNADAIRDVWAAGQQRFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ ++ FIG +QSNK I F + V R K A L+ +
Sbjct: 61 EALNK-QSLLQDLPIEWHFIGPIQSNKTQPIAQHFSWVHGVDRLKIAERLNAARPAELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L + +QVN +E KSGI P + Q +L + GLM IP P M + F +
Sbjct: 120 LQICLQVNVSHEESKSGIAPEEAYALASAITQLPRLQLRGLMAIPAPTPDMELQRAQFRM 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + L LS+GM+ DF +AI GAT VR+GS IFG RP +
Sbjct: 180 VRALYDALRQQGIALDTLSIGMSEDFPVAIGEGATIVRVGSAIFGPRPAK 229
>gi|319796099|ref|YP_004157739.1| alanine racemase domain protein [Variovorax paradoxus EPS]
gi|315598562|gb|ADU39628.1| alanine racemase domain protein [Variovorax paradoxus EPS]
Length = 233
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 106/228 (46%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +G+ LQ K +IE + + A R V L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MTMIGDDLQQVKNRIEAACVTAGRDPAGVRLLAVSKTFGADAVRDAHAAGQTAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L ++ IG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGLDKIEALADLRASLEWHCIGPLQSNKTRPVAEQFDWVHSIDRLKIAERLSAQRPAHLA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V +QVN KSG+ P + L + GLM IP P +
Sbjct: 121 PLNVCLQVNVDGGANKSGVPPEEAVALARAVAALPHLRLRGLMAIPEPAPDFAAQRDLCL 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K L LS+GM+ D E AI++G+T VR+G+ IFG R
Sbjct: 181 RAHAVFESIKGAGIALDTLSLGMSADLEAAISAGSTMVRVGTAIFGGR 228
>gi|227325976|ref|ZP_03830000.1| putative alanine racemase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 237
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIQQNLQDIRQQIATAAAHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E + + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPATLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM ++ + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISGEPSKSGIMVDELAELAASVAALPNLRLRGLMAIPAPETDYEQQLAVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAVLFQTLSANHPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYS 233
>gi|15895390|ref|NP_348739.1| TIM-barrel fold family protein [Clostridium acetobutylicum ATCC
824]
gi|15025111|gb|AAK80079.1|AE007713_4 Predicted enzyme with a TIM-barrel fold [Clostridium acetobutylicum
ATCC 824]
Length = 221
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + LQ K+KI V+LVAVSK + I+ A G F ENK+QE
Sbjct: 1 MGITYNLQKVKEKI----------PKEVTLVAVSKTKPIEDIKEAYEQGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + DV+ IG LQ NKV IV +I ++ K + +
Sbjct: 51 LMSKYDEMNS--DVRWHLIGHLQVNKVKYIVGKVFLIHSLDSIKLLKEIEKRYTNEGLKA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--LS 178
V I VN G E K+GI+ + + C++ +NV+GLM + P + Y +
Sbjct: 109 DVLIYVNIGREESKTGILEENLEALLDECQKCNSVNVKGLMAVIPVGDDNSNRHYFRKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + K + LSMGMT D+E+AIA GA VR+G GIFG+R
Sbjct: 169 AIFDDLKHKNIKNVDMKYLSMGMTHDYEIAIAEGANIVRVGEGIFGKRDYN 219
>gi|83721068|ref|YP_441835.1| hypothetical protein BTH_I1288 [Burkholderia thailandensis E264]
gi|167580664|ref|ZP_02373538.1| hypothetical protein BthaT_21093 [Burkholderia thailandensis TXDOH]
gi|167618767|ref|ZP_02387398.1| hypothetical protein BthaB_20827 [Burkholderia thailandensis Bt4]
gi|257138004|ref|ZP_05586266.1| hypothetical protein BthaA_02119 [Burkholderia thailandensis E264]
gi|83654893|gb|ABC38956.1| conserved hypothetical protein TIGR00044 [Burkholderia
thailandensis E264]
Length = 232
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L +++I+ +A A R +V+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L +++ FIG LQSNK + FD + T+ R K A L+ + L
Sbjct: 63 IDKIDSLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E KSG+ P+ + L + GLM IP +P + L
Sbjct: 123 NVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLRGLMAIPEPAADPEAKRAPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 183 HALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|307297025|ref|ZP_07576841.1| alanine racemase domain protein [Sphingobium chlorophenolicum L-1]
gi|306877551|gb|EFN08779.1| alanine racemase domain protein [Sphingobium chlorophenolicum L-1]
Length = 243
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++L + + +A L+ R D + L+AVSK + IR + GQ +F EN++QEA+
Sbjct: 9 ADRLAQVRDAMGRAARLSGRTADDIRLIAVSKTQGADAIRPLIEAGQRVFGENRVQEAES 68
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR+E+ D+ L +G LQSNK + V+LFDVI ++ R + L+ M + +P
Sbjct: 69 KWPGLREEFADLALHLVGQLQSNKAGDAVALFDVIHSLDRPSLLTALAKAMDAAGKRVPC 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
YIQVN G E QK G T + R + GLMC+PPA P P F LL+++AR
Sbjct: 129 YIQVNIGAEEQKGGCAIADTPALIRAARDADIPLL-GLMCVPPADVEPAPFFALLAKMAR 187
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E L +LSMGM+ DFE AI GAT +R+G+ +FGERP
Sbjct: 188 EEGLERLSMGMSGDFETAIMLGATDIRVGTALFGERPA 225
>gi|192291510|ref|YP_001992115.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
gi|192285259|gb|ACF01640.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 262
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 9/225 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L +++I + R V L+ V+K V + +R A + G F+ENKLQEA+
Sbjct: 24 AANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLRRAYAAGISEFSENKLQEARD 83
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + + ++ IG LQ+NKV +V + + A L+ + + R L V+
Sbjct: 84 KR-DILADLPIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLADELNRRLDAEGRDLDVF 142
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
+QVNT E K G+ P F+ +L GLM + + F LL ++
Sbjct: 143 VQVNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLMTLAIFSAETERVRGCFRLLRDL 202
Query: 181 ARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT+LSMGM+ DFE AI GAT VR+G IFG RP
Sbjct: 203 RDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQAIFGARPT 247
>gi|254460609|ref|ZP_05074025.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
HTCC2083]
gi|206677198|gb|EDZ41685.1| conserved hypothetical protein TIGR00044 [Rhodobacteraceae
bacterium HTCC2083]
Length = 218
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + + + A R S L+AVSK+ ++++ L G +F EN++QE
Sbjct: 1 MSLKE----IQDRFAKAENDAGRSAGSAQLIAVSKVQPNERVHAVLKQGHRVFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW ++E+ D+ + IG LQ+NK + + LFD I TV R K A ++ + R
Sbjct: 57 AAGKWPAFKEEFSDISVHLIGPLQTNKARQAMELFDAIHTVDRAKLAKTIARLAQELGRC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P + F+ CR L V+GLMCIPPA P HF LL++
Sbjct: 117 PELFVQVNTGEEEQKAGVSPQEADGFIEECRS-LDLPVQGLMCIPPADEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L+ LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 176 IAARNGLSALSMGMSGDFERAIALGATHVRVGSAIFGDRAY 216
>gi|87120925|ref|ZP_01076817.1| Predicted enzyme with a TIM-barrel fold [Marinomonas sp. MED121]
gi|86163763|gb|EAQ65036.1| Predicted enzyme with a TIM-barrel fold [Marinomonas sp. MED121]
Length = 229
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + +I + +R SV L+AVSK I A + GQ +F EN +QE
Sbjct: 1 MAIAENIEKTQAEITSFEQKYQRALGSVKLLAVSKTKPVSAIEEAYAQGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ FIG +QSNK + + T+ R K A L+ + L
Sbjct: 61 AADKSQQLTHLKGIEWHFIGPIQSNKTRILAQSMHWVHTLERAKIAQRLNEQRPADLPKL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-------GNPKPH 173
V IQ+N E KSGI + + V + R + L + GLM IP +P
Sbjct: 121 NVCIQINISGEESKSGISLAELDELVEIVRNQPNLILRGLMAIPAPQVSLADQLATYQPL 180
Query: 174 FYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +A + + LS+GM+ D E AIASG++ VRIG+ IFG R
Sbjct: 181 YEAYHALAESVETVDTLSIGMSGDMEAAIASGSSMVRIGTAIFGARNY 228
>gi|325509536|gb|ADZ21172.1| enzyme with a TIM-barrel fold protein [Clostridium acetobutylicum
EA 2018]
Length = 221
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + LQ K+KI V+LVAVSK + I+ A G F ENK+QE
Sbjct: 1 MGITYNLQKVKEKI----------PKEVTLVAVSKTKPIEDIKEAYEQGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + DV+ IG LQ NKV IV +I ++ K + +
Sbjct: 51 LMSKYDEMNS--DVRWHLIGHLQVNKVKYIVGKVFLIHSLDSIKLLKEIEKRYTNEGLKA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--LS 178
V I+VN G E K+GI+ + + C++ +NV+GLM + P + Y +
Sbjct: 109 DVLIEVNIGREESKTGILEENLEALLDECQKCNSVNVKGLMAVIPVGDDNSNRHYFRKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + K + LSMGMT D+E+AIA GA VR+G GIFG+R
Sbjct: 169 AIFDDLKHKNIKNVDMKYLSMGMTHDYEIAIAEGANIVRVGEGIFGKRDYN 219
>gi|213963787|ref|ZP_03392036.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sputigena
Capno]
gi|213953563|gb|EEB64896.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sputigena
Capno]
Length = 242
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +Q+I + A R + V L+ +K V ++I++AL G + AENK+QE
Sbjct: 3 NILQNIELIQQRIAKACAKAGRKPEEVKLLLATKTVTPERIKIALEAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ EI+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDTPHTN-HFIGHLQTNKIKEILRYEVSCVESVDRLDLAQKLHNRLASEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
++IQVNT E K G P++ D V L+++GLM + F LL
Sbjct: 122 DIFIQVNTSNEESKFGADPSEVLDLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFQLL 181
Query: 178 SEIARE---CKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I ++ L +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KRIQQDIIALNLPNVDPKELSMGMSGDLETAIEEGATIVRVGTAIFGQRIYP 233
>gi|152971903|ref|YP_001337012.1| PLP-binding domain-containing protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896482|ref|YP_002921220.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
NTUH-K2044]
gi|262042603|ref|ZP_06015759.1| YggS family pyridoxal phosphate enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|329998591|ref|ZP_08303175.1| pyridoxal phosphate enzyme, YggS family [Klebsiella sp. MS 92-3]
gi|150956752|gb|ABR78782.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548802|dbj|BAH65153.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040037|gb|EEW41152.1| YggS family pyridoxal phosphate enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|328538610|gb|EGF64710.1| pyridoxal phosphate enzyme, YggS family [Klebsiella sp. MS 92-3]
Length = 233
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 61 EGVEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + L + GLM IP F +
Sbjct: 121 PPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|307260503|ref|ZP_07542197.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869815|gb|EFN01598.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 227
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG+LQSNK + FD I+TV R K A LS + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEAYKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 RQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|304316673|ref|YP_003851818.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778175|gb|ADL68734.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 233
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 12/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ K IE A R D + ++AV+K VD ++I+ A+ G ENK+QE
Sbjct: 1 MDIRLNLEEIKNNIEVHARKVNRNPDDILIMAVTKTVDVERIQEAIDNGITDIGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + VQ FIG LQ+NKV I+ +I ++ A ++ + +
Sbjct: 61 LIDKYPA--LKDKVQFHFIGHLQTNKVKYIIDKVKMIHSLDSIHLAQEINKRAHSNNIVM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
++VN G E K GI P DF+ + + GLM + P M + P+F +
Sbjct: 119 DCLVEVNIGSEESKYGIDPLNVMDFIKSLESFDNIRIRGLMTVAPFMEPEQVRPYFKKMK 178
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + LSMGMT D+ +A+ G+ VRIG+GIFG+R
Sbjct: 179 ELFDCAKSINQKNVDFKYLSMGMTNDYTVAVEEGSNIVRIGTGIFGKRLYN 229
>gi|258593029|emb|CBE69340.1| putative enzyme [NC10 bacterium 'Dutch sediment']
Length = 237
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 120/227 (52%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++++ +Q++ +A R D ++LVAV+K V +IR A+ G ++ EN++QEA
Sbjct: 10 VKDRIEQVRQRMAEAAHRVGRDPDEIALVAVTKTVPIPRIREAIDVGVMLLGENRVQEAS 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L V IG LQ+NK LF +I ++ K A L ++ + V
Sbjct: 70 DKM-ALLSSLPVTWHLIGHLQTNKSRSAAELFGLIHSLDSVKLAVALDRHGAALAKQIRV 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN G E K+G++ + + CRQ L +EGLM +PP NP +P F L
Sbjct: 129 LVEVNLGGEPSKTGVLEHDLVPLLESCRQFTHLVIEGLMAVPPFRRNPEDVRPFFRRLRL 188
Query: 180 IARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ E C L LSMGM+ D+E+AI GAT VRIG+ IF ERP
Sbjct: 189 LRDEAARACPDCPLRHLSMGMSHDYEIAIEEGATLVRIGTAIFDERP 235
>gi|120603948|ref|YP_968348.1| alanine racemase [Desulfovibrio vulgaris DP4]
gi|304569675|ref|YP_009276.2| hypothetical protein DVU0051 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564177|gb|ABM29921.1| alanine racemase domain protein [Desulfovibrio vulgaris DP4]
Length = 242
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L + + ++E + A R V+LVAVSK ++ + + GQ F EN +
Sbjct: 6 MNTPLAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYV 65
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK--- 115
QEA +K D+ IG +QS K ++ F +I TV EK A L + +
Sbjct: 66 QEALQKQEA-LAGEDILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPED 124
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
V +QVN G E+QKSGI +T Q L + GLMC+PP +
Sbjct: 125 DTCPVVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAA 184
Query: 171 KPHFYLLSEIARECKL------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+P F L ++ + +L LSMGM+ DFE A+ GAT VR+G+ IFG RP +
Sbjct: 185 RPFFAALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRPPR 241
>gi|311232396|gb|ADP85250.1| alanine racemase domain protein [Desulfovibrio vulgaris RCH1]
Length = 243
Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L + + ++E + A R V+LVAVSK ++ + + GQ F EN +
Sbjct: 7 MNTPLAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYV 66
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK--- 115
QEA +K D+ IG +QS K ++ F +I TV EK A L + +
Sbjct: 67 QEALQKQEA-LAGEDILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPED 125
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
V +QVN G E+QKSGI +T Q L + GLMC+PP +
Sbjct: 126 DTCPVVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAA 185
Query: 171 KPHFYLLSEIARECKL------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+P F L ++ + +L LSMGM+ DFE A+ GAT VR+G+ IFG RP +
Sbjct: 186 RPFFAALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRPPR 242
>gi|46447879|gb|AAS94535.1| conserved hypothetical protein TIGR00044 [Desulfovibrio vulgaris
str. Hildenborough]
Length = 237
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 17/237 (7%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L + + ++E + A R V+LVAVSK ++ + + GQ F EN +
Sbjct: 1 MNTPLAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK--- 115
QEA +K D+ IG +QS K ++ F +I TV EK A L + +
Sbjct: 61 QEALQKQEA-LAGEDILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPED 119
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
V +QVN G E+QKSGI +T Q L + GLMC+PP +
Sbjct: 120 DTCPVVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAA 179
Query: 171 KPHFYLLSEIARECKL------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+P F L ++ + +L LSMGM+ DFE A+ GAT VR+G+ IFG RP +
Sbjct: 180 RPFFAALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRPPR 236
>gi|206579525|ref|YP_002236597.1| alanine racemase family [Klebsiella pneumoniae 342]
gi|206568583|gb|ACI10359.1| alanine racemase family [Klebsiella pneumoniae 342]
Length = 233
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 61 EGVEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + L + GLM IP F +
Sbjct: 121 PPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 QQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|260655189|ref|ZP_05860677.1| pyridoxal phosphate enzyme, YggS family [Jonquetella anthropi E3_33
E1]
gi|260630111|gb|EEX48305.1| pyridoxal phosphate enzyme, YggS family [Jonquetella anthropi E3_33
E1]
Length = 230
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 99/228 (43%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQE 60
+ ++ +I +A + R + V+LVAVSK I A+ G EN++QE
Sbjct: 3 TFEERIGEVLDRISQAAARSGRKRGDVTLVAVSKTKPLDMIIRAVQTGLITDLGENRVQE 62
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K V+ IG LQ NK + + LF I++V K A L +
Sbjct: 63 GMEKIPAWPAGLPPVKWHLIGQLQRNKARKALELFHSIQSVDSVKLAQRLQDIAAELGVR 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
PV ++VNT E KSG Q +L+ +GLM + P + +
Sbjct: 123 RPVLLEVNTSLEESKSGCALADAPIIADALVQCGRLDWQGLMTVGPLTDDKDQIRRSFAA 182
Query: 180 IAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ELAI G+T VR+G+ IFG R
Sbjct: 183 LRDCAEGLRKRTGLSLPVLSMGMSGDYELAIEEGSTMVRVGTAIFGAR 230
>gi|134093571|ref|YP_001098646.1| hypothetical protein HEAR0290 [Herminiimonas arsenicoxydans]
gi|133737474|emb|CAL60517.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 234
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 105/232 (45%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I ++A A+R V L+AVSK + + A GQ F EN LQ
Sbjct: 1 MSVIRQNLQAVRQRITDAANSAQRDVHEVELLAVSKTFGADAVLAAAEAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K +R + FIG +QSNK I FD + V REK A LS +
Sbjct: 61 EALDKMDAVRAIRPDLPLEWHFIGPVQSNKTRPIAEHFDWVHAVDREKIAHRLSEQRPAT 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + +QVN E KSG +P + L + GLM IP +
Sbjct: 121 LPPLNICLQVNISGEASKSGALPADAPGLAKAIAKLPHLRLRGLMAIPEPEDDEVRQRRS 180
Query: 177 LSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ A L LSMGM+ D AIA GAT VRIGS IFG R
Sbjct: 181 FHQLRVLYEQLRAEGLPLDTLSMGMSADMPAAIAEGATIVRIGSAIFGTRNY 232
>gi|84687982|ref|ZP_01015846.1| alanine racemase domain protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664014|gb|EAQ10514.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2654]
Length = 217
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 92/215 (42%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L QKI + R S L+AVSK+ +I L G +F ENK+QEA KW
Sbjct: 3 LSDILQKIRDEEARVGREAGSTRLIAVSKVQPLDRIVSVLDEGHRLFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR ++ ++L IG LQ+NK + + LFD IETV R K A ++ + +++Q
Sbjct: 63 DLRARYESIELHLIGPLQTNKARQAMELFDAIETVDRPKLAKTIARLAEELGHCPKLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+MP F+ + L + GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEEQKAGVMPGDADAFI-ADCRDLGLTIAGLMCIPPVDEEPSLHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ DFE A+A GAT VR+GS IFGER
Sbjct: 182 LDELSMGMSGDFEKAVAQGATYVRVGSAIFGERVY 216
>gi|332283446|ref|YP_004415357.1| hypothetical protein PT7_0193 [Pusillimonas sp. T7-7]
gi|330427399|gb|AEC18733.1| hypothetical protein PT7_0193 [Pusillimonas sp. T7-7]
Length = 250
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I +AI A R DSV+L+ VSK IR A+ G F ENK QE
Sbjct: 6 TIAARLSQVQDRIRKTAIQAGRSADSVTLLPVSKTFGEDAIREAVKAGVYRFGENKAQEI 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K+ P + D+ IG LQ+NK ++ + I+++ R A L + ++ R +
Sbjct: 66 RSKFEP-LADCDIDWVMIGHLQTNKAKDVARMASEIQSLDRMDLAIALDRRLQQEGRAID 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
+QV T E K G+ P + F+ R L ++GLM + + F L
Sbjct: 125 ALVQVKTSSEPSKYGLPPEELPGFLRQVARDIPTLRIKGLMTLAINAADDAAVRACFRTL 184
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + +L +LSMGM+ DFE+AI G+T VRIG+ IFG R
Sbjct: 185 RELRDQMRQEDIAGIELDRLSMGMSGDFEIAIEEGSTEVRIGTAIFGGRIY 235
>gi|238754611|ref|ZP_04615965.1| alanine racemase [Yersinia ruckeri ATCC 29473]
gi|238707242|gb|EEP99605.1| alanine racemase [Yersinia ruckeri ATCC 29473]
Length = 237
Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I A +R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRDRIATIAKNCERSPEEITLLAVSKTKPVAAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +++ FIG LQSNK + F TV R K A+ LS + + L
Sbjct: 63 VDKIHYFAGNTELEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIATRLSEQRPAEMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSGI + + L + GLM IP + + ++
Sbjct: 123 ILIQVNISDEQSKSGIKLAELPELAANIHDLPHLRLRGLMAIPAPESHFDRQLAVFQQMN 182
Query: 182 REC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ LSMGMT D AI +G+T VRIG+ IFG R +
Sbjct: 183 QAFLALKKHYPQMDTLSMGMTDDMAAAIGAGSTLVRIGTAIFGARDYGS 231
>gi|207724413|ref|YP_002254810.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum MolK2]
gi|206589634|emb|CAQ36595.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum MolK2]
Length = 226
Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats.
Identities = 99/217 (45%), Positives = 134/217 (61%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + I+++AI + R ++V+LVA SK V+ I+ A+ G +F EN++QEA
Sbjct: 5 LEDNIGRITKAIQHAAIDSGRHANAVTLVAASKTVEPHHIQQAIDLGLTVFGENRVQEAV 64
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + ++L IG LQSNKV + V LFD IE+V R K A ++ E KQ
Sbjct: 65 TKWPELRSRNTGIELHLIGPLQSNKVRQAVGLFDAIESVDRAKLARAIAEEAEKQGHDPA 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+YIQVN G E QKSG++P + + CR+ YQLNV+GLMCIPPA +P HF L IA
Sbjct: 125 IYIQVNVGKEPQKSGVLPAEAPALIRECREVYQLNVQGLMCIPPAGLDPCAHFACLRSIA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ AIA GAT VR+GS IFG R
Sbjct: 185 EDHGLRALSMGMSADYLQAIAQGATHVRVGSSIFGAR 221
>gi|254363058|ref|ZP_04979117.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
gi|153094723|gb|EDN75513.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
Length = 225
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 110/226 (48%), Gaps = 10/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ + +R +V L+AVSK + I+ A+ GQ F EN +QE
Sbjct: 1 MSIAENLSQIHQQIQQISEQYQRD--NVRLLAVSKTKPVEAIQAAIEAGQRAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K +++ FIG LQSNK + + FD I+TV R K A L+ + L
Sbjct: 59 AVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLKIAERLNEQRPADKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
V IQ+N E KSGI P++ Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMAIPKPESEPEQQKVAFRKM 178
Query: 180 --IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D + AI G+T VRIG+ IFG R
Sbjct: 179 QLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGTAIFGAR 224
>gi|88801062|ref|ZP_01116610.1| hypothetical protein MED297_19052 [Reinekea sp. MED297]
gi|88776201|gb|EAR07428.1| hypothetical protein MED297_19052 [Reinekea sp. MED297]
Length = 235
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 107/229 (46%), Gaps = 9/229 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ ++L KI + RP+ V+LVAVSK + ++R A G F EN QE
Sbjct: 4 LSVTSRLAQVNAKIHAACTKNDRPESEVTLVAVSKTKPAARVREAWEAGARHFGENYAQE 63
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K K Q FIG LQSNK I D + T+ R K A LS + L
Sbjct: 64 LAEKVQE-LKLDKAQWHFIGPLQSNKTRLIAEHADWVHTIDRLKIARRLSDQRPPDRAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN + K+G+ +Q L + GLM I A + E+
Sbjct: 123 NVLIQVNISDDPAKAGVDLSQIAGLADRIATLPNLTLRGLMTITAANLDEATLAAQFREL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
T++SMGM++DFELAIA+GAT VR+GS IFG R +
Sbjct: 183 KNAQADLITHHPTCTEVSMGMSQDFELAIANGATMVRVGSDIFGHRAPK 231
>gi|163859053|ref|YP_001633351.1| hypothetical protein Bpet4732 [Bordetella petrii DSM 12804]
gi|163262781|emb|CAP45084.1| conserved hypothetical protein [Bordetella petrii]
Length = 246
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +Q+++ + A R +SV+L+ VSK + +R A + G F ENK QE
Sbjct: 12 SMAARVARVRQRMDAACARAGRAPESVTLLPVSKTFGPEAVREAAALGLRRFGENKTQEI 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K PL D+Q IG LQ+NK + ++++ R A L + + R +
Sbjct: 72 RQKAGPLADL-DIQWVMIGHLQTNKAKDAARHAAEVQSLDRLDLAYALQRRLQAEGRAID 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV T E K G+ F+ + L V+GLM + + + F L
Sbjct: 131 VLVQVKTSPEPSKHGLDMQAVSSFLRIVAGDCPALRVQGLMTLAVQSDDTAAVRACFRAL 190
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + L +LSMGM+ DFE+AI GAT VR+GS IFG R
Sbjct: 191 RELRDRLRDENIPDVRLDRLSMGMSGDFEIAIEEGATEVRVGSAIFGTRTY 241
>gi|89902638|ref|YP_525109.1| hypothetical protein Rfer_3879 [Rhodoferax ferrireducens T118]
gi|89347375|gb|ABD71578.1| Protein of unknown function UPF0001 [Rhodoferax ferrireducens T118]
Length = 239
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 107/226 (47%), Gaps = 9/226 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + ++ + A R V+L+AVSK V + + A GQ F EN +QEA
Sbjct: 8 LQTQLQSVRARVTTACQAAGRAASEVTLLAVSKTVAPEIVTQAFEAGQRAFGENYIQEAV 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + ++ IG +QSNK + FD ++T+ R K A LS + L V
Sbjct: 68 EKIS-HLRHLPLEWHCIGPIQSNKTRLVAEHFDWVQTLDRLKIAQRLSDQRPAGRPPLQV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN KSG+ P++ + L + G+M IP + L + +
Sbjct: 127 CIQVNVDGGASKSGVSPSEALALAQRVAELPNLRLRGIMSIPEPTPDFVAACALFARVKA 186
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A L LSMGM+ D E AI SG+T VR+G+ IFG RP
Sbjct: 187 VFDALNAEGLALDTLSMGMSADMEAAIQSGSTMVRVGTAIFGGRPP 232
>gi|294634381|ref|ZP_06712918.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella tarda ATCC
23685]
gi|291092189|gb|EFE24750.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella tarda ATCC
23685]
Length = 280
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 109/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L +Q+I +A R +++L+AVSK I A++ GQ F EN +QE
Sbjct: 48 TIEHQLNAVRQRIARAAEQCGRDPHTITLLAVSKTKPIADIDAAIAAGQRAFGENYVQEG 107
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K R++ FIG LQSNK + FD I T+ R K A L+ +
Sbjct: 108 VSKIQHYRQQPGETTLTWHFIGPLQSNKSRLVAEHFDWIHTIDRVKIAQRLNEQRPATLA 167
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q L + GLM IP +P +
Sbjct: 168 PLNVLIQVNISDEQSKSGIALEQVDALADAISQLPNLRLRGLMAIPAPEDDPARQLAVCR 227
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A+ +L LS+GMT D E AIA+G+T VRIG+ IFG R
Sbjct: 228 RMAQALQTLQQRYPQLDTLSLGMTHDMEAAIAAGSTLVRIGTAIFGARDY 277
>gi|126724360|ref|ZP_01740203.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126705524|gb|EBA04614.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2150]
Length = 217
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 80/216 (37%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +I A S L+AVSK+ ++++ L G +F ENK+QEA KW
Sbjct: 3 YKEILDRIAAKEKAAGCSGQS-KLIAVSKVQPNERVAAVLDQGHRLFGENKVQEAAGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++ V + +G +Q+NK + + LF I ++ R K A+ L+ + ++IQ
Sbjct: 62 EFREKYGAVDVHLLGPVQTNKARQAMELFQAIHSLDRPKLANTLARLAQELGHCPDLFIQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P + + L V GLMCIPP P PHF L +A+
Sbjct: 122 VNTGAEPQKAGILPEDADK-FVETCRALDLPVIGLMCIPPFEEPPAPHFVALGHMAKRNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AI GAT +R+GS IFG R +
Sbjct: 181 LACLSMGMSGDFEEAIEHGATHIRVGSAIFGNRDYR 216
>gi|304413270|ref|ZP_07394743.1| alanine racemase N-terminal domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
gi|304284113|gb|EFL92506.1| alanine racemase N-terminal domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
Length = 230
Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + K++I ++A R VSL+AVSK I+ A++ GQ F EN +QEA
Sbjct: 3 TIQQNIHDVKKQIASAAEHCGRSPKEVSLLAVSKTQSVSAIKKAINAGQYAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV K A LS + L
Sbjct: 63 IDKIAYFAHHSKLEWHFIGLLQSNKSRLVAEYFTWCHTVDSLKIAQRLSHQRPGNMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI N+ L + GLM IP A + + ++
Sbjct: 123 ILIQINISGEKSKSGISLNELPQLAENIYTLPNLQLRGLMAIPAADNDYPRQLAIFQQMH 182
Query: 182 REC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LS+GMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QAFLLLKENYPQVDTLSLGMTHDMTAAIHAGSTLVRIGTAIFGSR 227
>gi|260552476|ref|ZP_05825852.1| TIM-barrel fold family protein [Acinetobacter sp. RUH2624]
gi|260405283|gb|EEW98779.1| TIM-barrel fold family protein [Acinetobacter sp. RUH2624]
Length = 235
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 108/229 (47%), Gaps = 12/229 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I + A+R ++V L+AVSK S+++R + GQ F EN LQ
Sbjct: 6 MNYLQDARQHVLQQIRTACEHAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L D++ FIG +Q NK + FD + V R A LS +
Sbjct: 66 EALDKIEALHDL-DIEWHFIGHVQRNKTKHLAEEFDWVHGVDRLIIAERLSNQRGDDQAA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + + V Q ++ + GLM IP +
Sbjct: 125 LNICLQVNIDGQDTKDGCAPEEVAELVAQISQLPKIKLRGLMVIPAPDNIAAFADA--KK 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K LSMGM+ D + AI +G+T VR+G+ +FG+R
Sbjct: 183 LFDEVKEQHAHAQDWDTLSMGMSGDLDAAIVAGSTMVRVGTALFGKRDP 231
>gi|146284538|ref|YP_001165491.1| alanine racemase domain-containing protein [Enterobacter sp. 638]
gi|145320671|gb|ABP62817.1| alanine racemase domain protein [Enterobacter sp. 638]
Length = 269
Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats.
Identities = 69/224 (30%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I+ + + R V L+ VSK +D K IR+A G ENK+QEA
Sbjct: 34 DFIDNLAAVQSRIDAACQRSGRNVSDVRLLPVSKTMDEKHIRMAHQAGCNFLGENKVQEA 93
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + D++ IG LQSNK + + + TA +L + + R L
Sbjct: 94 WRKSQAMLDLTDLKWSVIGHLQSNKAKLVARFASEFQALDSFNTAEILDRRLQVEGRTLN 153
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
V++QVNT E K G+ P DF+ + + GLM + + F L
Sbjct: 154 VFVQVNTSAEPSKFGLAPETVVDFMAQLSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLR 213
Query: 179 EIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + +LSMGM+ DFE+AI GA VR+G IFG R
Sbjct: 214 KLRDQLANVYGNLQLSMGMSGDFEIAIEEGANIVRVGQAIFGAR 257
>gi|78065293|ref|YP_368062.1| hypothetical protein Bcep18194_A3817 [Burkholderia sp. 383]
gi|77966038|gb|ABB07418.1| protein of unknown function UPF0001 [Burkholderia sp. 383]
Length = 257
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ Q+I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 26 MSDLAARLESVHQRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 85
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L D++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 86 ESIDKIDALADLRADLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 145
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 146 PLNVCVQVNISGEASKSGVAPGDVAEVARAVAALPSLRLRGLMAIPEPAGDTEAQRAPHR 205
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 206 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYS 256
>gi|254515818|ref|ZP_05127878.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR5-3]
gi|219675540|gb|EED31906.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR5-3]
Length = 230
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + Q++ N+ RP SV ++AVSK ++ +R A + G F EN LQEA
Sbjct: 5 SIPANIAKVLQQVSNAVEKYHRPPQSVRVMAVSKTQSAEAVRTAANAGLTDFGENYLQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + FIG +QSNK I + F + +V REK LS + L
Sbjct: 65 LDKIAACEDL-GLTWHFIGPIQSNKTRPIATSFHWVHSVDREKILRRLSEQRDANLPALN 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ IQVN E KSG+ P + L L + GLM IP A + K L++
Sbjct: 124 ICIQVNVSREASKSGVAPEDLPPLLALTAGLPNLELRGLMAIPAASDDFATQKQACDLMA 183
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E + L LSMGM+ D E A+A+G+ +RIG+ IFG R
Sbjct: 184 TLFHEAQSQYPSLDTLSMGMSADLEAAVAAGSNMLRIGTAIFGAR 228
>gi|148550169|ref|YP_001270271.1| alanine racemase domain-containing protein [Pseudomonas putida F1]
gi|148514227|gb|ABQ81087.1| alanine racemase domain protein [Pseudomonas putida F1]
Length = 228
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 100/226 (44%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + L +I ++A R SV L+AVSK + IR + G F EN LQ
Sbjct: 1 MSTLADNLSAISARIASAAQAVGRDPASVQLLAVSKTKPASAIREIHAAGVRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALTKQQALSDL-PLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPKPTEDRATQEAAFAS 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRKLQEGLGFGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|13473468|ref|NP_105035.1| hypothetical protein mlr4078 [Mesorhizobium loti MAFF303099]
gi|14024217|dbj|BAB50821.1| mlr4078 [Mesorhizobium loti MAFF303099]
Length = 220
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 112/211 (53%), Positives = 143/211 (67%), Gaps = 1/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
K KI + A+R +V+LVAVSK D+ IR + GQ +F EN++QEA+ KW L
Sbjct: 10 AVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQEAQGKWPDL 69
Query: 69 RKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
++ + D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ +Q R +Y+QVN
Sbjct: 70 KQAFADIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGRAPKLYVQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+GI P FV CR + L +EGLMCIPPA NP PHF LL ++ARE +
Sbjct: 130 TGSEPQKAGIEPRAAIAFVTRCRDVHGLAIEGLMCIPPADENPGPHFALLEKLAREAGVE 189
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 190 KLSMGMSGDYETAIAFGATSVRVGSAIFGSR 220
>gi|320354290|ref|YP_004195629.1| alanine racemase domain-containing protein [Desulfobulbus
propionicus DSM 2032]
gi|320122792|gb|ADW18338.1| alanine racemase domain protein [Desulfobulbus propionicus DSM
2032]
Length = 235
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 90/228 (39%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L I +A + R D+V LVAVSK V + I A++ GQ++F EN LQEA
Sbjct: 2 IVDNLTRILTTIATAARRSGRHPDTVQLVAVSKQVGVEAICEAVAGGQMLFGENYLQEAA 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L VQ FIG LQSNK +++ LF ++ETV R K A L L + + L +
Sbjct: 62 DKIPQLPPT--VQWHFIGHLQSNKAAQVAELFTMVETVDRFKVAKALDLHAKRLDKHLSI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN G E QKSG+MP +T + + + L V GLM +PP +P +P+F L E
Sbjct: 120 LIQVNIGREKQKSGVMPEETTELLHAISAETNLRVRGLMALPPFFSDPEKSRPYFRALRE 179
Query: 180 IARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A++ + +LSMGM+ D+ +AI GAT VR+G+ +FG R
Sbjct: 180 LAQQLAVKKLFHDNDAIELSMGMSNDYPVAIEEGATIVRVGTALFGSR 227
>gi|150021415|ref|YP_001306769.1| alanine racemase domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149793936|gb|ABR31384.1| alanine racemase domain protein [Thermosipho melanesiensis BI429]
Length = 228
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 9/221 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ I+ A+ R +++ LVAVSK + I+ A G IF EN QE + K
Sbjct: 8 RYYNVLDSIKEKALEVGRDYNNIKLVAVSKTFPVEVIKEAYEIGIRIFGENYAQELRDK- 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + +D++ +IG +Q NK+ IV + +I +V+R + ++ K ++ + IQ
Sbjct: 67 SKLLESYDIEWHYIGRIQLNKLKYIVPVSRLIHSVTRIEELKEINKLCRKYNKVQEILIQ 126
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IAR 182
VN E K+G+ P++ DF+ ++ + G M + P N + + +
Sbjct: 127 VNISGEETKAGLKPDEVGDFLRETVDFERVKIVGFMTMAPFTDNKEIIRNVFKNARVLLE 186
Query: 183 EC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ +AI GAT +RIGS IFGER
Sbjct: 187 KFSSEFSNLKELSMGMSNDYLIAIEEGATILRIGSKIFGER 227
>gi|319761216|ref|YP_004125153.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
gi|317115777|gb|ADU98265.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
Length = 240
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 15/234 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
++ LQ ++I + A RP SV+L+AVSK ++ + A GQ F EN +QE
Sbjct: 3 TIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAESVHAAALAGQRAFGENYIQEA 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
L +Q IG +QSNK + FD +TV R K A LS +
Sbjct: 63 VEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVN KSG+ P+ + +L + G+M IP P +
Sbjct: 123 PLMVCIQVNVDGGATKSGVGPHDAAALAEAVARLPRLVLRGVMSIPDDAPTFEAQRALHE 182
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K LSMGMT D E A+A+G+T VR+GSG+FG R
Sbjct: 183 RAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGARQY 236
>gi|323704172|ref|ZP_08115751.1| alanine racemase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323536238|gb|EGB26010.1| alanine racemase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 233
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K+ ++ A+ R D + +VAV+K VD +I A+ G ENK+QE
Sbjct: 1 MDIRYNIDKVKENVKKHALKVNRNPDDILIVAVTKTVDVSRIEEAIKYGITDIGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ VQ FIG LQ+NKV ++ +I ++ + A + K +R +
Sbjct: 61 LVDKYP--TLMDKVQFHFIGHLQTNKVKYVIDKVKMIHSLDSVRLAEEIDKRAKKCNRIM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
I+VN G E K GI P+ +F+ L ++GLM + P + + +P+F +
Sbjct: 119 DCLIEVNVGSEESKYGIEPSSLLEFIKELESFDNLKIKGLMTVAPYVDAEDVRPYFRKMK 178
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + LSMGMT D+ +A+ GA +RIG+GIFG+R
Sbjct: 179 ELFDNTKSLNQKNLDFKYLSMGMTNDYTVAVEEGANIIRIGTGIFGKRLY 228
>gi|126736208|ref|ZP_01751951.1| hypothetical protein RCCS2_10735 [Roseobacter sp. CCS2]
gi|126714374|gb|EBA11242.1| hypothetical protein RCCS2_10735 [Roseobacter sp. CCS2]
Length = 228
Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 92/221 (41%), Positives = 126/221 (57%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +A A R +SL+AVSK+ +++ L G IF ENK+QE
Sbjct: 12 MSLSE----ITARMSKAAEKAGRSMHELSLIAVSKVQPDARVKAVLDEGHRIFGENKVQE 67
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+ + ++L IG LQ+NK + + L D I TV R K A+ ++
Sbjct: 68 AAGKWPEFREHYTGIKLHLIGPLQTNKTKQAMQLADAIHTVDRPKLANTIARHAQDLGSC 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G++P + F+ R L ++GLMCIPP P HF LL++
Sbjct: 128 PDLFIQVNTGEEQQKAGVLPAEADAFIAEVRA-LDLPLKGLMCIPPVDEEPSLHFALLAK 186
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA LT LSMGM+ DFE AIA GAT +R+GS IFGER
Sbjct: 187 IAARNDLTDLSMGMSSDFESAIALGATHIRVGSAIFGERVY 227
>gi|331001802|ref|ZP_08325324.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412776|gb|EGG92159.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae oral taxon
107 str. F0167]
Length = 226
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + ++ N+ + R D ++L+AVSK ++ I A G F ENK+QE
Sbjct: 2 VKENLKNIRDEMNNACERSNRNLDDITLIAVSKTKPNELIMEAYESGVRDFGENKVQELL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K DV+ IG LQ+NKV +++ +I ++ + A + E K+ +
Sbjct: 62 RKKEE--LPDDVRWHMIGHLQTNKVRQLLGNTVLIHSIDSIRLADTIDTEARKKGIHVDG 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++N E K G + + ++ + + + L+++GLM I P + N + + ++ +
Sbjct: 120 LLEINIAKEASKYGFIEEELEEILPIFARYKNLHIKGLMTIAPNVENSEENRKNFKKLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ D+ +A+ GA +R+G+GIFG+R
Sbjct: 180 LSVDIIDKNYDNVEVEFLSMGMSGDYIVALEEGANLLRVGTGIFGKR 226
>gi|227112383|ref|ZP_03826039.1| putative alanine racemase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 237
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ +Q+I +A+ R + ++L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIQQNLQDIRQQIAAAAVHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E + + + FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQKNHPDTPLAWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM + + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISSEPSKSGIMVAELAELAASVAALPNLRLRGLMAIPAPETDYEKQLAVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAVLLQTLSANYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYS 233
>gi|29655369|ref|NP_821061.1| hypothetical protein CBU_2091 [Coxiella burnetii RSA 493]
gi|153209616|ref|ZP_01947454.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154705905|ref|YP_001425492.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161831443|ref|YP_001597825.1| hypothetical protein COXBURSA331_A2216 [Coxiella burnetii RSA 331]
gi|212213535|ref|YP_002304471.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212219589|ref|YP_002306376.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
gi|29542641|gb|AAO91575.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
gi|120575301|gb|EAX31925.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154355191|gb|ABS76653.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161763310|gb|ABX78952.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
gi|212011945|gb|ACJ19326.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212013851|gb|ACJ21231.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 228
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ +I + R ++VSL+AVSK KI+ A++ GQ F EN LQE
Sbjct: 1 MSISENIKRITTEIRQAEKEFSRSPNAVSLLAVSKSQSLDKIKEAIAAGQRQFGENYLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K + ++ FIG +Q+NK I + FD +++VSR + AS L + L
Sbjct: 61 ALVKIKA-LRAHPLEWHFIGVIQTNKTRLISTNFDWVQSVSRLEVASELHHYRPLELPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVN E KSG+ +F Q +L + GLM IP + ++
Sbjct: 120 SICIQVNISEEKTKSGVDLTNLSEFAKAVSQFDRLRLRGLMTIPAYQKDFNAQKATFEKL 179
Query: 181 A--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LS+GMT DF AIA+G+T VRIG+GIFG R
Sbjct: 180 KEAQQQLIKKGLPLDVLSLGMTHDFRAAIAAGSTMVRIGTGIFGPR 225
>gi|329118482|ref|ZP_08247187.1| alanine racemase domain protein [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465423|gb|EGF11703.1| alanine racemase domain protein [Neisseria bacilliformis ATCC
BAA-1200]
Length = 238
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 106/227 (46%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q QK+ +A A RP +SV LVAVSK + IR + G F EN +QE
Sbjct: 3 TLQHNYQNLVQKLAAAAQKAGRPSESVRLVAVSKTFPADDIRAVYAAGARDFGENYIQEW 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ IG +QSNK + + T+ R KTA LS + + L
Sbjct: 63 LAKADDLADLPDIVWHIIGDVQSNKTKAVAERAHWVHTIGRLKTAQRLSAQRPSEMPPLQ 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V ++VN E K G+ P + + L V GLMC+ A + F +
Sbjct: 123 VCVEVNIAGEAAKHGVPPAEAVALACEVAKLPNLRVRGLMCVAEAGADGAALAEQFGTMQ 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+E A+A GAT VRIGS +FG R
Sbjct: 183 KLLADLNAVGVAADVLSMGMSGDWETAVACGATHVRIGSAVFGRRDY 229
>gi|221640312|ref|YP_002526574.1| Alanine racemase domain-containing protein [Rhodobacter sphaeroides
KD131]
gi|221161093|gb|ACM02073.1| Alanine racemase domain protein [Rhodobacter sphaeroides KD131]
Length = 221
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACRGM-DLPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LQGLSMGMSGDFEAAIAAGATHVRVGSAIFGARDYS 216
>gi|331091121|ref|ZP_08339963.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405343|gb|EGG84879.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
2_1_46FAA]
Length = 224
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 19/230 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + I S + V+L+AVSK ++ I+ G F ENK+QE
Sbjct: 2 LKDNLNHVIENIHKSCK------NEVTLIAVSKTKPAEMIQELYDAGCRNFGENKVQELI 55
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+ IG LQ NKV IV +I +V + A + E K++ + +
Sbjct: 56 DKYE--ILPKDICWHMIGHLQRNKVKYIVDKVSLIHSVDSLRLAQTIEKEAEKKNCVVDI 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I++N E K GI P + + + + V+GLM + P + NP+ + + +E+ +
Sbjct: 114 LIEINMAREESKYGIYPEELEALLREISHLSHIRVKGLMTVAPNVKNPEENRKIFTEMKK 173
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGM+ D+ +A+ GA VR+G+ IFG R
Sbjct: 174 LSVDIAKKNIDNIIMSILSMGMSNDYNIAVEEGANMVRVGTSIFGARNYN 223
>gi|126463262|ref|YP_001044376.1| alanine racemase domain-containing protein [Rhodobacter sphaeroides
ATCC 17029]
gi|126104926|gb|ABN77604.1| alanine racemase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 221
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 91/216 (42%), Positives = 122/216 (56%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGLAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACRGM-DLPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LRGLSMGMSGDFEAAIAAGATHVRVGSAIFGARDYS 216
>gi|331018485|gb|EGH98541.1| hypothetical protein PLA106_20818 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 228
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 106/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ AKR SV ++A SK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAKRDPASVGMLAGSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLELADL-PLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGESSKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTNDPAAQAASFAA 179
Query: 178 -SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|332297936|ref|YP_004439858.1| protein of unknown function UPF0001 [Treponema brennaborense DSM
12168]
gi|332181039|gb|AEE16727.1| protein of unknown function UPF0001 [Treponema brennaborense DSM
12168]
Length = 233
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L+ I + A R + SV LVAVSK ++ + A++ GQ +F EN++Q
Sbjct: 1 MSTISSNLKQITDSIFEAEQAAGRIRGSVRLVAVSKFHPAQAVLEAIASGQTLFGENRVQ 60
Query: 60 EAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K+ +R + +L IGSLQ NKV V I++V R++ + + K +
Sbjct: 61 EAAAKFETVRAAYPAAELHIIGSLQRNKVKSAVQCASCIQSVDRQELLEEIQKQAEKLGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V + +TG + + + + L G M + P + +
Sbjct: 121 KIRVLFEFHTGEDSKSGFTDADSVFRAIEFAESASCLVPAGFMTMAPFTQDSRLVSESFR 180
Query: 179 EI----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E +LT+LSMGM+ D+ +AIA GAT VRIG+ IFGER
Sbjct: 181 KLSGLRTAAQARFPELELTELSMGMSADYRIAIAEGATMVRIGTAIFGER 230
>gi|226952374|ref|ZP_03822838.1| alanine racemase domain-containing protein [Acinetobacter sp. ATCC
27244]
gi|226836826|gb|EEH69209.1| alanine racemase domain-containing protein [Acinetobacter sp. ATCC
27244]
Length = 230
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 8/229 (3%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+L + Q +IE + +R SV L+AVSK S+ +R GQ F EN LQ
Sbjct: 1 MNLLQQQRQHVLMQIEQACQHVQRDLKSVQLLAVSKTHPSQSLRELYLAGQRSFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ +++ FIG +Q NK + FD + V R A LS + + +
Sbjct: 61 EALGKIEELQDL-EIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLDGQQA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP------AMGNPKPH 173
L + +QVN + K G PN+ + V + L + GLM IP
Sbjct: 120 LNICLQVNIDGQDSKDGCEPNEVAELVEQISRLPNLRLRGLMVIPAPDNVAAFADAKTLF 179
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ S A++ LSMGM+ D + AIA+G+T VR+G+ +FG+R +
Sbjct: 180 DQVKSLHAQQQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGKRDYSS 228
>gi|315633758|ref|ZP_07889048.1| YggS family pyridoxal phosphate enzyme [Aggregatibacter segnis ATCC
33393]
gi|315477800|gb|EFU68542.1| YggS family pyridoxal phosphate enzyme [Aggregatibacter segnis ATCC
33393]
Length = 228
Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + +V L+AVSK + I A GQ+ F EN +QE
Sbjct: 2 IAQNLAHIQEQITQ-CECHSETQSAVKLLAVSKTKPIEDILTAYEAGQMAFGENYVQEGV 60
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K +++ +++ FIG LQSNK + FD ++T+ R K A L+ + L
Sbjct: 61 EKIQFCQQQQIELEWHFIGPLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRPPHKAPLN 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSG+ P+ L + GLM IP + ++
Sbjct: 121 VLIQVNISNEASKSGVQPDDILPLAKHVENLPHLRLRGLMAIPEPTDDVVQQEQTFRQMH 180
Query: 182 R----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D + AI G+T VR+G+ IFG+R
Sbjct: 181 TLFEGLQQALPHAQIDTLSMGMTDDMQSAIKCGSTMVRVGTAIFGKR 227
>gi|26991770|ref|NP_747195.1| alanine racemase domain protein [Pseudomonas putida KT2440]
gi|24986880|gb|AAN70659.1|AE016710_4 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 228
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 100/226 (44%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + L +I ++A R SV L+AVSK + IR + G F EN LQ
Sbjct: 1 MSTLADNLSAISARIASAAQAVGRDPASVQLLAVSKTKPASAIREIHAAGVHDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALTKQQALSDL-PLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPEPTEDRATQEAAFAS 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRKLQEGLGLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|163857208|ref|YP_001631506.1| hypothetical protein Bpet2896 [Bordetella petrii DSM 12804]
gi|163260936|emb|CAP43238.1| conserved hypothetical protein [Bordetella petrii]
Length = 260
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 101/224 (45%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++ I + A R V L+ VSK VD +IR+A + G ENK+QEA KW
Sbjct: 19 NLARVREHIAAACQRAGRDPAEVRLLPVSKTVDEARIRLAYAAGCRELGENKVQEAHAKW 78
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D++ IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 79 EAMADLPDLRWAVIGHLQTNKAKLVARFASEFQALDSLRVAEALDRRLQAEGRALDVFVQ 138
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-------- 177
VNT E K G+ P Q FV L V GLM + +P
Sbjct: 139 VNTSNEASKFGLPPEQAAAFVRELPAYSSLRVRGLMTLALFSPDPALVRPCFVRLRELRD 198
Query: 178 ---SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E + +LSMGM+ D+ LAI GAT+VR+G IFG R
Sbjct: 199 RLRQEAPAGIAIDELSMGMSGDYALAIEEGATTVRVGQAIFGAR 242
>gi|302871855|ref|YP_003840491.1| alanine racemase domain protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302574714|gb|ADL42505.1| alanine racemase domain protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 238
Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +IE + I + R +SL+ +K VD + I++A G IF EN++QE
Sbjct: 12 LKKNIEDVINRIEKACIRSGRNPSEISLLGATKGVDVETIKLANQFGLKIFGENRVQEFL 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + FIG LQ+NK+ I +I ++ + L K + V
Sbjct: 72 PKFQYLPYL---EWHFIGRLQTNKIKYIFDKVSLIHSIDSPQQIDELEKRCAKAGKACNV 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLSE 179
I++N G E K G+ + D + + ++G M IPP + K + + E
Sbjct: 129 LIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDDKKLRWYFRRMKE 188
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + K+ LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 189 IFEKYKKLNYNSVKIEVLSMGMSNDFEVAIEEGATLVRIGTKIFGERPKK 238
>gi|294009999|ref|YP_003543459.1| hypothetical protein SJA_C1-00130 [Sphingobium japonicum UT26S]
gi|292673329|dbj|BAI94847.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 248
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 131/218 (60%), Gaps = 2/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
N+L + + +A L R D ++L+AVSK + IR ++ GQ +F EN++QEA+
Sbjct: 14 ANRLAGIRAAMGRTASLTGRTADDITLIAVSKTQAADAIRPLIAAGQRVFGENRVQEAES 73
Query: 64 KWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR E D QL +G LQSNK ++ V+LFDVI ++ R + L+ M R +P
Sbjct: 74 KWPALRDEHDGLQLHLVGQLQSNKAADAVALFDVIHSLDRPSLLTALARAMDAADRRVPC 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN G E QK G P +I ++ + + GLMC+PPA P P F LL+++AR
Sbjct: 134 FVQVNIGAEPQKGGC-PIADVPALIRSAREAGIPLLGLMCVPPADIEPAPFFALLAKMAR 192
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E L LSMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 193 EEGLEGLSMGMSGDYETAIMLGATHIRVGTALFGERPA 230
>gi|300697292|ref|YP_003747953.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum CFBP2957]
gi|299074016|emb|CBJ53553.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum CFBP2957]
Length = 226
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 135/217 (62%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + I+++AI + R ++V+LVA SK V+ I+ A+ G +F EN++QEA
Sbjct: 5 LEDNIGRITKAIQHAAIGSGRHANAVTLVAASKTVEPHHIQQAIDLGLTVFGENRVQEAV 64
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + ++L IG LQSNKV + V LFD IE+V R K A ++ E KQ R
Sbjct: 65 TKWPELRSRNAGIELHLIGPLQSNKVRQAVGLFDAIESVDRAKLARAIAEEAEKQGRNPA 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+YIQVN G E QKSG++P + + CR+ YQLNV+GLMCIPPA +P HF L IA
Sbjct: 125 IYIQVNVGKEPQKSGVLPAEAPALIRECREVYQLNVQGLMCIPPAGLDPCAHFACLRSIA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ AIA GAT VR+GS IFG R
Sbjct: 185 EDHGLRALSMGMSADYLQAIAQGATHVRVGSSIFGAR 221
>gi|28211286|ref|NP_782230.1| proline synthetase associated protein [Clostridium tetani E88]
gi|28203726|gb|AAO36167.1| proline synthetase associated protein [Clostridium tetani E88]
Length = 225
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 21/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K++I ++V+L+AVSK + I A + G F ENK+QE
Sbjct: 4 MSISENLHAIKKEI----------GNNVNLIAVSKTKPIEDIDKAYNLGIRDFGENKVQE 53
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K +KE D++ IG LQ NKV IV +I ++ + + + + +
Sbjct: 54 LVEKIDKFQKE-DIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLKEIERKYKDEDKVA 112
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V IQ+N G + K GI + +D + C + + +EGLM I P K +F +
Sbjct: 113 KVLIQINIGEDENKYGIKVEELEDMIKACEECSNVKIEGLMTILPMEDSEICKRYFKQMK 172
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+I + K + LSMGM+ D+++AI G+ +R+G GIFG+R
Sbjct: 173 KIFDDLKNRSFKNIEMKYLSMGMSGDYKIAIEEGSNMIRVGQGIFGKRDYN 223
>gi|254784476|ref|YP_003071904.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
T7901]
gi|237687467|gb|ACR14731.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
T7901]
Length = 228
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +I+N+A A R +++L+AVSK + I+ A G F EN LQEA
Sbjct: 4 IQDRITQVNIRIKNAASNAGRNPQAITLLAVSKRQPNALIQAAYDAGLRDFGENYLQEAV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + + FIG +QSNK I F + +V R K A LS + L +
Sbjct: 64 EKI-AVLAMPEARWHFIGPIQSNKTRAIAEHFQWVHSVDRLKIAQRLSEQRSPALPPLQI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-LLSEIA 181
+QVN E KSG+ + + + + L + GLM IP + L +
Sbjct: 123 CLQVNIDNEDTKSGVNVTELETLALAVAELPHLQLRGLMTIPATQYTADNSPFVRLQTLF 182
Query: 182 RECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ D E AIA+G+T VRIG+ +FGER
Sbjct: 183 ERLKKHPQLANMDTLSMGMSGDMEDAIAAGSTQVRIGTALFGER 226
>gi|17548904|ref|NP_522244.1| hypothetical protein RS01766 [Ralstonia solanacearum GMI1000]
gi|17431154|emb|CAD17834.1| putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum GMI1000]
Length = 226
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 98/218 (44%), Positives = 136/218 (62%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + ++ I+++AI R D+V+LVA SK V+S +I+ A+ G +F EN++QEA
Sbjct: 4 NLEDNIGRIRKAIQHAAIDNGRRADAVTLVAASKTVESHRIQKAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + ++L IG LQSNKV + V LFDVIE+V R + A ++ E +Q
Sbjct: 64 VSKWPELRSRNPGIELHLIGPLQSNKVRQAVDLFDVIESVDRSRLARAIAEEAERQGHAP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVN G E QK G++P + + CR YQLNV+GLMCIPPA +P HF L I
Sbjct: 124 AIYIQVNVGKEPQKGGVLPAEASALIGECRDVYQLNVQGLMCIPPAGLDPSGHFAGLRSI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + L LSMGM+ D+ AIA GAT VR+GS +FG R
Sbjct: 184 AADHGLHVLSMGMSADYPQAIAQGATHVRVGSALFGAR 221
>gi|160902802|ref|YP_001568383.1| alanine racemase domain-containing protein [Petrotoga mobilis SJ95]
gi|160360446|gb|ABX32060.1| alanine racemase domain protein [Petrotoga mobilis SJ95]
Length = 231
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 11/228 (4%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L +I+ A + R +S+ LVAVSK S I+ G F ENK
Sbjct: 1 MNNFLIENYHTLLNEIQKVAEKSGRDLNSIKLVAVSKNFPSDNIKTLYEEGHKDFGENKA 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE ++K+ L+ D+ FIG +Q+NK+ IV + + I +V R K + + + ++
Sbjct: 61 QELREKYEDLKNL-DIVWHFIGRIQTNKIKYIVPIAEYIHSVWRMKEIEEIQKKAEEINK 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V +++N E K+G++P++ + F+ + + GLM + P N + F
Sbjct: 120 TQKVLLEINISGEQSKAGLIPSEVEAFLQDATSFKNIKIIGLMTMAPYTDNVEVIRNVFR 179
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ + +LSMGMT D+++AI GAT +RIG+ IFG R
Sbjct: 180 SLRELRGNLNKKYPSIKELSMGMTNDYKIAIEEGATLLRIGTRIFGNR 227
>gi|189423531|ref|YP_001950708.1| alanine racemase domain protein [Geobacter lovleyi SZ]
gi|189419790|gb|ACD94188.1| alanine racemase domain protein [Geobacter lovleyi SZ]
Length = 228
Score = 167 bits (423), Expect = 9e-40, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I+ + ++ R +V LVAVSK+ + + A + GQ +F EN +QE
Sbjct: 1 MSVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK-TASLLSLEMIKQSRF 119
K V+ IG LQSNKV + + +I TV R + KQS
Sbjct: 61 LVDKAAQ--LARPVEWHMIGHLQSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAA 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +QVN E KSG + + V + + V GLM +PP +P +P+F
Sbjct: 119 CDILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLMTMPPFFDDPEAARPYFRE 178
Query: 177 LSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A ++T+LSMGM+ DFE+AI GAT VR+G+ IFG R
Sbjct: 179 LRLLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR 228
>gi|149909466|ref|ZP_01898121.1| Predicted enzyme with a TIM-barrel fold [Moritella sp. PE36]
gi|149807576|gb|EDM67525.1| Predicted enzyme with a TIM-barrel fold [Moritella sp. PE36]
Length = 231
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 11/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ +LQ +IEN+ + + + ++L+AVSK +++ + GQ F EN LQE
Sbjct: 3 SISTRLQQVLTQIENATSASCKKRSEINLLAVSKTKPVEQVMAVYALGQRKFGENYLQEA 62
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
D++ FIG +QSNK I FD ++++ R K A L+ +
Sbjct: 63 VEKITHLQQDGNYDDIEWHFIGPIQSNKTRPIAEHFDWVQSIDRLKVAQRLNDQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSG Q L + G+M IP + S
Sbjct: 123 KLNVCIQINISAEDSKSGADVQQAHLLAEQVANLPNLVLRGIMAIPEKTADIDKLKSQFS 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + ++ LSMGMT D ELAIA G+ VR+G+ IFG R
Sbjct: 183 QLESLYLSLQHQYNQIDTLSMGMTNDMELAIAQGSNMVRVGTAIFGARD 231
>gi|312129486|ref|YP_003996826.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311906032|gb|ADQ16473.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 238
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + LQ+ + +I+ + A R ++ V L+ +K V + +I A+ G + AENK+QE
Sbjct: 3 DILHNLQIIQNRIDLACAKANRSREEVRLLLATKTVTADRILTAMQAGYTLIAENKVQEV 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ K++ FIG LQ+NK+ +++ I+++ R A L + K+++ +
Sbjct: 63 KEKFDA-LKDFSHISHFIGHLQTNKIKDLLKCNVSCIQSLDRLDLAEKLQSRLEKENKDI 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
V+IQVNT E K GI P+Q +D V + ++N++GLM + + + LL
Sbjct: 122 DVFIQVNTSEEESKFGIHPDQAEDLVRRVAELDRINIKGLMTIGLFSADLDKVRLCYQLL 181
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + +E + L +LSMGM+ D E+AI GAT VR+G+ IFG+R
Sbjct: 182 NRLRKEIQVPGVELKELSMGMSGDLEIAIEEGATIVRVGTAIFGQRIYP 230
>gi|219670058|ref|YP_002460493.1| alanine racemase domain protein [Desulfitobacterium hafniense
DCB-2]
gi|219540318|gb|ACL22057.1| alanine racemase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 233
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I+ +A+ + R ++ L+AVSK + + ++ A GQ FAEN++QE
Sbjct: 1 MDIYGSLSAVRQRIQQAAVKSGRDPSAIKLLAVSKTMSAGTVQRAYEAGQRSFAENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D + IG LQ+NKV + ++I ++ R L + +++
Sbjct: 61 WQDKVTQ--LPADCEWHLIGRLQTNKVKYLDERINLIHSLDRLSLLETLESQGAQRNIIW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P +QVN + QK+G++ + +DF+ + V GLM I +P+ E+
Sbjct: 119 PTLVQVNIARDSQKAGLLAEEVEDFLREAAGCQHIQVYGLMTIGALGASPEDTQGFFREL 178
Query: 181 A--------REC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM++DF AI G+T +R+G IFGER
Sbjct: 179 RLLKERLQQKNLPHVNLKELSMGMSQDFGWAIQEGSTIIRVGRQIFGER 227
>gi|83592477|ref|YP_426229.1| hypothetical protein Rru_A1141 [Rhodospirillum rubrum ATCC 11170]
gi|83575391|gb|ABC21942.1| Protein of unknown function UPF0001 [Rhodospirillum rubrum ATCC
11170]
Length = 271
Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I ++ R + V L+ V+K V + +R+A + G FAENKLQEA+
Sbjct: 26 AANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVPAPLLRLAFAAGLSDFAENKLQEARD 85
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + L ++ IG LQ+NKV +V + + A ++ + Q R L V+
Sbjct: 86 KQVELADLA-IRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLAEEMNRRLDAQGRDLDVF 144
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
+QVNT E K G+ P + FV +L GLM + + F LL +
Sbjct: 145 VQVNTSGEASKYGLPPAEVIPFVERLADYPRLKPRGLMTLAIFSADTDRVRTCFRLLRAL 204
Query: 181 ARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +T+LSMGM+ D+E AI GA VR+G IFG RP
Sbjct: 205 RDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVGQAIFGPRPT 249
>gi|238026281|ref|YP_002910512.1| Alanine racemase domain-containing protein [Burkholderia glumae
BGR1]
gi|237875475|gb|ACR27808.1| Alanine racemase domain protein [Burkholderia glumae BGR1]
Length = 236
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 9/231 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +L ++I+++A A R V+L+AVSK ++ +R A + GQ F EN +QE
Sbjct: 2 LDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQE 61
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ K L ++ FIG LQSNK + FD + +V R K A L+ + Q
Sbjct: 62 SLDKIAALADLRASLEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V +QVN E KSG+ P++ L + GLM IP G+ +
Sbjct: 122 LNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLRGLMAIPEPAGDLAAQRAPHRR 181
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ + L LSMGM+ D E A+ GAT VRIG+ IFG R T
Sbjct: 182 LRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYST 232
>gi|222109633|ref|YP_002551897.1| alanine racemase domain-containing protein [Acidovorax ebreus TPSY]
gi|221729077|gb|ACM31897.1| alanine racemase domain protein [Acidovorax ebreus TPSY]
Length = 238
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +++I + A RP D+V+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 TIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEA 62
Query: 62 KKKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKMALVAALGLPQALEWHCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQVN K+G+ + +L + G+M IP + +L
Sbjct: 123 ALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPAPDEAAQLAVLL 182
Query: 178 --SEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + LS+GMT D E A+ +G+T VR+GSGIFG R
Sbjct: 183 RVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYP 237
>gi|218246529|ref|YP_002371900.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
8801]
gi|218167007|gb|ACK65744.1| alanine racemase domain protein [Cyanothece sp. PCC 8801]
Length = 224
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +L +Q I V L+AV+K V I+ A G FAE++LQE
Sbjct: 1 MTLVQRLDQIRQNI----------PPHVRLIAVTKQVSIDAIKEAYQAGVRDFAESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +I+ F I +V K A L+ ++S
Sbjct: 51 ALPKQAQLQDLRDISWHFIGHLQANKAKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G ++ + Q QL ++GLM I P + K +
Sbjct: 111 NICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQT 170
Query: 180 ------IARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I + L +LSMGM+ D+ LAI +GAT +R+G+ IFGER
Sbjct: 171 KVLETQINNQSTLSLNELSMGMSGDYLLAIQAGATMIRLGTIIFGERN 218
>gi|303258028|ref|ZP_07344037.1| pyridoxal phosphate enzyme, YggS family [Burkholderiales bacterium
1_1_47]
gi|330999444|ref|ZP_08323158.1| pyridoxal phosphate enzyme, YggS family [Parasutterella
excrementihominis YIT 11859]
gi|302859371|gb|EFL82453.1| pyridoxal phosphate enzyme, YggS family [Burkholderiales bacterium
1_1_47]
gi|329574870|gb|EGG56429.1| pyridoxal phosphate enzyme, YggS family [Parasutterella
excrementihominis YIT 11859]
Length = 241
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 101/237 (42%), Gaps = 17/237 (7%)
Query: 1 MSL-----GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
MS+ + + KQ + + + R SV L+ VSK + A+ CG F E
Sbjct: 1 MSILKPGLEERYKRVKQSLADDEMRFGREPGSVFLLPVSKTFGINALEEAVKCGMRAFGE 60
Query: 56 NKLQEAKKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
N +QE +K +K+ ++ FIG LQSNK + FD ++TV R K A LS +
Sbjct: 61 NYVQEGCEKIEYFKKQHPDLEITWHFIGHLQSNKTRPVAEHFDWVQTVDRLKIAQRLSEQ 120
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
L V I+V+ E KSG P L + G+M IP +
Sbjct: 121 RPADMPPLNVLIEVHISDEESKSGCQPADVPALAQAITLLPNLKLRGIMAIPAPSDTEEG 180
Query: 173 HFYLLSE-------IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E + E LSMGM+ D A+ G+T VR+GS IFG R
Sbjct: 181 KKAPLKEMYAIFLHLRDELNFDIDTLSMGMSSDMAEAVECGSTMVRVGSAIFGPRDY 237
>gi|167564005|ref|ZP_02356921.1| hypothetical protein BoklE_15722 [Burkholderia oklahomensis EO147]
Length = 232
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 84/231 (36%), Positives = 112/231 (48%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L +IE++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHHRIEDAARAAGREPRAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K L +++ FIG LQSNK I FD + TV R K A LS +
Sbjct: 61 EAIDKIESLADLRAELEWHFIGPLQSNKTRAIAERFDWVHTVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +P +
Sbjct: 121 PLDVCVQVNISGEASKSGVAPAEAAELARAVAALPALRLRGLMAIPEPAHDPDAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFERLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYS 231
>gi|117926931|ref|YP_867548.1| alanine racemase domain-containing protein [Magnetococcus sp. MC-1]
gi|117610687|gb|ABK46142.1| alanine racemase domain protein [Magnetococcus sp. MC-1]
Length = 235
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ ++ + + A R V L+AVSK S + A+ GQ++F EN++QEA
Sbjct: 3 TITQRLETIQEHMVQACQRAGRSPHEVQLMAVSKRQSSSAVSEAIEAGQLLFGENRVQEA 62
Query: 62 KKKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K + Q IG LQ NK+ I LF +++TV A + M + R
Sbjct: 63 KEKQPTVSMPAGVQPQWHMIGPLQKNKIKYIGELFHMVQTVDTLTLAQAIGARMQAEQRQ 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+P+ +QVN G E QK+G+ ++ V Q + ++GLM +PP + +P+
Sbjct: 123 MPILLQVNVGGEAQKNGMTAEALEEQVRHIAQIPGVRIQGLMTVPPYLEDPQQVRPYFRA 182
Query: 180 IARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DF +AI GAT VR+GS +FGER
Sbjct: 183 LYTLANHVQQMRLPGVAMETLSMGMSHDFHVAIEEGATMVRVGSALFGER 232
>gi|254482735|ref|ZP_05095973.1| conserved hypothetical protein TIGR00044 [marine gamma
proteobacterium HTCC2148]
gi|214037094|gb|EEB77763.1| conserved hypothetical protein TIGR00044 [marine gamma
proteobacterium HTCC2148]
Length = 230
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 9/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ + +++ + +++P+ + L+AVSK + +R A CG F EN LQEA
Sbjct: 7 KDNIAKLLKRVRIRSQKSQKPESDIILLAVSKTRPADDVRAAYDCGLTQFGENYLQEAVD 66
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + FIG +QSNK I F ++++ R K A L+ + L V
Sbjct: 67 KITDLADL-PITWHFIGPIQSNKTRPIAEHFQWVQSIERPKIARRLNEQRPDSLPPLQVC 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR- 182
+QVN E KSG+ N+ + L + +L + GLM IP A + + + +
Sbjct: 126 LQVNISSEQSKSGVSLNELDELATLVDELPRLQLRGLMAIPAATDSESEQRATFAALRKA 185
Query: 183 -------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 186 FEQLKLKHPQIDTLSMGMSGDMESAIAEGSTMVRIGTAIFGPR 228
>gi|312135160|ref|YP_004002498.1| alanine racemase domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775211|gb|ADQ04698.1| alanine racemase domain protein [Caldicellulosiruptor owensensis
OL]
Length = 238
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +IE + + + R VSL+ +K V+ I++A G IF EN++QE
Sbjct: 12 LKKNIEDIMNRIEKACLRSGRNPSEVSLLGATKGVNVDTIKLANQLGLKIFGENRVQEFL 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + FIG LQ+NK+ I +I ++ + L K + V
Sbjct: 72 PKFQVLPYL---EWHFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCAKAGKACNV 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLSE 179
I++N G E K G+ + D + + ++G M IPP + K + ++ E
Sbjct: 129 LIEINIGGEESKGGVSVEKVDDLIEKISNCSHIILKGFMTIPPIEDDDKKLRWYFRMMKE 188
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + K+ LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 189 IFEKYKKLNYNNVKIEVLSMGMSNDFEVAIEEGATLVRIGTKIFGERPKK 238
>gi|224826749|ref|ZP_03699849.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
gi|224600969|gb|EEG07152.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
Length = 231
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + L +Q++ + A R SV L+AVSK + I+ A + GQ F EN +
Sbjct: 1 MTSAISSSLAAVRQRLAAAEAAAGRASGSVCLLAVSKTFPADAIQEAYAAGQRAFGENYV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE + K + D++ FIG LQSNK + L + +V R K A LS +
Sbjct: 61 QELQAKGG-VLGGLDIEWHFIGPLQSNKTRPVAELAHWVHSVERLKIAERLSSQRPASLP 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
L V +QVN E KSG P++ +L + GLMCIP + F
Sbjct: 120 PLNVCLQVNVSGEGSKSGCEPHEVLALARAVAALPRLTLRGLMCIPEPTADQARLAGQFA 179
Query: 176 LLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LL + E L LSMGM+ D ELA+ G+T VR+G+ IFG R
Sbjct: 180 LLRRLRDEMAAQGLALDTLSMGMSADLELAVREGSTLVRVGTAIFGSRTYP 230
>gi|121592853|ref|YP_984749.1| alanine racemase domain-containing protein [Acidovorax sp. JS42]
gi|120604933|gb|ABM40673.1| alanine racemase domain protein [Acidovorax sp. JS42]
Length = 238
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 15/235 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +++I + A RP D+V+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 TIASNLQNVRERIARACTAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEA 62
Query: 62 KKKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKMALVAALGLPQPLEWHCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQVN K+G+ + +L + G+M IP + + +L
Sbjct: 123 ALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPVPDEAAQLAVLL 182
Query: 178 --SEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + LS+GMT D E A+ +G+T VR+GSGIFG R
Sbjct: 183 RVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGARHYP 237
>gi|253576142|ref|ZP_04853474.1| YggS family pyridoxal phosphate enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844485|gb|EES72501.1| YggS family pyridoxal phosphate enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 234
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++Q +++I+ + + R ++ V +VAV+K V + R L G V EN+ Q A
Sbjct: 6 SLKERIQHVEEQIKAACERSGRKREEVHVVAVTKYVSVEATREVLEAGIVHIGENRPQIA 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW L + FIG LQSNKV +++ F I ++ R A L +
Sbjct: 66 VPKWEALGGQ--GTWHFIGHLQSNKVKDVIGRFQYIHSLDRLSLARELEKRASAMGTSVT 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
++QVN E K GI P DF+ + V GLM + P +P F L
Sbjct: 124 AFLQVNVSGEASKQGIAPEAAADFLKEIADLKHVRVVGLMTMAPIEEDAERTRPVFRKLR 183
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + LT+LSMGM+ DFE+AI GAT VR+G+ + G+
Sbjct: 184 ELRDQLNAQSVTAEPLTELSMGMSGDFEVAIEEGATWVRLGTLLVGK 230
>gi|240851274|ref|YP_002972677.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
gi|240268397|gb|ACS51985.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
Length = 229
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 97/216 (44%), Positives = 142/216 (65%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
Q ++ I + +RP + + L+AVSK V + +R L GQ +FAEN++QEA +K
Sbjct: 13 EAWQNLQKDIAETCQELQRPVEEIELIAVSKTVSAADVRPLLQAGQSLFAENRVQEAAQK 72
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W+ ++ +++L IG LQSNK +E + +FDVI+TV REK A +L+ EM KQ R LP Y
Sbjct: 73 WLGLRQQFENIKLHLIGPLQSNKAAEAIKIFDVIQTVDREKIAKILAEEMQKQKRHLPCY 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSG+ P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 133 VQVNIGLEPQKSGVAPQEVIPFVNQCKNNYGLDIIGLMGIPPVDENPGPYFALLAKLAKQ 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L K+SMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 193 ADLPKISMGMSSDFKTALQFGSNVLRIGSALFGKRP 228
>gi|295097490|emb|CBK86580.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 233
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/232 (32%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + I A++ G F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCGRAPEEITLLAVSKTKPASAIAEAIAAGHRAFGENYVQ 60
Query: 60 EAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K R+ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 61 EGVDKIRAFRERGNTDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLSDQRPAEM 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + +L + GLM IP + + F +
Sbjct: 121 PALNVLIQINISDENSKSGITLGELDALAADVAALPRLTLRGLMAIPAPESSYERQFAVA 180
Query: 178 SEIA---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A K LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 QQMAVAFEALKARYDTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYP 232
>gi|326382735|ref|ZP_08204425.1| alanine racemase domain protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326198325|gb|EGD55509.1| alanine racemase domain protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 256
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 107/232 (46%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +I+ +A A R V L+ VSK V ++I A++ G ENK+QEA
Sbjct: 20 DFRANLAAVRARIDAAATRAGRDPGEVQLLPVSKTVPEERIVNAVAAGCRTLGENKVQEA 79
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+K L DV IG LQ+NK ++ + + + + A L + R +
Sbjct: 80 KRKHDALAHL-DVDWSVIGHLQTNKAKDVAAFASEFQALDSLRIAEALDRRLQAAGRGID 138
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
VY+QVNT E K G+ P + D + L V GLM + + +P F LL
Sbjct: 139 VYVQVNTSSEDSKYGLTPAELPDLLRQLPAYSSLRVRGLMTLAVFSDDAERVRPCFQLLR 198
Query: 179 EIARECKLTK---------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGM+ D+ELAI G+T VR+G IFG R
Sbjct: 199 SLRDRIR-DEDPDLIGDGGLSMGMSGDYELAIEEGSTCVRVGQAIFGARATP 249
>gi|299144088|ref|ZP_07037168.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518573|gb|EFI42312.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 228
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 15/232 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + +IENS + V L+AVSKM +++ A + G F ENK+QE
Sbjct: 1 MSIKDNYEFILTEIENS-RKVSITGEEVKLIAVSKMRTIDEMKEAYNLGIRDFGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+ IG+LQ+NKV I +I+++ R+ ++ ++ +
Sbjct: 60 LK---EKFLNFDDINFHMIGNLQTNKVKYIYDKVTLIQSLDRKSLLEEINKRADIKNIDV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++N E QK G+ + +F+ C + ++G+M + P + ++
Sbjct: 117 DCLVEINIAEESQKGGVPYTEALNFIETCIDYKNIKIKGIMTVAPDTSDKLFLRECFKKM 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E ++ LSMGM+ D+++AI G+ VRIG+ IFG+R +
Sbjct: 177 FILKEKIIKLNYDEVEMKYLSMGMSGDYKIAIEEGSNMVRIGTSIFGKRNYK 228
>gi|78486175|ref|YP_392100.1| hypothetical protein Tcr_1834 [Thiomicrospira crunogena XCL-2]
gi|78364461|gb|ABB42426.1| Conserved hypothetical protein; UPF0001 member [Thiomicrospira
crunogena XCL-2]
Length = 227
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q +++I+++ A R D + L+AVSK + I GQ F EN +QEA
Sbjct: 4 TLIQRYQNVQKRIDDAMQSANRT-DHIQLLAVSKTKPIEDIIALADIGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K D++ FIG +QSNK I + +V R K A LS + L
Sbjct: 63 LDKIAQRP---DLEWHFIGPIQSNKTKPIAENVQWVHSVDRFKIARRLSEQRPDNLPPLN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLS 178
+ ++VN E K+G PN+ D + L + GLM IP K F+ +
Sbjct: 120 ILLEVNISNEASKAGFSPNEILDVTKQILELPHLALRGLMAIPAKAYSHDEQKQPFHQMK 179
Query: 179 EIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D E AI GAT VRIG+ IFG R
Sbjct: 180 LLLESMQTHFPDQPIDTLSMGMSADLEAAIEEGATIVRIGTDIFGAR 226
>gi|119513658|ref|ZP_01632662.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
gi|119461687|gb|EAW42720.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
Length = 222
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + SV L+AVSK ++ IR A + G F EN++QEA
Sbjct: 4 SISERITTIRASL----------PPSVRLIAVSKTFPAEDIRAAYNAGIRDFGENRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ FIG LQSNK + + LFD I +V K A L+ +
Sbjct: 54 ASKQAELQDLPDITWHFIGGLQSNKAKKALELFDWIHSVDNLKLAQRLNQLAQQLGVTPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
V +QV + KSG + + Q L ++GLM IPP N + +
Sbjct: 114 VCLQVKILPDPNKSGWTVPELLADLDALNQCKNLQIQGLMTIPPLGLNDTEIISVFNATH 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A+E K+ +LSMGM+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 174 KLAQEIEEQNWSHLKMPELSMGMSGDYQLAVQAGATMVRLGTILFGKR 221
>gi|254437301|ref|ZP_05050795.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 307]
gi|198252747|gb|EDY77061.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 307]
Length = 217
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 93/219 (42%), Positives = 122/219 (55%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS LQ ++IE + A R S L+AVSK+ +K ++ L G F EN++QE
Sbjct: 1 MS----LQEIIKRIEAAEAKAGRSVGSTKLIAVSKVQPNKLVQTILEQGHRTFGENRVQE 56
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++D + L IG LQ+NK + L I+T+ R K A + +
Sbjct: 57 AAVKWPAFREQFDGIDLHIIGPLQTNKARAAMELAQAIQTLDRIKLARTFARLAQEMGAC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+YIQVNTG E QK+G++P+ F+ L V GLMCIPPA P HF LL E
Sbjct: 117 PDIYIQVNTGAEPQKAGVLPDDADAFIKEAVA-LDLPVAGLMCIPPADEEPSLHFALLGE 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 176 IAARNGLNGLSMGMSGDFETAVAHGATLVRVGSAIFGSR 214
>gi|220927870|ref|YP_002504779.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
gi|219998198|gb|ACL74799.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
Length = 225
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ N+ ++ Q IE SA KR +++L+AVSK + KI L G F E+++QEA
Sbjct: 5 SILNQYKLIVQNIEKSAEKVKRDAKNINLLAVSKFHEVNKIIPLLEIGHCHFGESRVQEA 64
Query: 62 KKKWIPLRKEWDVQL-RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KWI L+K + + IG LQ+NKV + + LFD+IET+ REK A ++ E+ K +
Sbjct: 65 KSKWIDLKKLYPQTILHLIGPLQTNKVKDAIQLFDIIETLDREKLAEKIADELRKTGKNP 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++IQVN G E+QKSGI P + K F+ CR Y L+++GLMCIPPA + +F L +
Sbjct: 125 KIFIQVNIGMEVQKSGIAPEELKMFLNKCRNDYALDIKGLMCIPPAGEDSVKYFLDLYNL 184
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A++ L ++SMGM+ D++ AI SGAT VRIGS +FG+R
Sbjct: 185 AQKNGLEEISMGMSDDYQEAILSGATQVRIGSSLFGKRNY 224
>gi|330977068|gb|EGH77028.1| hypothetical protein PSYAP_10145 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 236
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/220 (34%), Positives = 105/220 (47%), Gaps = 7/220 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + + + FIG +QSNK I FD + +V R K A LS + +
Sbjct: 61 EALGKQLE-LSDLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
L + IQVN E KSG P +L + GLM IP +P
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLSALAAAIIALPRLRLRGLMAIPVPTDDPAAQDASFAA 179
Query: 178 -SEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + L LSMGM+ D E AIA GAT VRIG+ +
Sbjct: 180 VRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTAL 219
>gi|326315426|ref|YP_004233098.1| hypothetical protein Acav_0608 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372262|gb|ADX44531.1| protein of unknown function UPF0001 [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 240
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/237 (32%), Positives = 105/237 (44%), Gaps = 17/237 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++GN LQ +I + A R SV L+AVSK + +R A GQ F EN +QE
Sbjct: 3 TIGNNLQGVLDRIAQACAGAGRAPSSVRLLAVSKTFGAPAVREAALAGQRAFGENYIQEG 62
Query: 62 KKKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKIVALGAPESGLAHALEWHCIGPVQSNKTRLVAEHFDWVHTVDRPKTAERLSQQRPDH 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQVN K+G+ P++ + + +L + GLM IP P
Sbjct: 123 LPALQVCIQVNVDGGATKAGLPPDEVPGLALAVARLPRLRLRGLMAIPEPAPDFAAQFSV 182
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LS+GMT D E AI +G+T VR+GSGIFG R
Sbjct: 183 HAQARALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYP 239
>gi|317508842|ref|ZP_07966483.1| alanine racemase domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
gi|316252866|gb|EFV12295.1| alanine racemase domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
Length = 234
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 11/233 (4%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS L +L ++++ + A R V+LV V+K + + G F E+
Sbjct: 1 MSRRAELAERLASVREQVAEACARAGRDAREVTLVVVTKFFPASDAALLYELGCREFGES 60
Query: 57 KLQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ QEA+ K V+ IG +Q NK I S V+++V + + + +
Sbjct: 61 RDQEARAKVAELGDSVPGVRWHMIGQIQRNKAKSIASWAHVVQSVDEARLVAAFEKAVSE 120
Query: 116 QSRFL-PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ V +QV+ + ++SG +P L ++GLM IPP +P +
Sbjct: 121 RGGQPLDVLVQVSLDGDGRRSGALPEDVPALADQIAASEHLRLQGLMAIPPLAADPAQAY 180
Query: 175 YLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+ + K LS GM+ DF AIA+G++ VR+G+ I G RP +
Sbjct: 181 ERLARLHDALKADHPSATTLSAGMSGDFATAIAAGSSCVRVGTAILGARPIPS 233
>gi|196230130|ref|ZP_03128993.1| alanine racemase domain protein [Chthoniobacter flavus Ellin428]
gi|196225727|gb|EDY20234.1| alanine racemase domain protein [Chthoniobacter flavus Ellin428]
Length = 243
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + I +A A R V LVAV+K + AL+ GQ +F E+++Q
Sbjct: 1 MNTIADNLAAVRAVISEAAARAGRNPADVELVAVTKTHPPDSVVEALAAGQYVFGESRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSR 118
EAK K + FIG LQ NK+ + ++ F+++ V +TA + +
Sbjct: 61 EAKAKIP--LVSGRARWHFIGHLQRNKIRQALALGFELLHGVDSLETAREVDRLTSETGV 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
F V ++VN E K G P + ++ + +L +EGLM I P + + +F
Sbjct: 119 FPRVLLEVNVAGESSKFGFSPAKLREQLEELLSLGRLQIEGLMTIAPFAPEAESSRKYFV 178
Query: 176 LLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ + + L +LSMGM+ D+ +A+ GAT VR+G+ IFG R
Sbjct: 179 ALRELRDQLQTEFRLPLPRLSMGMSGDYAVAVEEGATLVRVGTAIFGTR 227
>gi|283835288|ref|ZP_06355029.1| pyridoxal phosphate enzyme, YggS family [Citrobacter youngae ATCC
29220]
gi|291068446|gb|EFE06555.1| pyridoxal phosphate enzyme, YggS family [Citrobacter youngae ATCC
29220]
Length = 234
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K R++ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 61 EGVDKIRYFREQGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAEL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + ++ + GLM IP + F +
Sbjct: 121 PPLNVLIQINISDENSKSGIPLTELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 181 QQMAVAFTGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 231
>gi|160947744|ref|ZP_02094911.1| hypothetical protein PEPMIC_01679 [Parvimonas micra ATCC 33270]
gi|158446878|gb|EDP23873.1| hypothetical protein PEPMIC_01679 [Parvimonas micra ATCC 33270]
Length = 232
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +KI + + R K + L+ VSK VD KI+ A+ G F ENK+QE
Sbjct: 1 MKENINNILEKISLACKNSNRDKKEIFLLPVSKTVDVDKIQEAIDLGFDTFGENKVQEIL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ + V+ IG LQ+NKV I+ ++I ++ R L LE + +
Sbjct: 61 KKYE--YFDGKVKFHMIGHLQTNKVKSIIDKVELIHSLDRISLLDKLELEAKNKGITVNC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN G E KSGI DF+ ++ + V GLM + P + + ++
Sbjct: 119 LVEVNIGKEDSKSGIFEEDVLDFIREVSKRDNVLVNGLMTVAPYCEDAEDTRIYFKKMKS 178
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ DF +AI G+ +RIG+ IFG R
Sbjct: 179 LFDEISKLKLKNVDMKILSMGMSNDFMVAIEEGSNLIRIGTSIFGARNY 227
>gi|257059562|ref|YP_003137450.1| alanine racemase [Cyanothece sp. PCC 8802]
gi|256589728|gb|ACV00615.1| alanine racemase domain protein [Cyanothece sp. PCC 8802]
Length = 224
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +L +Q I V L+AV+K V I+ A G FAE++LQE
Sbjct: 1 MTLVQRLDQIRQNI----------PPHVRLIAVTKQVSIDAIKEAYQAGVRDFAESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +I+ F I +V K A L+ ++S
Sbjct: 51 ALPKQAQLQDLRDISWHFIGHLQANKAKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G ++ + Q QL ++GLM I P + K +
Sbjct: 111 NICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQT 170
Query: 180 ------IARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I + L +LSMGM+ D+ LAI +GAT +R+G+ IFGER
Sbjct: 171 KALETQINNQSTLSLNELSMGMSGDYLLAIRAGATMIRLGTIIFGERN 218
>gi|124268943|ref|YP_001022947.1| hypothetical protein Mpe_A3759 [Methylibium petroleiphilum PM1]
gi|124261718|gb|ABM96712.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 238
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +K+Q +I + A RP SV+L+AVSK + +R AL+ GQ F EN +QEA
Sbjct: 3 TIASKIQEVSGRIARACDAAGRPVASVTLLAVSKTFGADTVREALAAGQTRFGENYVQEA 62
Query: 62 KKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + IG LQSNK + FD + +V R K A LS + L
Sbjct: 63 LDKMAALADVRARLEWHLIGPLQSNKTRAVAEAFDWVHSVDRLKIAQRLSEQRPDALPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V +QVN E KSG+ P++ ++ +L + GLM IP G+ + L
Sbjct: 123 QVCLQVNVSGEASKSGLAPDEVEEVARAVATLPRLRLRGLMAIPEPAGDLSAQRRPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + L LSMGMT D E A+ GAT VR+G+ IFG R
Sbjct: 183 HELLERLQAGGLALDTLSMGMTADLEAAVLEGATLVRVGTAIFGGR 228
>gi|209520451|ref|ZP_03269211.1| alanine racemase domain protein [Burkholderia sp. H160]
gi|209499096|gb|EDZ99191.1| alanine racemase domain protein [Burkholderia sp. H160]
Length = 240
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 107/228 (46%), Gaps = 9/228 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++I +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 12 LAHNLADVHERIARAAQAAGRDAQSVALLAVSKTFPADAVRAAHAAGQRAFGENYVQESL 71
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 72 DKIRTLADLRASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDDLPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
V +QVN E KSG+ + D + +L + GLM IP + L
Sbjct: 132 VCLQVNISGEASKSGVTVAEAADIAQQIAELPKLRLRGLMSIPEPAGDLDEQRAPHRELR 191
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VRIG+ IFG R
Sbjct: 192 ELFERLRNDGLALDTLSMGMSEDLEAAVLEGATIVRIGTAIFGARDYS 239
>gi|29346742|ref|NP_810245.1| hypothetical protein BT_1332 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338639|gb|AAO76439.1| putative racemase [Bacteroides thetaiotaomicron VPI-5482]
Length = 224
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 26/236 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ ++ ++I + K + ++ + K R +
Sbjct: 51 MTAKYE--TLPKDIEWHFIGHLQTNKIKYMIPYVEMIHGIDTYKLLAEVNKQAAKAGRIV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
IQ++ E K G P + KD + ++ + + GLM + F
Sbjct: 109 NCLIQIHVAQEETKFGFSPEECKDMLHAGEWKELSHIRICGLMGMASNTDDVEQINREFC 168
Query: 176 LLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LL+ + +E K +LSMGM+ D+ AIA+G+T VR+GS IFGER T
Sbjct: 169 LLNRLFQEIKANWFADSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNYNT 224
>gi|15615113|ref|NP_243416.1| hypothetical protein BH2550 [Bacillus halodurans C-125]
gi|10175170|dbj|BAB06269.1| BH2550 [Bacillus halodurans C-125]
Length = 228
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L+ ++++ + A R D V ++AV+K V + R AL G EN+++
Sbjct: 1 MSVKDQLKQIQEQMNEACERAGRNPDDVHIIAVTKYVSEARTREALEAGITHIGENRVEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + FIGSLQS KV ++++ FD + ++ R A + + + L
Sbjct: 61 GVEKRRAFPN--EGTWHFIGSLQSKKVKKMIADFDYLHSLDRLSLAKEIDRRLPD-GQAL 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E KSG+ P + F+ + + V GLM + P + +P+ ++ E+
Sbjct: 118 NCFVQVNVSGEQSKSGLKPEEVLPFIEELQTYPSIRVVGLMTMAPFVEDPEDTRWVFREL 177
Query: 181 --------ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
A+ ++LSMGM+ DF +AI GAT VRIG+ + G+
Sbjct: 178 RHLRDEVQAKRFNHAPCSELSMGMSNDFIVAIEEGATFVRIGTALVGK 225
>gi|299771278|ref|YP_003733304.1| hypothetical protein AOLE_15220 [Acinetobacter sp. DR1]
gi|298701366|gb|ADI91931.1| hypothetical protein AOLE_15220 [Acinetobacter sp. DR1]
Length = 230
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIQRACEHAQRSPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ +++ FIG +Q NK + FD + V R A LS + ++
Sbjct: 61 EALDKIEALQDL-EIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLQNQSD 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P++ + V Q ++ + GLM IP
Sbjct: 120 LNICLQVNIDGQDSKDGCAPDEVAELVAQISQLAKIKLRGLMVIPAPDNTAAFVDA--KA 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 178 LFDAVKEKHAHPEHWDTLSMGMSGDLDAAIAAGSTMVRVGTALFGKRDT 226
>gi|312143931|ref|YP_003995377.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
gi|311904582|gb|ADQ15023.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
Length = 234
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L Q +KI +A + R ++ + L+AVSK S +I+ G F EN++QE
Sbjct: 5 NLRANYQKIDEKIRKAAERSGRKREDIKLLAVSKTQSSAEIKALKELGVCCFGENRVQEL 64
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSR 118
++K ++ + F+G LQ NKV ++ + +IE+V + A ++ K R
Sbjct: 65 EEKDAELKSEDIVIDWHFVGHLQRNKVKYLMRMENCKMIESVDSFRLAKEVNKRARKNDR 124
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+PV IQ+N + K GI +DF + L ++GLM I P + + +
Sbjct: 125 IIPVLIQINIAEDDNKYGIKAENAEDFFKKIIKFKNLEIKGLMTILPYLDDEETLRKYFK 184
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ LT+LSMGMT D+++AI GAT VRIG +FGER
Sbjct: 185 ELKNLFDYLSENIKVLTELSMGMTNDYQIAIEEGATIVRIGRALFGEREY 234
>gi|240948416|ref|ZP_04752794.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
gi|240297242|gb|EER47800.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
Length = 230
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 10/228 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+I+ A +R + L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MSISQNLSQIQQRIQQIAHQCQRS--DIRLLAVSKTKPVQAIEEAIQAGQKAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + + L
Sbjct: 59 GVEKINYFKENKEIEWHFIGPLQSNKTRLVAEHFDWIQTVDRLKIAERLNEQRPEGKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + L ++GLM IP +P+ F +
Sbjct: 119 NVLIQINISDESSKSGIAPEEMLELAHKIASLPNLRLKGLMAIPKPESDPEQQKIAFRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + LSMGM+ D + AI G+T VRIG+ IFG+R
Sbjct: 179 EQLFHRLQQAFSGIDTLSMGMSDDMQSAIECGSTMVRIGTAIFGKRDY 226
>gi|288959470|ref|YP_003449811.1| hypothetical protein AZL_026290 [Azospirillum sp. B510]
gi|288911778|dbj|BAI73267.1| hypothetical protein AZL_026290 [Azospirillum sp. B510]
Length = 226
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 99/226 (43%), Positives = 141/226 (62%), Gaps = 7/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++ I +A R +V+LVAVSK ++ + AL+ GQ +F EN++QE
Sbjct: 1 MT--ARLDGVRRAIVETATACGRGDGAVTLVAVSKTHPAEAVEEALAAGQRVFGENRVQE 58
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-- 117
AK K+ L++ + D++L IG LQ+NKV + V+LFDVI+T+ R K A L+ EM K+
Sbjct: 59 AKAKFPALKERFADLELHLIGPLQTNKVKDAVALFDVIQTLDRPKLAEALAAEMAKEMAK 118
Query: 118 --RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
R I+VNTG E QK+GI P + + F+ CR + L V GLMCIPP P HF
Sbjct: 119 TGRRPRCLIEVNTGEEPQKAGIAPAEVEAFLADCRDRLGLPVTGLMCIPPVDEEPAMHFA 178
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LL+E+AR L ++SMGM+ D+E A+ GAT VR+G+ IFG RP
Sbjct: 179 LLAEMARRLDLPEISMGMSGDYETAVRFGATHVRVGTAIFGSRPYP 224
>gi|168010071|ref|XP_001757728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691004|gb|EDQ77368.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 103/232 (44%), Gaps = 16/232 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q+I+ ++ A RP SV LVAVSK K IR G F EN +QE K
Sbjct: 11 QALRDVMQRIQQASERANRPVSSVRLVAVSKTKPVKMIREVYDAGHRHFGENYVQELIDK 70
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFL 120
+ D + FIG LQSNK +V+ + V + + L
Sbjct: 71 APQFPE--DTKWHFIGHLQSNKAKALVTGVPNLYMVEGVDSEKVADHLDKAVSGLGRPPL 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V +QVNT E KSG+ P+ + + + L+ G M I P +
Sbjct: 129 KVLVQVNTSGEASKSGVEPSNCVELAKHIEEKCPNLHFSGFMTIGNLDYTSTPENFKTLA 188
Query: 178 ---SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ RE + +LSMGM+ DFELAI G+T+VR+GS IFG R T
Sbjct: 189 SCQEKTCRELGIPMEEFELSMGMSSDFELAIEMGSTNVRVGSTIFGAREYAT 240
>gi|220921031|ref|YP_002496332.1| alanine racemase domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219945637|gb|ACL56029.1| alanine racemase domain protein [Methylobacterium nodulans ORS
2060]
Length = 227
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 97/207 (46%), Positives = 125/207 (60%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKE 71
+I +A+ +R S++L+AVSK V + I AL GQ +F EN +QEAK KW +
Sbjct: 17 EIARAALDHERDPASIALIAVSKTVPGEGILPALEAGQRLFGENYVQEAKAKWPLLRERY 76
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
DV+L IG LQSNK E V LFDVI ++ R A+ L+ EM + R + +QVNTG E
Sbjct: 77 PDVELHMIGPLQSNKAREAVELFDVIHSLDRPSLAAALAKEMQRTGRRPRLLVQVNTGDE 136
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK G+ P + F+ CR + L + GLMCIPPA P PHF LL+ IA L LSM
Sbjct: 137 PQKGGVSPAEVDAFLAACRDTHGLTIAGLMCIPPAADPPSPHFALLARIAARHGLGLLSM 196
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF AI GAT VR+G+ IFG R
Sbjct: 197 GMSSDFAAAIQMGATHVRVGTAIFGAR 223
>gi|255035572|ref|YP_003086193.1| alanine racemase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254948328|gb|ACT93028.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053]
Length = 246
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + L +I + + RP DSV L+ +K V + +IR AL GQ + ENK+
Sbjct: 1 MNDPVIENLTHILDRIARACEASGRPADSVKLLLATKTVPADRIRHALLAGQTLIGENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQS 117
QE + K+ + Q FIG LQ+NK+ +++ I++V R + A L + +
Sbjct: 61 QEIRDKYEA-LSDIPHQTHFIGHLQTNKIKDVLKYNVSCIQSVDRLELAEKLEQRLAFEG 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHF 174
R + V+IQVNT +E K G+ P D V L+++GLM + F
Sbjct: 120 RHMDVFIQVNTSFEGSKFGVAPEAALDLVRQVACCGHLHIKGLMTIGLFSADNEQVRKCF 179
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LL I + + +LSMGM+ D E AI GAT VR+G+ IFGER
Sbjct: 180 RLLKSIQSQIISENIPGVGMAELSMGMSGDLETAIQEGATIVRVGTAIFGERIYP 234
>gi|257465703|ref|ZP_05630074.1| hypothetical protein AM202_04262 [Actinobacillus minor 202]
gi|257451363|gb|EEV25406.1| hypothetical protein AM202_04262 [Actinobacillus minor 202]
Length = 228
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 110/228 (48%), Gaps = 10/228 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+I+ A +R + L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MSISQNLSQIQQRIQQIAHQCQRS--DIRLLAVSKTKPVQAIEEAIQAGQKAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + L
Sbjct: 59 GVEKINYFKENEEIEWHFIGPLQSNKSRLVAEHFDWIQTVDRLKIAERLNEQRPVGKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V IQ+N E KSGI P + + L + GLM IP +P+ +
Sbjct: 119 NVLIQINISDESSKSGIAPEEMLELAHKIASLPNLRLRGLMAIPKPESDPEQQKVALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + LSMGM+ D + AI G+T VRIG+ IFG R
Sbjct: 179 EQLFHRLQQDFSGIDTLSMGMSDDMQSAIECGSTMVRIGTAIFGARDY 226
>gi|167571150|ref|ZP_02364024.1| hypothetical protein BoklC_15012 [Burkholderia oklahomensis C6786]
Length = 232
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 112/231 (48%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L +IE++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHHRIEDAARAAGREPRAVTLLAVSKTFPAGAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K L +++ FIG LQSNK + FD + TV R K A LS +
Sbjct: 61 EAIDKIESLADLRAELEWHFIGPLQSNKTRAVAERFDWVHTVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +P +
Sbjct: 121 PLDVCVQVNISGEASKSGVAPAEAAELARAVAALPALRLRGLMAIPEPAHDPDAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFERLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAREYS 231
>gi|332559311|ref|ZP_08413633.1| Alanine racemase domain protein [Rhodobacter sphaeroides WS8N]
gi|332277023|gb|EGJ22338.1| Alanine racemase domain protein [Rhodobacter sphaeroides WS8N]
Length = 221
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P++ FV CR L VEGLMCIPP G+ PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPSEADGFVAACRGM-DLPVEGLMCIPPEGGDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DF+ AIA+GAT VR+GS IFG R
Sbjct: 181 LRGLSMGMSGDFDAAIAAGATHVRVGSAIFGARDYS 216
>gi|296140431|ref|YP_003647674.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
gi|296028565|gb|ADG79335.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
Length = 259
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/223 (32%), Positives = 104/223 (46%), Gaps = 9/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I+ +A A R V L+ VSK V ++R+A++ G ENK+QEAK+
Sbjct: 26 AANLAAVRARIDAAATRAGRAPSDVRLLPVSKTVPQDRLRLAVAAGCTELGENKVQEAKR 85
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L V IG LQ+NK ++ + + + + A L + R L VY
Sbjct: 86 KSEELADLA-VAWAVIGHLQTNKAKDVAAFAAEFQALDSVRVAEALDRRLQAAGRGLDVY 144
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR- 182
+QVNT E K G+ P DF+ L V G M + + + R
Sbjct: 145 VQVNTSAEESKYGLSPGAVPDFLRELPAFASLRVRGFMTLAEFSADEARVRKCFRVLRRV 204
Query: 183 -------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LT+LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 205 RDRALDVDSGLTELSMGMSGDYEIAIEEGATCVRVGQAIFGSR 247
>gi|299065758|emb|CBJ36935.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
CMR15]
Length = 240
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGTTKTCALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGN---P 170
L V +++N + K G+ P+ + + +L + GLM +P +
Sbjct: 121 TLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPRLRLRGLMAVPEPADDPAAR 180
Query: 171 KPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L ++A + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRDLADRLRAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|228472644|ref|ZP_04057404.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
ATCC 33624]
gi|228276057|gb|EEK14813.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
ATCC 33624]
Length = 243
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ + +I+ + R V L+ +K V ++I+ AL+ G + AENK+QE
Sbjct: 3 TIIHNLQHVQARIDKACQAVGRDPKEVKLLLATKTVTPERIQQALAAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ +I+ +E++ R A L ++ + R +
Sbjct: 63 KEKYEALKATPHTN-HFIGHLQTNKIKDILKYDVSCVESLDRYDLAEKLHQKLSQAGREM 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
V+IQVNT E K G+ P + Q L++ GLM + F LL
Sbjct: 122 DVFIQVNTSGEESKFGVAPEEALALTQQVAQLPTLHIRGLMTIGLFSAEEDKVRKCFQLL 181
Query: 178 SEIARE---CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I ++ L +LSMGM+ D E+AIA GAT VR+G+ IFG+R
Sbjct: 182 KSIQQQIFALNLPDVQPHELSMGMSGDLEVAIAEGATIVRVGTAIFGQRIYP 233
>gi|269468040|gb|EEZ79758.1| hypothetical protein Sup05_0635 [uncultured SUP05 cluster
bacterium]
Length = 212
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 6/216 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +I+ A + V+L+AVSK + ++ + GQ F EN LQE+
Sbjct: 2 IAQNLAKIHHRID-----AVKHSQEVTLIAVSKTKPATDLQQTIDAGQRHFGENYLQESL 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K K D+ FIG +QSNK +I FD + +V R K A L+ + + L V
Sbjct: 57 EKI-ETLKGQDLIWHFIGPIQSNKTKQIAENFDWVHSVDRLKIAKRLNDQRPENLEKLNV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E KSG++ ++ V +++ G MCIP + + + +
Sbjct: 116 LLQVNIDNEPTKSGVLIDEIDALVAHFENFPNISLRGFMCIPSPANSASSFAKMSEILKK 175
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D ELAI +GAT VRIGS IFG+R
Sbjct: 176 HANLDALSMGMSSDLELAIENGATFVRIGSDIFGKR 211
>gi|49476195|ref|YP_034236.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
gi|49239003|emb|CAF28303.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
Length = 229
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 98/216 (45%), Positives = 138/216 (63%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ ++ I + R + + +AVSK V + IR L GQ +FAEN++QEA +K
Sbjct: 13 EAWKNLQKDITKTCKDYHRLAEEIQFIAVSKTVSVENIRPLLQAGQSVFAENRVQEATEK 72
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W ++ +++L IG LQSNK ++ V +FDVI+TV REK A LS+EM KQ + LP Y
Sbjct: 73 WSVLRQQFKNIELHLIGPLQSNKTAQAVKIFDVIQTVDREKIAKNLSIEMQKQKKTLPCY 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVN G E QKSGI P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 133 IQVNLGLEPQKSGIAPQEVVPFVARCKNHYGLDIIGLMAIPPVEENPGPYFALLAKLAKQ 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L KLSMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 193 ADLQKLSMGMSNDFKTALQFGSNVLRIGSALFGKRP 228
>gi|71064845|ref|YP_263572.1| hypothetical protein Psyc_0268 [Psychrobacter arcticus 273-4]
gi|71037830|gb|AAZ18138.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 251
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L Q K ++ + A R SV+L+AVSK ++ + GQ F EN LQEA
Sbjct: 25 NLTENWQQVKAQVAQACEQALRAPSSVTLLAVSKTKSAEMVATLARQGQYDFGENYLQEA 84
Query: 62 KKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + + +IGS+Q NK +I FD ++T+ R+ A L+ +
Sbjct: 85 IEKIQLLHEQVECEHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNNQRPDGML 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSG +P Q + +I + +L + GLM IP F
Sbjct: 145 PLNVLIQINIDNEDTKSGCLPEQLPELIIDIKNYKRLQLRGLMIIPAKANT--NAFKRTK 202
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + K LSMGM+ D AIA+G+T VR+G+ IFG R
Sbjct: 203 QLFDDIKRTHPELSQWDTLSMGMSDDMTDAIANGSTMVRVGTAIFGAR 250
>gi|293394484|ref|ZP_06638780.1| YggS family pyridoxal phosphate enzyme [Serratia odorifera DSM
4582]
gi|291422949|gb|EFE96182.1| YggS family pyridoxal phosphate enzyme [Serratia odorifera DSM
4582]
Length = 235
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 107/233 (45%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ + +I+ +A+ R + VSL+AVSK I A++ GQ F EN +Q
Sbjct: 1 MSTIQQNLQDVRGRIDAAAVNCARAPEEVSLLAVSKTKPVAAIAEAIAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
E K D + FIG LQSNK + FD TV R + A LS + +
Sbjct: 61 EGVDKIRHFAALPDGAGLEWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIAQRLSDQRPAE 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ+N E KSGI Q +L + G+M IP + +
Sbjct: 121 LPPLNVLIQINISDEQSKSGIELAQLPLLAQAVAALPRLTLRGVMAIPAPESDFPRQLAV 180
Query: 177 LSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FRQMAAAFQQLQQDYPQVDTLSMGMTDDMVAAIAAGSTLVRIGTAIFGARDYS 233
>gi|169824333|ref|YP_001691944.1| putative proline synthetase associated protein [Finegoldia magna
ATCC 29328]
gi|167831138|dbj|BAG08054.1| putative proline synthetase associated protein [Finegoldia magna
ATCC 29328]
Length = 226
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 17/232 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A ++ L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFAS----HGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + IG LQSNKV ++V +I ++ R + ++
Sbjct: 57 MSWKYDELKDSVN--YHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQ 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQ+N E QKSG+ + F+ ++ + V+GLM I P +P+ ++ ++
Sbjct: 115 DCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFAEDPEEIRWVFKKM 174
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 175 REIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN 226
>gi|302380630|ref|ZP_07269095.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna
ACS-171-V-Col3]
gi|303234039|ref|ZP_07320688.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna BVS033A4]
gi|302311573|gb|EFK93589.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna
ACS-171-V-Col3]
gi|302494964|gb|EFL54721.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna BVS033A4]
Length = 226
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 17/232 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A ++ L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFAS----HGETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + IG LQSNKV ++V +I ++ R + ++
Sbjct: 57 MSWKYDELKDSVN--YHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQ 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQ+N E QKSG+ + F+ ++ + V+GLM I P +P+ ++ ++
Sbjct: 115 DCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFADDPEEIRWVFKKM 174
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 175 REIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN 226
>gi|332970489|gb|EGK09479.1| YggS family pyridoxal phosphate enzyme [Psychrobacter sp.
1501(2011)]
Length = 232
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 115/233 (49%), Gaps = 19/233 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q Q+I+ + ++R SV+L+AVSK ++ I GQV F EN LQEA
Sbjct: 4 TLLQRWQEVTQQIQKACTDSERD--SVTLLAVSKTKPAEMITELAQAGQVHFGENYLQEA 61
Query: 62 KKKWIPL-------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+K + D+ +IG +Q NK +I FD + TV R+ A L+ +
Sbjct: 62 MEKMAEIKELVASIPATKDIVWHYIGHIQRNKTRDIAENFDWVHTVERDIIAKRLNEQRP 121
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ L V +QVN E KSG +P++ + + + LN+ GLM IP G+ F
Sbjct: 122 QALGKLNVLVQVNIDNEDSKSGCLPSELESLITTIKSYDNLNLRGLMIIPSKEGSDA--F 179
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ E + LSMGM+ D + AIA G+T VR+GS IFG R
Sbjct: 180 ERTKKLFDEIQQAHPELTQWDTLSMGMSGDMQQAIAHGSTMVRVGSAIFGARD 232
>gi|149185001|ref|ZP_01863318.1| hypothetical protein ED21_18147 [Erythrobacter sp. SD-21]
gi|148831112|gb|EDL49546.1| hypothetical protein ED21_18147 [Erythrobacter sp. SD-21]
Length = 221
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 82/215 (38%), Positives = 118/215 (54%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + I + A+R ++LVA+SK + I L G F EN++QEA +KW
Sbjct: 8 LEQVRSSIAQACNRARRDPGDITLVAISKRHTAATIEPLLIEGHRHFGENRVQEAAEKWP 67
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ VQL +G LQSNK E +LFDVI ++ R L+ K R +P ++Q
Sbjct: 68 ALREAHPAVQLHLVGQLQSNKAEEAAALFDVIHSLDRPSLVKALAKAFDKTGRLVPCFVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
V+ G E QK G P ++ + + + GLMC+PPA P P F L ++AR+
Sbjct: 128 VDVGDEPQKGGC-PVGDLPALLTQARDADIPLAGLMCLPPADIEPAPFFAFLDKLARDHG 186
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L SMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 187 LEGRSMGMSGDYETAIMLGATHIRVGTALFGERPA 221
>gi|71281809|ref|YP_270331.1| hypothetical protein CPS_3663 [Colwellia psychrerythraea 34H]
gi|71147549|gb|AAZ28022.1| conserved hypothetical protein TIGR00044 [Colwellia psychrerythraea
34H]
Length = 239
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 18/237 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKR---------PKDSVSLVAVSKMVDSKKIRVALSCGQVI 52
++ + L K +I+ + + R VSL+AVSK + + A GQ
Sbjct: 3 NVKDNLNKVKAQIQQACQQSGRLTPLAELSKQSSPVSLLAVSKTKPTSLVEQAYLAGQHD 62
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
F EN LQEA +K L ++ FIG +QSNK +I S F + +V REK A L+
Sbjct: 63 FGENYLQEAVEKIAELANLPEIVWHFIGPIQSNKTKQIASNFSWVHSVDREKIALRLNQH 122
Query: 113 ---MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
L + +QVN E KSGI Q + +L + GLM + P
Sbjct: 123 LTDDNCHDTPLNICLQVNISNEESKSGISIEQVFSLAKIVDSCDKLTLRGLMAV-PEKNA 181
Query: 170 PKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
PK + + ++ + K + LS+GM+ D + A+A G+T VRIG+ IFG R +
Sbjct: 182 PKACYEQMQQLFTQLKKQYPSVDTLSLGMSNDLDNAVAHGSTMVRIGTAIFGARENK 238
>gi|296282181|ref|ZP_06860179.1| hypothetical protein CbatJ_01105 [Citromicrobium bathyomarinum
JL354]
Length = 223
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 87/223 (39%), Positives = 120/223 (53%), Gaps = 6/223 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +++I + +AKR + V+L+AVSK ++I L GQ +F EN++QE
Sbjct: 1 MDSAAALTQVEERIVRACTIAKRERKEVNLIAVSKTHPVERIEPLLEAGQRLFGENRVQE 60
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW + DV+L IG LQSNK + +LFDVI ++ R L+ K R
Sbjct: 61 AQDKWPELRERFPDVELHLIGQLQSNKAEDAAALFDVIHSLDRPSLLKALAKAYDKLGRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+P +IQV+ G E QK G + R+ + GLMCIPPA P P F LL E
Sbjct: 121 VPCFIQVDVGEEDQKGGCAIADLPALIDQAREAEIPLL-GLMCIPPADKEPAPFFALLGE 179
Query: 180 IAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR E SMGM+ D+E AI GAT +R+GS +FG R
Sbjct: 180 LARRHEPEPGAWAQSMGMSGDYETAIMLGATHIRVGSALFGAR 222
>gi|77464422|ref|YP_353926.1| hypothetical protein RSP_0844 [Rhodobacter sphaeroides 2.4.1]
gi|77388840|gb|ABA80025.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 221
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACRAM-DLPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 181 LQGLSMGMSGDFEAAIAVGATHVRVGSAIFGARDYS 216
>gi|150390564|ref|YP_001320613.1| alanine racemase domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950426|gb|ABR48954.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF]
Length = 231
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L +I+ +A+ ++ + V L+AV+K VD ++ + G ENK+QE
Sbjct: 1 MSIEARLNTTLDRIKEAAVRGEQKHEEVRLIAVTKTVDIDVMQQLIDLGVRDMGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ V+ IG LQ NKV I+ D I ++ A + + K +R +
Sbjct: 61 LTRKYEA--LGNKVKWHMIGHLQRNKVKYIIDKVDFIHSLDSYALALEIEKQAGKINRVI 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQVN E K G+ P T+ + + + + GLM + P + NP+ ++
Sbjct: 119 ECLIQVNISGEESKYGLTPKATEGLLEKIKDLSHVQIVGLMTMAPYVDNPEETRMYFRDL 178
Query: 181 A-------RECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGMT DF++AI G+ VR+G+ I GER
Sbjct: 179 KILSSTLEKKYGPTATMKYLSMGMTNDFQIAIEEGSNLVRVGTAILGERNY 229
>gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341 [Janthinobacterium sp. Marseille]
gi|151280170|gb|ABR88580.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 234
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 84/232 (36%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I ++A A+R V L+AVSK ++ + A GQ F EN LQ
Sbjct: 1 MSVIRQNLQAVRQRITDAANSARRDVHGVELLAVSKTFGAEAVIAAAEAGQGAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA +K ++ + FIG +QSNK I FD + +V REK A LS +
Sbjct: 61 EALEKIAEVKATRPDLQLEWHFIGPIQSNKTRPIAENFDWVHSVDREKIAQRLSEQRPAH 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + +QVN E KSG++P++ +L + GLM IP A+G+ +
Sbjct: 121 LPPLNICLQVNISGEASKSGVLPSEALAVAQAIAALPRLCLRGLMAIPEAVGDAEQQRAP 180
Query: 177 LSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ A KL LSMGM+ D + AIA GAT VRIGS IFG R
Sbjct: 181 FRQMHALLEQLRAEGLKLDTLSMGMSGDMDAAIAEGATIVRIGSAIFGTREY 232
>gi|302879877|ref|YP_003848441.1| alanine racemase domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302582666|gb|ADL56677.1| alanine racemase domain protein [Gallionella capsiferriformans
ES-2]
Length = 231
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 84/227 (37%), Positives = 112/227 (49%), Gaps = 9/227 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ + + +A+LA R D V+L+AVSK + +R A GQ FAE+ LQEA
Sbjct: 4 IASNLQAVRAAMAAAAVLADRTADEVTLLAVSKTFPATAVRSAFQAGQRRFAESYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG +QSNK I F + +V R K A LS + L
Sbjct: 64 DKIAALDDL-GIEWHFIGPVQSNKTRPIAEHFCWVHSVDRLKIAERLSAQRPVSLPPLQC 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E KSG+ P++ L + GLM +P +P + F L E
Sbjct: 123 CLQVNISDEDSKSGVRPDEVSQLAHEIACLPNLQLRGLMAVPAPTDDPLVQRAAFARLRE 182
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + K L LSMGM+ DF AIA GAT VRIGS IFGER
Sbjct: 183 LYLQLKSEGLPLDTLSMGMSHDFAAAIAEGATIVRIGSAIFGERNYS 229
>gi|320538009|ref|ZP_08037914.1| pyridoxal phosphate enzyme, YggS family [Treponema phagedenis
F0421]
gi|320145166|gb|EFW36877.1| pyridoxal phosphate enzyme, YggS family [Treponema phagedenis
F0421]
Length = 232
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + ++ K++I + A R V L+ +K + I A CG+++ ENK+Q
Sbjct: 1 MNVIQQNIEEVKRRIAEACARAGRDPSEVKLLMATKTIAPDWILQAFECGELLIGENKVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K+ + FIG LQ+NK+ +++ D IE+V R A L+ + + +
Sbjct: 61 ELAEKYEA-LSAVPHRAHFIGHLQTNKIKDVIQYADCIESVDRFDLAEKLARRLRFEGKT 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYL 176
+ V IQVNT E KSG P + + L ++GLM + + L
Sbjct: 120 IDVLIQVNTSAEETKSGCAPEEALSLIKQVSAFPDLRIKGLMTIGLFSSDTEKVRACYRL 179
Query: 177 LSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L I +C ++ LSMGM+ DFE+AI G+T VR+G+ IFGER
Sbjct: 180 LKNIQEDCIKLALPNVEMAVLSMGMSGDFEIAIEEGSTEVRVGTSIFGERVY 231
>gi|319406300|emb|CBI79937.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 226
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 103/215 (47%), Positives = 142/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +Q+I + RP +++ L+A SK V + I L GQ +FAEN++QEA +K
Sbjct: 10 DAWRNLQQEIAKTCQDYHRPVENIQLIAASKTVSANNIVPLLQAGQFLFAENRVQEAAEK 69
Query: 65 WIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR++++ +L IG LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP Y
Sbjct: 70 WPSLRQKFNTIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKKLAEEMHKQKKHLPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVN G E QKSGI P + K FV C+ Y L++ GLM IPP NP P+F LL+++A+E
Sbjct: 130 IQVNIGLESQKSGIFPQEVKAFVAQCKNNYGLDIIGLMAIPPIQENPGPYFALLAKLAKE 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 190 TGLPKLSMGMSNDFKIALQFGANVLRIGSALFGSR 224
>gi|307244143|ref|ZP_07526261.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
stomatis DSM 17678]
gi|306492514|gb|EFM64549.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
stomatis DSM 17678]
Length = 233
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 15/234 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ K I +++ R + V L+ V+K VD I AL G ENK Q
Sbjct: 1 MSDISVRIDQVKSNIRDASNKVNRNPEEVLLLGVTKTVDVDVIEEALEYGITDVGENKPQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++K+ + IG+LQ+NKV I+ D+I ++ R A ++ R
Sbjct: 61 ELQRKYG--LIGNRAKWHQIGTLQTNKVKYIIDKVDLIHSLDRMGLAEEINKRADSIGRD 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ +QVN E K GI + F+ C + ++ + GLM + P + +
Sbjct: 119 IRCLVQVNVSKEETKHGIYVEDLETFIRECADKFKRIKIVGLMTMAPDSDDEDEVRAIFR 178
Query: 179 EIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ +LSMGM+ D+++AI G+T +R+G+ IFG+R
Sbjct: 179 KLKEVFENIKNMSIEGVEMKELSMGMSGDYQIAIEEGSTIIRVGTSIFGKRNYN 232
>gi|296114825|ref|ZP_06833474.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
23769]
gi|295978639|gb|EFG85368.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
23769]
Length = 295
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 1/221 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I N+A A R ++LVAVSK ++ AL GQ+ F EN++QEA
Sbjct: 73 DIATALATVRARIANAARSAGRDPSDITLVAVSKFHPRARVVAALRAGQMTFGENRVQEA 132
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR +W D++L IG LQ+NK + V + D+IE++ R ++ + R
Sbjct: 133 ADKFPSLRAQWPDLRLNIIGGLQTNKAYDAVRIADMIESLDRATLCDAIARAADRVGRLP 192
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNTG E QKSG+ + F+ ++ V GLMCIPP +P PHF L+ +
Sbjct: 193 RLLVQVNTGDETQKSGVAVEEADAFITAAIARFGDAVAGLMCIPPVDQDPTPHFRTLATM 252
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L +SMGM+ DFE AI +GAT VR+GS IFG RP +
Sbjct: 253 AGRHGLGVISMGMSADFEQAIVAGATHVRVGSAIFGPRPTR 293
>gi|71901698|ref|ZP_00683773.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|71728540|gb|EAO30696.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
Length = 261
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK VD IR++ G ENK Q+A
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A +L + + R L
Sbjct: 83 YHKWEAMSDLTDLHWSVIGHLQTNKAKLVARFASEFQALDSLRVAEVLERRLQIEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVNT E K G+ P + FV L V GLM + G+ +++
Sbjct: 143 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLR 202
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 203 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 250
>gi|227536795|ref|ZP_03966844.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227243351|gb|EEI93366.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 244
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 15/234 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + + + +I + A R + V L+ +K V +++I+VAL GQ + AENK+
Sbjct: 1 MSQEIIENIALIQARIAKACTAAGRDRSEVKLLLATKTVPAERIKVALQAGQTLIAENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQS 117
QE K+K+ L+ V FIG LQ+NKV +++ I+++ R + A L + ++
Sbjct: 61 QEIKEKYEALKDIPHVN-HFIGHLQTNKVKDLLKYDITCIQSLDRAELAQKLHQRLKAEN 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHF 174
R + V+IQVNT +E K G+ P++ D V L ++GLM I + F
Sbjct: 120 RTIEVFIQVNTSFEESKFGVSPDKVVDLVKEVALLDTLKIKGLMTIGLLSTESEKVRQCF 179
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL +I ++ ++ +LSMGM+ D E AIA GAT VR+G+ IFG+RP
Sbjct: 180 RLLKDIQQQIIALDIPHVEMRELSMGMSGDLETAIAEGATVVRVGTAIFGQRPT 233
>gi|229541188|ref|ZP_04430248.1| alanine racemase domain protein [Bacillus coagulans 36D1]
gi|229325608|gb|EEN91283.1| alanine racemase domain protein [Bacillus coagulans 36D1]
Length = 225
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +KIE + A R + V ++AV+K V +++ + AL G EN+
Sbjct: 1 MKVSENLARINEKIEKACQRAGRSRGDVEIIAVTKYVTTERAKEALEAGIQHLGENRDDG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ L FIG+LQ+ KV I+ I ++ R A + K + +
Sbjct: 61 LLKKYEALGNR--PVWHFIGTLQTRKVKNIIDKVSYIHSLDRLSLAEEIEKRAAKLDKEI 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN E K G+ P Q DFV + + V GLM + P + +
Sbjct: 119 NCFIQVNVSGEESKHGMAPGQVVDFVRKLKDFPHIRVAGLMTMAPLTEDEDVIRRTFRGL 178
Query: 181 AR------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ L +LSMGM+ DFE+A+ GAT VRIG+ + G
Sbjct: 179 KQLQQDIESLHLDYAPCRELSMGMSNDFEIAVEEGATFVRIGTALVG 225
>gi|332878865|ref|ZP_08446580.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683216|gb|EGJ56098.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 242
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ KQ+I + R + V L+ +K V ++I++AL G + AENK+QE
Sbjct: 3 NILQNIEIIKQRIAAACTRVGRKPEEVKLLLATKTVTPERIKIALKAGNTLIAENKIQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ EI+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDVPHTN-HFIGHLQTNKIKEILRYEVSCVESVDRIDLAQKLHNRLASEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
++IQVNT E K G P + D V Q L+++GLM + F LL
Sbjct: 122 DIFIQVNTSNEESKFGADPAEVLDLVKQVAQLPTLHIKGLMTIGLFSAETEKVRACFKLL 181
Query: 178 SEIARE---CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E L +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KRLQQEIIALGLPNVDPQELSMGMSGDLETAIEEGATIVRVGTAIFGQRIYP 233
>gi|146301878|ref|YP_001196469.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146156296|gb|ABQ07150.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 243
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ +IE + + R V L+ +K V +++IR+A+ G+ + ENK+QE
Sbjct: 4 NIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKMQEF 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K K+ +++ FIG LQ+NKV +++ I+++ R A L ++ K++R +
Sbjct: 64 RDKDSE-LKDLNIERHFIGHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRAIA 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V++QVNT +E K G+ P + F+ R+ L ++GLM I +P +LL
Sbjct: 123 VFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKGLMTIGLLDVEKEKMRPSLHLLK 182
Query: 179 EIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
EI + L LSMGM++D ELAIA G+ VR+G+ IFG R
Sbjct: 183 EIRDQIYEAEIEGLSNLK-LSMGMSQDLELAIAEGSNLVRVGTSIFGNR 230
>gi|304440207|ref|ZP_07400097.1| YggS family pyridoxal phosphate enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371256|gb|EFM24872.1| YggS family pyridoxal phosphate enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 228
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 14/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ +KIE + + + V L+AV+K I+ A+ G ENK+QE
Sbjct: 1 MDIKRNLEDVLKKIEIAEKKS-ISGEKVELIAVTKTHGIDIIKEAIELGVTDIGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ DV IG+LQSNKV I +I ++ R A + + + +
Sbjct: 60 FTTKYEK--LGNDVNFHMIGTLQSNKVKYIYDKAKLIHSLDRMSLAKEIERKAQASNIIV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ ++T+ F+ L + GLM I + +
Sbjct: 118 NCLVQVNISNEESKGGVSFSETEKFIESLLDFKNLKIVGLMGIAKNTDDLSEIRDSFRRL 177
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E ++ LSMGM+ DFE+AI G+ VRIGS IFG+R
Sbjct: 178 YNLKEKIKKQNIEELEMKYLSMGMSSDFEMAIEEGSNMVRIGSSIFGKRDY 228
>gi|304404025|ref|ZP_07385687.1| alanine racemase domain protein [Paenibacillus curdlanolyticus YK9]
gi|304347003|gb|EFM12835.1| alanine racemase domain protein [Paenibacillus curdlanolyticus YK9]
Length = 238
Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++Q ++I + + R + V++VAV+K V + +R ++ + EN+ Q A
Sbjct: 6 TLAERIQEVDKRITAACERSGRDRRDVNVVAVTKYVSLETVRDVVAHDVLHLGENRWQNA 65
Query: 62 KKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K KW +IGSLQS K +++ F I ++ R ++ K
Sbjct: 66 KPKWEAFNEQPANEQPVWHYIGSLQSKKAKDVIGKFTYIHSLDRISLVEAIADRADKLGL 125
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+P +IQVN E K G+ P + + F+ +Q + GLM + P P+ +
Sbjct: 126 VVPCFIQVNVSGEASKQGLEPEELESFIRTLKQFPSIKPIGLMTMAPFEAEPEETRPVFR 185
Query: 179 E---IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + + LT+LSMGM+ DFE+AI GAT VR+G+ + G+
Sbjct: 186 ELRLLRDKLNAQGILDEPLTELSMGMSNDFEVAIEEGATWVRLGTILVGK 235
>gi|326388562|ref|ZP_08210155.1| hypothetical protein Y88_2962 [Novosphingobium nitrogenifigens DSM
19370]
gi|326206813|gb|EGD57637.1| hypothetical protein Y88_2962 [Novosphingobium nitrogenifigens DSM
19370]
Length = 234
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I+++A +A R + V+LVA+SK + I ++ GQ +F EN++QEA+ KW
Sbjct: 21 LAAIRARIDHAAKIAGRKGEDVTLVAISKTKPASAILPLIAEGQRVFGENRVQEAQDKWP 80
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D +L +G LQSNK V LFD I ++ R + L+ M K R +P+++Q
Sbjct: 81 ALIEAYPDCKLHLVGQLQSNKAEAAVRLFDCIHSLDRPSLLTALAHAMDKVGRRVPLFVQ 140
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G + R L V+GLMC+PPA P F LL ++A +
Sbjct: 141 VNIGEEEQKGGCAIADLPALLTQARAA-DLPVQGLMCVPPAGIEAAPFFALLGKLAADHG 199
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE A+ GAT VR+GS +FG R
Sbjct: 200 LSGLSMGMSEDFETAVMLGATHVRVGSALFGRR 232
>gi|138894666|ref|YP_001125119.1| hypothetical protein GTNG_0996 [Geobacillus thermodenitrificans
NG80-2]
gi|196247719|ref|ZP_03146421.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
gi|134266179|gb|ABO66374.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212503|gb|EDY07260.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
Length = 224
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K +++ + + L G V EN+ +
Sbjct: 1 MTVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ FIG+LQS KV EI+ D I ++ R A + + R +
Sbjct: 61 LLQKYE--VIGKQATWHFIGTLQSRKVKEIIDKVDYIHSLDRLSLAKEIEK---RAVRPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G+ P++T F+ R + V GLM + P + ++
Sbjct: 116 KCFVQVNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAPHTEDKSVLRACFRQL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L T+LSMGM+ D+E+AI GAT VRIGS + G
Sbjct: 176 RMLKERVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGS 223
>gi|92115169|ref|YP_575097.1| hypothetical protein Csal_3054 [Chromohalobacter salexigens DSM
3043]
gi|91798259|gb|ABE60398.1| Protein of unknown function UPF0001 [Chromohalobacter salexigens
DSM 3043]
Length = 235
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + ++ + A R S L+AVSK + +R A GQ F EN +QEA
Sbjct: 5 NIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENYVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + F + T+ RE+ A L+ + L
Sbjct: 65 LDKQAALTDLDAIVWHFIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPALGPLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVN E KSG+ P + QL + GLM +P +E+
Sbjct: 125 VCLQVNVSGEASKSGVAPADLPALADVVATLPQLRLRGLMTLPAPSDELATQRRPFAELR 184
Query: 182 RECK----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ D E A+ GAT VR+G+ IFG+R +
Sbjct: 185 ELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPR 234
>gi|330502471|ref|YP_004379340.1| putative alanine racemase [Pseudomonas mendocina NK-01]
gi|328916757|gb|AEB57588.1| putative alanine racemase [Pseudomonas mendocina NK-01]
Length = 269
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L +++IE + R +V L+ VSK +R+A + G + ENK+QEA
Sbjct: 25 DFRHNLAEVQRRIEAACQRVGRDPATVRLLPVSKTKPEASLRLAYAAGCRMLGENKVQEA 84
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW ++ D+Q IG LQ+NK + + + + A L + + R L
Sbjct: 85 HGKWQSMQDLGDLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQVEGRALD 144
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
V++QVNT E K G+ P FV L V GLM + +
Sbjct: 145 VFVQVNTSGEASKYGLAPEDVAAFVQALPAFSALRVRGLMTLALFSCEAERVRQCFVRLR 204
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +L LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 205 ELRDRLRQEAPSGIELEALSMGMSGDFEIAIEEGATVVRVGQAIFGAR 252
>gi|86144206|ref|ZP_01062542.1| hypothetical protein MED217_08185 [Leeuwenhoekiella blandensis
MED217]
gi|85829336|gb|EAQ47802.1| hypothetical protein MED217_08185 [Leeuwenhoekiella blandensis
MED217]
Length = 219
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ FK ++ + V+LVAVSK ++ ++ A GQ IF ENK+QE
Sbjct: 3 DITQNLKQFKSEL----------PEDVTLVAVSKTKPNEDLQEAYDAGQRIFGENKIQEM 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW D+Q IG +Q+NKV + +I + R K ++ E K R +
Sbjct: 53 TDKWKA--LPKDIQWHMIGHVQTNKVKYMAPYVSLIHSADRLKLFKEINKEAKKNERVID 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V +QV E K G+ P + K F+ + +N+ GLM + + + ++
Sbjct: 111 VLLQVKIAEEDSKFGMPPEEAKTFLEENKAANYPNVNIVGLMGMASFVDDETQIKREFAQ 170
Query: 180 I-------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGM+ D++LA+ G+T VR+GS IFG R
Sbjct: 171 LEKIYNTFKEQYAFSVLSMGMSGDYKLALEYGSTMVRVGSAIFGARNYN 219
>gi|145631538|ref|ZP_01787306.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
R3021]
gi|144982883|gb|EDJ90400.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
R3021]
Length = 252
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 11/222 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQETVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIG 211
+S++ + K + LSMGMT D AI G+T VRIG
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIG 222
>gi|300858981|ref|YP_003783964.1| hypothetical protein cpfrc_01564 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686435|gb|ADK29357.1| hypothetical protein cpfrc_01564 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206679|gb|ADL11021.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis C231]
gi|302331231|gb|ADL21425.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis 1002]
gi|308276921|gb|ADO26820.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis I19]
Length = 232
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ ++I NSA A R V L+AV+K + +R A++ G + ENK QE K
Sbjct: 12 EAVLERIVNSAERAGRDAAEVRLIAVTKTHPVEVVRDAVAAGMTVLGENKPQELSSKASK 71
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ V IG LQ NK E+ + + + A L ++ R L V++QVN
Sbjct: 72 VS---GVTWCAIGRLQRNKAKEVAAWAQEFHALDSLRLADALQRKLEAADRMLEVFVQVN 128
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC 184
T E+QK GI P + +F+ +L+V GLM + P + F L E+
Sbjct: 129 TSGEVQKGGIAPAEAAEFLGQLADYDRLHVRGLMTMARNSPEEAVVRSSFVQLRELRDTL 188
Query: 185 K-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T+LSMGM+ DFE AI GATSVR+GS +FG R
Sbjct: 189 QPYFPTATELSMGMSGDFEWAIEEGATSVRVGSALFGPR 227
>gi|329922721|ref|ZP_08278273.1| pyridoxal phosphate enzyme, YggS family [Paenibacillus sp. HGF5]
gi|328942063|gb|EGG38346.1| pyridoxal phosphate enzyme, YggS family [Paenibacillus sp. HGF5]
Length = 229
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +Q+I + + R ++ V+++AV+K V L G + EN+ Q+
Sbjct: 1 MSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AQAKWNALGSR--GTWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
+QVN E K G+ P Q +F+ + V GLM + P +P F L
Sbjct: 119 SALMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ E LT+LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 179 RQLRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGK 226
>gi|260599280|ref|YP_003211851.1| hypothetical protein CTU_34880 [Cronobacter turicensis z3032]
gi|260218457|emb|CBA33591.1| UPF0001 protein yggS [Cronobacter turicensis z3032]
Length = 247
Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +QKI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 11 MSETERNLTQVRQKISAAAQRCGRAPEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQ 70
Query: 60 EAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E +K + R + FIG LQSNK + FD TV R + A+ L+ + +
Sbjct: 71 EGVEKILHFRDAGVEGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEM 130
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQVN E KSGI ++ +L + GLM IP F +
Sbjct: 131 TPLNVLIQVNISDEQSKSGIALSELDTLAEQIAALPRLRLRGLMAIPAPEKEYARQFAVA 190
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 191 REMAAAFTALKARYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 241
>gi|89052905|ref|YP_508356.1| hypothetical protein Jann_0414 [Jannaschia sp. CCS1]
gi|88862454|gb|ABD53331.1| Protein of unknown function UPF0001 [Jannaschia sp. CCS1]
Length = 217
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L ++ A R ++L+AVSK+ ++++ L+ G IF EN++QEA+ +W
Sbjct: 3 LSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGRWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +D + L IG LQ+NK + V +F I TV R K A L+ ++ ++IQ
Sbjct: 63 DFQARFDGIDLHLIGPLQTNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G +P++ F+ + L + GLMCIPP P HF LL++IA+
Sbjct: 123 VNTGEEPQKAGCLPSEADAFI-ADARAMDLPLLGLMCIPPVDEEPSLHFALLAKIAKRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ LSMGM+ DFE AIA GAT +R+GS IFGER
Sbjct: 182 LSGLSMGMSSDFETAIAQGATHIRVGSAIFGERTP 216
>gi|258404223|ref|YP_003196965.1| alanine racemase domain-containing protein [Desulfohalobium
retbaense DSM 5692]
gi|257796450|gb|ACV67387.1| alanine racemase domain protein [Desulfohalobium retbaense DSM
5692]
Length = 235
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++Q K+ + +A A R V+LVAVSK + I + GQ F EN +QEA
Sbjct: 8 AERVQEIKETMAAAARAADRDPAEVTLVAVSKYQPIEAIAAVHAAGQTHFGENYIQEALD 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K +Q FIG LQ NK + FD++ TV + A +L + + +
Sbjct: 68 KQDQCDIS-PIQWHFIGHLQRNKAKFVPGRFDLVHTVDSVRLAQMLDKKAAEAGVVQAIL 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QV+ E QK+G+ P ++ + Q L ++G M +PP +P +P F L E+
Sbjct: 127 LQVSLAGEEQKAGLAPEALEETLDTVGQLPHLQLQGFMTMPPYFNDPERVRPLFCRLREL 186
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E + L LSMGM+ DFE+AIA GAT VR+G+ IFG RP ++
Sbjct: 187 RDEAQNQLGRELPHLSMGMSGDFEVAIAEGATLVRVGTRIFGPRPQKS 234
>gi|152994581|ref|YP_001339416.1| alanine racemase domain-containing protein [Marinomonas sp. MWYL1]
gi|150835505|gb|ABR69481.1| alanine racemase domain protein [Marinomonas sp. MWYL1]
Length = 242
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L Q+++ +R SV L+AVSK + A + GQ F EN +QEA
Sbjct: 13 IKTNLTRVTQQVDQLVQQYQRETGSVRLLAVSKTKPLSALEAAYAAGQRAFGENYVQEAV 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D++ FIG +QSNK I + ++ REK A LS + K L V
Sbjct: 73 DKFHALAHLVDIEWHFIGPIQSNKSRLIAETMHWVHSIDREKIARRLSEQRPKDLPPLNV 132
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF-------Y 175
IQVN E K+G+ ++ D V L + L + GLM IP + +
Sbjct: 133 CIQVNISGEESKAGVALSELNDMVALITELPNLRLRGLMAIPAPQKSHEAQCLVYEPLRQ 192
Query: 176 LLSEIARECKL-TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+++ + LS+GM+ D AI SG+T VR+G+ IFGER
Sbjct: 193 AFVELSKSDSMIDTLSIGMSGDLPAAIQSGSTMVRVGTAIFGERDYS 239
>gi|319649649|ref|ZP_08003805.1| hypothetical protein HMPREF1013_00409 [Bacillus sp. 2_A_57_CT2]
gi|317398811|gb|EFV79493.1| hypothetical protein HMPREF1013_00409 [Bacillus sp. 2_A_57_CT2]
Length = 228
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + I+ + I A R + ++L+AV+K V +++ + AL G V EN+ +
Sbjct: 1 MRVEDNLKQIESAIKEACIKANRKPEEITLIAVTKYVSAERAQEALEAGIVHLGENRDEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + FIG+LQ+ KV I+ D I ++ R A + + R +
Sbjct: 61 LLAKWD--VLKDKPTWHFIGTLQTRKVKNIIDKVDYIHSLDRLSLAKEID---KRADRKI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI P + DF+ LNV GLM + P N + ++
Sbjct: 116 NCFVQVNVSGEESKQGINPEEVADFISCLADYKNLNVIGLMTMAPLSDNEELLRSCFRKL 175
Query: 181 A------RECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ +LSMGM+ DF LAI GAT VRIG+ + G+
Sbjct: 176 KNLQTKVKDLGFDFAPCTELSMGMSNDFSLAIEEGATMVRIGTALVGQ 223
>gi|315225144|ref|ZP_07866961.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga ochracea
F0287]
gi|314944827|gb|EFS96859.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga ochracea
F0287]
Length = 241
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +Q+I N+ R + V L+ +K V ++I+VAL+ G + AENK+QE
Sbjct: 3 NILQNIALVQQRIANTCERVGRKPEEVKLLLATKTVTPERIKVALNAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ +I+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDTPHTN-HFIGHLQTNKIKDILRYEVSCVESVDRLDLAQKLHNRLESEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
++IQVNT E K G P++ + V L+++GLM + F LL
Sbjct: 122 DIFIQVNTSNEENKFGADPSEVLNLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFKLL 181
Query: 178 SEIARE---CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E L +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KHLQQEIIALNLPNVDPRELSMGMSGDLETAIEEGATIVRVGTAIFGKRIYP 233
>gi|39997639|ref|NP_953590.1| hypothetical protein GSU2544 [Geobacter sulfurreducens PCA]
gi|39984531|gb|AAR35917.1| conserved hypothetical protein TIGR00044 [Geobacter sulfurreducens
PCA]
gi|298506579|gb|ADI85302.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
sulfurreducens KN400]
Length = 231
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 112/232 (48%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L KI +A A R SV LVAVSK + ++ + A GQ +F EN +QE
Sbjct: 1 MAIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R V+ FIG LQSNKV + L I +V R A + + K
Sbjct: 61 FTAKAREVRDP--VEWHFIGHLQSNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN E KSG ++ D V + V GLM +PP +P+ E+
Sbjct: 119 DILVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMTMPPFFDDPEEARPYFREL 178
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
R +T+LSMGM+ DFE A+ GAT VRIG+ +FGER +
Sbjct: 179 RRLADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYR 230
>gi|114566485|ref|YP_753639.1| hypothetical protein Swol_0953 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337420|gb|ABI68268.1| protein of unknown function UPF0001 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 225
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N + K KIE +A + R V+LVAVSK VD + +R A S G F EN++ E
Sbjct: 4 IKNNWESIKNKIEQAAFKSGRKASEVTLVAVSKTVDIETVRRAHSLGINDFGENRVNELL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + IG LQ+NKV +IV +I ++ R + A L + + +PV
Sbjct: 64 SKRES---LPGINWHLIGRLQTNKVKDIVGRTTLIHSLDRWRLAQELDKRGLVLEQEVPV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
IQ+N E QK+G P + + + Q L + GLM + P +P+ L E+
Sbjct: 121 LIQLNISGEEQKAGFKPTELGEVLAAAEQFKALRIYGLMTMAPLDPDPERARPLFRELFQ 180
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ L LSMGM++D+ +AI GA VRIGS +F
Sbjct: 181 LRQKFIDRNYKNVNLKYLSMGMSQDYAVAIEEGANLVRIGSALF 224
>gi|292487079|ref|YP_003529949.1| hypothetical protein EAMY_0591 [Erwinia amylovora CFBP1430]
gi|292900537|ref|YP_003539906.1| hypothetical protein EAM_2839 [Erwinia amylovora ATCC 49946]
gi|291200385|emb|CBJ47513.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291552496|emb|CBA19541.1| UPF0001 protein yggS [Erwinia amylovora CFBP1430]
Length = 237
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISTAAAKCGRDPQEITLLAVSKTKPASAVEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 V-DKIQLLANPALAWHFIGPLQSNKSRLVAENFDWCHTVDRLRIASRLSQQRPDNLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQ+N E KSGIM + +L + GLM IP + + ++
Sbjct: 122 ILIQINISAEPSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDSYDSQLAVCQQMT 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFKQLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 228
>gi|322384109|ref|ZP_08057827.1| hypothetical protein PL1_3547 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321151189|gb|EFX44498.1| hypothetical protein PL1_3547 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 227
Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ ++IE++ + R + V ++AV+K V L G EN+ Q+
Sbjct: 1 MQLQARISQVGKRIEDACRRSGRDPEDVQVIAVTKYVSLSATEQVLEHGLTHIGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK KW L + FIG LQ+NKV +++ F I ++ R A ++ + K +
Sbjct: 61 AKGKWEKLGSQ--GTWHFIGHLQTNKVKDVIGKFAYIHSLDRMSLALEINKQAEKLQIVV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
P +IQ+N E K G+ P F + + + GLM + P +P F L
Sbjct: 119 PCFIQINVSGEESKYGMQPEDLFSFAEQVKPLKYIRIVGLMTMAPYETQPEQTRPVFTGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E + +LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 179 RNLRDELNERKVLPYEVKELSMGMSNDFEVAIEEGATWVRLGSVLVGK 226
>gi|167036133|ref|YP_001671364.1| alanine racemase domain-containing protein [Pseudomonas putida
GB-1]
gi|166862621|gb|ABZ01029.1| alanine racemase domain protein [Pseudomonas putida GB-1]
Length = 228
Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 101/226 (44%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + L +I ++A A R SV L+AVSK + IR + G F EN LQ
Sbjct: 1 MSTLADNLSAISARIASAAQAAGRDPASVQLLAVSKTKPASAIREIHTAGVRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALTKQQELSDL-PLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P L + GLM IP + +
Sbjct: 120 LNLCLQVNVSGEDSKSGCAPADLPALAKAVAGLPNLRLRGLMAIPEPTDDRAAQEAAFAH 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRQLQENLGLDLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|297588310|ref|ZP_06946953.1| YggS family pyridoxal phosphate enzyme [Finegoldia magna ATCC
53516]
gi|297573683|gb|EFH92404.1| YggS family pyridoxal phosphate enzyme [Finegoldia magna ATCC
53516]
Length = 226
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 17/232 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A ++ L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFAS----HGETPHLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + IG LQSNKV ++V +I ++ R + ++
Sbjct: 57 MSWKYDELKDCVN--YHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQ 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQ+N E QKSG+ + F+ + + V+GLM I P +P+ ++ ++
Sbjct: 115 DCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKTEFVKVKGLMSIAPFAEDPEEIRWVFKKM 174
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 175 REIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNYN 226
>gi|312171182|emb|CBX79441.1| UPF0001 protein yggS [Erwinia amylovora ATCC BAA-2158]
Length = 237
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISTAAAKCGRDPQEITLLAVSKTKPASAVEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 V-DKIQLLANPALAWHFIGPLQSNKSRLVAENFDWCHTVDRLRIASRLSQQRPDNLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQ+N E KSGIM + +L + GLM IP + + + ++
Sbjct: 122 ILIQINISAEPSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDSYESQLAVCQQMT 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFKQLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 228
>gi|56476394|ref|YP_157983.1| hypothetical protein ebA1768 [Aromatoleum aromaticum EbN1]
gi|56312437|emb|CAI07082.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 233
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ ++++ +A + R + V+L+AVSK ++ + A GQ +F EN ++E
Sbjct: 3 SISANLQAVRRRVAAAARASGRTPEDVALIAVSKTQPAQSVAEAAHAGQRLFGENYVREG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + + F + +V R K A LS + + L
Sbjct: 63 VAKAAE-LHARQLEWHFIGPLQSNKTRPVATHFHWVHSVDRLKLAERLSEQRGDELPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN G E KSG+ P + + +L + GLMCIP A G+ + F L
Sbjct: 122 VCIQVNVGGEASKSGVAPGEVPALAAAVAKLPRLALRGLMCIPEAGGDEALLRARFATLR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ L LSMGM+ D ELAIA GAT VR+G+ IFG R
Sbjct: 182 QLRDRLNDAGLALDTLSMGMSDDLELAIAEGATMVRVGTAIFGAR 226
>gi|71275400|ref|ZP_00651686.1| Protein of unknown function UPF0001 [Xylella fastidiosa Dixon]
gi|71898572|ref|ZP_00680743.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|170730375|ref|YP_001775808.1| hypothetical protein Xfasm12_1237 [Xylella fastidiosa M12]
gi|71163700|gb|EAO13416.1| Protein of unknown function UPF0001 [Xylella fastidiosa Dixon]
gi|71731696|gb|EAO33756.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|167965168|gb|ACA12178.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 261
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK VD IR++ G ENK Q+A
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 83 YHKWEAMSDLTDLHWSVIGHLQTNKAKLVARFASEFQALDSLRVAEALERRLQIEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVNT E K G+ P + FV L V GLM + G+ +++
Sbjct: 143 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLR 202
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +T+LSMGM+ D E+AI GAT+VR+G I+G R
Sbjct: 203 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATAVRVGQAIYGAR 250
>gi|326796926|ref|YP_004314746.1| hypothetical protein Marme_3700 [Marinomonas mediterranea MMB-1]
gi|326547690|gb|ADZ92910.1| protein of unknown function UPF0001 [Marinomonas mediterranea
MMB-1]
Length = 233
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L K I R +DSV+L+AVSK + I A GQ +F EN +Q
Sbjct: 1 MTQISDNLSRVKHDIHTLETRYNRIEDSVNLLAVSKTKPIEAIIEAYEAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K+ L+ + FIG +QSNK +I D + TV REK A LS +
Sbjct: 61 EAVSKYGELQNYPGIVWHFIGPIQSNKSRQIAETMDWVHTVDREKIARRLSEQRPISKPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN E KSGI ++ + V L + + GLM IP + +
Sbjct: 121 LNVLIQVNISQESSKSGIALSELGEMVDLVNSLPNIVLRGLMAIPAPQESEAAQIDVYRP 180
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + LS+GM+ D AIAS ++ VR+G+ IFG R T
Sbjct: 181 LTEAYEALVEAFLHVDTLSIGMSGDLPAAIASKSSLVRVGTSIFGARDYST 231
>gi|289523459|ref|ZP_06440313.1| pyridoxal phosphate enzyme, YggS family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503151|gb|EFD24315.1| pyridoxal phosphate enzyme, YggS family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 234
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE 60
+ L+ K++I +A R D + L+AV+K + + A G + EN++QE
Sbjct: 5 DIQKNLESVKERIAKTAESVGRMPDQIKLIAVTKNQPLEAMLQASRSGLIDGIGENRVQE 64
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK K + + IG LQ NK + LFD+I+++ A++L + + +
Sbjct: 65 AKDKKERWPSDLKLPWHMIGHLQRNKAKLAIQLFDIIQSIDNMDLAAVLEKRLAALKKNM 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
V I+VN EI K G+ P R L + GLM I P F L
Sbjct: 125 EVLIEVNISGEISKYGVDPKDVSSMAEYILRNCPSLKLVGLMGIGPLVKDREKIISSFVL 184
Query: 177 LSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + + +L +LSMGM+ DFELAI G+T VRIG IFG R
Sbjct: 185 LRRLKEKTEKDIGLQLHELSMGMSDDFELAIKEGSTMVRIGRAIFGPR 232
>gi|319764079|ref|YP_004128016.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
gi|317118640|gb|ADV01129.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
Length = 264
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A R SV L+ VSK ++R+A + G + ENK QEA KW+
Sbjct: 25 LATVQARIAAACQRAGRDPASVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEAYGKWL 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ ++ IG LQ+NK + + + + A L + + R L V++QV
Sbjct: 85 ATQDLPGLRWSVIGHLQTNKAKLVARFASEFQALDSLRVAEALERRLQAEGRALDVFVQV 144
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--------- 177
NT E K G++P + F+ L V GLM + +
Sbjct: 145 NTSGEASKYGLLPREVAAFLRALPAFPALRVRGLMTLALFSSDAARVRRCFVLLRTLRDR 204
Query: 178 --SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ DFE+AI GAT VR+G +FG R
Sbjct: 205 LRQEAPAGITLEELSMGMSGDFEIAIEEGATVVRVGQALFGAR 247
>gi|300777152|ref|ZP_07087010.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
gi|300502662|gb|EFK33802.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
Length = 246
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L ++I+ + + R D V L+ +K V +I++AL G + AENK+QE
Sbjct: 4 DILHNLAAINERIKKACEQSGRNTDDVKLLLATKTVPPDRIKIALENGYTLIAENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFL 120
K+K+ K + FIG LQ+NK+ +I+ + +++ R + A L ++ ++R +
Sbjct: 64 KEKYED-LKSIPHESHFIGHLQTNKIKDILKYDVICVQSLDRLELAEKLHQRLLAENRTM 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
V+IQVNT E K G+ P+Q + L ++GLM + F +L
Sbjct: 123 DVWIQVNTSNEESKFGVNPDQAIEITRKISNYSTLKIKGLMTIGLFSAETDKVRACFKIL 182
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ ++ +LSMGM+ D E AI GAT VR+G+ +FG R
Sbjct: 183 KNLQQDIIRENIPNVEMKELSMGMSGDLETAIEEGATIVRVGTAVFGARIYP 234
>gi|270157363|ref|ZP_06186020.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|289164243|ref|YP_003454381.1| enzyme [Legionella longbeachae NSW150]
gi|269989388|gb|EEZ95642.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|288857416|emb|CBJ11244.1| putative enzyme [Legionella longbeachae NSW150]
Length = 233
Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 114/231 (49%), Gaps = 10/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL L +Q I +A+ R + V L+AVSK KI+ A G F E+ QE
Sbjct: 1 MSLHQDLNRIQQLITQTALAYDRKPEGVLLLAVSKQQGVDKIQEAFRLGVKDFGESYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+KK L+ + FIG +QSNK I +LF I ++SR K AS L+ K L
Sbjct: 61 AQKKITALKNL-PINWHFIGPIQSNKTKGIATLFSWIHSISRLKIASQLNEYRTKDLSPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSGI P + + + L + GLM IPP + +P + + +
Sbjct: 120 NVCIQVNLIDEKSKSGIPPEHAAELALAINKLPNLKLRGLMTIPPPINDPDLQYDVFIRL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + LSMGM+ D AI +GAT VR+G IFGER +
Sbjct: 180 NQLMQQLNQTLDLNMDTLSMGMSDDLIPAIKAGATIVRVGRAIFGERQKSS 230
>gi|157692218|ref|YP_001486680.1| hypothetical protein BPUM_1437 [Bacillus pumilus SAFR-032]
gi|157680976|gb|ABV62120.1| hypothetical protein BPUM_1437 [Bacillus pumilus SAFR-032]
Length = 229
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ ++I + A R D VS+VAV+K V ++ + A G + F EN+ Q
Sbjct: 1 MNVRENLRQINEQINEACKRAGRNPDDVSVVAVTKYVSIERAQEAKEAGILHFGENRDQG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + E + FIGSLQ+ KV ++ D + ++ R A+ + + +
Sbjct: 61 LLEKQASITDES-INWHFIGSLQTRKVKSVIQTIDYLHSLDRISLANEIEKRV---DHTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ FV ++ + GLM + P + + F L
Sbjct: 117 RCFVQVNTSLEESKHGLQSEDVIPFVKQLADFKKIEIAGLMTMAPFTDDHTVIRNCFKTL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +E K LSMGM+ DFE+AI GAT VRIGS + G
Sbjct: 177 KNLQKEVKHLNQVNAPCQHLSMGMSNDFEIAIEEGATFVRIGSSLVGN 224
>gi|332702329|ref|ZP_08422417.1| protein of unknown function UPF0001 [Desulfovibrio africanus str.
Walvis Bay]
gi|332552478|gb|EGJ49522.1| protein of unknown function UPF0001 [Desulfovibrio africanus str.
Walvis Bay]
Length = 238
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ +A R V+LVAVSK ++ +R GQ+ F E+ +QEA
Sbjct: 13 LRRNLEAVLAEVNEAAAACGRKSGEVTLVAVSKFHPAQDVRALAGFGQMDFGESYVQEAL 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG LQ+NK + F ++ +V K A L V
Sbjct: 73 VKREELQDL-DLRWHFIGRLQTNKARHVAGSFSLVHSVDSLKLAQTLHKRAQALQTLQEV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E QK+G ++ + R L + GLM +PP + P +P F L E
Sbjct: 132 LLQVNLAGEGQKAGAAADEARRLAQEVRGLDSLALRGLMLLPPMVDEPEQARPWFAALRE 191
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +L LSMGMT DF AIA GAT VRIG+ IFGER
Sbjct: 192 LRDSLERELGVRLPHLSMGMTGDFRQAIAEGATIVRIGTRIFGERAY 238
>gi|120609338|ref|YP_969016.1| alanine racemase domain-containing protein [Acidovorax citrulli
AAC00-1]
gi|120587802|gb|ABM31242.1| alanine racemase domain protein [Acidovorax citrulli AAC00-1]
Length = 241
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 75/237 (31%), Positives = 104/237 (43%), Gaps = 17/237 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++GN LQ +I + A R V L+AVSK + +R A GQ F EN +QE
Sbjct: 3 TIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQEG 62
Query: 62 KKK-----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKIAALGQPESGLAHPLEWHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRPDH 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQVN K+G+ P++ + + +L + GLM IP P
Sbjct: 123 LPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPRLRLRGLMAIPEPAPDFAAQFAV 182
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LS+GMT D E AI +G+T VR+GSGIFG R
Sbjct: 183 HAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSYP 239
>gi|156932607|ref|YP_001436523.1| hypothetical protein ESA_00389 [Cronobacter sakazakii ATCC BAA-894]
gi|156530861|gb|ABU75687.1| hypothetical protein ESA_00389 [Cronobacter sakazakii ATCC BAA-894]
Length = 235
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +QKI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MSETERNLTQVRQKISAAAQRCGRAPEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQ 60
Query: 60 EAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E +K + R + FIG LQSNK + FD TV R + A+ L+ + +
Sbjct: 61 EGVEKILHFRDAGVDGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEM 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQVN E KSGI ++ +L + GLM IP F +
Sbjct: 121 TPLNVLIQVNISDEQSKSGIALSELDALAEQIAALPRLRLRGLMAIPAPEKEYARQFAVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 CEMAAAFTALKARYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|302338974|ref|YP_003804180.1| alanine racemase domain protein [Spirochaeta smaragdinae DSM 11293]
gi|301636159|gb|ADK81586.1| alanine racemase domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 234
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 14/231 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M + + + +I +A A R + L+AV+K + + A G +F EN++
Sbjct: 4 MDGMIAGNIARIQDEIAEAAHKAGRDPGDIQLMAVTKTHPFEDVLAAYQAGIRLFGENRV 63
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA K+ L D++L IG LQSNKV +IV +E++ + TA L+ +
Sbjct: 64 QEAVGKYT-LPLPADMKLHMIGHLQSNKVKQIVPFVQCVESIDKVATAEELNKRAQVSGK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPKPH---F 174
+ + +VNT E+ K+G + + L V GLM I P G+ F
Sbjct: 123 SIDIMFEVNTSGEVSKNGFSEYEELSDALGAVLELAALRVTGLMTIGPLGGDEGQIRNAF 182
Query: 175 YLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL ++ +L +LSMGM+ DF +A+A GAT VR+G+ IFG R
Sbjct: 183 ILLRSMSDRLSTEYPQVELRELSMGMSGDFPIAVAEGATIVRVGTAIFGRR 233
>gi|256821443|ref|YP_003145406.1| alanine racemase domain-containing protein [Kangiella koreensis DSM
16069]
gi|256794982|gb|ACV25638.1| alanine racemase domain protein [Kangiella koreensis DSM 16069]
Length = 227
Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L + +I + + K +V VAVSK + IR A + G F EN++Q
Sbjct: 1 MSRIASHLADLQLQIVKTCAKRRIFKHNVLFVAVSKRHPADSIREAYAAGHRDFGENQVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ IG +QS K +I FD +++V R K A L+ +
Sbjct: 61 EALDKISQLSDL-NINWHMIGVIQSRKCKDIAQHFDWVQSVDRLKVAQKLNQHREQDQSP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN E QK+G+ + K Q +L + GLM +PP +P+ F
Sbjct: 120 LNVLIQVNLFGESQKAGVNAAECKKLAHEIMQLPRLKLRGLMALPPKQTDPQTQFQQFER 179
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I A +L LSMGM+ D+E AI +G+T +R+G+ IFGER
Sbjct: 180 IHSVYQELQAEYPQLDTLSMGMSGDYEPAILAGSTMIRLGTAIFGERD 227
>gi|255319900|ref|ZP_05361101.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
radioresistens SK82]
gi|255303033|gb|EET82249.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
radioresistens SK82]
Length = 231
Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 106/230 (46%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I ++ A R ++V L+AVSK + +R GQ F EN LQ
Sbjct: 1 MNKLQDARDQVLAQIREASHKAGRADETVQLLAVSKTHSAGVLREMYQAGQRSFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ D++ FIG +Q NK + FD + V R A LS + +Q
Sbjct: 61 EALEKIHSLQDLNDIEWHFIGHVQRNKTKLLAENFDWVHGVDRLIIAERLSAQRPEQRAA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN + K G P Q + V + Q L + GLM IP +
Sbjct: 121 LNICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCLRGLMVIPAPGHTDAFEHT--RQ 178
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGM+ D E A+ +G+T VRIG+ +FG R
Sbjct: 179 LFNQVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIGTALFGTRDYS 228
>gi|262373214|ref|ZP_06066493.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262313239|gb|EEY94324.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 233
Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+IE + + +R ++V L+AVSK S +R + GQ F EN LQEA K L
Sbjct: 15 QVLSQIEQACLRVQRDPNTVQLLAVSKTHPSLSLREMYAVGQRSFGENYLQEALPKIEEL 74
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ D++ FIG +Q NK + FD + V R A LS + ++ + L + +QVN
Sbjct: 75 QDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSSQRLETQKLLNICLQVNI 133
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--- 185
+ K G PN+ + V + L + GLM IP + + K
Sbjct: 134 DGQDSKDGCEPNEVAELVEQISRLPNLRLRGLMVIPAPNNVAAFADA--KNLFDQVKSLH 191
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LSMGM+ D + AIA+G+T VR+G+ +FG R
Sbjct: 192 AQPQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGARDYS 232
>gi|256819743|ref|YP_003141022.1| alanine racemase domain-containing protein [Capnocytophaga ochracea
DSM 7271]
gi|256581326|gb|ACU92461.1| alanine racemase domain protein [Capnocytophaga ochracea DSM 7271]
Length = 241
Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +Q+I N+ R + V L+ +K V ++I+VAL+ G + AENK+QE
Sbjct: 3 NILQNIALVQQRIANTCERVGRKPEEVKLLLATKTVTPERIKVALNAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ +I+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDTPHTN-HFIGHLQTNKIKDILRYEVSCVESVDRLDLAQKLHNRLESEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLL 177
++IQVNT E K G P++ + V L+++GLM + F LL
Sbjct: 122 DIFIQVNTSNEESKFGADPSEVLNLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFKLL 181
Query: 178 SEIARE---CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E L +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KHLQQEIIALNLPNVDPRELSMGMSGDLETAIEEGATIVRVGTAIFGKRIYP 233
>gi|50084121|ref|YP_045631.1| hypothetical protein ACIAD0913 [Acinetobacter sp. ADP1]
gi|49530097|emb|CAG67809.1| conserved hypothetical protein; putative enzyme [Acinetobacter sp.
ADP1]
Length = 234
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 102/229 (44%), Gaps = 12/229 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +I+ + A+R +V L+AVSK +R GQ F EN LQ
Sbjct: 6 MNHFKDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L D++ FIG +Q NK + FD + V R A LS + ++
Sbjct: 66 EALDKIEALDDL-DIEWHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQTQPP 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN ++ K G P V Q Q+ + G+M IP +
Sbjct: 125 LNLCIQVNIDHQDSKDGCQPEDVAQLVEEISQLPQVRLRGIMVIPAPDQITAFTDA--KQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K LSMGM+ D + AIA+GA+ VRIG+ +FG R
Sbjct: 183 LFEQVKSHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDY 231
>gi|17547402|ref|NP_520804.1| hypothetical protein RSc2683 [Ralstonia solanacearum GMI1000]
gi|17429705|emb|CAD16390.1| putative ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum GMI1000]
Length = 240
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGTAKTSALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGN---P 170
L V +++N + K G+ P+ + + +L + GLM +P +
Sbjct: 121 TLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPRLRLRGLMAVPEPADDPAAR 180
Query: 171 KPHFYLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L ++A + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|330810813|ref|YP_004355275.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327378921|gb|AEA70271.1| Putative alanine racemase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 273
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +Q+I ++ R SV L+ VSK D +R+A G + ENK+QEA++K
Sbjct: 31 NLAAVQQRISSACQRVGRDPASVRLLPVSKTFDEAHLRLAYVAGCRLLGENKVQEAQRKR 90
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+Q IG LQ+NKV ++ + + + A L + + R + V++Q
Sbjct: 91 EAMADLTDLQWSIIGHLQTNKVKQVARFASEFQALDSLRVAEALDRRLQVEGRRMDVFVQ 150
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE-- 183
VNT E+ K G+ P F+ L V GLM + + +
Sbjct: 151 VNTSGEVSKYGLPPEAVAAFLRALPAFSTLRVRGLMTLALFSADVARVRPCFVRLRELRE 210
Query: 184 ---------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 211 RLRQDAPVGIGLEELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 254
>gi|253689812|ref|YP_003019002.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756390|gb|ACT14466.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 237
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 105/230 (45%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +Q
Sbjct: 3 TIQQNLQDIRQQIATAAAHCARAPEDITLLAVSKTKPVSAIEEAIAAGQQAFGENYVQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E + + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPATLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V +Q+N E KSGIM ++ + L + GLM IP F
Sbjct: 123 PLNVLLQINISGEPSKSGIMVDELAELAAGVAALPNLRLRGLMAIPAPETDYEQQLVVFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAALFQTLSATYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDY 232
>gi|118472564|ref|YP_886394.1| hypothetical protein MSMEG_2032 [Mycobacterium smegmatis str. MC2
155]
gi|118173851|gb|ABK74747.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 252
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ +I + A R V L+ VSK VD ++RVA + G +F ENK+QEA +KW
Sbjct: 21 NLQAVNTRIGAALQRAGREPGEVRLLPVSKTVDEDRLRVAAAAGCTMFGENKVQEAMRKW 80
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ DV+ IG LQ+NK ++ + + + A+ L + R L VY+Q
Sbjct: 81 R-NLSDLDVEWSVIGHLQTNKAKDVAEFAAEFQALDNPRAAAALDRRLQALGRQLDVYVQ 139
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P+ F+ L V GLM I +P +P F LL +
Sbjct: 140 VNTSGEESKYGLAPDDVIPFLKTLPAYTALRVRGLMTIAVFSTDPERVRPCFRLLRSLRD 199
Query: 183 ECK-LT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L +LSMGM+ D+ELAIA G+T VR+G IFG RP
Sbjct: 200 QARDLDLIGPGELSMGMSGDYELAIAEGSTCVRVGQAIFGARPTP 244
>gi|114769843|ref|ZP_01447453.1| alanine racemase domain protein [alpha proteobacterium HTCC2255]
gi|114549548|gb|EAU52430.1| alanine racemase domain protein [alpha proteobacterium HTCC2255]
Length = 217
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 98/222 (44%), Positives = 129/222 (58%), Gaps = 6/222 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L K +IEN+ A K S L+AVSK+ + K+ L+ G +F ENK+QE
Sbjct: 1 MS----LHSIKFRIENAEKSAGVIKGSTQLLAVSKVQPNSKVLNVLNQGHNLFGENKVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ KW R+ + D ++ IG LQSNKV + V LF+ I T+ R K A LS E+ Q +
Sbjct: 57 SFGKWPMFRESFPDAEVHLIGPLQSNKVKQAVELFNAIHTLDRLKLAQKLSNEIQSQGKA 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQ+N+G E QKSGI+P+ F+ + L ++GLM IPP P HF LL
Sbjct: 117 PDMFIQINSGEEDQKSGIIPSDADKFI-ADCRSLDLPIKGLMVIPPVNDEPSLHFGLLRA 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
IA L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAHRNGLAGLSMGMSNDFESAIAMGATHVRVGSAIFGERDYS 217
>gi|291287269|ref|YP_003504085.1| alanine racemase domain protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884429|gb|ADD68129.1| alanine racemase domain protein [Denitrovibrio acetiphilus DSM
12809]
Length = 229
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQEAK 62
++L+ + +E + + R V++VAVSK + I A G I+ EN++QEA
Sbjct: 3 KDRLENIIKDVEEAKKRSGRT-HDVTIVAVSKRFPLEDIENAYDTTGHTIYGENRIQEAL 61
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ DVQ+ FIG +Q+NKV + + F +I +V EK A + K+ R
Sbjct: 62 DKSASLMKTRPDVQVHFIGHIQTNKVKYLKNNFALIHSVDSEKLAEFMQKHFEKEDRVQD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLS 178
V +QVN ++ KSG R L++ GLM +PP + + + + +
Sbjct: 122 VLVQVNIAHDENKSGTGEEDAFQLCDFIRSCPNLHLRGLMMMPPLVDDVEDNRCYFTRMK 181
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +C + LSMGM+ D+++A+ G+T VR+G+ +FG R
Sbjct: 182 KMFDKCNDIKGYNIDTLSMGMSGDYQVAVEEGSTMVRVGTALFGHRQY 229
>gi|220931765|ref|YP_002508673.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
168]
gi|219993075|gb|ACL69678.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
168]
Length = 230
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L+ ++I+++ + R D V L+ VSK +KI+ G IF E+++QE
Sbjct: 5 DLQTRLEEINKRIDDATRRSGRK-DKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF 119
++K V+ FIG LQ NKV ++ + + I ++ + A + K +R
Sbjct: 64 REKDEK---LDGVEWHFIGHLQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRK 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+PV +QVN + K GI P++ KDFV + + VEGLM I P NP+ +
Sbjct: 121 IPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEGLMTIVPYSENPEEARPYFKQ 180
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + +LSMGM+ DFE+AI GAT +RIG+ +FGER
Sbjct: 181 MNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGERVYN 230
>gi|163796485|ref|ZP_02190445.1| hypothetical protein BAL199_10997 [alpha proteobacterium BAL199]
gi|159178335|gb|EDP62879.1| hypothetical protein BAL199_10997 [alpha proteobacterium BAL199]
Length = 227
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 93/195 (47%), Positives = 128/195 (65%), Gaps = 1/195 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSN 85
V+L+AV K+ +++ AL+ GQ +F EN++QEA+ KW + DV+L IG LQ+N
Sbjct: 32 EVTLIAVGKVQPVERVEAALAAGQRVFGENRVQEAQGKWPALRERYPDVELHLIGPLQTN 91
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + V LFD I+TV R K A+ L+ EM KQ R L YIQ+NTG E QK+G++P F
Sbjct: 92 KVKDAVVLFDAIQTVDRPKLAAELAREMAKQGRRLDCYIQINTGEEDQKAGVLPADADAF 151
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ CRQ++ L + GLMCIPP +P HF +L EIA+ L+ LSMGM+ D+E A+ GA
Sbjct: 152 IDSCRQEHGLPIVGLMCIPPVADDPALHFAMLREIAKRHGLSGLSMGMSGDYETAVQLGA 211
Query: 206 TSVRIGSGIFGERPC 220
T VR+G+ IFG R
Sbjct: 212 THVRVGTAIFGARDY 226
>gi|330823646|ref|YP_004386949.1| hypothetical protein Alide2_1026 [Alicycliphilus denitrificans
K601]
gi|329309018|gb|AEB83433.1| protein of unknown function UPF0001 [Alicycliphilus denitrificans
K601]
Length = 264
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A R SV L+ VSK ++R+A + G + ENK QEA KW
Sbjct: 25 LATVQARIAAACQRAGRDPASVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEALGKWQ 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ ++ IG LQ+NK + + + + A L + + R L V++QV
Sbjct: 85 ATQDLPGLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALERRLQAEGRALDVFVQV 144
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--------- 177
NT E K G++P + F+ L V GLM + +
Sbjct: 145 NTSGEASKYGLLPREVAAFLRALPAFPALRVRGLMTLALFSSDAARVRRCFVLLRTLRDR 204
Query: 178 --SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ DFE+AI GAT VR+G +FG R
Sbjct: 205 LRQEAPAGITLEELSMGMSGDFEIAIEEGATVVRVGQALFGAR 247
>gi|270263058|ref|ZP_06191328.1| hypothetical protein SOD_d00730 [Serratia odorifera 4Rx13]
gi|270042746|gb|EFA15840.1| hypothetical protein SOD_d00730 [Serratia odorifera 4Rx13]
Length = 235
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 104/233 (44%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ + +I +A R + ++L+AVSK I A++ GQ F EN +Q
Sbjct: 1 MSTIQQNLQDVRSRIATAAQGCARAPEEITLLAVSKTKPVAAIAEAIAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
E K + + FIG LQSNK + F TV R + A LS +
Sbjct: 61 EGVDKVQHFATQPEGATLDWHFIGPLQSNKSRLVAEHFAWCHTVDRLRIAQRLSDQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ+N E KSGI+ + L + GLM IP + + +
Sbjct: 121 MPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPEEDYQRQLAV 180
Query: 177 LSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++ ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FGQMSDAFLALQQHYPQVDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGARDYS 233
>gi|220903651|ref|YP_002478963.1| alanine racemase domain-containing protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219867950|gb|ACL48285.1| alanine racemase domain protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 237
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 15/237 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ ++++ + A RP++ VSLVAVSK+ + + + GQV F EN +QE
Sbjct: 1 MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQE 60
Query: 61 AKKKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A +K L V+ +G +QS K ++ F ++ T+ K A +
Sbjct: 61 ALQKREELEAAPAASALHVRWHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLAD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PK 171
V QVN E QKSGIM L+V+GLMC+PP + +
Sbjct: 121 GEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPHLDVQGLMCLPPVFDSGDAAR 180
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
PHF LL E+ + L LSMGM+ DFE A+ GAT VRIG+ IFG RP +T
Sbjct: 181 PHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT 237
>gi|253572881|ref|ZP_04850279.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298386606|ref|ZP_06996162.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 1_1_14]
gi|251837513|gb|EES65606.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298260983|gb|EFI03851.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 1_1_14]
Length = 222
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ ++ +I + K + ++ + K R +
Sbjct: 51 MTAKYE--TLPKDIEWHFIGHLQTNKIKYMIPYVAMIHGIDTYKLLTEVNKQAAKAGRIV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
+Q++ E K G P + KD + ++ + + GLM + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKDMLHAGEWKELSHVRICGLMGMASNTDDVEQINREFC 168
Query: 176 LLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL+ + +E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLNRLFQEIKANWFADSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|312129821|ref|YP_003997161.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311906367|gb|ADQ16808.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 244
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + V +++I N+ + R D V L+ +K V +++I++AL G + AENK+QE K
Sbjct: 5 ILRNMAVIQERINNACKESNRNPDEVKLLLATKTVPAERIKIALQAGHTLIAENKVQELK 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ L+ FIG LQ+NK+ E++ I+++ R A L + + + +
Sbjct: 65 EKYEALKGVSHTN-HFIGHLQTNKIKEVLKYDVSCIQSLDRIDLAEKLQQRLEYEDKTID 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLLS 178
V +QVNT E K G+ P+ V + +L ++GLM + F LL
Sbjct: 124 VLVQVNTSNEESKFGVHPDNAIALVQQIARLDRLKIKGLMTIGLFSAETEKVRQCFKLLK 183
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I +E ++ +LSMGM+ D E AI GAT +R+G+ IFG+R
Sbjct: 184 NIQQEIIALNIPDIQMKELSMGMSGDLETAIEEGATIIRVGTAIFGQRIYP 234
>gi|300690501|ref|YP_003751496.1| hypothetical protein RPSI07_0829 [Ralstonia solanacearum PSI07]
gi|299077561|emb|CBJ50189.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
PSI07]
Length = 240
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/235 (34%), Positives = 115/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSAIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGLAKINALADLRNGPKAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTK--DFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
L V +++N + K G+ P+ + +L + GLM +P G+P
Sbjct: 121 TLPPLQVCLEINISRQASKHGVPPDLNEVLALARAVAALPRLQLRGLMAVPEPAGDPATR 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L ++A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRDLADRLRETGLPVDTLSMGMSVDLEDAIAQGATIVRVGSAIFGARQY 235
>gi|170756777|ref|YP_001781103.1| hypothetical protein CLD_3085 [Clostridium botulinum B1 str. Okra]
gi|169121989|gb|ACA45825.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum B1
str. Okra]
Length = 223
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEHFKEKKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V IQ+N G E K GI ++ + + + +GLM I P +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEDLENMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMK 170
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|74316686|ref|YP_314426.1| hypothetical protein Tbd_0668 [Thiobacillus denitrificans ATCC
25259]
gi|74056181|gb|AAZ96621.1| Protein of unknown function UPF0001 [Thiobacillus denitrificans
ATCC 25259]
Length = 236
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 96/228 (42%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ +A+ R +V+L+AVSK D +R G F EN LQEA
Sbjct: 4 TIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYLQEA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +Q NK + F V R A LS + + L
Sbjct: 64 LDKQRALADL-DLVWHFIGPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
V ++VN E K G+ + +L + GLM IP +
Sbjct: 123 VCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRGLMAIPAPTRDRACQRAAFARVR 182
Query: 179 EIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ DFE AIA GAT VRIG+ IFG R
Sbjct: 183 RLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPRFYP 230
>gi|330812364|ref|YP_004356826.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380472|gb|AEA71822.1| putative alanine racemase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 228
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 104/226 (46%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + +I + A+R + SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIADNIAQVSSRIRAAEQAAQRAEHSVKLLAVSKTKPVQALREAYAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALGKQLELTDL-PLIWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIAQRLSEQRPADLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP + +
Sbjct: 120 LNICIQVNVSGEASKSGCTPADLSALANAISALPRLKLRGLMAIPEPTEDRAAQDAAFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ R L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VERLQASLALPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDY 225
>gi|257457757|ref|ZP_05622918.1| pyridoxal phosphate enzyme, YggS family [Treponema vincentii ATCC
35580]
gi|257444807|gb|EEV19889.1| pyridoxal phosphate enzyme, YggS family [Treponema vincentii ATCC
35580]
Length = 240
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ +I + A R V L+ +K V+ ++I A SCG + ENK+QE
Sbjct: 4 TIQENIRHIMGRINTACKKAGRDPKEVQLLLATKTVEPERILQAFSCGCTLIGENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ FIG LQSNK+ E++ I+++ TA L + ++ R +
Sbjct: 64 HDKYEA-LSAVPHTAHFIGHLQSNKIKEVIRYVQCIQSIDNLDTAQKLEQRLAQEGRSIE 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVNT E K G P ++ V LN+ G M I G +
Sbjct: 123 ILVQVNTSAEESKFGCKPGDAENLVKAIAALPHLNIRGFMTIGLFSGEEDKVRACFRCLK 182
Query: 182 R------ECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E KL LSMGM+ D E+AI G+T +RIG+ +FGER
Sbjct: 183 HVQKQVAEMKLPNVSTDVLSMGMSGDLEIAIEEGSTMLRIGTAVFGERHYP 233
>gi|317495980|ref|ZP_07954342.1| alanine racemase domain-containing protein [Gemella moribillum
M424]
gi|316913884|gb|EFV35368.1| alanine racemase domain-containing protein [Gemella moribillum
M424]
Length = 225
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N L+ I+N + R + ++L+AV+K V ++++ A G FAEN+
Sbjct: 1 MNVKNNLEKINNDIKNICQKSGRNFEDITLIAVTKYVGDERVKEAQEAGVHDFAENRAVN 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++ + IGSLQ+ KV + ++ D + RE A + + +
Sbjct: 61 YIERKEKFL---EATWHLIGSLQTRKVRDAINKVDYFHALDRESLAVEIE---KRAEHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G++P +FV + ++ V GLM + P + + + F L
Sbjct: 115 NCFVQVNTSGEESKHGLIPEAVLEFVKGLEKYPKIRVVGLMTMAPFLEDEATLRSCFRKL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ E K LSMGM+ D+E+AI GAT +RIG+ + G
Sbjct: 175 RELRDEIKGLCLEYAPCKFLSMGMSNDYEIAIEEGATHIRIGTALVGN 222
>gi|260881737|ref|ZP_05405125.2| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
20544]
gi|260848290|gb|EEX68297.1| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
20544]
Length = 230
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +Q I+ + R V LVAV+K D + +R A+ G EN++QE
Sbjct: 2 IAENLHQVEQHIKEAMARRTRVPKDAPVKLVAVTKNHDVEAMREAIDAGATDIGENRIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK K+ + DV IG LQ+NK + V F +I +V E A L E K +
Sbjct: 62 AKSKFD--ILDRDVTWHLIGHLQTNKAKQAVKYFSLIHSVDSEHLARALDKEAGKIGKCQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QVN E KSGI + + L L + GLMCI P +P F+ +
Sbjct: 120 DVLVQVNLAKEDSKSGIYKEDLRPLLDLVDALPNLRLRGLMCIAPNYADVEACRPLFHEM 179
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI ++ K ++ LSMGMT D+++A+ GA VR+G+ IFG R
Sbjct: 180 YEIFQQVKEIPFKTANISYLSMGMTHDYQIAVEEGANIVRVGTAIFGPRQY 230
>gi|154497036|ref|ZP_02035732.1| hypothetical protein BACCAP_01329 [Bacteroides capillosus ATCC
29799]
gi|150273435|gb|EDN00563.1| hypothetical protein BACCAP_01329 [Bacteroides capillosus ATCC
29799]
Length = 238
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +++ K++I +A+ R V+LVA +K+ S IR A++ G + EN++QE
Sbjct: 1 MTLPERVEAVKREIAAAALEVGREAAEVTLVAATKVQTSDTIRQAIAAGITVCGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
L FIG LQ+NKV +V D+IE++ + + + K
Sbjct: 61 MTAHLDDDAYA-GAALHFIGHLQTNKVKYVVGRVDMIESIDSRRLLEAVEAQAAKLDLVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +++N G E KSG P + + L + + + GLM IPP P + + +E+
Sbjct: 120 DILLEINVGGEESKSGAEPEEALELARLAAELPHIRLRGLMAIPPVATVPGGNRHFFAEM 179
Query: 181 AREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+E A+ GAT VR+G+ +FG RP
Sbjct: 180 YHLYVDIRTALDHNGTDMDCLSMGMSGDYEDAVREGATHVRVGTALFGPRPP 231
>gi|317049428|ref|YP_004117076.1| alanine racemase domain-containing protein [Pantoea sp. At-9b]
gi|316951045|gb|ADU70520.1| alanine racemase domain protein [Pantoea sp. At-9b]
Length = 235
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R + ++L+AVSK + A++ GQ F EN +QE
Sbjct: 3 SIEHNLQQVRERIAAAAARCGRAPEEITLLAVSKTKPVSAVEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+Q FIG LQSNK + F TV R++ A L+ + L
Sbjct: 63 VEKVTTLAAHPDLQWHFIGPLQSNKSRLVAEHFGWCHTVDRQRIAQRLNDQRPAHLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM QL + GLM IP + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEALPALAQEISALPQLCLRGLMAIPAPEQDYDRQLAVCQQMA 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D E AIA+G+T VRIG+ +FG R
Sbjct: 183 AAFRALQQDYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAVFGARDY 229
>gi|227112106|ref|ZP_03825762.1| putative alanine racemase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 270
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/215 (32%), Positives = 100/215 (46%), Gaps = 11/215 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
R +V L+ VSK ++R+A + G I ENK+QEA +KW ++ D+Q
Sbjct: 41 CQRVGRDPATVRLLPVSKTKPENRLRMAHAAGCRILGENKVQEAFRKWEAMQDLTDLQWS 100
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ+NK + + + + A L + + R L V++QVNT E K G+
Sbjct: 101 VIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQIEGRSLDVFVQVNTSGEASKYGL 160
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK--------L 186
P F+ L V GLM + + F L ++ + L
Sbjct: 161 SPEDVPAFIQALPAFSALRVRGLMTLALFSSDAERVRQCFIRLRQLRDRLQQNLPVGIAL 220
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 221 DELSMGMSGDFEIAIEEGATVVRVGQAIFGARPLP 255
>gi|283788527|ref|YP_003368392.1| amino acid racemase [Citrobacter rodentium ICC168]
gi|282951981|emb|CBG91708.1| putative amino acid racemase [Citrobacter rodentium ICC168]
Length = 234
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHSLAQIRDKISAAASHCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + + +Q FIG LQSNK + FD T+ R + A+ LS + Q
Sbjct: 61 EGVEKIRHFQEKGSEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAQL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + L + GLM IP + F +
Sbjct: 121 PPLNVLIQINISDENSKSGIALAELEQLAEEVAALPNLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFAGLKTRYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARNY 231
>gi|262379205|ref|ZP_06072361.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262298662|gb|EEY86575.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 236
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 106/230 (46%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I ++ A R ++V L+AVSK + +R GQ F EN LQ
Sbjct: 6 MNKLQDARDQVLAQIREASHKAGRADETVQLLAVSKTHSAGVLREMYQAGQRSFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ D++ FIG +Q NK + FD + V R A LS + +Q
Sbjct: 66 EALEKIHSLQDLNDIEWHFIGHVQRNKTKLLAENFDWVHGVDRLIIAERLSAQRPEQRAA 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN + K G P Q + V + Q L + GLM IP +
Sbjct: 126 LNICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCLRGLMVIPAPGHTDAFEHT--RQ 183
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGM+ D E A+ +G+T VRIG+ +FG R
Sbjct: 184 LFNQVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIGTALFGTRDYS 233
>gi|15838318|ref|NP_299006.1| hypothetical protein XF1717 [Xylella fastidiosa 9a5c]
gi|9106783|gb|AAF84526.1|AE003995_8 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 266
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 101/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK VD IR++ G ENK Q+A
Sbjct: 28 DIRSNLTKVYSRIIAACQRVDRHPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDA 87
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 88 YHKWEAMSDLTDLHWSVIGHLQTNKAKLVARFASEFQALDSLRVAEALERRLQIEGRSLD 147
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVNT E K G+ P + FV L V GLM + G+ +++
Sbjct: 148 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLR 207
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 208 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 255
>gi|239909251|ref|YP_002955993.1| hypothetical protein DMR_46160 [Desulfovibrio magneticus RS-1]
gi|239799118|dbj|BAH78107.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 229
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L ++I + R +V+LVAVSK D+ + + GQ IF E+ +QEA
Sbjct: 7 KTRLTGVLERIGAACRACGRDPSAVTLVAVSKFHDASAVAELAAWGQTIFGESYIQEALP 66
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + FIG LQ NK V FD+I TV + A +L Q V
Sbjct: 67 KIEAAPA--GLSWHFIGHLQRNKAKLAVGRFDLIHTVDNVELAHILQKRAAAQQLTQAVC 124
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E QKSG+ P L ++GLM IPP +P +P F L E+
Sbjct: 125 LQVNVAGEAQKSGMAPGGLDALAEAVAACPNLRLDGLMVIPPVFDDPEGARPAFARLREL 184
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 185 RDALASRLGRPLPVLSMGMSGDLEAAVTEGATHVRVGTDLFGPR 228
>gi|332519634|ref|ZP_08396098.1| alanine racemase domain protein [Lacinutrix algicola 5H-3-7-4]
gi|332044193|gb|EGI80387.1| alanine racemase domain protein [Lacinutrix algicola 5H-3-7-4]
Length = 222
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 25/234 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N L + KQ + + V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MNIQNNLNIIKQSL----------PEQVTLVAVSKTKPVSDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + K D+ IG +Q NKV + +I V K ++ + IK R +
Sbjct: 51 MAEKHEQMPK--DITWHMIGHVQRNKVKYMAPFVSLIHGVESFKLLKEINKQAIKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ +N+ G+M + N
Sbjct: 109 DCLLQIKIAEEDSKFGMSTQEASDILQSEDFSTLKNINITGVMGMATFTDNQLQIKKEFK 168
Query: 179 EIA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + C L +SMGM+ D++LAI G+T VRIGS IFG R
Sbjct: 169 LLKTVFEELKLLNSKNCNLKTISMGMSGDYKLAIDCGSTMVRIGSSIFGARNYN 222
>gi|308188044|ref|YP_003932175.1| UPF0001 protein yggS [Pantoea vagans C9-1]
gi|308058554|gb|ADO10726.1| UPF0001 protein yggS [Pantoea vagans C9-1]
Length = 235
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQQNLQQVRQRIAAAAARCGRAPEEITLLAVSKTKPASAVEEAFAAGQIAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L ++ FIG LQSNK + F T+ R++ A L+ + L
Sbjct: 63 VEKVQALAAHPELAWHFIGPLQSNKSRLVAKHFAWCHTIDRQRIAQRLNDQRPASLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V IQVN E KSGIM QL + GLM IP A + + ++
Sbjct: 123 VLIQVNISDENSKSGIMLEAVSGLAEQIAALPQLRLRGLMAIPAAESDYQRQLAVCQQMA 182
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E R+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 EAFRQLQQHYPQADTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 229
>gi|146312996|ref|YP_001178070.1| alanine racemase domain-containing protein [Enterobacter sp. 638]
gi|145319872|gb|ABP62019.1| alanine racemase domain protein [Enterobacter sp. 638]
Length = 233
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L ++KI +A R + VSL+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVREKISAAATRCGRASEDVSLLAVSKTKPASAIAEAIAAGQREFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + +Q FIG LQSNK + FD TV R + A+ L+ +
Sbjct: 61 EGVDKIRHFQETGMMGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPADK 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + L + GLM IP + F +
Sbjct: 121 APLNVLIQINISDENSKSGIALAELDALAAQVAELPGLRLRGLMAIPAPKTEYERQFAVA 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 QQMAVAFEALKARYVTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|170760427|ref|YP_001786888.1| hypothetical protein CLK_0946 [Clostridium botulinum A3 str. Loch
Maree]
gi|169407416|gb|ACA55827.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A3
str. Loch Maree]
Length = 223
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEYFKEKEDIRWHLIGHLQRNKVKYIVGKVHLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V IQ+N G E K GI ++ + + + +GLM I P +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEDLENMIDAIEKCENVKAKGLMTIIPKGSNEECAKYFRQMK 170
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|153808274|ref|ZP_01960942.1| hypothetical protein BACCAC_02562 [Bacteroides caccae ATCC 43185]
gi|149129177|gb|EDM20393.1| hypothetical protein BACCAC_02562 [Bacteroides caccae ATCC 43185]
Length = 222
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIAENLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQSNK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQSNKIKYMIPYVAMIHGIDTYKLLAEVNKQAVKAGRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
+Q++ E K G P++ KD ++ + + GLM + N + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPDECKDMLNTGEWKELTHVRICGLMGMASNTDNVEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL + +E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLDRLFKEIKTTWFADSDAFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|168025677|ref|XP_001765360.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683413|gb|EDQ69823.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q++ ++ A RP V LVAVSK + ++ G F EN +QE K
Sbjct: 11 QALRNVMQRVSQASERANRPASQVRLVAVSKTKPVELVQEVYDAGHRHFGENYVQELIDK 70
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFL 120
D++ FIG LQSNK +++ + V + + + L
Sbjct: 71 APQ--LPQDIKWHFIGHLQSNKAKALITSVPNLYMVEGVDSQKVANHLNRAVSGLGRPPL 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V +QVNT E KSG+ P++ L + L GLM I + F+
Sbjct: 129 SVLVQVNTSREESKSGVNPSECVDLAKHLKEECPNLRFSGLMTIGMLGYSSTAEFFKTLV 188
Query: 178 ---SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ +E ++ +LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 189 NCREKVCKELEIPVEECELSMGMSGDFELAIEMGSTNVRVGSTIFGARSYP 239
>gi|153940535|ref|YP_001390813.1| hypothetical protein CLI_1549 [Clostridium botulinum F str.
Langeland]
gi|168180123|ref|ZP_02614787.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum
NCTC 2916]
gi|226948801|ref|YP_002803892.1| hypothetical protein TIGR00044 [Clostridium botulinum A2 str.
Kyoto]
gi|152936431|gb|ABS41929.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum F
str. Langeland]
gi|182669171|gb|EDT81147.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum
NCTC 2916]
gi|226841352|gb|ACO84018.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A2
str. Kyoto]
gi|295318882|gb|ADF99259.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum F
str. 230613]
gi|322805782|emb|CBZ03347.1| hypothetical protein YggS, proline synthase co-transcribed
bacterial homolog PROSC [Clostridium botulinum H04402
065]
Length = 223
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEYFKEKKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V IQ+N G E K GI + + + + +GLM I P +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEDLGNMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMK 170
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|284050438|ref|ZP_06380648.1| hypothetical protein AplaP_03077 [Arthrospira platensis str.
Paraca]
gi|291569699|dbj|BAI91971.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 223
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + I V LVAV+K V +R+A G F EN++QEA
Sbjct: 4 SIAERIAQIRAAI----------PPEVRLVAVTKTVSVSAMRLAYEAGVRDFGENRVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L+ D+ IG LQSNK + ++ FD I +V K A L +QSR
Sbjct: 54 EAKQSQLQDLTDINWHLIGHLQSNKAATAIAHFDWIHSVDSLKLAQRLDRLATEQSRCPR 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QV + K G + + LN++GLM IPP + +
Sbjct: 114 ICLQVKILPDPNKYGWTVPELLADLPQLNVCESLNIQGLMTIPPQGLTENETRSVFEQTR 173
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ K+ +LSMGM+ D+ LA+ +GAT +R G IFG R
Sbjct: 174 QLAAQIEGQNWSNIKMQELSMGMSGDYLLAVEAGATMIRPGQTIFGPRN 222
>gi|329890839|ref|ZP_08269182.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
gi|328846140|gb|EGF95704.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
Length = 253
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + ++I + RP DSV L+ ++K V ++ +R+A + G F ENKLQEA+
Sbjct: 20 AANLALVHRRIAAACEQVGRPIDSVRLLPITKTVPAEILRLAWAAGVTDFGENKLQEARD 79
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + ++ +G LQSNKV + L D + K A +L+ + R + VY
Sbjct: 80 KAEAMADL-PMRWHVVGHLQSNKVKYLTRLADEFHALDSLKLAEVLNKRLETDGRDMKVY 138
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P+ DF+ +L +GLM + + +P F LL +
Sbjct: 139 VQVNTSGEESKFGLHPDDALDFIERLEAFPRLKPQGLMTLAIFSDDADRVRPCFTLLRSL 198
Query: 181 AR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++T LSMGMT D+ELA+ GAT VR+G IFG RP
Sbjct: 199 RDRAERIDARITGLSMGMTGDYELAVREGATVVRVGQAIFGPRPTP 244
>gi|94499757|ref|ZP_01306293.1| Predicted enzyme with a TIM-barrel fold protein [Oceanobacter sp.
RED65]
gi|94427958|gb|EAT12932.1| Predicted enzyme with a TIM-barrel fold protein [Oceanobacter sp.
RED65]
Length = 238
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 104/224 (46%), Gaps = 10/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ + + +I ++ +++V L+AVSK + IR + GQ F EN +QE
Sbjct: 9 LRSRFEQVQHQINDACAQY--KQNTVQLLAVSKRHSIEAIRAIHALGQQSFGENYVQEGV 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG LQSNK ++ F + T+ R+K A LS + L V
Sbjct: 67 DKINALSDLA-IEWHFIGPLQSNKTKDVAEHFAWMHTLERDKIAKRLSQQRPSHLPPLNV 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEI 180
IQ+N + KSGI L + GLMCIP F + +
Sbjct: 126 LIQINISQQESKSGISLQDLPALAQQVNDYDNLCLRGLMCIPAPQDEASLTQDFCSMFQA 185
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ K + LSMGM+ D ELAI G+T VR+GS IFG R
Sbjct: 186 FEKLKQQYSTVDTLSMGMSGDLELAIEQGSTMVRVGSAIFGPRD 229
>gi|333030146|ref|ZP_08458207.1| protein of unknown function UPF0001 [Bacteroides coprosuis DSM
18011]
gi|332740743|gb|EGJ71225.1| protein of unknown function UPF0001 [Bacteroides coprosuis DSM
18011]
Length = 223
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 25/234 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +++I + V LVAVSK IR A + GQ IF E+K QE
Sbjct: 1 MSITTNLKEIQKQI----------PEEVRLVAVSKYHSVDDIREAYNAGQRIFGESKAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + D+Q FIG LQSNK+ I +I +V + ++ E K+ R +
Sbjct: 51 LIAKHEE-LPQEDIQWHFIGHLQSNKIKYIAPFISLIHSVDTFRLLKNINKEAKKEGRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
P +Q++ E K G + +D + + K NV+ G+M + +
Sbjct: 110 PCLLQLHIADEDTKYGFSFTECRDMLKEGKWKELKNVKIAGVMGMATFTEDENLVKSEFK 169
Query: 179 EIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ T++SMGM++D+ +AI G+T +R+GS IFGER
Sbjct: 170 ALKDFFSEIQKEFFTTNEDFTEISMGMSQDYPIAIKEGSTLIRVGSKIFGERIY 223
>gi|148379437|ref|YP_001253978.1| hypothetical protein CBO1465 [Clostridium botulinum A str. ATCC
3502]
gi|153931706|ref|YP_001383816.1| hypothetical protein CLB_1490 [Clostridium botulinum A str. ATCC
19397]
gi|153937054|ref|YP_001387366.1| hypothetical protein CLC_1502 [Clostridium botulinum A str. Hall]
gi|168182394|ref|ZP_02617058.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Bf]
gi|237794803|ref|YP_002862355.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Ba4
str. 657]
gi|148288921|emb|CAL83008.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|152927750|gb|ABS33250.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A
str. ATCC 19397]
gi|152932968|gb|ABS38467.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A
str. Hall]
gi|182674285|gb|EDT86246.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Bf]
gi|229260689|gb|ACQ51722.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Ba4
str. 657]
Length = 223
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEYFKEKKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V IQ+N G E K GI + + + + + +GLM I P +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMK 170
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|313888289|ref|ZP_07821960.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845692|gb|EFR33082.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 236
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + L + IE + + +D V L+AVSK + I G F ENK+QE
Sbjct: 1 MDLKDNLIKLYEDIEIAKDKSNFNRD-VKLIAVSKTHPVEMIDEFNKLGVKDFGENKVQE 59
Query: 61 -----AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K+ K ++ IG+LQ+NKV I + +I+++ R K A +
Sbjct: 60 LVSKIEDKRIEESLKNNELNFHLIGNLQTNKVKYIYNKVKLIQSLDRIKLAKEIDKRAKN 119
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ +Q+N G E K GI ++T+DF+ + ++GLM I P +
Sbjct: 120 DDIIVDCLVQINIGDEDSKFGIKYDETEDFIYELLDYKNIKIKGLMAIAPNTEDEFLLRK 179
Query: 176 LLSEIARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ + + + LSMGM+ DF+LAI G+ +R+GS +FG R
Sbjct: 180 LFEKMNNKFEEISSKAYEGVEMKYLSMGMSHDFKLAIEEGSNMIRVGSKLFGNRNYN 236
>gi|255632027|gb|ACU16366.1| unknown [Glycine max]
Length = 239
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 15/228 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +++ +A + R + +VA SK +R G F EN +QE +
Sbjct: 10 LKAVQDRVQAAAERSGRNVQEIRVVAASKTKSVSALREVYDAGLRCFGENYVQELLQ--K 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IKQSRFLPV 122
+ D+Q IG+LQSNKV +++ + V + + + L V
Sbjct: 68 APQLPDDIQWHLIGNLQSNKVKPLIAAVPNLACVETVDDKKIANFLDRAVANVGRKPLKV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL----- 177
++QVNT E K G+ P D V L GLM I + P +
Sbjct: 128 FVQVNTSGETSKFGVEPALCVDLVKHITNCPNLEFSGLMTIGMLDYSSTPENFETLSNCR 187
Query: 178 SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SE+ + +++ LSMGMT DFE AI G+T+VRIG+ IFG R
Sbjct: 188 SEVCKALGISETQCELSMGMTGDFEQAIEMGSTNVRIGTAIFGAREYP 235
>gi|153871106|ref|ZP_02000360.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152072430|gb|EDN69642.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 228
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/224 (32%), Positives = 105/224 (46%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I + R + L+AVSK I A+ Q F EN LQ+A
Sbjct: 2 ISETLTTVRQRIAKACQQFARSPSDIQLLAVSKTRPVADIVTAIKNDQFRFGENYLQDAL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + ++ FIG LQSNK I FD +++V + K A L+ + Q L V
Sbjct: 62 PKIEA-LQAYPLEWHFIGPLQSNKTRLIAEHFDWVQSVDKLKYAQRLNAQRPAQLLPLNV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
IQVN E+QK+G+ + +L + GLM +P + I
Sbjct: 121 CIQVNISEEVQKAGVGLADLLPLAQAIAELPRLRLRGLMALPAPHQVFEQQRMPFRAIYT 180
Query: 182 --RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + L LSMGMT D AIA G+T VRIG+GIFG+R
Sbjct: 181 AYQQLQTSGLVLDTLSMGMTNDMMAAIAEGSTLVRIGTGIFGKR 224
>gi|187929987|ref|YP_001900474.1| alanine racemase domain-containing protein [Ralstonia pickettii
12J]
gi|187726877|gb|ACD28042.1| alanine racemase domain protein [Ralstonia pickettii 12J]
Length = 238
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R V+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K ++ FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGIAKIDALADLRTGADPIRWHFIGPLQSNKTRAVAEQFDWVHSIDRLKIAERLSAQRPN 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNP--- 170
L V +++N + K G++P+ + + +L + GLM +P +P
Sbjct: 121 TLPPLQVCLEINISRQASKHGLLPDFDEVLAVARAVSALPRLQLRGLMAVPEPSDDPAAQ 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L +A + L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RKPFADLRALADRLRETGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGARHY 235
>gi|288817913|ref|YP_003432260.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
gi|288787312|dbj|BAI69059.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
gi|308751511|gb|ADO44994.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
Length = 223
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 14/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS KL+ +++++ + A R ++ V L+ SK V +++IR +CG F EN++QE
Sbjct: 1 MS-CEKLREVEERLQKACERAGRKREEVVLLGASKSVPAQRIREFYACGLSTFGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ ++ + FIG LQSNKV I+ +I ++ R+ A ++ + +
Sbjct: 60 FLKKYQA-LEDIAIDWHFIGRLQSNKVKYILGKVSLIHSLDRDSLAQEINK---RANVVQ 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I+VN E K GI+P F L V GLMCIPP +P +P+F L
Sbjct: 116 NVLIEVNVAGEKTKGGIVPENLLAFYQHLLSYKNLRVLGLMCIPPYTEDPEKARPYFAKL 175
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + KL LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 176 RELKEKLESEFLVKLPHLSMGMSTDFEVAIEEGATIVRIGTLLFGER 222
>gi|87311294|ref|ZP_01093416.1| hypothetical protein DSM3645_27246 [Blastopirellula marina DSM
3645]
gi|87286034|gb|EAQ77946.1| hypothetical protein DSM3645_27246 [Blastopirellula marina DSM
3645]
Length = 235
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 13/224 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + KI +A A R D V L+AV+K VD + G E++ Q+
Sbjct: 9 LAENLAEVRGKIAAAADRAGRSSDDVRLIAVTKYVDLETTEALFELGCCDLGESRPQQLW 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
V+ IG LQ+NK + + + + R +
Sbjct: 69 -ARAEQFAARPVRWHMIGHLQTNKAKRTAPVLSWLHAGDSLRLLKAVDAAA-TADRRVQA 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
+++N + K GI P+ + + L + GLM + + +F L E
Sbjct: 127 LLEINISGDAAKHGIAPDDAPRVLEEAAKLPHLEIRGLMGMAALAGGVDVARANFAALRE 186
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LT+LSMGM+ D++ AI GAT VR+GS +F
Sbjct: 187 LRDRLAADAPDNIELTELSMGMSGDYQAAIEEGATMVRVGSSLF 230
>gi|315646043|ref|ZP_07899164.1| alanine racemase domain protein [Paenibacillus vortex V453]
gi|315278804|gb|EFU42118.1| alanine racemase domain protein [Paenibacillus vortex V453]
Length = 229
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +Q+I + + R ++ V+++AV+K V K L G EN+ Q+
Sbjct: 1 MSLMERIDQVEQRITEACARSGRDRNEVNMIAVTKYVSLDKTASVLDQGLQHIGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AQEKWNALGDR--GTWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G+ P + +F+ + V GLM + P +P F L
Sbjct: 119 SAFMQVNISGEESKYGLAPEKAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ E LT+LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 179 RQLRDELNEQALTLEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGK 226
>gi|89101245|ref|ZP_01174068.1| hypothetical protein B14911_01990 [Bacillus sp. NRRL B-14911]
gi|89084038|gb|EAR63216.1| hypothetical protein B14911_01990 [Bacillus sp. NRRL B-14911]
Length = 223
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++KI+ + + R V+++AV+K V +++ + A+S G EN+
Sbjct: 1 MKVEENLKSIQEKIDEACKRSGRNPGEVTIIAVTKYVSTERAKEAVSAGIGNLGENRDDG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIGSLQ+ KV I+ + D I ++ R A + + +
Sbjct: 61 MLAKHEEIGHA--AKWHFIGSLQTRKVKNIIGIADYIHSLDRLSLAKEID---KRAEETV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQVN E K G+ P + FV ++ GLM + P + + + +
Sbjct: 116 QCLIQVNASGEESKQGLSPEEVIPFVKDLEAYPYISAAGLMTMAPLTDDEEVLRHCFRTL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L +LSMGM+ DF +A+ GAT VRIG+ + GE
Sbjct: 176 KTLQKNIQDLNLAHAPCRELSMGMSNDFGIAVEEGATMVRIGTALVGE 223
>gi|187932582|ref|YP_001886626.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum B
str. Eklund 17B]
gi|187720735|gb|ACD21956.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum B
str. Eklund 17B]
Length = 224
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 105/232 (45%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ K +I +V L+AVSK + ++ A G F ENK+QE
Sbjct: 1 MSIKENIEKLKLEI----------PKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ D++ IG LQ+NKV +V +I ++S K + + K +
Sbjct: 51 LVS--KEVSLPKDIRWHLIGKLQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNMVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E KSGI+ + D + + +G+M I P +F
Sbjct: 109 NVLIQINIGREESKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNNKKYFKETK 168
Query: 179 EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
EI K+ + LSMGMT DF AI G+T VRIG GIFGER T
Sbjct: 169 EIFDYLKVREYRNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|119503505|ref|ZP_01625588.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
HTCC2080]
gi|119460567|gb|EAW41659.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
HTCC2080]
Length = 228
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L ++I + LA R SVSL+AVSK + IR A GQ F EN QEA
Sbjct: 5 NVATNLHRVWRRIGEAEQLANRHSGSVSLLAVSKTKPDRYIRAAWEAGQRAFGENYAQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K + ++ FIG +QSNK + + ++ R K A LS + + L
Sbjct: 65 EEKAR-RLDDLTIEWHFIGPIQSNKTRGLAETMAWVHSIDRLKIARRLSDQRPQHLPPLN 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ +QV E KSGI P++ + L++ GLM IP A + + ++
Sbjct: 124 LCLQVKLSDEPSKSGIAPSEIPALAAQITELPNLSLRGLMAIPAATSDYQQQRMAFKQLQ 183
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D E A+ G+T VR+G+ IFG R
Sbjct: 184 TQLFELQKQHPEVDTLSMGMSGDLEAAVVEGSTLVRVGTDIFGAR 228
>gi|110835530|ref|YP_694389.1| hypothetical protein ABO_2669 [Alcanivorax borkumensis SK2]
gi|110648641|emb|CAL18117.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 230
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L ++I++ R SV L+AVSK + ++ GQ F EN LQ
Sbjct: 2 MTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYLQ 61
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + + FIG +QSNK +I + FD + +V R K A LS + +S
Sbjct: 62 EALAKIAA-LRGRGLVWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG+ + + + GLM I P N + +
Sbjct: 121 LNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRGLMAI-PRADNDDGNRAAFRQ 179
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A L LSMGM+ D+ +AI GAT +R+G+ +FG RP +
Sbjct: 180 LAMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPK 229
>gi|323700142|ref|ZP_08112054.1| alanine racemase domain protein [Desulfovibrio sp. ND132]
gi|323460074|gb|EGB15939.1| alanine racemase domain protein [Desulfovibrio desulfuricans ND132]
Length = 235
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++ + +A A R + V+LVAVSK+ + IR GQ F EN +QEA
Sbjct: 8 LAERAAEVREALAVAAGQAGRAAEDVTLVAVSKLHPASDIRDLAETGQTEFGENYVQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L +V FIG LQSNK + F ++ +V K A L + + +
Sbjct: 68 DKQNELAGL-NVNWHFIGGLQSNKAKYVAGKFALVHSVDSSKLAQALHKKAVSLDVVQDI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E QKSGI + L + GLM +PP P +P F L E
Sbjct: 127 LIQVNIAGETQKSGITVESLPELAEAVLGMEGLRLVGLMTMPPFFDEPERARPVFARLRE 186
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGMT DF A+ GAT VRIG+ IFG RP +
Sbjct: 187 LRDGLEPRLGVSLPHLSMGMTGDFVPAVQEGATLVRIGTRIFGARPPR 234
>gi|332884068|gb|EGK04348.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas mossii DSM
22836]
Length = 222
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L K+ + ++V LVAVSK + I+ GQ +F E+++QE
Sbjct: 1 MNISDNLHKIKEAL----------PETVKLVAVSKFHPVEAIQKLYDTGQRVFGESRMQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV I+ I +V K + + + ++ +
Sbjct: 51 VDQKYNK--LPQDIEWHFIGHLQTNKVKAIIPYVHTIHSVDSWKLLQEIDKQATRVNKRI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
++++ E K G+ + + + +Q + G+M + N
Sbjct: 109 CCLLEIHIAEEDSKYGLSFDACRQMLNEGLWKQLKYAYIGGVMGMATFTDNVDLIRTEFR 168
Query: 179 EIA---RECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K ++SMGM+ D+E+A+ GAT VR+GS IFG+R
Sbjct: 169 SLKLFYDKLKADYFQDFDSFSEISMGMSDDYEIAVEEGATIVRVGSSIFGQREY 222
>gi|323142723|ref|ZP_08077440.1| pyridoxal phosphate enzyme, YggS family [Succinatimonas hippei YIT
12066]
gi|322417518|gb|EFY08135.1| pyridoxal phosphate enzyme, YggS family [Succinatimonas hippei YIT
12066]
Length = 241
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ +I + A+R ++ ++L+ VSK +I A + G+ F E+ + EA
Sbjct: 10 NITSNLKKVHDEINSCLQRAERSQNDLTLLCVSKTKPISQIIEAYNAGERHFGESYISEA 69
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + D+ FIG +QSNK I LFD++E+V R K A LS + K
Sbjct: 70 KDKIPQIKEMGYKDIVWHFIGPIQSNKTKHIAELFDIVESVDRLKVAQRLSDQRPKNLPP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN E QKSG + + QL + GLM + + + +
Sbjct: 130 LKVLIQVNISNEEQKSGCSYADLDVLINEVQNLPQLELCGLMGVAEDTADKEIIDKSFVK 189
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GMT D +LAI G+T +RIG+ IFG R
Sbjct: 190 LHETFNSLKQKLPHFDILSIGMTHDMDLAIKEGSTEIRIGTAIFGARNY 238
>gi|308271245|emb|CBX27854.1| UPF0001 protein aq_274 [uncultured Desulfobacterium sp.]
Length = 231
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K ++ SA+ R +S+ ++AV+K V ++KIR+A+ G I EN +Q+A+
Sbjct: 1 MKERIAEIKNRVIRSALSCGRDPESIRIIAVTKTVTAEKIRMAIESGIQIIGENYIQDAR 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ PL +V FIG LQ+NK V +FD+I TV + A L + K ++ +
Sbjct: 61 EKY-PLLSSNEVPWHFIGHLQTNKAKYAVKMFDLIHTVDSYRLAVELDAQAKKINKVQQI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
IQVN G E KSGI D + L V+GLM IPP +P+ + +
Sbjct: 120 LIQVNIGKEKSKSGITQETAFDLIKKIGGLNNLRVKGLMVIPPFYDDPERTRPYFAALRI 179
Query: 182 --------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ +LSMGM+ DFE I GAT VRIG+ IFGER
Sbjct: 180 LRDRINSLLEPEDIQNIRMEELSMGMSGDFETGIEEGATLVRIGTAIFGER 230
>gi|303246794|ref|ZP_07333071.1| alanine racemase domain protein [Desulfovibrio fructosovorans JJ]
gi|302491811|gb|EFL51691.1| alanine racemase domain protein [Desulfovibrio fructosovorans JJ]
Length = 229
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 11/224 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L K +I ++ R +V+LVAVSK+ D ++ +CGQ IF E+ +QEA
Sbjct: 6 AKRLAHVKGRIADACAACGRDPAAVTLVAVSKLHDVAEVAAMAACGQRIFGESYIQEALP 65
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + FIG LQ NK V+ F +I TV A +L + +
Sbjct: 66 KMEAAPA--GLAWHFIGHLQRNKAKLAVARFALIHTVDNADLAGILQKRTAEAGLTQDIC 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E QKSG+ P + L + GLM IPP +P +P F L +
Sbjct: 124 LQVNVAGESQKSGVDPRRLPKLAEAVAAMGALRLVGLMVIPPVFDDPEGARPVFARLRTL 183
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 184 RDELASRLALPLPVLSMGMSGDLEAAVMEGATHVRVGTDLFGPR 227
>gi|251791951|ref|YP_003006671.1| hypothetical protein NT05HA_0146 [Aggregatibacter aphrophilus
NJ8700]
gi|247533338|gb|ACS96584.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
Length = 234
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 11/215 (5%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQ 75
++ R + +V L+AVSK + I +A + GQV F EN +QE +K ++ ++
Sbjct: 18 ASHAVGREQSAVKLLAVSKTKPVEDILIAYAAGQVAFGENYVQEGVEKIQYCQQHDISLE 77
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK + FD ++T+ R K A L+ + L V IQ+N E KS
Sbjct: 78 WHFIGPLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRPPYKAPLNVLIQINISQEATKS 137
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIARECK------- 185
GI P+ L + GLM IP + F + + + +
Sbjct: 138 GIQPSDMLTLAKHIENLPHLRLRGLMAIPEPTDDVAQQEQTFCQMKTLFEQLQQALPNAQ 197
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D + AI G+T VRIG+ IFG+R
Sbjct: 198 IDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGKRDY 232
>gi|194014843|ref|ZP_03053460.1| pyridoxal phosphate enzyme, YggS family [Bacillus pumilus ATCC
7061]
gi|194013869|gb|EDW23434.1| pyridoxal phosphate enzyme, YggS family [Bacillus pumilus ATCC
7061]
Length = 229
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ ++I + A R D +S+VAV+K V ++ + A G + F EN+ Q
Sbjct: 1 MNVRENLRQINEQINEACKRAGRNPDDISVVAVTKYVSIERAQEAKEAGILHFGENRDQG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + E + FIGSLQ+ KV ++ D + ++ R A+ + + +
Sbjct: 61 LLEKQAAITDES-ISWHFIGSLQTRKVKSVIQSIDYLHSLDRISLANEIE---KRADHTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ FV + + GLM + P + + F L
Sbjct: 117 RCFVQVNTSLEESKHGLQNEDVIPFVKQLADFKHIEIAGLMTMAPFTDDHTVIRNCFKTL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E K LSMGM+ DFE+AI GAT VRIGS + G
Sbjct: 177 KNLQEEVKHLNQVNAPCQHLSMGMSNDFEIAIEEGATFVRIGSSLVGN 224
>gi|261342368|ref|ZP_05970226.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cancerogenus
ATCC 35316]
gi|288315003|gb|EFC53941.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cancerogenus
ATCC 35316]
Length = 233
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + ++L+AVSK + + A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAQVRDKISAAATRCSRASEEITLLAVSKTKPASALAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + + D+Q FIG LQSNK + FD T+ R K A+ L+ +
Sbjct: 61 EGVDKICHFRDQGQDDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLKIAARLNDQRPADM 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI ++ L + GLM IP + + F +
Sbjct: 121 APLNVLIQINISDENSKSGIALSELDALAAEVAALPHLTLRGLMAIPAPESSYERQFAVA 180
Query: 178 SEIA---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++A K LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 181 RQMAVAFEALKARYTTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|297617004|ref|YP_003702163.1| alanine racemase domain protein [Syntrophothermus lipocalidus DSM
12680]
gi|297144841|gb|ADI01598.1| alanine racemase domain protein [Syntrophothermus lipocalidus DSM
12680]
Length = 233
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 15/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++I +A + R + ++LVAVSK VD + I A G F EN++QE
Sbjct: 8 LEQSIAEVRERIRRAAQRSGRQEQEITLVAVSKTVDLETISRAAQLGITHFGENRVQEFL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLP 121
K+ L Q FIG LQ+NKV +++ +I ++ R + A + + +
Sbjct: 68 PKYKELPHL---QWHFIGHLQTNKVKDVIGKACLIHSLDRWRLAEYIDGKAKLLGLAEVD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V ++VN E K G++P+ F+ + ++ V GLM + P + +P +P F L
Sbjct: 125 VLLEVNVSGERSKYGLLPSDVPAFLDAVERLERVRVRGLMTVAPQVDDPELARPVFKKLR 184
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + K + LSMGMT+DFE+A+ G+ VR+G+ IFG R
Sbjct: 185 SIFEDIKKRQYRNTEMLYLSMGMTQDFEVAVEEGSNMVRVGTAIFGAR 232
>gi|182681687|ref|YP_001829847.1| alanine racemase domain-containing protein [Xylella fastidiosa M23]
gi|182631797|gb|ACB92573.1| alanine racemase domain protein [Xylella fastidiosa M23]
gi|307580125|gb|ADN64094.1| alanine racemase domain-containing protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 261
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK D IR++ G ENK Q+A
Sbjct: 23 DIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQDA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 83 YHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVNT E K G+ P + FV L V GLM + G+ +++
Sbjct: 143 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLR 202
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 203 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 250
>gi|305667230|ref|YP_003863517.1| hypothetical protein FB2170_13311 [Maribacter sp. HTCC2170]
gi|88708164|gb|EAR00402.1| hypothetical protein FB2170_13311 [Maribacter sp. HTCC2170]
Length = 226
Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ + D V+LVAVSK + I A GQ IF ENK+QE
Sbjct: 9 MSIATNLNKIKQAL----------PDDVTLVAVSKTKPNTSILEAYEAGQRIFGENKIQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW D+Q IG +Q NKV + +I V + ++ + K +R +
Sbjct: 59 MAQKWEA--LPKDIQWHMIGHVQRNKVKYMSEFVSLIHGVDSFRLLKEINKQAKKHNRTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+QV+ E K G+ ++ K ++ + + GLM + N
Sbjct: 117 SCLLQVHIADEETKFGLDESELKTITNSEEFKRLENIKIIGLMGMATFTNNKTQIRKEFK 176
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ LSMGM+ D+ +AI G+T VRIGS IFG R
Sbjct: 177 NLKDVFDVLKESLPHVSTLSMGMSGDYTVAIEEGSTMVRIGSSIFGARNY 226
>gi|300854251|ref|YP_003779235.1| hypothetical protein CLJU_c10650 [Clostridium ljungdahlii DSM
13528]
gi|300434366|gb|ADK14133.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 243
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 21/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ L ++++++ +V+LVAVSK + I+ A G F ENK+QE
Sbjct: 22 LSIEQNLSRIEEELKD---------KNVTLVAVSKTKPIEDIQKAYDAGIRDFGENKVQE 72
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ IG LQ NKV IV +I ++ + + L Q
Sbjct: 73 LTNKIP--NLPQDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLNELEKHYKDQKLIA 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
IQ+N G E K+G+ + +D + C + V+GLM + P + K +F L
Sbjct: 131 NTLIQINIGLEESKTGLPLEELEDLLKACENCTNVKVKGLMAVIPKGDEESCKNYFQKLK 190
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I K + LSMGMT D+++AI GAT VRIG GIFG+R
Sbjct: 191 SIFDGLKKREFNNISMNILSMGMTHDYKIAIKEGATLVRIGEGIFGKRNYN 241
>gi|317405236|gb|EFV85574.1| alanine racemase [Achromobacter xylosoxidans C54]
Length = 275
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L V +++ + R V L+ VSK +D +IR+A + G + ENK+QEA
Sbjct: 36 DFRHNLAVIHARMDAACRRVGRDPAGVRLLPVSKTMDESRIRLAHAAGCRLLGENKIQEA 95
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+KW D++ IG LQ+NK + + + + A L + + R L
Sbjct: 96 HRKWQNTADLPDLRWSVIGHLQTNKAKLMAQFASEFQALDSLRLAEALDRRLQAEGRALD 155
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
VY+QVNT E K G+ P+ F+ L V G M + +
Sbjct: 156 VYVQVNTSGEPSKYGLAPDDVAAFIQALPAFSSLRVRGFMTLALFSSEAERVRQCFVLLR 215
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 216 GLRDRLRQDAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 263
>gi|16078602|ref|NP_389421.1| hypothetical protein BSU15380 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309412|ref|ZP_03591259.1| hypothetical protein Bsubs1_08506 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313737|ref|ZP_03595542.1| hypothetical protein BsubsN3_08442 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318661|ref|ZP_03599955.1| hypothetical protein BsubsJ_08376 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322934|ref|ZP_03604228.1| hypothetical protein BsubsS_08482 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|3183467|sp|O31727|YLME_BACSU RecName: Full=UPF0001 protein ylmE
gi|2633911|emb|CAB13412.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
Length = 230
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + + FIGSLQS K +V+ I ++ R A + + +
Sbjct: 61 LLRKQELMKG--NPEWHFIGSLQSRKAKSVVNSVSYIHSLDRLSLAKEIE---KRAEGTV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVNT E K G+ + F+ + V GLM + P + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGN 223
>gi|291484089|dbj|BAI85164.1| hypothetical protein BSNT_02539 [Bacillus subtilis subsp. natto
BEST195]
Length = 230
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + + FIGSLQS K +V+ I ++ R A + + +
Sbjct: 61 LLRKQELMKG--NPEWHFIGSLQSRKAKSVVNAVSYIHSLDRLSLAKEIE---KRAEGTV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVNT E K G+ + F+ + V GLM + P + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGN 223
>gi|332705066|ref|ZP_08425151.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
gi|332356243|gb|EGJ35698.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
Length = 240
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +Q Q+++ +V L+AVSK V +K+R A G F EN+LQEA
Sbjct: 25 ITDNIQQILQQLK----------PNVRLIAVSKTVSVEKMREAYGAGIRDFGENRLQEAC 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + FIG LQ NK V D I +V K A L+ + ++ V
Sbjct: 75 AKQEQLKDLEGISWHFIGHLQKNKAKLAVQTMDWIHSVDDLKLAQSLNRRANELNKRPKV 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+ + K G Q + + L+++GLM I P + F E+A+
Sbjct: 135 CLQIKILPDPNKYGWSVEQLLETLPELEACDSLDIQGLMTILPLELSEAEIFDAFVEVAK 194
Query: 183 ---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L ++SMGM+ D+ AI +GAT +R+GS IFG+R
Sbjct: 195 FKEQLNQTTQLNLKEVSMGMSGDYLQAIKAGATMIRLGSKIFGKR 239
>gi|262277792|ref|ZP_06055585.1| pyridoxal phosphate enzyme, YggS family [alpha proteobacterium
HIMB114]
gi|262224895|gb|EEY75354.1| pyridoxal phosphate enzyme, YggS family [alpha proteobacterium
HIMB114]
Length = 211
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ K+++ ++ I + ++AVSK + I+ + G + + ENK+QE
Sbjct: 1 MSIVQNLENIKKELVSNNINS-------KIIAVSKTFELSHIQPLIDHGHLAYGENKVQE 53
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK+KW L + ++QL IG LQ+NK + V LF I +V REK L+ +
Sbjct: 54 AKRKWEELLKINNNIQLHLIGGLQTNKSKDAVKLFHYIHSVDREKLVDTLASAETNLNLK 113
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++QVNTG E QKSG+ T+ + + ++++ GLMCIPP + K HF +L E
Sbjct: 114 RKYFLQVNTGDEDQKSGVSIENTEQ--LYNYAQKKIDIIGLMCIPPVEEDSKKHFEILRE 171
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + L +LSMGM+ D+ A A+GAT VR+GS IFG R
Sbjct: 172 LSIKLNLKELSMGMSHDYLEAGANGATYVRVGSKIFGARD 211
>gi|85714105|ref|ZP_01045094.1| hypothetical protein NB311A_08113 [Nitrobacter sp. Nb-311A]
gi|85699231|gb|EAQ37099.1| hypothetical protein NB311A_08113 [Nitrobacter sp. Nb-311A]
Length = 224
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 95/213 (44%), Positives = 133/213 (62%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I + A+R + SV+LVAVSK D++ I ++ GQ +F EN++QEA++KW
Sbjct: 12 LASVEAAIVRACRDARRDRSSVTLVAVSKTFDAEAITPVIAAGQRVFGENRVQEAQRKWP 71
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + L IG LQSNK + V+LFD I +V R L+ E+ +Q+R +++Q
Sbjct: 72 ELIAAHPGIVLHLIGPLQSNKAKDAVALFDAIHSVDRVSLCEALAKEIDRQNRRPALFVQ 131
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G++P DF+ CR Y L + GLMCIPP P PHF L ++IAR
Sbjct: 132 INTGEEPQKAGVVPADADDFIARCRDTYGLTISGLMCIPPVDEAPAPHFALTAKIARRNG 191
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DF +AIA GAT VR+GS IFG R
Sbjct: 192 LEQLSMGMSADFAVAIALGATHVRVGSAIFGTR 224
>gi|261405677|ref|YP_003241918.1| alanine racemase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282140|gb|ACX64111.1| alanine racemase domain protein [Paenibacillus sp. Y412MC10]
Length = 240
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++ +Q+I + + R ++ V+++AV+K V L G + EN+ Q+
Sbjct: 12 LSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 72 AQAKWNALGNR--GTWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQV 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
+QVN E K G+ P Q +F+ + V GLM + P +P F L
Sbjct: 130 SALMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGL 189
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ E LT+LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 190 RQLRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGK 237
>gi|254292388|ref|YP_003058411.1| alanine racemase domain protein [Hirschia baltica ATCC 49814]
gi|254040919|gb|ACT57714.1| alanine racemase domain protein [Hirschia baltica ATCC 49814]
Length = 228
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 1/222 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + +I+ +A+ S++L AVSK+ +I L+ GQ ++ EN++QE
Sbjct: 6 LSISERRADILARIKKTALSKGVDPQSITLTAVSKVQPENRIEDMLAIGQRVYGENRVQE 65
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A ++W +++ D++LR IG LQ+NK E V LFDVIET+ R K A ++ + K +
Sbjct: 66 AFERWGERKQQIPDLKLRLIGPLQTNKAEEAVRLFDVIETIDRLKLAQSIAKAVQKTGKN 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+GI+P + DF+ ++ L + GLMCIPP PHF LL +
Sbjct: 126 PELFVQVNTGEEDQKAGILPGEVDDFLKQIVSEFSLKISGLMCIPPVDEPAGPHFALLRK 185
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
IA ++KLSMGM+ DFE AI GAT VR+GS +FGER +
Sbjct: 186 IANRNGISKLSMGMSSDFETAIGFGATHVRVGSALFGERIPK 227
>gi|28198973|ref|NP_779287.1| hypothetical protein PD1080 [Xylella fastidiosa Temecula1]
gi|28057071|gb|AAO28936.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 241
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK D IR++ G ENK Q+A
Sbjct: 3 DIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQDA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 63 YHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVNT E K G+ P + FV L V GLM + G+ +++
Sbjct: 123 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLR 182
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 183 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 230
>gi|94987085|ref|YP_595018.1| TIM-barrel fold family protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731334|emb|CAJ54697.1| predicted enzyme with a TIM-barrel fold [Lawsonia intracellularis
PHE/MN1-00]
Length = 233
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +I+ + + + R K SV L+A+SK K I + GQ F EN +QEA
Sbjct: 7 LKERLEFLHDQIQQAVVSSGRDKKSVKLIAISKFHPVKTIVNVFNYGQKAFGENYVQEAI 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ F G LQ+NK+ +V F+ I T+ K A LLS + + +
Sbjct: 67 YKQSELSGL-PIEWHFTGRLQTNKIKNVVGQFEYIHTIDSIKLAKLLSSRLPEDGPSQKI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
+QVN G E QK+GI + +L + GLMC+PP +F L E
Sbjct: 126 LLQVNIGDEPQKAGITVAELPFLAETILSLPKLKLCGLMCLPPITHKGKVVSCYFTKLRE 185
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM+ D+ AI GAT +RIG+ IFG R
Sbjct: 186 LRDRLEVLLDITLPELSMGMSNDYIQAIKEGATLIRIGTSIFGHR 230
>gi|321315303|ref|YP_004207590.1| hypothetical protein BSn5_19795 [Bacillus subtilis BSn5]
gi|320021577|gb|ADV96563.1| hypothetical protein BSn5_19795 [Bacillus subtilis BSn5]
Length = 230
Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + + FIGSLQS K +V+ I ++ R A + + +
Sbjct: 61 LLRKQELMKG--NPEWHFIGSLQSRKAKSVVNAVSYIHSLDRLSLAKEIE---KRAEGIV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVNT E K G+ + F+ + V GLM + P + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGN 223
>gi|325298083|ref|YP_004258000.1| hypothetical protein Bacsa_0936 [Bacteroides salanitronis DSM
18170]
gi|324317636|gb|ADY35527.1| protein of unknown function UPF0001 [Bacteroides salanitronis DSM
18170]
Length = 224
Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++ + V LVAVSK ++ I A GQ IF E+K QE
Sbjct: 1 MDIQTNLRNVLAEL----------PEGVRLVAVSKFHPAEAIEEAYRAGQRIFGESKEQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV I +IE V K + ++ + K +R +
Sbjct: 51 LSEKY--NVLPKDIEWHFIGHLQTNKVKYIAPYITLIEAVDSYKLLTEINKQAGKHNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
P ++++ E K G P+ ++ + K N+ G+M + +
Sbjct: 109 PCLLEIHVAQEESKYGFTPDDCREMLEAGEWKELHNIRIAGVMGMATNTDDEAQIEREFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A E ++SMGM+ D+ +AI +G+T VR+GS IFGER
Sbjct: 169 TLKALFDEWKQAFFADEPAFKEISMGMSHDYRIAIRAGSTLVRVGSKIFGERNY 222
>gi|300778396|ref|ZP_07088254.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
gi|300503906|gb|EFK35046.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
Length = 219
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ K ++ +V LVAVSK + ++ GQ +F ENK+QE
Sbjct: 1 MSIKENYNAIKNQL----------PSTVQLVAVSKTHPASAVQEVYDLGQKVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ D+Q IG LQ+NKV I D I++V EK + ++ E K +R +
Sbjct: 51 LME--KAPLLPQDIQWHLIGHLQTNKVKYIAPFIDTIQSVDSEKVLAEINKEAGKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPKPHFYL-- 176
V +QV E K G+ ++ +D R Q + + GLM + + +
Sbjct: 109 KVLLQVKIAAEESKFGLDISEARDLFGKYRDGQFPNVEITGLMGMATFTDDEQQVRNEFL 168
Query: 177 -LSEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + E L LSMGM+ DF +AI GA SVR+GS IFG R
Sbjct: 169 ILKGLFDEFNQLKALNTLSMGMSDDFPIAIECGANSVRVGSAIFGRRDYS 218
>gi|303239841|ref|ZP_07326364.1| alanine racemase domain protein [Acetivibrio cellulolyticus CD2]
gi|302592551|gb|EFL62276.1| alanine racemase domain protein [Acetivibrio cellulolyticus CD2]
Length = 235
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + + K+E +AI + R + ++++ VSK V+ +KI A+ G EN++QE
Sbjct: 8 IKKNLDIIRGKVERAAIKSGRKLEDITIIGVSKTVEPEKIIRAIDEGITELGENRVQELT 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + + IG LQ+NKV +V +I +V R A + K + + +
Sbjct: 68 EKYDIINRSCN--WHLIGHLQTNKVKYVVDKVKMIHSVDRYDLALEIHNRAKKIGKVVDI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E K G+ P+ + + + V G M + P NP+ + S + +
Sbjct: 126 LVQVNISGEKSKFGVSPDGALELIKQIVTLENVRVRGFMTMAPFASNPEKVRNVFSGLRK 185
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+E+AI GA VRIG+ +FG+R
Sbjct: 186 LSIDIEKENINNIVIDYLSMGMSNDYEIAIEEGANLVRIGTALFGQRQY 234
>gi|251797863|ref|YP_003012594.1| alanine racemase domain protein [Paenibacillus sp. JDR-2]
gi|247545489|gb|ACT02508.1| alanine racemase domain protein [Paenibacillus sp. JDR-2]
Length = 242
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 17/232 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +++ ++++ + + R ++ V+++AV+K V + + A G EN+ Q+AK
Sbjct: 9 LQERIEEVERRVAAACKRSGRSREEVNIIAVTKYVSLETAQAAHQLGLRHLGENRWQDAK 68
Query: 63 KKWIPLRKEWDVQ------LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+KW + + FIGSLQ+NKV +++ F I ++ R A + +
Sbjct: 69 EKWEAISDSVTGENGGQAVWHFIGSLQTNKVKDVIGKFTYIHSLDRLSLAQAIDKRASQL 128
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPH 173
+P +QVN E K G+ P Q F+ ++ L + GLM + P +P
Sbjct: 129 GLTVPCLVQVNVSGEQSKHGLDPEQLPAFLAELKELSSLRIIGLMTMAPYETEAEETRPI 188
Query: 174 FYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L ++ E +T+LSMGM+ DFE+AI GAT +R+G+ + G+
Sbjct: 189 FRSLRKLRDEMNERAILAESMTELSMGMSGDFEVAIEEGATWIRLGTILVGK 240
>gi|295399727|ref|ZP_06809708.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111754|ref|YP_003990070.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
gi|294978130|gb|EFG53727.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216855|gb|ADP75459.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
Length = 225
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + ++ IE + R + +VAV+K V ++ + AL G EN+
Sbjct: 1 MTVRDNLAIIRENIEAACQRVGRDPADIRIVAVTKYVSVERAKEALEAGITDLGENRDDG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + FIG+LQS KV I+ D I ++ R A + + ++ +
Sbjct: 61 LLQKYEA--LGNEPTWHFIGTLQSRKVKHIIDKVDYIHSLDRMSLAKEIE---KRATKRM 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ + F+ R ++ V GLM + P + + F L
Sbjct: 116 KCFVQVNVSGEATKHGLAKEEVIPFIEQLRDFSRIEVIGLMTMAPYTDDESVLRSCFRQL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 KLLQENVQALHIPNAPCTELSMGMSNDYVIAIEEGATFIRLGTSLVGK 223
>gi|237712817|ref|ZP_04543298.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408826|ref|ZP_06085371.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294648180|ref|ZP_06725720.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CC
2a]
gi|294810758|ref|ZP_06769406.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
SD CC 1b]
gi|298484090|ref|ZP_07002258.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. D22]
gi|229447145|gb|EEO52936.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262353037|gb|EEZ02132.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636455|gb|EFF54933.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CC
2a]
gi|294442091|gb|EFG10910.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
SD CC 1b]
gi|298269771|gb|EFI11364.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. D22]
Length = 222
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
+Q++ E K G P + K+ + ++ + + GLM + + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNVGEWKELTHVRICGLMGMASNTDCIEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLNRLFNEIKTTWFTHSDTFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|300115526|ref|YP_003762101.1| alanine racemase domain-containing protein [Nitrosococcus watsonii
C-113]
gi|299541463|gb|ADJ29780.1| alanine racemase domain protein [Nitrosococcus watsonii C-113]
Length = 231
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 9/227 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L +I + R + SVSLVA SK IR A+ GQ F EN LQEA
Sbjct: 4 IALQLAEIYTRIAQAERRFGRSEGSVSLVAASKTCPVSAIRAAVVGGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + ++ FIG +QSNK +I + FD + +V+R K A LS + + L V
Sbjct: 64 PKIKE-LETEGLEWHFIGPIQSNKTRDIATHFDWVHSVARLKIAQRLSQQRPPELAPLNV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
+QVN E KSG + + + QL++ GLM +P + F L +
Sbjct: 123 CLQVNISGESSKSGTTTQELAELAAAVTEMPQLSLRGLMTLPALNSDFEAQRRPFRALHQ 182
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E + L LSMGMT D E AIA GAT VR+G+ IFG RP +
Sbjct: 183 LWEELRQKGFALDSLSMGMTDDLEAAIAEGATLVRVGTAIFGSRPRK 229
>gi|319955722|ref|YP_004166989.1| hypothetical protein Celal_4250 [Cellulophaga algicola DSM 14237]
gi|319424382|gb|ADV51491.1| protein of unknown function UPF0001 [Cellulophaga algicola DSM
14237]
Length = 216
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + LQ K + ++V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAHNLQKIKASL----------PENVTLVAVSKTKPIPDLVEAYEVGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW D+Q IG +Q+NKV + ++ V K ++ + K R +
Sbjct: 51 MTQKWEE--LPKDIQWHMIGHVQTNKVKYMAEYVHLVHGVDSFKLLKEINKQAKKYDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPN--QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G+ + +N++GLM + N
Sbjct: 109 NCLLQIHIAEEDTKFGLDKEELFAILDSDEFKALNNINIKGLMGMATFTENEDQVRREFK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ D+++AI G+T VRIGS IFG R
Sbjct: 169 SLKTLFDLSTIKLDHLDTLSMGMSGDYKMAIEEGSTMVRIGSSIFGSR 216
>gi|83589709|ref|YP_429718.1| hypothetical protein Moth_0858 [Moorella thermoacetica ATCC 39073]
gi|83572623|gb|ABC19175.1| Protein of unknown function UPF0001 [Moorella thermoacetica ATCC
39073]
Length = 236
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + ++I +A + R + ++LVAV+K V ++IR A++CG EN++QE
Sbjct: 3 NVSENITRVLERIAAAARRSGRRPEDITLVAVTKTVPVERIREAVACGLKDLGENRVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
V IG LQ NKV ++ +I +V + A ++ R +
Sbjct: 63 L---SKQPHVEGVNWHLIGHLQRNKVRQVWDRVCLIHSVDSLELAREINKRATAAGRRVD 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ ++VN E K G++P+ V L++ GLM + P + +P +P F L+
Sbjct: 120 ILLEVNIAGEESKFGLVPDAVIPLVREIAGWPGLHICGLMTVAPLVADPEEVRPVFLRLA 179
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ RE + LSMGMT DFE+AI +GA VRIGS IFG R QT
Sbjct: 180 ALRREVEALRLPGVDMAYLSMGMTNDFEVAIEAGANMVRIGSAIFGSRDYQT 231
>gi|78059216|gb|ABB17984.1| conserved hypothetical protein [Aggregatibacter aphrophilus]
Length = 234
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 101/215 (46%), Gaps = 11/215 (5%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQ 75
+ R + +V L+AVSK + I +A + GQV F EN +QE +K ++ ++
Sbjct: 18 ACHAVGREQSAVKLLAVSKTKPVEDILIAHAAGQVAFGENYVQEGVEKIQYCQQHDVSLE 77
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK + FD ++T+ R K A L+ + L V IQ+N E KS
Sbjct: 78 WHFIGPLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRSPYKAPLNVLIQINISQESSKS 137
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIARECK------- 185
GI P+ L + GLM IP + F + + + +
Sbjct: 138 GIQPSDMLPLAKHIENLPHLRLRGLMAIPEPTNDVAQQEQTFCQMKTLFEQLQQALPNAQ 197
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 198 IDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGTRDY 232
>gi|261856426|ref|YP_003263709.1| alanine racemase domain protein [Halothiobacillus neapolitanus c2]
gi|261836895|gb|ACX96662.1| alanine racemase domain protein [Halothiobacillus neapolitanus c2]
Length = 223
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 79/222 (35%), Positives = 109/222 (49%), Gaps = 7/222 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + K +IE ++ RP SV L+AVSK + + S GQ F E+ LQEA
Sbjct: 3 SLHERFSSIKNRIERASHAVGRPDGSVVLIAVSKRQTIEAMAQLASLGQRDFGESYLQEA 62
Query: 62 KKKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + FIG +QSNK I F + +V R K A L+ + +
Sbjct: 63 LDKQSALADQPVGASIVWHFIGPIQSNKTRGIAENFSWVHSVDRPKIAQRLNDQRPIELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V I+VN E KSG++P Q V + + +L + GLM IP F L+
Sbjct: 123 PLNVLIEVNIDGEASKSGVLPEQLPGMVDIFQNLPRLKLMGLMAIPAPG--SSDGFCRLA 180
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ DFE AIA+G+T VR+GS +FG R
Sbjct: 181 ALNARLESPLPVLSMGMSDDFEAAIAAGSTHVRVGSALFGPR 222
>gi|295087674|emb|CBK69197.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
XB1A]
Length = 222
Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
+Q++ E K G P + K+ + ++ + + GLM + + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNVGEWKELTHVRICGLMGMASNTDCIEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLNRLFNEIKTTWFTHSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|294102393|ref|YP_003554251.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
gi|293617373|gb|ADE57527.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
Length = 234
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQE 60
+ +++ + IE A + R + L+A++K +++ A+ G + EN++QE
Sbjct: 5 DIRKNVELIRNSIEEGAAKSGRQAHEIKLIAITKNHAVEEMVTAIRDAGIMYIGENRVQE 64
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K +E Q +G LQ NK + + +F I+++ E A L ++ +R +
Sbjct: 65 AQTKICSWPEEVQAQWHLVGHLQRNKARKALEIFHTIQSLESESLAERLERICVEMNRTV 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
V ++VNT E K G+ P + + + L+V G M + P + F L
Sbjct: 125 QVLLEVNTSGETSKHGVAPKDVQALLDFVIEKCPSLHVAGFMTVGPLTDDENRVREAFAL 184
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L +LSMGM+ DF+ AI G+T VRIG+ IFG R
Sbjct: 185 LRNLRDDLSSSTGVSLPELSMGMSGDFQWAIEEGSTMVRIGTAIFGPRSY 234
>gi|317050340|ref|YP_004111456.1| alanine racemase domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945424|gb|ADU64900.1| alanine racemase domain protein [Desulfurispirillum indicum S5]
Length = 222
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 11/225 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + +I + A ++S LVAVSK + + A G F EN+L
Sbjct: 1 MDEIALHYTRICAEIHALSQQAG--QESPVLVAVSKTFPASAVLEAYGAGCRDFGENRLP 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K D++ F+G LQS K ++V +I ++ R A + +
Sbjct: 59 EFLQKVRE--LPRDIRWHFVGQLQSRKARDVVGKAHLIHSLDRLSLAEAVEKQAASLKLV 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+QVN G E QK G+ P F+ R + V GLMCIPPA + +F + +
Sbjct: 117 QGCLVQVNIGDEPQKGGVKPADLSGFIGQLRSFPHVEVRGLMCIPPASEDATLYFRQMRQ 176
Query: 180 IARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +LSMGM+ D+ LA+ G+T VRIGS IFG+R
Sbjct: 177 LRQRMQEEFPGLGGELSMGMSDDYSLAVREGSTLVRIGSAIFGQR 221
>gi|90407098|ref|ZP_01215287.1| putative alanine racemase [Psychromonas sp. CNPT3]
gi|90311820|gb|EAS39916.1| putative alanine racemase [Psychromonas sp. CNPT3]
Length = 232
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 13/232 (5%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M++ + +Q+IE++A+ A R V L+AVSK +I+ A GQ +F EN +Q
Sbjct: 1 MTIIQKNIMHVRQQIEHAAVQAGRTTLDVQLLAVSKTKPVAQIKEAYMAGQRLFGENYVQ 60
Query: 60 EAKKKWI----PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E+ +K + FIG LQSNK + FD +++V R K A LS +
Sbjct: 61 ESIEKIQLIKDDCSFNDPICWYFIGPLQSNKTRLVAENFDWVQSVDRFKIAQRLSAQRPT 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L + +Q+N E KSG Q + L + G+M IP +
Sbjct: 121 NLTPLNICLQINISAEASKSGTTLTQIMELAAQVSLLENLTLRGIMAIPEKTQDQAILSQ 180
Query: 176 LLSEIAR-ECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ KL LSMGM+ D +LAIASG+T VRIG+ IFG R
Sbjct: 181 QFKALHHIYLKLQTLYPEVDTLSMGMSADMQLAIASGSTMVRIGTDIFGRRN 232
>gi|52785516|ref|YP_091345.1| YlmE [Bacillus licheniformis ATCC 14580]
gi|163119423|ref|YP_078931.2| putative carboxypeptidase YlmE [Bacillus licheniformis ATCC 14580]
gi|319646081|ref|ZP_08000311.1| YlmE protein [Bacillus sp. BT1B_CT2]
gi|52348018|gb|AAU40652.1| YlmE [Bacillus licheniformis ATCC 14580]
gi|145902930|gb|AAU23293.2| putative carboxypeptidase YlmE [Bacillus licheniformis ATCC 14580]
gi|317391831|gb|EFV72628.1| YlmE protein [Bacillus sp. BT1B_CT2]
Length = 231
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ +I + I A R D +S++AV+K V ++ + AL G EN+
Sbjct: 1 MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + K+ + FIG+LQ+ KV I+ I ++ R A + + + +
Sbjct: 61 LLH-KLDVLKDSEPVWHFIGTLQTRKVKAIIDHVSYIHSLDRLSLADEIQ---KRAKKPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + FV + + GLM + P + + F LL
Sbjct: 117 DCFVQVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMAPFTDDEKAIRSCFRLL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ E + ++LSMGM+ D+ +A+ GAT VRIGS + G
Sbjct: 177 RELRDEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVGN 224
>gi|241766135|ref|ZP_04764043.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
gi|241363818|gb|EER59153.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
Length = 239
Score = 161 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ N LQ + +I + A R DSVSL+AVSK + + A++ GQ F EN +Q
Sbjct: 3 TIANNLQQVQARIAQACAAAGRDPDSVSLLAVSKTFGADAVLEAVAAGQRAFGENYIQEG 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ +Q IG +QSNK + FD TV R K A LS +
Sbjct: 63 VDKIAAVRAALPAAALQWHCIGPIQSNKTRLVAEHFDWAHTVDRLKIAERLSAQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L + IQVN K+G+ P + D V + +L V GLM IP P+ +
Sbjct: 123 ALQLCIQVNVDAGPTKAGVPPAEVLDLVCAVAKLPRLQVRGLMSIPDPAPSHEAQRAVHE 182
Query: 176 LLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + K LSMGMT D + AI +G+T VR+G+GIFG R T
Sbjct: 183 SARRLFEQIRQTGAPGLEKFDTLSMGMTADLDAAIQAGSTMVRVGTGIFGGRSRPT 238
>gi|157363792|ref|YP_001470559.1| hypothetical protein Tlet_0929 [Thermotoga lettingae TMO]
gi|157314396|gb|ABV33495.1| conserved hypothetical protein [Thermotoga lettingae TMO]
Length = 223
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 11/223 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL L K+KI+ S + R DSV L+AV+K D IR L G AEN Q+
Sbjct: 1 MSLYENLMKVKKKIDQSTAKSGRDPDSVVLIAVTKEADMDSIRQILEFGIKNLAENYAQK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + FIG +Q+NK+ IV + I +V RE+ ++ + +
Sbjct: 61 LVRKSEQFT---NAIWHFIGRIQTNKLKYIVPRCEYIHSVWREEELKEINKIAERFQKIQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+VN E K+G+ P + + + + + GLM + P + NP+ ++ S++
Sbjct: 118 KILIEVNVSGEPTKAGVDPIKLEKLLKAASSLSAVQIVGLMTMAPYVENPQEVRWIFSKL 177
Query: 181 A--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L LSMGM+ DFE+A+ GAT +RIG IF
Sbjct: 178 RQLRDIYRKDFPSLEHLSMGMSNDFEVALEEGATMIRIGRAIF 220
>gi|218437552|ref|YP_002375881.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
gi|218170280|gb|ACK69013.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
Length = 219
Score = 161 bits (406), Expect = 9e-38, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +Q + V L+AV+K V +R A G F EN+LQE
Sbjct: 1 MTIAQRINQIRQHL----------PSHVRLIAVTKQVSPDIMRQAYQAGIRDFGENRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +++ F I +V L ++ S
Sbjct: 51 ALSKQEHLQDLPDICWHFIGHLQTNKAKKVLDSFQWIHSVDSLSLLQRLEGYSVELSNPP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V +QV + K G + + Q Q+ ++GLM I P +
Sbjct: 111 QVCLQVKVLPDPNKYGWTIPELLQDLPRIEQCTQVKIQGLMTILPWGLDETETLKAFETT 170
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A+E L +LSMGM+ D+ LAI +GAT +R+G+ +FGER
Sbjct: 171 RDLAQELNERSQLQLRELSMGMSGDYHLAIKAGATMIRLGTILFGER 217
>gi|255554799|ref|XP_002518437.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223542282|gb|EEF43824.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 270
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ Q+++ +A + R + +VAVSK I G F EN +QE +
Sbjct: 41 LRSVLQRVQQAAERSGRGAQQIRVVAVSKTKPVSLIHQVYDAGHRCFGENYVQELVE--K 98
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IKQSRFLPV 122
+ D++ FIG+LQSNKV +++ + V + + + L V
Sbjct: 99 APQLPEDIEWHFIGNLQSNKVKPLLAAVPNLAVVESVDDQKIANHLDRAVGNLGRKPLKV 158
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P + + + L GLM I + P +
Sbjct: 159 LVQVNTSGEESKYGVEPAGCVELAKHVTQSCPNLEFCGLMTIGMLDYSSTPENFKTLANC 218
Query: 178 -SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SE+ + + + LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 219 RSEVCKTLGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPREYP 267
>gi|160896517|ref|YP_001562099.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160362101|gb|ABX33714.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 241
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 75/236 (31%), Positives = 113/236 (47%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ NKLQ ++I ++ A R SV L++VSK + +R A+ G+ F EN +QE
Sbjct: 3 TIENKLQQIHERIASACAQAGRASGSVQLLSVSKTFGADAVREAVLAGERSFGENYIQEG 62
Query: 62 KKKWIPLRKE-----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K +R +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VDKIAAVRAMGLPGGETLQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAERLSAQRPEG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQ+N K+G+ P Q + Q +L + G+M IP P +
Sbjct: 123 LAPLQVCIQLNVDGGETKAGVAPQQALELAAAIVQLPRLALRGVMSIPDDAPGFEAQREV 182
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + + +SMGMT D E A+A+G+T VR+GSGIFG+R
Sbjct: 183 HARATTVFEQIRASGLPGLERFDTVSMGMTGDLEAAVAAGSTMVRVGSGIFGQRNY 238
>gi|225444313|ref|XP_002263767.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 245
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 102/232 (43%), Gaps = 16/232 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ +++ +A + R + +VAVSK IR G F EN +QE +
Sbjct: 11 AAALRSVLHRVQQAAERSGRGPHQIRVVAVSKTKSVSLIREVYDSGHRCFGENYVQEIIE 70
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL----LSLEMIKQSRF 119
K D++ FIG+LQSNKV +++ + V + + +
Sbjct: 71 KAPQ--LPEDIEWHFIGNLQSNKVKPLLTGVPNLAVVETVDDEKIADRLDRMVATIGRKP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V +QVNT E KSG+ P + + L GLM I P +
Sbjct: 129 LKVMVQVNTSGEESKSGVDPAACVELVKHVALGCPNLEFGGLMTIGMLDYTSTPENFKTL 188
Query: 178 ----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SE+ + +T+ LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 189 ANCRSEVCKSLGITEEQCELSMGMSGDFELAIEMGSTNVRIGSTIFGAREYP 240
>gi|255577143|ref|XP_002529455.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223531071|gb|EEF32921.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 245
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 105/229 (45%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++ +A A R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVMVRVRQAAERAGRRPESVRIVAVSKTKPVSLIRHVYDAGHRCFGENYVQEVVDKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
D++ FIG LQSNKV +++ + V + ++ L V
Sbjct: 74 Q--LPEDIEWHFIGHLQSNKVKTLLAGVPNLAMVQGVDNEKVANVLDRVVSTLGRNPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPKPHFYLLS-- 178
++QVNT E KSGI P+ + + L + GLM I P + +F LS
Sbjct: 132 FVQVNTSGEASKSGIEPSSCVALAEHVKLRCPNLVLSGLMTIGMPDYTSTPENFRKLSNC 191
Query: 179 --EIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + + +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RLEVCKALGMAEDHCELSMGMSGDFEQAIEMGSTNVRVGSTIFGPREYP 240
>gi|159463278|ref|XP_001689869.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283857|gb|EDP09607.1| predicted protein [Chlamydomonas reinhardtii]
Length = 251
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/236 (28%), Positives = 108/236 (45%), Gaps = 18/236 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +++ + A R V LVAVSK ++ ++ A GQ +F EN +Q
Sbjct: 6 IAAALQDVLSRMKQATERANRT-HPVRLVAVSKTKPAEALQEAYDAGQRVFGENYVQARC 64
Query: 63 -KKWIPLRKEWDVQLRFIGSLQSNKVS------EIVSLFDVIETVSREKTASLLSLEMIK 115
DVQ FIG LQSNKV +++ + +++ + +
Sbjct: 65 EMLDKAPALPGDVQWHFIGHLQSNKVKAVLEGVPNLAMVETVDSAKLADKLNKTLETVSG 124
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHF 174
++ L V +QVNT E K G+ P + + +L + GLM I + +P
Sbjct: 125 RTAPLAVMVQVNTSGEESKYGVEPTECVSLAKHIAQNCPKLRLAGLMTIGMPDYSSRPEC 184
Query: 175 YLL-----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ +A E L +LSMGM+ DFE AI G+T++R+GS IFG R +
Sbjct: 185 FICLSGCRDAVATELGLRPEQLELSMGMSGDFEQAIEMGSTNIRVGSTIFGAREYK 240
>gi|329121443|ref|ZP_08250067.1| cell division protein YlmE [Dialister micraerophilus DSM 19965]
gi|327469358|gb|EGF14828.1| cell division protein YlmE [Dialister micraerophilus DSM 19965]
Length = 233
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ ++++E++ + +D V+LVAV+K ++ A+ CG EN++Q
Sbjct: 1 MSEIEKRIADVRKRMEDAKKRSPYKQD-VTLVAVTKFHSLAEMEEAIDCGITYVGENRVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++K+ + V G LQ NKV +++++ +I + ++ +
Sbjct: 60 EMEQKY--RLLQKPVHWNLQGHLQKNKVKKVIAMDCLIHSGDSLSILKEINKRAAAIGKV 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--------- 170
V ++ N E K G+ P + ++ V L ++ + V GLMC+ P G
Sbjct: 118 QDVLLEFNISGEETKHGLKPEEFEEAVQLAKELPNICVRGLMCMAPEEGEDVIRPVFKKG 177
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L E + +++ LSMGM+ DFE+AI G+ VR+G+ IFG R
Sbjct: 178 HEMWEKLKEYFPKGQISILSMGMSGDFEIAIEEGSNMVRVGTAIFGARDY 227
>gi|295691575|ref|YP_003595268.1| alanine racemase domain-containing protein [Caulobacter segnis ATCC
21756]
gi|295433478|gb|ADG12650.1| alanine racemase domain protein [Caulobacter segnis ATCC 21756]
Length = 217
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 106/220 (48%), Positives = 136/220 (61%), Gaps = 4/220 (1%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L + +I + A R SV+LVAVSK + I L GQ +F EN++QE
Sbjct: 1 MS--QALADIQSRIAAAEARAGRAPGSVTLVAVSKTQPWEHIAPVLDAGQKVFGENRVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A ++W R+ ++LR IG LQ+NK E V+ FDVIETV REK A +L+ E+ + R
Sbjct: 59 AMERWGQRRE--GLELRLIGPLQTNKAREAVAFFDVIETVDREKLARVLAEEIQRSGRAP 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Y+QVNTG E QK+GI P + F+ CRQ Y L VEGLMCIPP +P PHF L I
Sbjct: 117 RLYVQVNTGEEPQKAGIAPGEADTFIAACRQTYGLAVEGLMCIPPFDTDPAPHFAQLRAI 176
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A + KLSMGM+ DFE+AI GATSVR+GS +FG R
Sbjct: 177 AERNGVEKLSMGMSDDFEIAIVEGATSVRVGSALFGSRNY 216
>gi|302763195|ref|XP_002965019.1| hypothetical protein SELMODRAFT_83798 [Selaginella moellendorffii]
gi|300167252|gb|EFJ33857.1| hypothetical protein SELMODRAFT_83798 [Selaginella moellendorffii]
Length = 244
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 100/229 (43%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++ +A + R V++VAVSK IR G F EN QE +K
Sbjct: 15 LRSVYERVRVAAERSGRSASQVNVVAVSKTKPVSLIREVYDAGHRHFGENYAQEFIEKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
D++ FIG LQSNK +V+ + V + SL Q L V
Sbjct: 75 Q--LPSDIRWHFIGHLQSNKAKSLVANVPQLYMVEGIDNFKVASLLDRAVSLLQRNPLKV 132
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLSE 179
+QVNT E KSG+ P+ + + L GLM + P+ LL+
Sbjct: 133 LVQVNTSGEESKSGVEPSACVELAKQIKADCPNLEFSGLMTIGMQDYTSTPENFKALLNC 192
Query: 180 IARECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
CK +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 193 REDVCKALEIPQSSCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYP 241
>gi|30682530|ref|NP_849649.1| alanine racemase family protein [Arabidopsis thaliana]
gi|3157934|gb|AAC17617.1| Similar to hypothetical protein F09E5.8 gb|U37429 from C. elegans.
ESTs gb|T42019 and gb|N97000 come from this gene
[Arabidopsis thaliana]
gi|332190697|gb|AEE28818.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 255
Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ Q++ +A A R D + +VAVSK IR GQ F EN +QE +
Sbjct: 27 LRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIE--K 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IKQSRFLPV 122
+ D++ FIG+LQSNKV ++S + TV + ++ + L V
Sbjct: 85 APQLPEDIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKV 144
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
++QVNT E K G+ P+ ++ L GLM I A P + L
Sbjct: 145 FVQVNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKC 204
Query: 178 -SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SE+ +E + + LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 205 RSEVCKELGIPEEQCELSMGMSGDFELAIELGSTNVRIGSTIFGAREYP 253
>gi|282889722|ref|ZP_06298261.1| hypothetical protein pah_c004o075 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500296|gb|EFB42576.1| hypothetical protein pah_c004o075 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 225
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 105/223 (47%), Gaps = 11/223 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + K +IE A R D +SL+AVSK + I+ G F E+++QEA
Sbjct: 3 SVQDNYLKIKVRIEEYARKYGRASDEISLIAVSKTYPVESIQTVYEAGCRNFGESRVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ R D+Q IGSLQ NKVS+IV F +I +V + A +S +K
Sbjct: 63 LQ--KQPRLPSDIQWHLIGSLQLNKVSKIVGKFTLIHSVDSFELAKKISETSLKLGVQTS 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLS 178
+ +QVNT E+ K G + + VEGLM + P + + F L
Sbjct: 121 ILLQVNTSGELTKHGWSGEACQKDYEHILSLSGICVEGLMTMAPFSNDEQAVRNCFQKLR 180
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L LSMGM+ DF AIA GAT +RIG+ IF
Sbjct: 181 LLKEQLSISSGRLLPHLSMGMSNDFGWAIAEGATLLRIGTAIF 223
>gi|121997736|ref|YP_001002523.1| alanine racemase domain-containing protein [Halorhodospira
halophila SL1]
gi|121589141|gb|ABM61721.1| alanine racemase domain protein [Halorhodospira halophila SL1]
Length = 228
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L ++++ + RP SV ++AVSK + +R A + GQ F EN LQ
Sbjct: 1 MSEIATRLAAVQERVRAAEADCGRPAGSVQILAVSKRHSAAAMRAAYTAGQHAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L ++ FIG +QSNK E+ FD + TV R K A LS +
Sbjct: 61 EATEKQAELADLA-LEWHFIGGVQSNKTREVAERFDWVHTVDRAKIARRLSEQRPPDHPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E QK+G +P+ D + QL + GLM +P L+
Sbjct: 120 LNVCLQVNISEEPQKAGCLPDDVGDLAAAVDRLPQLRLRGLMALPAPAEGFDAQRRPLAR 179
Query: 180 IAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 180 LRELQQALREGGHHGLDTLSMGMSADLEAAIAEGATIVRIGTAIFGPR 227
>gi|313891355|ref|ZP_07824971.1| pyridoxal phosphate enzyme, YggS family [Dialister microaerophilus
UPII 345-E]
gi|313120130|gb|EFR43306.1| pyridoxal phosphate enzyme, YggS family [Dialister microaerophilus
UPII 345-E]
Length = 233
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ ++++E++ + +D V+LVAV+K ++ A+ CG EN++Q
Sbjct: 1 MSEIEKRIADVRKRMEDAKKRSPYKQD-VTLVAVTKFHSLAEMEEAIDCGITYVGENRVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++K+ + V G LQ NKV +++++ +I + ++ +
Sbjct: 60 EMEQKY--RLLQKPVHWNLQGHLQKNKVKKVIAMDCLIHSGDSLSILKEINKRAAAIGKV 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--------- 170
V ++ N E K G+ P + ++ V L ++ + V GLMC+ P G
Sbjct: 118 QDVLLEFNISGEETKHGLKPEEFEEAVQLAKELPNICVRGLMCMAPEEGEDVIRPVFKKG 177
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L E + +++ LSMGM+ DFE+AI G+ VR+G+ IFG R
Sbjct: 178 HEMWEKLKEYFPKGQVSILSMGMSGDFEIAIEEGSNMVRVGTAIFGARDY 227
>gi|84495987|ref|ZP_00994841.1| hypothetical protein JNB_00670 [Janibacter sp. HTCC2649]
gi|84382755|gb|EAP98636.1| hypothetical protein JNB_00670 [Janibacter sp. HTCC2649]
Length = 232
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L ++I+ +A+ A R + LV V+K + + + G ENK QEA
Sbjct: 7 DLAANLARVHERIDGAAMAAGRDAGDIDLVVVTKYFPASDVDLLADLGVRHIGENKDQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + ++ + FIG LQSNKV+ + + DV+++V R K + L + R L
Sbjct: 67 SAKVADLTRRDELTVHFIGQLQSNKVAHVAAYADVVQSVDRAKIVTGLDRAAERHGRHLD 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QV + G+ P + + L + L++ G+M + P G+P+ F L E+A
Sbjct: 127 VLLQVALDGSGSRGGVAPEEARALADLVAESACLSLRGVMAVAPLEGDPRRAFARLRELA 186
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ T +S GM+ D E A+ GAT +R+GS I G RP
Sbjct: 187 DGIRAGHSDATWISAGMSGDLEEAVLEGATHLRVGSAILGSRP 229
>gi|311068059|ref|YP_003972982.1| hypothetical protein BATR1942_05485 [Bacillus atrophaeus 1942]
gi|310868576|gb|ADP32051.1| hypothetical protein BATR1942_05485 [Bacillus atrophaeus 1942]
Length = 230
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVIDNLRHINERINEACNRSGRCSDEVTIIAVTKYVSAERAQEAVDAGISSLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + + FIGSLQS KV +V+ I ++ R A+ + + + +
Sbjct: 61 LLR--KQDIVKGNPDWHFIGSLQSRKVKAVVNNVSHIHSLDRLSLANEIE---KRATGPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVNT E K G+ + V + V+GLM + P + + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKQEEVIPLVQELAGFEHIIVDGLMTMAPLTEDTEKIRSCFRAL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLKQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGN 223
>gi|293371408|ref|ZP_06617839.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CMC
3f]
gi|292633605|gb|EFF52163.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CMC
3f]
Length = 222
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFY--- 175
+Q++ E K G P + K+ + K + + GLM + + +
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNAGEWKELTHVRICGLMGMASNTDCIEQINWEFG 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLNRLFNEIKTTWFIHSDTFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGERIY 222
>gi|262375723|ref|ZP_06068955.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309326|gb|EEY90457.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 234
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 103/230 (44%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L +IE + + A R D+V L+AVSK S + GQ F EN LQ
Sbjct: 6 MNMLQQSRNQVLVQIETACVEAGREADAVQLLAVSKTQPSSVLAEMYQAGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L++ +++ FIG +Q NK + F + V R A LS +
Sbjct: 66 EALEKITALKEL-EIEWHFIGHVQRNKTKALAENFAWVHGVDRLIIAERLSNQRGDDQPA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN + K G P + D V Q + + GLM IP +
Sbjct: 125 LNICIQVNIDGQDTKDGCQPAEVADLVAQISQLPNVRLRGLMVIPAPNNPQSFGDAKV-- 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D AIA+G+T VR+G+ +FG RP +
Sbjct: 183 LFDAVKVQHAHPEDWDTLSMGMSADMTEAIAAGSTMVRVGTALFGARPKK 232
>gi|116782168|gb|ABK22393.1| unknown [Picea sitchensis]
Length = 244
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++++ +A + R V +VAVSK IR G F EN +QE K
Sbjct: 15 LRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----KQSRFLPV 122
D+Q FIG LQSNK +++ + V ++ + + + L V
Sbjct: 75 E--LPTDIQWHFIGHLQSNKAKAVIAGVPNLYMVESVDSSKVANHLDRAVSSIGRKPLKV 132
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QVNT E K G+ P++ + + Q L GLM I + +P +
Sbjct: 133 LVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEALSGC 192
Query: 179 --EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + +++ LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 193 RIEVCKALGISEDQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYP 241
>gi|182417963|ref|ZP_02949272.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237667346|ref|ZP_04527330.1| pyridoxal phosphate enzyme, YggS family [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378134|gb|EDT75669.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237655694|gb|EEP53250.1| pyridoxal phosphate enzyme, YggS family [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 221
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K+ I D V L+AVSK + + A +CG F ENK+QE
Sbjct: 1 MGIKENIEYLKKSI----------PDDVMLLAVSKTKPLEYLEEAYNCGMRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV+ IG LQ+NKV +V +I ++ +++ K
Sbjct: 51 LVDKYENFHK--DVRWHLIGHLQTNKVKYLVGKVFLIHSLDSVNLLNVIERVFEKADLTA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
IQ+N G E K+GI+ ++F+ + ++V+G+M I P + + +F
Sbjct: 109 ETLIQINIGREDSKTGILEEDLEEFLQEIEKCKHVSVKGIMVIIPQGDEESNRNYFRKTK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I + K + LSMGMT D+E AI G+T VRIG+GIFGER T
Sbjct: 169 QIFEDLKKRKFNNINMQILSMGMTHDYETAIEEGSTLVRIGTGIFGERNYIT 220
>gi|82703845|ref|YP_413411.1| hypothetical protein Nmul_A2732 [Nitrosospira multiformis ATCC
25196]
gi|82411910|gb|ABB76019.1| Protein of unknown function UPF0001 [Nitrosospira multiformis ATCC
25196]
Length = 244
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + I A A R ++L+A SK ++++R A GQ +F EN LQEA
Sbjct: 7 TVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGENYLQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ ++ FIG +QSNK I F + +V R+K A LS + + L
Sbjct: 67 LVKIDALKDL-PIEWHFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEALPPLQ 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
+ +QVN E KSG+ P + D + +L + G+M IP + F +L
Sbjct: 126 ICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLRLRGVMAIPELTKFTALQRSQFRMLK 185
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E + K + +SMGM+ D ELAI GAT VRIG+ IFG R
Sbjct: 186 EAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRYP 233
>gi|317121717|ref|YP_004101720.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
12885]
gi|315591697|gb|ADU50993.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
12885]
Length = 230
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++I +A A R ++LVAVSK V +R A + G F EN+ QE
Sbjct: 1 MTIAERVAAVRERIAAAAARAGRDPGEITLVAVSKTVPVAAMREAYAAGIRHFGENRAQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K+ DV F+G LQ+NKV I ++ ++ R A + + R L
Sbjct: 61 ARDKFPAFGD--DVHWHFVGRLQTNKVKYIARHCHLLHSLDRLALAQEVDRRASRCGRVL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P ++VN E K+G+ P + F+ L V GLM + P NP +P F L
Sbjct: 119 PCLVEVNVAGEATKAGLPPEKVIPFLHQVAGWPGLRVVGLMTVAPRADNPEEVRPVFRRL 178
Query: 178 SEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A E +L LSMGMT DFE+A+ GAT VRIG IFGER
Sbjct: 179 RELAEEAARQCRGLPGIELRHLSMGMTDDFEVAVEEGATLVRIGRAIFGER 229
>gi|298208470|ref|YP_003716649.1| hypothetical protein CA2559_09518 [Croceibacter atlanticus
HTCC2559]
gi|83848393|gb|EAP86262.1| hypothetical protein CA2559_09518 [Croceibacter atlanticus
HTCC2559]
Length = 219
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +++ +K ++ + V LVAVSK + + A + GQ +F ENK+QE
Sbjct: 1 MNISEQIKYYKSQL----------PEDVVLVAVSKTKPEEDLLEAYNAGQRVFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW D++ IG +QSNKV + +++ + R K L+ + K R +
Sbjct: 51 MTEKWE--NLPKDIEWHMIGHVQSNKVKYMAEYVNLVHGIDRLKLIKELNKQAQKHDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ N + + +NV G M + + +
Sbjct: 109 NCLLQIKIAEEDTKFGMDINDAEAILNKDFKKTYPNVNVVGFMGMATFTNDEEQVQREFK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L LSMGM+ D++LAI G+T VRIGS IFGER
Sbjct: 169 TLKSHFDRLSKDHNSLKILSMGMSGDYKLAITEGSTMVRIGSAIFGERNYN 219
>gi|146328880|ref|YP_001209130.1| alanine racemase domain-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232350|gb|ABQ13328.1| alanine racemase domain protein [Dichelobacter nodosus VCS1703A]
Length = 264
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 9/221 (4%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+Q+I +A +R +S+ L+ VSK V+++++R+A SCG I ENK+QEA KW
Sbjct: 38 EIRQRIVRAAEECQRDPNSIRLLPVSKTVNAQRLRLAHSCGMTILGENKVQEAYDKWQE- 96
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++ D++ IG LQ+NK + + + K A L + +++R L V+IQVNT
Sbjct: 97 LQDTDLKWAIIGHLQTNKAKYVARFASEFQALDSLKIAEELDKRLQQENRQLDVFIQVNT 156
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK 185
E QK GI P +DFV L + GLM + + F L ++ + +
Sbjct: 157 SNEPQKYGISPENAEDFVRQLEAFRSLRLRGLMTLAIFSSDKDTVRQCFIRLRQLRDQLQ 216
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +LSMGM+ DFELAIA GAT+VR+G +FG R
Sbjct: 217 QINPDIAELSMGMSGDFELAIAEGATTVRVGQALFGARQQP 257
>gi|182626136|ref|ZP_02953896.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens D
str. JGS1721]
gi|177908573|gb|EDT71098.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens D
str. JGS1721]
Length = 219
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFYQ--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHF 174
IQVN G E QK GI+ + + + +NV G+M I P
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|167771414|ref|ZP_02443467.1| hypothetical protein ANACOL_02780 [Anaerotruncus colihominis DSM
17241]
gi|167666054|gb|EDS10184.1| hypothetical protein ANACOL_02780 [Anaerotruncus colihominis DSM
17241]
Length = 242
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 12/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ ++ I + L R V L+AV+K V+++++ A+ G + EN+ QE
Sbjct: 9 LSIAQSVEQILDNIAKTCALCGRDASDVQLMAVTKTVEAQRVNEAIHAGVRLLGENRAQE 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V + FIG LQ+NKV +IV +I+++ A + + K + +
Sbjct: 69 LLAKYDDYEKD-GVDIHFIGHLQTNKVRQIVDKVTMIQSLDSVALAQEIERQCEKHDKKM 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---L 177
++VN G E+ KSG+ P++ DF+ ++ V GLM IPP G +
Sbjct: 128 NCLVEVNIGSELSKSGVAPDRLSDFLGELSGFGRICVRGLMAIPPVSGTDAEKERYFSGM 187
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+ LAI G+ VR+G+ +FG R
Sbjct: 188 HKLFVDIRDKKLDNINMDFLSMGMSDDYLLAIKHGSNLVRLGTRLFGHRDY 238
>gi|309781317|ref|ZP_07676053.1| pyridoxal phosphate enzyme, YggS family [Ralstonia sp. 5_7_47FAA]
gi|308919730|gb|EFP65391.1| pyridoxal phosphate enzyme, YggS family [Ralstonia sp. 5_7_47FAA]
Length = 238
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R V+L+AVSK D+ IR A + GQ +F EN +Q
Sbjct: 1 MSAIVANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAIRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRTGIDPIRWHFIGPLQSNKTRAVAEQFDWVHSVDRLKIAERLSAQRPD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPH 173
L V +++N + K G++P+ + + +L + GLM +P +P
Sbjct: 121 TLPPLQVCLEINISRQASKHGLLPDFDEVLAVAQAVSALPRLQLRGLMAVPEPSDDPAAQ 180
Query: 174 FYLLSEI---ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ A + L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RKPFADLCALANRLREAGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGARHY 235
>gi|329896504|ref|ZP_08271562.1| hypothetical protein IMCC3088_2174 [gamma proteobacterium IMCC3088]
gi|328921721|gb|EGG29094.1| hypothetical protein IMCC3088_2174 [gamma proteobacterium IMCC3088]
Length = 231
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +IE +A LA R D ++L+AVSK ++ I A +CG F EN LQEA
Sbjct: 5 TIASQISKVLTRIEGAASLASRRSDEITLIAVSKTKPAEAIEAAAACGLQHFGENYLQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K E D+ FIG +QSNK I FD + +V R K A LS + L
Sbjct: 65 LEKI-ETLHELDLTWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLGPLN 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ +QVN E KSG+ +Q + + + G+M IP +P ++
Sbjct: 124 ICLQVNISNEDTKSGVSADQAPELAKAITTLPNIRLRGVMTIPKPSDDPAEQAAAFEKVV 183
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L LSMGM++D E AIA+G+T VRIG+ IFG R
Sbjct: 184 TLFNTLRHTNPELDILSMGMSQDLEAAIAAGSTMVRIGTDIFGARN 229
>gi|255527755|ref|ZP_05394608.1| alanine racemase domain protein [Clostridium carboxidivorans P7]
gi|296186667|ref|ZP_06855069.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|296187056|ref|ZP_06855455.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|255508542|gb|EET84929.1| alanine racemase domain protein [Clostridium carboxidivorans P7]
gi|296048343|gb|EFG87778.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|296048704|gb|EFG88136.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
Length = 220
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +++ + IE V+L+AVSK ++I+ G F ENK+QE
Sbjct: 1 MSIEENVKMIRNTIEK----------DVTLIAVSKTKPVEEIKKVYDIGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ IG LQ NKV IV +I+++ + + +
Sbjct: 51 LIDKYDK--LPKDIKWHLIGHLQRNKVKYIVGKVHLIQSLDSIRLLQEIDKHYSANNEIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
IQ+N G E K+G++ + + + C + V+GLM I P + + +F +
Sbjct: 109 NTLIQINIGREESKTGVLLEKLDELLQQCENCNNVKVKGLMAIVPQATEESCRCYFKKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+I + K + LSMGM+ D+ +A+ G+ +R+G GIFG+R
Sbjct: 169 DIFEDLKKKSFKNIQMDILSMGMSGDYSMALQEGSNMIRVGQGIFGKRNYN 219
>gi|254414846|ref|ZP_05028610.1| conserved hypothetical protein TIGR00044 [Microcoleus
chthonoplastes PCC 7420]
gi|196178335|gb|EDX73335.1| conserved hypothetical protein TIGR00044 [Microcoleus
chthonoplastes PCC 7420]
Length = 223
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +Q++ V L+AV+K V + IR A G F E+++QEA
Sbjct: 4 SITERIAQIRQQL----------PPDVRLIAVTKRVSVEAIREAYQAGVRDFGESQVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ IG LQSNK + ++ F I + K A L+ + +
Sbjct: 54 AAKQDELQDLPDITWHLIGHLQSNKAKKALTQFQWIHSCDSLKLAQRLNQLACELAVSPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLS 178
+ +QV + K G + + + Q L ++GLM IPP F
Sbjct: 114 ICLQVKIMPDPHKYGWTIPELLEALPELDQCKALQIQGLMTIPPLGLSRQETLGVFERTR 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A E ++ +LSMGM+ D+ LAI +GAT VR+G IFGER
Sbjct: 174 DLANEIGQQNWSNLRMHQLSMGMSEDYALAIQAGATMVRLGRIIFGER 221
>gi|110798840|ref|YP_696537.1| hypothetical protein CPF_2108 [Clostridium perfringens ATCC 13124]
gi|168206092|ref|ZP_02632097.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens E
str. JGS1987]
gi|168210783|ref|ZP_02636408.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens B
str. ATCC 3626]
gi|168215212|ref|ZP_02640837.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
CPE str. F4969]
gi|168215482|ref|ZP_02641107.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
NCTC 8239]
gi|110673487|gb|ABG82474.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
ATCC 13124]
gi|170662426|gb|EDT15109.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens E
str. JGS1987]
gi|170711154|gb|EDT23336.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens B
str. ATCC 3626]
gi|170713382|gb|EDT25564.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
CPE str. F4969]
gi|182382413|gb|EDT79892.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
NCTC 8239]
Length = 219
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFHQ--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHF 174
IQVN G E QK GI+ + + + +NV G+M I P
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|302790652|ref|XP_002977093.1| hypothetical protein SELMODRAFT_106172 [Selaginella moellendorffii]
gi|300155069|gb|EFJ21702.1| hypothetical protein SELMODRAFT_106172 [Selaginella moellendorffii]
Length = 244
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 100/229 (43%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++ +A + R V++VAVSK IR G F EN +QE
Sbjct: 15 LRSVYERVRVAAERSGRSASQVNVVAVSKTKPVSLIREVYDAGHRHFGENYVQEFID--K 72
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
+ D++ FIG LQSNK +V+ + V + SL Q L V
Sbjct: 73 APQLPSDIRWHFIGHLQSNKAKSLVANVPQLYMVEGIDNFKVASLLDRAVSLLQRNPLKV 132
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E KSG+ P+ + + L GLM I P +
Sbjct: 133 LVQVNTSGEESKSGVEPSACVELAKQIKADCPNLEFSGLMTIGMQDYTSTPENFKALVNC 192
Query: 178 -SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + ++ +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 193 REDVCKALEIPQSSCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYP 241
>gi|110802818|ref|YP_699137.1| hypothetical protein CPR_1822 [Clostridium perfringens SM101]
gi|110683319|gb|ABG86689.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
SM101]
Length = 219
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTKKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K DV+ IG LQ+NKV IV +I+++ K + + ++
Sbjct: 51 IIRKFDEFHK--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGRHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHF 174
IQVN G E QK GI+ + + + +NV G+M I P
Sbjct: 109 NTLIQVNIGREEQKYGILEEKLDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|241888743|ref|ZP_04776050.1| pyridoxal phosphate enzyme, YggS family [Gemella haemolysans ATCC
10379]
gi|241864766|gb|EER69141.1| pyridoxal phosphate enzyme, YggS family [Gemella haemolysans ATCC
10379]
Length = 225
Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + ++I + A R D V L+AV+K V ++ AL G FAEN+ Q
Sbjct: 1 MNVRENFETITREIAETCKQAGRNADEVKLIAVTKYVTDARVEEALEAGITDFAENRPQN 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++ D IGSLQ+ KV ++++ D + R+ A + K+ +
Sbjct: 61 YVERKGKYS---DKTWHLIGSLQTRKVRDVINEVDYFHALDRDSLAKEIEKRAEKE---I 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ + DF+ Q ++ V GLM + P + + + F L
Sbjct: 115 KCFVQVNVSGEESKHGLTSEEAIDFIRSLEQYSKIKVVGLMTMAPFVEDEEILRNCFRKL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ E K LSMGM+ D+++AI GAT +R+G+ + G
Sbjct: 175 RQLRDEVKGLDLPYAPCEFLSMGMSNDYKIAIEEGATHIRVGTALVG 221
>gi|325954051|ref|YP_004237711.1| hypothetical protein Weevi_0414 [Weeksella virosa DSM 16922]
gi|323436669|gb|ADX67133.1| protein of unknown function UPF0001 [Weeksella virosa DSM 16922]
Length = 213
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 21/225 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ LQ K+ + ++V+LVAVSK ++I A S GQ +F ENK+QE
Sbjct: 1 MTIAKNLQTIKKTL----------PENVTLVAVSKTHSIEEILEAYSAGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ IG LQ NKV + +I V + ++ + K +R +
Sbjct: 51 LTQKQE--LLPKDIEWHMIGHLQRNKVKYLAPFVSLIHGVDSLRLLVEINKQAQKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V +Q E K G+ + ++ + Q+ + + GLM + +
Sbjct: 109 KVLLQKYIAEEESKFGMDAEEIEEILSNHAQELSNVEIVGLMGMASFTDQYEIVREEFRT 168
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + KLT LSMGM+ D+ +AI G+T VRIGS IFG
Sbjct: 169 LKKTFDRLSKNYPKLTILSMGMSGDYPIAIEEGSTMVRIGSAIFG 213
>gi|150016464|ref|YP_001308718.1| alanine racemase domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149902929|gb|ABR33762.1| alanine racemase domain protein [Clostridium beijerinckii NCIMB
8052]
Length = 226
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 111/231 (48%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ + KI + V+L+AVSK + + A G F ENK+QE
Sbjct: 1 MGIKQNIEELRSKI----------PEQVTLLAVSKTKPLEALEDAYMAGMRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + DV+ FIG LQSNKV +V +I ++S + + + K ++
Sbjct: 51 LVKKSENFHE--DVRWHFIGQLQSNKVKYLVDKVHLIHSLSSISLLNEIEKQFSKVNKVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
IQ+N G E KSGI+ +F+ + ++V+G+M I P + + +F
Sbjct: 109 NTLIQINIGREESKSGILEEDLYEFIEAIEKCKFVSVKGIMAIIPIGDEESNRKYFKKTK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+I E K + LSMGMT DF AI G+ VRIG+GIFGER
Sbjct: 169 KIFDELKEKNYTNISMKILSMGMTHDFMTAIEEGSNLVRIGTGIFGERNYN 219
>gi|89070621|ref|ZP_01157901.1| alanine racemase domain protein [Oceanicola granulosus HTCC2516]
gi|89043768|gb|EAR49970.1| alanine racemase domain protein [Oceanicola granulosus HTCC2516]
Length = 216
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 91/220 (41%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS + +I + A RP +V L+AVSK+ ++ L G +F EN++QE
Sbjct: 1 MS----YDDIRARIAAAESAAGRPAGAVELIAVSKLQPESRVADVLEAGHRLFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R ++ V + +G LQ+NK + + LF+ I ++ R K A L+ + R
Sbjct: 57 AAGKWPDFRAQFEGVAVHLLGPLQTNKARQALELFEAIHSLDRPKLAGTLARLAQETGRC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+GI+P + F+ CR L V GLMCIPP P HF LL++
Sbjct: 117 PDLFVQVNTGEEPQKAGILPGEADGFIAECRGM-DLPVRGLMCIPPVDEEPALHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
IA L LSMGM+ DFE AIA GAT VR+GS IFG RP
Sbjct: 176 IAARNGLEGLSMGMSGDFERAIAQGATHVRVGSAIFGARP 215
>gi|332654858|ref|ZP_08420600.1| pyridoxal phosphate enzyme, YggS family [Ruminococcaceae bacterium
D16]
gi|332516201|gb|EGJ45809.1| pyridoxal phosphate enzyme, YggS family [Ruminococcaceae bacterium
D16]
Length = 235
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++K+ +A A R ++L A +K+ IR A++ G + EN++QE
Sbjct: 1 MSIQEHVNAVREKMAAAAKAAGRDPGEITLCAATKVQTDDTIREAIAAGITVCGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
E Q+ FIG LQ+NKV+++V D+I +V E+ + + K
Sbjct: 61 LTAHLEANAYE-GAQVHFIGHLQTNKVNKVVGKVDLIHSVDSERLLRAIDRQADKLGLVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN E+ K G P++ + L + + + GLM IPP P P+F ++
Sbjct: 120 DVLLEVNVAGELSKGGCTPDEAWELAQLAQSLEHVRLRGLMAIPPIAQKPGDNTPYFSIM 179
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + K + LSMGM+ D+E AIA GAT VR+G+ +FG RP
Sbjct: 180 KKLYVDIKEKIAHNQDDMDCLSMGMSGDYEDAIAQGATLVRVGTALFGPRPP 231
>gi|255535460|ref|YP_003095831.1| FIG018583: protein of unknown function [Flavobacteriaceae bacterium
3519-10]
gi|255341656|gb|ACU07769.1| FIG018583: protein of unknown function [Flavobacteriaceae bacterium
3519-10]
Length = 234
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ + + R D V LVAVSK ++ ++ GQ IF ENK+QE
Sbjct: 16 LNIRKNYK----------EQSARIPDGVELVAVSKTHPAEVVQQVYDLGQRIFGENKVQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ IG LQ+NKV I D +++V EK + + + K R +
Sbjct: 66 LIAKYPQ--LPKDIKWHIIGHLQTNKVKYIAPFVDTVQSVDSEKILNEIDKQAAKCERKI 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
V +QV E K G+ Q + +VE GLM + + +
Sbjct: 124 NVLLQVKIAEEDTKYGLDAEQARTLYQNYLDGKYAHVEITGLMGMATFTDDQEQIRAEFR 183
Query: 179 EI---AREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ E KLT LSMGM+ D+ELAI GATSVR+GS IFG R
Sbjct: 184 KLKTLFDELSGARKLTTLSMGMSGDYELAIECGATSVRVGSAIFGHRQY 232
>gi|325275650|ref|ZP_08141548.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
gi|324099216|gb|EGB97164.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
Length = 231
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 77/224 (34%), Positives = 101/224 (45%), Gaps = 7/224 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + L +I ++A A R SV L+AVSK + IR + G F EN LQ
Sbjct: 1 MSTLADNLSAISARIASAAQAAGREPASVQLLAVSKTKPAAAIRELYAAGVCDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + + FIG +QSNK I FD + +V R K A LS +
Sbjct: 61 EALTKQQA-LGDLPLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG + L + GLM IP + +
Sbjct: 120 LNICLQVNVSGEDSKSGCAAAELPALAKAVAALPNLRLRGLMAIPEPTDDRAAQEAAFAS 179
Query: 180 IA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRNLLEQQHLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|313675306|ref|YP_004053302.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
gi|312942004|gb|ADR21194.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
Length = 220
Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 101/233 (43%), Gaps = 27/233 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K+ LVAVSK ++ + A GQ ENK+QE
Sbjct: 1 MSIAGNLSAVKE-----------SLGKCHLVAVSKTKPNEDLMAAYDAGQRALGENKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ IG LQ NKV I +I +V + ++ + K R +
Sbjct: 50 MTDKAE--VLPKDIEWHMIGHLQRNKVKYIAPFVHLIHSVDSVRLLKEINKQGKKIDRVI 107
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
PV +Q++ E K G+ ++ + ++ + V+GLM + + +
Sbjct: 108 PVLLQIHIAEEENKYGLDEDELHELLSSEAFKEMNHVAVQGLMGMATFTDDTEKIRREFK 167
Query: 179 EIAR------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + L +LSMGM+ D+E+AI G+T VRIGS IFGER
Sbjct: 168 SLKKLFDKTAEQYNDEKLNLKELSMGMSGDYEIAIEEGSTMVRIGSKIFGERN 220
>gi|160882640|ref|ZP_02063643.1| hypothetical protein BACOVA_00593 [Bacteroides ovatus ATCC 8483]
gi|237718405|ref|ZP_04548886.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260173862|ref|ZP_05760274.1| hypothetical protein BacD2_18472 [Bacteroides sp. D2]
gi|299149060|ref|ZP_07042122.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_23]
gi|315922125|ref|ZP_07918365.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156111955|gb|EDO13700.1| hypothetical protein BACOVA_00593 [Bacteroides ovatus ATCC 8483]
gi|229452338|gb|EEO58129.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298513821|gb|EFI37708.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_23]
gi|313696000|gb|EFS32835.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 222
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFY--- 175
+Q++ E K G P + K+ + K + + GLM + +
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNAGEWKELTHVRICGLMGMASNTDCIEQINREFG 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLNRLFNEIKTTWFIHSDTFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGERIY 222
>gi|227495939|ref|ZP_03926250.1| alanine racemase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834527|gb|EEH66910.1| alanine racemase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 251
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I+ +A A R V L+ V+K V ++R A + G ENK+QEAK
Sbjct: 17 ISANLAAIRTRIDAAAAAAGRSPSEVRLLPVTKTVPEDRLRAAFAAGVTEMGENKVQEAK 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + IG LQ+NK ++V+ + + A L + R L V
Sbjct: 77 RKSTEMADL-GIHWALIGHLQTNKAKDVVAFAHEFQALDSLHVAEALDRRLQAAGRSLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
Y+QVN+ E K G+ P+ F+ L V GLM + + F L+
Sbjct: 136 YVQVNSSGEESKFGLEPDAVTAFLAALPVYSSLRVRGLMTLAAHTDDRERVRECFRLMRR 195
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L LSMGM+ DFELAIA GAT VR+G+ IFG RP
Sbjct: 196 LRDAGREAGTVGDGL--LSMGMSGDFELAIAEGATCVRVGTAIFGARPTP 243
>gi|190573115|ref|YP_001970960.1| hypothetical protein Smlt1088 [Stenotrophomonas maltophilia K279a]
gi|190011037|emb|CAQ44646.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
Length = 225
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 72/221 (32%), Positives = 102/221 (46%), Gaps = 11/221 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +A A RP L+AVSK ++ + + GQ F EN +QEA K
Sbjct: 5 LPQILSNLHAAAEAAGRP--DPRLLAVSKTQPAESVAALAAQGQHAFGENYVQEALAKMQ 62
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ ++ IG LQSNK + S FD +++V R K + L+ L V IQV
Sbjct: 63 ALQHLA-LEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPAARGPLNVLIQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P + + L + GLM IP P + F + + +
Sbjct: 122 NIDDESSKHGCAPEEVDALAAAIAAEPTLRLRGLMAIPAPWPEAERRRDAFVRMRTLFQS 181
Query: 184 C-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 182 LAAQHAQIDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|317124653|ref|YP_004098765.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
gi|315588741|gb|ADU48038.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
Length = 241
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 9/226 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I + A R V+LV V+K + + + G ENK QEA
Sbjct: 13 LAGRLEAVRERINAACADAGRDPGEVTLVVVTKFFPASDVLLLHDLGVRAIGENKDQEAG 72
Query: 63 KK----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L D+++ F+G LQSNK + DV+ ++ R K L + R
Sbjct: 73 PKVAQVREALPPGSDLEVHFVGRLQSNKARHVAGYADVVHSLDRRKLLDGLDAGAFDRGR 132
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQV+ + + G +P + D Q+ L ++G+M + P +P F L
Sbjct: 133 PLGLLIQVSLDGDTSRGGALPEEVPDLGAAVAQRAGLVLKGVMAVAPLGADPDVAFASLR 192
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A + + +S GM+ D E A+ GAT +R+G+ I G RP
Sbjct: 193 RVATDLQAVHPTADWVSAGMSGDLEAAVRHGATHLRVGTAILGSRP 238
>gi|239826536|ref|YP_002949160.1| alanine racemase domain protein [Geobacillus sp. WCH70]
gi|239806829|gb|ACS23894.1| alanine racemase domain protein [Geobacillus sp. WCH70]
Length = 226
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + ++ IE + R + +VAV+K V K+ R AL G EN+
Sbjct: 2 MTVRDNLAIIRENIEAACQRVGRNPADIRIVAVTKYVSVKRAREALEAGITDLGENRDDG 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ + FIG+LQS KV I+ D I ++ R A + + ++ +
Sbjct: 62 LLKKYEA--LGAEPTWHFIGTLQSRKVKNIIDKVDYIHSLDRMSLAKEIE---KRATKRV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G+ + F+ + + V GLM + P + ++
Sbjct: 117 KCFVQVNVSGEATKHGLAKEEVIPFIQQLQDFSHIEVIGLMTMAPYTDDESILRTCFRQL 176
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 177 KLLQENVQALHIPNAPCTELSMGMSNDYVIAIEEGATFIRLGTSLVGK 224
>gi|313901905|ref|ZP_07835324.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
13965]
gi|313467846|gb|EFR63341.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
13965]
Length = 230
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + +I +A A R V+LVAVSK V +R A + G F EN+ QE
Sbjct: 1 MTIAERVAAVRDRIAAAAARAGRDPGEVTLVAVSKTVPVAAMREAYAAGIRDFGENRAQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K+ + DV+ F+G LQ+NKV I ++ ++ R A + + R L
Sbjct: 61 ARDKFPAFGE--DVRWHFVGRLQTNKVKYIARHCHLLHSLDRLALAQEVDRRAGRCGRVL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P ++VN E K+G+ P + F+ L V GLM + P +P +P F L
Sbjct: 119 PCLVEVNVAGEPTKAGLPPEKVVPFLQQVAGMKGLQVVGLMTVAPPTDDPERVRPVFRQL 178
Query: 178 SEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A E +L LSMGMT DFE+A+ GAT VRIG IFGER
Sbjct: 179 RQLAEEAARQCRGLPGIELRHLSMGMTDDFEVAVEEGATIVRIGRAIFGER 229
>gi|241664091|ref|YP_002982451.1| alanine racemase domain-containing protein [Ralstonia pickettii
12D]
gi|240866118|gb|ACS63779.1| alanine racemase domain protein [Ralstonia pickettii 12D]
Length = 238
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R V+L+AVSK D+ IR A + GQ +F EN +Q
Sbjct: 1 MSAIVANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAIRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K + ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGVAKIDALADLRKGTDPIRWHFIGPLQSNKTRAVAEQFDWVHSVDRLKIAERLSAQRPD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPH 173
L V +++N + K G++P+ + + +L + GLM +P +P
Sbjct: 121 TLPPLQVCLEINISRQASKHGLLPDFDEVLAVAQAVLALPRLQLRGLMAVPEPSDDPVAQ 180
Query: 174 FYLLSEIA------RECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RKPFADLRALAGRLREAGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGARHY 235
>gi|187779883|ref|ZP_02996356.1| hypothetical protein CLOSPO_03479 [Clostridium sporogenes ATCC
15579]
gi|187773508|gb|EDU37310.1| hypothetical protein CLOSPO_03479 [Clostridium sporogenes ATCC
15579]
Length = 225
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 22/232 (9%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + K+ + V+L+ VSK + I A G F ENK+
Sbjct: 1 MTLEIEGNINSVKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKV 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K +++ D++ IG LQ NK+ IV +I ++ + + + KQ++
Sbjct: 51 QELVDKIEYFKEKKDIRWHLIGHLQRNKIKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNK 110
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYL 176
V IQ+N G E K GI + + + + +GLM I P +F
Sbjct: 111 IANVLIQINIGKEESKYGIYKEDLGNMLDAIEKCENVKAKGLMAIIPKGSDEECAKYFRQ 170
Query: 177 LSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 MKEIFSTLQNKSFKNIEVKYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 222
>gi|154685954|ref|YP_001421115.1| YlmE [Bacillus amyloliquefaciens FZB42]
gi|154351805|gb|ABS73884.1| YlmE [Bacillus amyloliquefaciens FZB42]
Length = 230
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 16/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++L+ ++I + + R + V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVADQLRHINERINEACNRSGRSPEDVTVIAVTKYVSAERAQEAVDAGITSLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++ + FIGSLQS KV +V I ++ R A + + +
Sbjct: 61 LIHKQEVIKGS--PEWHFIGSLQSRKVKAVVDRVSYIHSLDRLSLAKEIE---KRAQHAV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVNT E K G+ + F+ + ++VEGLM + P + + ++
Sbjct: 116 RCFVQVNTSLEPSKHGLKTEEVIPFIRELSEFRNISVEGLMTMAPLTDDTETIRACFRQL 175
Query: 181 AR------ECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +LSMGM+ D+E+A+ GAT +RIGS + G P
Sbjct: 176 RDLRDQVQKLNQTNAPCRELSMGMSNDYEIAVEEGATFIRIGSSLVGNEP 225
>gi|260642854|ref|ZP_05417592.2| pyridoxal phosphate enzyme, YggS family [Bacteroides finegoldii DSM
17565]
gi|260620282|gb|EEX43153.1| pyridoxal phosphate enzyme, YggS family [Bacteroides finegoldii DSM
17565]
Length = 226
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 3 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQSNK+ ++ +I + K + ++ + K R +
Sbjct: 53 MTAKYES--LPKDIEWHFIGHLQSNKIKYMIPYVAMIHGIDTYKLLAEVNKQAGKAGRTV 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
+Q++ E K G P + ++ + + + + GLM + N + F
Sbjct: 111 NCLLQIHVAQEETKFGFSPEECREMLDAGEWKALAHVRICGLMGMASNTDNIEQINGEFR 170
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LLS + +E K +LSMGM+ D+ AIASG+T VR+GS IFGER
Sbjct: 171 LLSSLFKEIKENWFADSDVFRELSMGMSHDYHEAIASGSTLVRVGSKIFGEREYN 225
>gi|330813401|ref|YP_004357640.1| YggS-like protein [Candidatus Pelagibacter sp. IMCC9063]
gi|327486496|gb|AEA80901.1| YggS-like protein [Candidatus Pelagibacter sp. IMCC9063]
Length = 216
Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 84/218 (38%), Positives = 115/218 (52%), Gaps = 8/218 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + ++ N + +++AVSK I+ + G +F ENK+QEA
Sbjct: 3 NIVQNFLNIRDELTN----SNLNP---TVIAVSKTFPLGHIKPLIDHGHRVFGENKVQEA 55
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+KW ++L IG LQSNK E V LFD I +V K AS LS K S
Sbjct: 56 KQKWSELKDSLKGLELHLIGGLQSNKSKEAVQLFDYIHSVDSMKLASELSKAEAKLSVKR 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN G E QKSG+ + ++ + C + LNV GLMCIPP +P PHF L+E+
Sbjct: 116 KYFIQVNVGMEEQKSGVSKKEVENLLKYCVNEKNLNVIGLMCIPPFDQDPTPHFNHLNEL 175
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +SMGM+ D+ A G+T VRIGS IFG R
Sbjct: 176 NNHLGLKFISMGMSDDYMSAGKCGSTHVRIGSKIFGSR 213
>gi|308173500|ref|YP_003920205.1| hypothetical protein BAMF_1609 [Bacillus amyloliquefaciens DSM 7]
gi|307606364|emb|CBI42735.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328553569|gb|AEB24061.1| hypothetical protein BAMTA208_09470 [Bacillus amyloliquefaciens
TA208]
gi|328911639|gb|AEB63235.1| hypothetical protein LL3_01695 [Bacillus amyloliquefaciens LL3]
Length = 230
Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 104/228 (45%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++L+ ++I + + R + V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVADQLRHINERINEACNRSGRSPEDVTVIAVTKYVSAERAQEAVDAGITSLGENRDTE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + + FIGSLQ+ KV +V I ++ R A + + +
Sbjct: 61 LIR--KQDVIKGSPEWHFIGSLQTRKVKAVVDRVSYIHSLDRLSLAKEIE---KRAPHAV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVNT E K G+ + F+ ++VEGLM + P + + ++
Sbjct: 116 RCFVQVNTSREPSKHGLKTEEVIPFIRELSDFRNISVEGLMTMAPLTDDTETIRACFRQL 175
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+E+A+ GAT +RIGS + G
Sbjct: 176 RDLRDQVQQLNQTNAPCRELSMGMSNDYEIAVEEGATFIRIGSSLVGN 223
>gi|169343770|ref|ZP_02864769.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens C
str. JGS1495]
gi|169298330|gb|EDS80420.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens C
str. JGS1495]
Length = 219
Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + +V+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFHQ--EVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHF 174
IQVN G E QK GI+ + + + +NV G+M I P
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|73542486|ref|YP_297006.1| hypothetical protein Reut_A2801 [Ralstonia eutropha JMP134]
gi|72119899|gb|AAZ62162.1| Protein of unknown function UPF0001 [Ralstonia eutropha JMP134]
Length = 229
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 106/228 (46%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ + I +A A R + V L+AVSK V +R A GQ F EN +Q
Sbjct: 1 MSVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQ 60
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E +K + + FIG LQSNK + FD + + R K A LS +
Sbjct: 61 EGVEKIVALADLRSQITWHFIGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V IQVN E KSG+ P + + L + GLM IP +P + F
Sbjct: 121 PLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLRGLMAIPEPATDPAAQREPFT 180
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + A +L LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 181 AMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGAR 228
>gi|56419666|ref|YP_146984.1| hypothetical protein GK1131 [Geobacillus kaustophilus HTA426]
gi|56379508|dbj|BAD75416.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 224
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K VD+++ L G EN+ +
Sbjct: 1 MTVRDNLAAIRREIEAACARVGRDPAGVRIVAVTKYVDAERAMEVLDAGIADLGENRSDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K R FIG+LQS KV +I+ D I ++ R A + + R +
Sbjct: 61 LIEKHA--RIGNQATWHFIGTLQSRKVKDIIDKVDYIHSLDRLSLAKEIE---KRAVRPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E+ K G+ P +T F+ R ++ V GLM + P + +
Sbjct: 116 KCFVQVNVSGEVTKHGLAPEETIPFIEQLRAFSRIEVVGLMTMAPHTDDEAVLRACFRRL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 176 RMLKERVQALGMAHAPCTELSMGMSNDYTIAIEEGATFVRIGSALVGS 223
>gi|302144100|emb|CBI23205.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 102/232 (43%), Gaps = 16/232 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ +++ +A + R + +VAVSK IR G F EN +QE +
Sbjct: 77 AAALRSVLHRVQQAAERSGRGPHQIRVVAVSKTKSVSLIREVYDSGHRCFGENYVQEIIE 136
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL----LSLEMIKQSRF 119
+ D++ FIG+LQSNKV +++ + V + + +
Sbjct: 137 --KAPQLPEDIEWHFIGNLQSNKVKPLLTGVPNLAVVETVDDEKIADRLDRMVATIGRKP 194
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V +QVNT E KSG+ P + + L GLM I P +
Sbjct: 195 LKVMVQVNTSGEESKSGVDPAACVELVKHVALGCPNLEFGGLMTIGMLDYTSTPENFKTL 254
Query: 178 ----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SE+ + +T+ LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 255 ANCRSEVCKSLGITEEQCELSMGMSGDFELAIEMGSTNVRIGSTIFGAREYP 306
>gi|188588531|ref|YP_001921583.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E3
str. Alaska E43]
gi|188498812|gb|ACD51948.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E3
str. Alaska E43]
Length = 224
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 104/232 (44%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K +I +V L+AVSK + ++ A G F ENK+QE
Sbjct: 1 MGIKENIEKLKLEI----------PKNVELLAVSKTKPIEDLKQAYEAGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ IG+LQ+NKV +V +I ++S K + + K +
Sbjct: 51 LVS--KEEVLPKDIRWHLIGNLQTNKVKYLVDKVYLIHSLSSIKLLNEIEKVFEKNNTVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E KSGI+ + + + + +G+M I P +F
Sbjct: 109 NVLIQINIGREESKSGILKEELQGIIEAIEACNYVLAKGIMVIIPKGDEKNNRKYFKETK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
EI + K+ LSMGMT DF AI G+T VRIG GIFGER T
Sbjct: 169 EIFDYLKVRKYKNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|300814706|ref|ZP_07094956.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511179|gb|EFK38429.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 228
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++IE + + V+L+AV+K ++ I+ A+ G EN++QE
Sbjct: 1 MSVKDNLKFVMEEIEKA-KRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K L + IG+LQ+NKV I + +I+++ K A + +
Sbjct: 60 LKSKIDELGPIVN--YHMIGNLQTNKVKYIYNRVYMIQSLDTLKLAKEIDKRAGSDGIEV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQ+N G E QKSGI T F+ +++ GLM I P + + L ++
Sbjct: 118 NCLIQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLFRKM 177
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 178 FEMKEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKRIY 228
>gi|288553147|ref|YP_003425082.1| hypothetical protein BpOF4_00605 [Bacillus pseudofirmus OF4]
gi|288544307|gb|ADC48190.1| hypothetical protein BpOF4_00605 [Bacillus pseudofirmus OF4]
Length = 229
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 110/229 (48%), Gaps = 18/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +I + R S+++VAV+K V +++ + A+ G V EN+ +
Sbjct: 1 MSVKENFDKIQSEIASICDRIGRDPASINVVAVTKYVSNERAKEAIDAGVVHLGENRAEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++++ V FIGSLQS KV ++ + ++ R A L + ++
Sbjct: 61 LAMKQEDIQEQ--VSWHFIGSLQSKKVKKVAPHISYLHSLDRVSLAKELDKRLDREL--- 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K+G+ + +F+ L + GLM + P + +P+ + +
Sbjct: 116 ACFVQVNVSKEESKAGLDIEEVDEFIQELEAYPSLKIIGLMTMAPFVNDPEETRPIFKAL 175
Query: 181 ARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ +L +LSMGM+ D+++AI GAT +RIG+ + G
Sbjct: 176 -KKIQLDIQAKNYSHAPCTELSMGMSNDYQVAIEEGATFIRIGTSLVGN 223
>gi|251778603|ref|ZP_04821523.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082918|gb|EES48808.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 224
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 103/232 (44%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K +I +V L+AVSK + ++ A G F ENK+QE
Sbjct: 1 MGIKENIEKLKLEI----------PKNVELLAVSKTKPIEDLKQAYEAGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ IG+LQ+NKV +V +I ++S K + + K +
Sbjct: 51 LVS--KEEVLPKDIRWHLIGNLQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNTVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E KSGI+ + + + +G+M I P +F
Sbjct: 109 NVLIQINIGREESKSGILKEGLQGLIEAIETCNYVLAKGIMVIIPKGDEKNNRKYFKETK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
EI + K+ LSMGMT DF AI G+T VRIG GIFGER T
Sbjct: 169 EIFDYLKVRKYKNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|312131524|ref|YP_003998864.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311908070|gb|ADQ18511.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 217
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 22/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L+ +Q+I SV L+AVSK + A +CGQ F EN +QE
Sbjct: 1 MSISDRLRALRQEI----------PPSVDLIAVSKFKPVADLEEAYACGQRDFGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ DV+ FIG LQ+NKV I +I +V K + + + R +
Sbjct: 51 LVE--KESALPKDVRWHFIGHLQTNKVKYIAPFVHLIHSVDSLKLLKEIQKQGASKGRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC--RQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V +Q + E K+G + K+ + + + VEGLM + +
Sbjct: 109 SVLLQAHIAEEESKTGFDIEELKEILQSGTLQTFPNVKVEGLMGMGTFTEDADQTRREFK 168
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A E L LSMGM+ D+++A+ G+ VRIGS IFG R
Sbjct: 169 HMAEIFEEAKQYEPGLKILSMGMSGDWKIAVEEGSNMVRIGSTIFGSRN 217
>gi|85858964|ref|YP_461166.1| alanine racemase domain-containing protein [Syntrophus
aciditrophicus SB]
gi|85722055|gb|ABC76998.1| alanine racemase, N-terminal domain protein [Syntrophus
aciditrophicus SB]
Length = 232
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 115/227 (50%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N + +++I +A A R + L+AV+K V +I AL G + EN +QE K
Sbjct: 6 IRNNIAEIRERIAGAATRAGRQVSEIRLMAVTKKVQESRIGQALEAGIDLCGENYIQEGK 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + Q IG LQ+NK V LFD++++V R + A L R LPV
Sbjct: 66 TKIEAIG--HPPQWHMIGHLQTNKAKYAVRLFDMVQSVDRLELAIELERRARAAGRVLPV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
I+VN+G E+ KSG+ P + + + + +EGLM +PP NP+ + +
Sbjct: 124 LIEVNSGGELTKSGVAPEEAESLIRSIALLENIAIEGLMTMPPWFENPETARPYFAALRT 183
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGMT D+E+AI GAT VRIG GIFGER
Sbjct: 184 LRDRIAAERIDRVSLRELSMGMTDDYEVAIEEGATIVRIGRGIFGER 230
>gi|255590737|ref|XP_002535350.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223523376|gb|EEF27030.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 238
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + L +Q+I ++ + V+L AVSK + IR A GQ +F EN LQ
Sbjct: 1 MTALSDNLACIRQQITDAQARFQ-AMQPVTLCAVSKAQPATAIRAAYDAGQTVFGENYLQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K + + FIG +QSNK I FD + +V R K A LS
Sbjct: 60 EALQKQAE-LDDCAIAWHFIGPIQSNKTQPIARHFDWVHSVDRLKIAQRLSNARPSDLPP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG + + + +Q L + GLM IP + + +
Sbjct: 119 LNICLQVNISEEASKSGASGQELLELALNIKQLPHLQLRGLMAIPAPCSDFEQQRDQFRQ 178
Query: 180 ---IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LS+GM+ DF AIA GAT VRIG+ IFG R
Sbjct: 179 VRALFEQLNSHGLQLDTLSIGMSGDFAAAIAEGATLVRIGTAIFGARTPS 228
>gi|153953817|ref|YP_001394582.1| hypothetical protein CKL_1192 [Clostridium kluyveri DSM 555]
gi|219854433|ref|YP_002471555.1| hypothetical protein CKR_1090 [Clostridium kluyveri NBRC 12016]
gi|146346698|gb|EDK33234.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219568157|dbj|BAH06141.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 222
Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 21/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L ++ + +V LVAVSK K I+ G F ENK+QE
Sbjct: 1 MSIKENLDKIEEDLRE---------SNVILVAVSKTKSIKDIQKVYDLGIRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQ NKV IV ++I ++ K L ++
Sbjct: 52 FVS--KEPNLPEDIRWHFIGHLQRNKVKYIVGKVELIHSLDGVKLLQELEKHYKAKNLTA 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLS 178
V IQ+N G E K+GI ++ + C + V+GLM + P + +F +
Sbjct: 110 NVLIQINIGCEENKTGIYLENLEELIEACELCTNVKVKGLMSVIPIGDEKSCRNYFRKMK 169
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I ++ K + LSMGMT D+ +A+ G+T VRIG GIFG+R
Sbjct: 170 YIFQDLKNKKFTNISMDILSMGMTHDYGVAVEEGSTLVRIGEGIFGKRNYN 220
>gi|325335191|gb|ADZ11465.1| Predicted enzyme with a TIM-barrel fold [Riemerella anatipestifer
RA-GD]
Length = 234
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +I +V+LVAVSK + I+ + G +F ENK+QE
Sbjct: 17 MSVEANYSKLISQI----------PKTVNLVAVSKTYPVEDIQKVYNLGHKVFGENKVQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+Q IG LQ+NKV I I++V EK + + K R +
Sbjct: 67 LVAKHTE--LPSDIQWHLIGHLQTNKVKYIAPFIHTIQSVDSEKLLQEIDKQAGKHKRLI 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPHFY--- 175
+ +QV E K+G+ N+ K+ + +Q + ++GLM + +
Sbjct: 125 NILLQVKIAEEDTKTGLEVNEVKELCVKIKQGEFPNIKLQGLMGMATFTDDETQIRREFS 184
Query: 176 LLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ +L LSMGM+ DF LAI GA S+R+GS IFG R Q
Sbjct: 185 FLKQLYDYLSDSHQLNTLSMGMSGDFPLAIECGANSIRVGSAIFGARNYQ 234
>gi|313207350|ref|YP_004046527.1| alanine racemase domain protein [Riemerella anatipestifer DSM
15868]
gi|312446666|gb|ADQ83021.1| alanine racemase domain protein [Riemerella anatipestifer DSM
15868]
gi|315023245|gb|EFT36255.1| hypothetical protein RAYM_08700 [Riemerella anatipestifer RA-YM]
Length = 218
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +I +V+LVAVSK + I+ + G +F ENK+QE
Sbjct: 1 MSVEANYSKLISQI----------PKTVNLVAVSKTYPVEDIQKVYNLGHKVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+Q IG LQ+NKV I I++V EK + + K R +
Sbjct: 51 LVAKHTE--LPSDIQWHLIGHLQTNKVKYIAPFIHTIQSVDSEKLLQEIDKQAGKHKRLI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPHFY--- 175
+ +QV E K+G+ N+ K+ + +Q + ++GLM + +
Sbjct: 109 NILLQVKIAEEDTKTGLEVNEVKELCVKIKQGEFPNIKLQGLMGMATFTDDETQIRREFS 168
Query: 176 LLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ +L LSMGM+ DF LAI GA S+R+GS IFG R Q
Sbjct: 169 FLKQLYDYLSDSHQLNTLSMGMSGDFPLAIECGANSIRVGSAIFGARNYQ 218
>gi|319778671|ref|YP_004129584.1| Hypothetical protein YggS [Taylorella equigenitalis MCE9]
gi|317108695|gb|ADU91441.1| Hypothetical protein YggS [Taylorella equigenitalis MCE9]
Length = 233
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 11/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +Q++ + A R SV+++ V+K IR+A+ G FAENK QE
Sbjct: 3 TLAENFRALEQRVNEACKQAGREPGSVNILPVTKTFSPDTIRMAIDLGYHRFAENKAQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+K I L+ +Q IG LQ+NK E+ + I+++ R + A L + + +
Sbjct: 63 KEKAIELQDYDQLQWVIIGYLQTNKSKEVATYASEIQSLDRIELAKALDNRLQAAGKSIK 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL--NVEGLMCIPPAMGNP---KPHFYL 176
+QV T E+ K+G+ ++ F+ ++ +++G M I N + F
Sbjct: 123 ALVQVKTSPEVSKTGLEISEVPAFLNDLKESGIQTLDLQGFMTIAENTENQDDIRKCFSS 182
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E+A C+ L +LSMGM+ DFE+AI GAT +RIG +FGER
Sbjct: 183 LRELAERCRDITGLALPQLSMGMSGDFEIAIQEGATEIRIGHALFGERN 231
>gi|332976336|gb|EGK13192.1| cell division protein YlmE [Desmospora sp. 8437]
Length = 235
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 14/228 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + +L ++ I+ + A R V+++AV+K VD + R L G E++ Q
Sbjct: 4 MDEIKERLDQVRENIQKACGRAGRNPAEVNVIAVTKYVDVETTRRVLDVGLTDIGESRAQ 63
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA KW L + FIG LQ NKV +V F + ++ R A L+ +
Sbjct: 64 EAVPKWEQLGER--GVWHFIGHLQRNKVKAVVGRFTYVHSLDRYSLARELNNRSEALGQP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+IQVN E K G+ P + DF + L + GLM + P +P+ + +
Sbjct: 122 TRCFIQVNVAGEESKRGLKPEEVIDFAREAAELPWLQLAGLMTMAPFTEDPEEVRPVFRQ 181
Query: 180 IA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ L LSMGM+RD+ +A+ GAT VR+GS + G
Sbjct: 182 LRGLQQEIRKLGDSRLDLPHLSMGMSRDYTVAVEEGATFVRLGSVLVG 229
>gi|269837214|ref|YP_003319442.1| alanine racemase domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269786477|gb|ACZ38620.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 239
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 15/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK---IRVALSCGQVIFAENKL 58
++ K+ ++ + +A A R S+ +V V+K + + A + G F EN++
Sbjct: 10 TVAEKVARVQELVRAAAERAGRDPASIRIVGVTKTLPPDANATVEAAWAAGLRDFGENRV 69
Query: 59 QEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
Q+A KK L E L IG LQ+NK + V LF +I +V R L +
Sbjct: 70 QDAAKKVSTLFTAVLEEGATLHLIGHLQTNKARDAVRLFSLIHSVDRPGLVDALQRRAER 129
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+ + + +QVN E QK G P + + + + L+V GLM I P + +P +P
Sbjct: 130 EGKRQDILLQVNVAREEQKHGCAPEEAEALLRHAAAQPNLHVRGLMTIAPLVDDPEETRP 189
Query: 173 HFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L + + + L +LSMGMT D+E+AI GAT +R+G IFG
Sbjct: 190 VFAALRSLRDQLQEATGIALPELSMGMTNDYEVAIEEGATIIRVGRAIFG 239
>gi|282882126|ref|ZP_06290767.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus lacrimalis
315-B]
gi|281298156|gb|EFA90611.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus lacrimalis
315-B]
Length = 228
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 14/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++IE + + V+L+AV+K ++ I+ A+ G EN++QE
Sbjct: 1 MSVKDNLKFVMEEIEKA-KRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K L + IG+LQ+NKV I + ++I+++ K A + +
Sbjct: 60 LKSKIDELGPIVN--YHMIGNLQTNKVKYIYNRVNMIQSLDTLKLAKEIDKRAGSDGIEV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQ+N G E QKSGI T F+ +++ GLM I P + + L ++
Sbjct: 118 NCLIQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLFRKM 177
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 178 FEMKEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKRIY 228
>gi|290969126|ref|ZP_06560654.1| pyridoxal phosphate enzyme, YggS family [Megasphaera genomosp.
type_1 str. 28L]
gi|290780846|gb|EFD93446.1| pyridoxal phosphate enzyme, YggS family [Megasphaera genomosp.
type_1 str. 28L]
Length = 227
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++KI+ +A D ++LVAV+K +R A S G EN++QEA
Sbjct: 2 IKENIEFVRKKIQAAADRVGVN-DKITLVAVTKNHPVSCMREAASAGITQVGENRVQEAL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + IG LQ+NK V+ FD+I +V E + + + PV
Sbjct: 61 QKQKDFPNNT-LTWHLIGHLQTNKAKAAVAHFDLIHSVDSEHLLLAVQKAAAQIGKIQPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---- 178
+QVN E K G+ + L + V+G MCI P + + +
Sbjct: 120 LLQVNVAREESKYGMAVEEFPHICRLASSLSHVCVQGFMCIAPNVAQVEEVRPVFRIAHA 179
Query: 179 ---EIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ ++ LSMGMT DFE+AI GA VR+G+ IFGER
Sbjct: 180 LYEDMKQKFPTGQIRYLSMGMTHDFEIAIEEGANIVRVGTAIFGERNY 227
>gi|288572875|ref|ZP_06391232.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568616|gb|EFC90173.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 238
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 104/223 (46%), Gaps = 12/223 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEAKKKWI 66
+ ++ +A + R + V L+ V+K ++I G + EN++QEA+ K
Sbjct: 12 REVLDRMAEAAFRSGRRPEEVRLLGVTKTHPVERILPVARTGLLWALGENRVQEAEGKME 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQSRFLPVYIQ 125
++ + IG LQ NK + ++LFDVI +V + A L + I+
Sbjct: 72 NWPEDLSIPWHLIGHLQRNKARKAMALFDVIHSVDSLRLAETLDRLALEFDKAPYDIMIE 131
Query: 126 VNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLSEIA 181
VNT E K GI P +T + LN GLM + P + +L E+
Sbjct: 132 VNTSGEASKHGISPEETLDLLDGIFSSCGYLNPVGLMTVGPLCDDQVRIGRAFGVLRELR 191
Query: 182 REC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFELAI G+T VR+GS IFGER
Sbjct: 192 DQATKEFGRSLPELSMGMSGDFELAIEEGSTIVRVGSAIFGER 234
>gi|306820239|ref|ZP_07453881.1| YggS family pyridoxal phosphate enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551736|gb|EFM39685.1| YggS family pyridoxal phosphate enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 232
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 16/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++ I+N+ +K +D V L+AVSK VD +K++ A+ G V F ENK QE
Sbjct: 5 IKSNIEKVNYLIKNALARSKYNQD-VKLIAVSKTVDVEKVKEAIDSGVVDFGENKPQELV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D+ IG+LQ NKV I+ +I ++ + ++ +P
Sbjct: 64 RKYE---VYNDLNWHLIGTLQKNKVKYIIDKACLIHSLDSFALCDEVDKRAKDKNIIIPC 120
Query: 123 YIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
IQ+N E K GI ++ T+ ++ + + ++GLM + + +P+F +
Sbjct: 121 LIQINISGEETKHGIKESELTEFVKVVTEKNTNIKLKGLMGMAAFEEDKEKTRPYFQRMK 180
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ ++T+LSMGM+ DFE+AI GAT VRIG+ IFGER
Sbjct: 181 ELLVSVNSKNINSLEMTELSMGMSNDFEIAIEEGATMVRIGTTIFGERIY 230
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera]
Length = 245
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A + R D V +VAVSK IR G F EN +QE +K
Sbjct: 20 RVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQ--LPE 77
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----KQSRFLPVYIQVNT 128
D++ FIG LQSNKV +++ + V + + + + L V +QVNT
Sbjct: 78 DIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRRKPLKVLVQVNT 137
Query: 129 GYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLS---EIAR 182
E+ KSG+ P+ + + L GLM +P P+ LL+ E+ +
Sbjct: 138 SGEVSKSGVEPSGCVELAKHVKLGCPNLEFSGLMTIGMPDYSSTPENFRRLLNCRIEVCK 197
Query: 183 ECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 198 ALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPREYP 240
>gi|325474954|gb|EGC78140.1| hypothetical protein HMPREF9353_00987 [Treponema denticola F0402]
Length = 246
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ +++E + R V L+ +K V ++I A G+++ ENK+QE
Sbjct: 4 DIKINLEEVHRRMEKACKTCGRDLKEVRLLMATKTVTPERILKAFEYGELLIGENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ P + FIG LQ+NK+ +++ D IE+V R A LS + + + +
Sbjct: 64 CEKYEP-LSSVKHETHFIGHLQTNKIKDVIKYADCIESVDRLDLAEKLSKRLESEGKTMD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---IPPAMGNPKPHFYLLS 178
+ IQVNT E K G P + + L ++GLM M + F LL
Sbjct: 123 ILIQVNTSQEESKFGCKPEEALSLTEKIAKLPCLKIKGLMTIGLFSDNMDKVRLCFKLLQ 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+I +E + +SMGMT D E+AI G+T +R+G+ IFG+R
Sbjct: 183 KIRKEITEKNIPNVSMEVVSMGMTGDLEVAIEEGSTLIRVGTAIFGKRNYP 233
>gi|34495633|ref|NP_899848.1| hypothetical protein CV_0178 [Chromobacterium violaceum ATCC 12472]
gi|34101488|gb|AAQ57857.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 231
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++LQ + +++ + A R + +L+AVSK + +R A +CGQ F EN +QE
Sbjct: 4 SLSSRLQQVRLRLDAACAAAGRAPGAAALLAVSKTFPADALRAAYACGQRAFGENYVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +++ FIG LQSNK + + ++ R K A LS + L
Sbjct: 64 QQKCEALAGL-EIEWHFIGPLQSNKTRIVAERAHWVHSIDRLKIAERLSAQRPDGLPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V +QVN E KSG P + +L + GLMCIP + + +
Sbjct: 123 VCVQVNVSGEDSKSGCAPEEAAALARAVAALPRLRLRGLMCIPEPTEDTARLAAQFARLR 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L LSMGM+ D E A+A GAT VR+GS IFG+R Q
Sbjct: 183 GLQRQLNAEGLALDTLSMGMSADLETAVAEGATLVRVGSAIFGQRDYQ 230
>gi|229006183|ref|ZP_04163869.1| hypothetical protein bmyco0002_31030 [Bacillus mycoides Rock1-4]
gi|228755024|gb|EEM04383.1| hypothetical protein bmyco0002_31030 [Bacillus mycoides Rock1-4]
Length = 224
Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MVVQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + KQ
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRTTKQV--- 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QV T E K GI +T F+ ++ ++ V GLM + P + ++
Sbjct: 116 RCFVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RGLQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|224117946|ref|XP_002331519.1| predicted protein [Populus trichocarpa]
gi|222873743|gb|EEF10874.1| predicted protein [Populus trichocarpa]
Length = 238
Score = 157 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 16/232 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ Q++ +A A R + +VAVSK I+ G F EN QE +
Sbjct: 6 AAALRSVLQRVSQAAEKAGRGSQQIRVVAVSKTKPVSLIKQVYDVGHRCFGENYAQEFIE 65
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IKQSRF 119
+ D++ FIG+LQSNKV +++ ++ V + + +
Sbjct: 66 --KAPQLPEDIEWHFIGNLQSNKVKPLLASVPNLDMVESVDDEKIANHLDRAVGNLGRKP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V +QVNT E KSG+ P+ + + + L GLM I P +
Sbjct: 124 LKVLVQVNTSGEESKSGVEPSGCVELAKHVIQSCTNLQFCGLMTIGMLDYTSTPENFKAL 183
Query: 178 ----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SE+ + + + LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 184 ANCRSEVCKALGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPREYP 235
>gi|56461074|ref|YP_156355.1| TIM-barrel fold family protein [Idiomarina loihiensis L2TR]
gi|56180084|gb|AAV82806.1| Predicted enzyme with a TIM-barrel fold [Idiomarina loihiensis
L2TR]
Length = 240
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
+ N L +Q+++ + + + SV L+AVSK + I+ A++ GQ+ F EN +QEA
Sbjct: 13 ITNNLAEIRQQLQILSEES-PHQQSVKLLAVSKKHSLEAIKAAIAAGQMHFGENYVQEAV 71
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + VQ FIG +QSNK +I FD +++V REK A L+ + S+ L
Sbjct: 72 AKITQLKEQTTDPVQWHFIGPVQSNKTKDIAQHFDWVQSVEREKIARRLNEQRPDDSQQL 131
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLL 177
+ +QVN + KSG+ P Q + +L + GLM I + F +
Sbjct: 132 NLLLQVNIDDDDNKSGLAPEQVEALAEYVMNCPKLKLRGLMTILKAGTTEDEREKSFQQM 191
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ ++ + + LSMGM+ D A+ GA VRIG+ IFGER
Sbjct: 192 YKLYQQLQQTYGEQIDTLSMGMSGDMRQAVLEGANMVRIGTAIFGER 238
>gi|329769175|ref|ZP_08260595.1| YggS family pyridoxal phosphate enzyme [Gemella sanguinis M325]
gi|328839394|gb|EGF88972.1| YggS family pyridoxal phosphate enzyme [Gemella sanguinis M325]
Length = 225
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + K++I + R + + ++AV+K V ++ A+ G FAEN+ Q
Sbjct: 1 MDIRENFDNIKREISEACGKVDRSPEDIKVIAVTKYVTDARVEQAIEVGVDAFAENRPQN 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++ D + IGSLQ+ KV ++++ D + RE A + + +
Sbjct: 61 YLERKQKYS---DKEWHLIGSLQTRKVRDVINHVDYFHALDRESLAKEIEK---RAEDRV 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G+ ++T +F+ + ++NV GLM + P + + ++
Sbjct: 115 NCFVQVNVSGEESKHGLTSHETIEFIKGLGKYSKINVIGLMTMAPFVEDEDVLRNCFKKL 174
Query: 181 A------RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E L LSMGM+ D+++AI GAT VRIG+ + G
Sbjct: 175 RQLRDEVKELNLDYAPCEYLSMGMSNDYKIAIEEGATHVRIGTSLVGN 222
>gi|312879667|ref|ZP_07739467.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
gi|310782958|gb|EFQ23356.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
Length = 232
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++I +A+ A R + L AV+K ++ + A +CG AEN++QEA
Sbjct: 3 SVRENVERVRERIARAALRAGRDPSEIRLAAVTKRHPAEAVLQAAACGVDWIAENRVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-MIKQSRFL 120
+ K V +G LQ NKV + + +FD I TV ++ A + Q +
Sbjct: 63 QGKRENCPGVT-VPWCLVGHLQRNKVRKALEVFDAIHTVDSQELAVSMERVLEEGQRTGV 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
PV ++VN E KSG+ P + + + +L +EGL+ + P + +P+
Sbjct: 122 PVLLEVNVSGEAAKSGVSPEGAEALAETVVSRCSRLRLEGLLAVGPLVDDPEAIRGAFRL 181
Query: 179 ------EIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ R+ L LSMGM+ DFE+A+ G+T VR+G+ +FG R
Sbjct: 182 LGRIAGDLRRQLGLPLATLSMGMSDDFEIAVEEGSTLVRLGTALFGPR 229
>gi|225018389|ref|ZP_03707581.1| hypothetical protein CLOSTMETH_02336 [Clostridium methylpentosum
DSM 5476]
gi|224948807|gb|EEG30016.1| hypothetical protein CLOSTMETH_02336 [Clostridium methylpentosum
DSM 5476]
Length = 236
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 10/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + +Q++ +A A R + L+AV+K V + + VA+ CG + EN+ QE
Sbjct: 13 SIRENVALVQQRVVRAAERAGRSPADIRLMAVTKTVAPEYVNVAVECGVNLLGENRAQEL 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + FIG LQ NKV I+ +IE+V A + + + +P
Sbjct: 73 LEKHSVYTLGPEC-IHFIGHLQRNKVKSIIDKVSMIESVDSVSLAEEIDRQASRIGVVMP 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V ++VN G + KSG P ++ + + + V+GLM IPP N + +F + +++
Sbjct: 132 VLLEVNIGLQPTKSGFAPEALEEGLRAVSRLKNIAVKGLMAIPP-KDNTQEYFQKMQQLS 190
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ELAIA GA VR+GS +FG+R
Sbjct: 191 VDIAGKNIDNSTMEYLSMGMSADYELAIACGANIVRVGSALFGQR 235
>gi|150025955|ref|YP_001296781.1| hypothetical protein FP1913 [Flavobacterium psychrophilum JIP02/86]
gi|149772496|emb|CAL43979.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 219
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 105/231 (45%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K I +SV+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAQNLNKIKASI----------PESVTLVAVSKTKPISDLMEAYQAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +Q+NKV + +I V K ++ + K R +
Sbjct: 51 MTQKWEVMPK--DIQWHMIGHVQTNKVKFMAEYVSLIHGVDSLKLLEEINKQAKKYDRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ + + + K N++ GLM + N +
Sbjct: 109 ACLLQIYIAKEETKFGLDEKELNELLASTEFKSFQNIKIVGLMGMATFTENQNQIKKEFT 168
Query: 179 EIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C+L+ LSMGM+ D++LAI SG+T VRIGS IFG R
Sbjct: 169 HLKSIFDNSKSSSIVNCQLSILSMGMSGDYKLAIESGSTMVRIGSSIFGGR 219
>gi|329891188|ref|ZP_08269531.1| hypothetical protein BDIM_28990 [Brevundimonas diminuta ATCC 11568]
gi|328846489|gb|EGF96053.1| hypothetical protein BDIM_28990 [Brevundimonas diminuta ATCC 11568]
Length = 217
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 1/210 (0%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I ++A+ A R SV L AVSK + AL+ GQ +F EN++QEAK W R
Sbjct: 2 RRRIHDAALAAGRDPASVVLTAVSKTQGDAALDAALATGQRVFGENRVQEAKAHWDERRA 61
Query: 71 E-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D++LR IG LQ+NK + V LFDVIET+ RE+ A+ L+ K R V +QVNTG
Sbjct: 62 ALPDLELRLIGPLQTNKAQDAVELFDVIETLDRERLAAALAAAARKTGRRPRVLVQVNTG 121
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
E QK+G++P+ + R + L VEGLMCIPPA +P PHF LL+ IA L+ L
Sbjct: 122 AEPQKAGVLPDDADALIAAARDVHGLTVEGLMCIPPADEDPAPHFALLAAIAARNGLSVL 181
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
SMGM+ D+ AI +GAT VR+GS +FGER
Sbjct: 182 SMGMSGDYLTAIEAGATHVRVGSALFGERN 211
>gi|297583957|ref|YP_003699737.1| alanine racemase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142414|gb|ADH99171.1| alanine racemase domain protein [Bacillus selenitireducens MLS10]
Length = 226
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 15/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L K KI+ + + R + V ++AV+K V +++ A+ G EN++++
Sbjct: 3 TVSKQLADVKAKIKKACERSGRQEQDVHIIAVTKYVTTERAIEAVDAGVRHVGENRVEDY 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K+ + + FIGSLQS KV ++++ FD + ++ R A L + + +
Sbjct: 63 REKYDEIGTR--AEWHFIGSLQSKKVKKMINEFDYLHSLDRLSLAKELDKR--AEGKKVK 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
++QVN E K+GI P++ F+ Q L V GLM + P N ++ SE+
Sbjct: 119 CFVQVNVSGESSKAGISPSEVLPFIKELEQYQALEVSGLMTMAPLTENESELRHVFSELR 178
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +LSMGM+ D+E+A+ GAT VRIGS + G
Sbjct: 179 KLRDLIQAESLPHAPCKELSMGMSNDYEIAVEEGATFVRIGSALVGS 225
>gi|329910471|ref|ZP_08275312.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium
IMCC9480]
gi|327546168|gb|EGF31216.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium
IMCC9480]
Length = 233
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 107/232 (46%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + LQ I+ +A R S++L+AVSK D+ + A + GQ F EN LQ
Sbjct: 1 MSVISSNLQAVHGAIDAAAQAVSRLPHSITLLAVSKTFDAAAVLEAAAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K +R + FIG +QSNK I FD + +V REK A LS +
Sbjct: 61 EALDKIAAVRLAQPELILEWHFIGPIQSNKTRPIAESFDWVHSVEREKIARRLSDQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + +QVN E KSG+ + +L + GLM IP
Sbjct: 121 LPPLNICLQVNISGEASKSGVPAGEALAVAQAIAAMPRLGLRGLMAIPEPSTVVAEQRAA 180
Query: 177 LSEI---ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +C+ + LSMGM+ D AIA GAT VR+G+ IFG R
Sbjct: 181 FRQLHVLFEQCRAAGLPMDTLSMGMSSDLPAAIAEGATIVRVGTAIFGARTY 232
>gi|42527817|ref|NP_972915.1| hypothetical protein TDE2315 [Treponema denticola ATCC 35405]
gi|41818645|gb|AAS12834.1| conserved hypothetical protein TIGR00044 [Treponema denticola ATCC
35405]
Length = 275
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ +++E + R V L+ +K V ++I A G+++ ENK+QE
Sbjct: 33 DIKINLEEVHRRMEKACKACGRDLKEVRLLMATKTVTPERILKAFEYGELLIGENKVQEL 92
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ P + FIG LQ+NK+ +++ D IE+V R A LS + + + +
Sbjct: 93 CEKYEP-LSSVKHETHFIGHLQTNKIKDVIKYADCIESVDRLDLAEKLSKRLESEGKTMD 151
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
+ IQVNT E K G P + + L ++GLM I + F LL
Sbjct: 152 ILIQVNTSQEESKFGCKPEEALALTEKIAKLPCLKIKGLMTIGLFSDDMDKVRLCFKLLQ 211
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+I +E + +SMGMT D E+AI G+T +R+G+ IFG+R
Sbjct: 212 KIRKEITEKNIPNVSMEVVSMGMTGDLEVAIEEGSTLIRVGTAIFGKRNYP 262
>gi|156343716|ref|XP_001621090.1| hypothetical protein NEMVEDRAFT_v1g146073 [Nematostella vectensis]
gi|156206711|gb|EDO28990.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 99/229 (43%), Gaps = 22/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ I + V+LVAVSK K I A + GQ IF ENK+QE
Sbjct: 7 TIKENIEEITASI----------PNDVTLVAVSKTKPIKDILEAYNAGQRIFGENKIQEM 56
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ D+Q IG LQ NKV + D+I V KT ++ + K +R +
Sbjct: 57 AAKYEE--LPKDIQWHMIGHLQRNKVKYMAHFVDLIHGVDSLKTLQEINKQASKHNRVIK 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Q E K G+ ++ ++ + V GLM + N + S
Sbjct: 115 CLLQAKIAAEDSKFGLSFTHIEEVLASSEIKEFKNIQVVGLMGMATFTDNQQQLKKEFSS 174
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D++LAI +G+ +R+GS IFG R
Sbjct: 175 LKTFFDTLATQYTTLKILSMGMSGDYQLAIKNGSNMIRVGSSIFGARNY 223
>gi|16127975|ref|NP_422539.1| hypothetical protein CC_3745 [Caulobacter crescentus CB15]
gi|221236797|ref|YP_002519234.1| pyridoxal 5'-phosphate dependent enzyme class III [Caulobacter
crescentus NA1000]
gi|13425517|gb|AAK25707.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220965970|gb|ACL97326.1| pyridoxal 5'-phosphate dependent enzyme class III [Caulobacter
crescentus NA1000]
Length = 217
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 98/198 (49%), Positives = 126/198 (63%), Gaps = 2/198 (1%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P SV+LVAVSK I L GQ +F EN++QEA ++W P R+ ++LR IG LQ
Sbjct: 22 PAGSVTLVAVSKTQPWDHIAPVLDVGQKVFGENRVQEAMERWGPHRQ--GLELRLIGPLQ 79
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK E V FDVIET+ REK A +L+ E+ + + +Y+QVN G E QK+G+ P
Sbjct: 80 TNKAREAVGFFDVIETLDREKLARVLAEEVQRAGKAPRLYVQVNVGQETQKAGVAPGDAD 139
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR Y L +EGLMCIPP +P PHF L+ IA L KLSMGM+ DFE+AIA
Sbjct: 140 SFIGACRTTYGLTIEGLMCIPPFDQDPAPHFAQLASIAERNGLDKLSMGMSDDFEIAIAQ 199
Query: 204 GATSVRIGSGIFGERPCQ 221
GATSVR+GS +FG R
Sbjct: 200 GATSVRVGSALFGSRVYS 217
>gi|310659185|ref|YP_003936906.1| hypothetical protein CLOST_1881 [Clostridium sticklandii DSM 519]
gi|308825963|emb|CBH22001.1| putative enzyme [Clostridium sticklandii]
Length = 231
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 16/233 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ ++I+ + +R D V+L+AVSK V ++I AL G ENK+Q
Sbjct: 1 MSQIKTNIEFVNEEIKKTLNKCERN-DDVTLIAVSKTVGVEQINEALDSGIENLGENKVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +KK + K+ IG+LQ+NKV I+ D+I ++ R A + +
Sbjct: 60 EVEKKHPNVSKK--AVWHLIGTLQTNKVKYIIKTIDLIHSLDRMPLAKEIDKRAKENDLV 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA---MGNPKPHFY 175
+ IQVN E K G++ FV + + GLM + P +P+F
Sbjct: 118 MDCLIQVNISLEDSKHGLLAEDVMAFVKEVSLNYNNIRIVGLMGMAPFEAEPEQTRPYFK 177
Query: 176 LLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E ++ LSMGMT D+++AI G+ +R+G+GIFGER
Sbjct: 178 KLKSLFDELSSLALENVEMKYLSMGMTNDYKIAIEEGSNMIRVGTGIFGERNY 230
>gi|54023739|ref|YP_117981.1| hypothetical protein nfa17710 [Nocardia farcinica IFM 10152]
gi|54015247|dbj|BAD56617.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 251
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 11/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +IE + + R DSV ++ V+K ++ + + G F E++ QEA
Sbjct: 20 LSANLDALLARIEAACRASGRAPDSVRMLPVTKFFPARDVAILHDLGLREFGESREQEAS 79
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI------KQ 116
K L + IG LQ NK + + +V E+ A+ L ++
Sbjct: 80 AKVAELSGLDGIAWHMIGRLQRNKAKVVARWAHTVHSVDSERLATALDRGACAALAAGER 139
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V +QV+ + + G++P + L + GLM IPP P F L
Sbjct: 140 AEPVRVLVQVSLDADPARGGVVPAELDALADRIAAAEGLQLAGLMAIPPLDAEPDSAFAL 199
Query: 177 L-----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +AR +LS GM+ D E AIA G+T VR+G+ + G RP
Sbjct: 200 LETLHTRILARHPGARELSAGMSGDLESAIAHGSTCVRVGTALMGARP 247
>gi|241761382|ref|ZP_04759470.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260753297|ref|YP_003226190.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283856197|ref|YP_161877.2| alanine racemase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374289|gb|EER63786.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552660|gb|ACV75606.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283775193|gb|AAV88766.2| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 232
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 83/213 (38%), Positives = 120/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L V + KIE +A +A R D + L+A+SK+ ++ ++ GQ +F EN++QEA KW
Sbjct: 20 LAVVRAKIEKAAKIAGRNPDDIELIAISKLHPAEAALPLIAEGQRVFGENRVQEALGKWP 79
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
P ++ D++L +G LQSNK V LFD I +V R L M + +IQ
Sbjct: 80 PLIKAHPDIRLHCVGQLQSNKAKTAVELFDAIHSVDRPSLIEALGRAMESTEKKPECFIQ 139
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G TK + CR L V GLM +PP +P P+F L ++A +
Sbjct: 140 VNIGEEDQKGGCDIADTKAILQQCRDAG-LPVIGLMSVPPLEVDPAPYFALTVKMAHDLA 198
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +S+GM+ D+ELAI GAT +R+G+ +FG R
Sbjct: 199 LPAVSIGMSADYELAITLGATHIRVGTALFGHR 231
>gi|159898076|ref|YP_001544323.1| alanine racemase domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891115|gb|ABX04195.1| alanine racemase domain protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 248
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +Q+I +A + R SV L+AV+K +I L+ G EN++QEA+
Sbjct: 8 LLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGENRVQEAE 67
Query: 63 KKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ---- 116
+K E + IG LQ NK LF +I ++ K A +L+ + ++
Sbjct: 68 EKIALQTPEALAQTRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIVDEEASVI 127
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---------YQLNVEGLMCIPPAM 167
+ LP+ +QVN E K G +++ GLM I P
Sbjct: 128 PQPLPILLQVNVSGERSKDGFELAGGVHNSAWLDFVGEVRAIAELPLIDLRGLMTIAPYS 187
Query: 168 GNP----KPHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +P F L E+ + + L++LSMGM+ DFE+AI G+T VR+G+ +FG
Sbjct: 188 DDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRVGTALFGA 247
Query: 218 R 218
R
Sbjct: 248 R 248
>gi|261419328|ref|YP_003253010.1| alanine racemase domain protein [Geobacillus sp. Y412MC61]
gi|297530702|ref|YP_003671977.1| alanine racemase domain protein [Geobacillus sp. C56-T3]
gi|319766144|ref|YP_004131645.1| alanine racemase domain protein [Geobacillus sp. Y412MC52]
gi|261375785|gb|ACX78528.1| alanine racemase domain protein [Geobacillus sp. Y412MC61]
gi|297253954|gb|ADI27400.1| alanine racemase domain protein [Geobacillus sp. C56-T3]
gi|317111010|gb|ADU93502.1| alanine racemase domain protein [Geobacillus sp. Y412MC52]
Length = 224
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K VD+K+ L G EN+ +
Sbjct: 1 MTVRDNLAAIRREIEAACARVGRDPAGVRIVAVTKYVDAKRALEVLDAGIADLGENRSDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K R FIG+LQS KV +I+ D I ++ R A + + R +
Sbjct: 61 LIEKHA--RIGNQATWHFIGTLQSRKVKDIIDKVDYIHSLDRLSLAKEIE---KRAVRPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G+ P +T F+ R ++ V GLM + P G+ ++
Sbjct: 116 KCFVQVNVSGEATKHGLAPEETIPFIEQLRAFSRIEVVGLMTMAPHTGDEAILRACFRQL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 176 RMLKERVQALGMAHAPCTELSMGMSNDYTIAIEEGATFVRIGSALVGS 223
>gi|329767996|ref|ZP_08259507.1| YggS family pyridoxal phosphate enzyme [Gemella haemolysans M341]
gi|328838481|gb|EGF88089.1| YggS family pyridoxal phosphate enzyme [Gemella haemolysans M341]
Length = 225
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + ++I + R D V L+AV+K V ++ A+ FAEN+ Q
Sbjct: 1 MNVRENFETITKEIAETCEKVGRNADEVKLIAVTKYVTDARVEEAIEAKITDFAENRPQN 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++ D IGSLQ+ KV ++++ D + R+ A + K+ +
Sbjct: 61 YVERKSKYS---DKAWHLIGSLQTRKVRDVINEVDYFHALDRDSLAKEIEKRAEKE---I 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ ++T DF+ Q ++ V GLM + P + + + F L
Sbjct: 115 NCFVQVNVSGEESKHGLTADETVDFIKSLEQYSKIKVVGLMTMAPFVDDEDVLRNCFRKL 174
Query: 178 SEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFG 216
++ E K + LSMGM+ D++ AI GAT +R+G+ + G
Sbjct: 175 RQLRDEVKELELPYAPCEFLSMGMSNDYKTAIEEGATHIRVGTALVG 221
>gi|113869059|ref|YP_727548.1| hypothetical protein H16_A3105 [Ralstonia eutropha H16]
gi|113527835|emb|CAJ94180.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 231
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ Q+I +A A R ++L+AVSK V +IR A + GQV F EN +Q
Sbjct: 1 MSVIAANLQAVHQRIAAAAQQAGRQPADIALLAVSKTVPPDRIRAAYAAGQVAFGENYVQ 60
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K +Q FIG LQSNK + FD + V R + A LS +
Sbjct: 61 EGVDKIAALADLRHRLQWHFIGPLQSNKTRLVAEHFDWVHAVDRLRIAERLSAQRPAGMA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSG+ P + L + GLM IP +P +
Sbjct: 121 ALQVCIQVNISGEASKSGVAPAEVPGLAHAVAALPGLRLRGLMAIPEPEHDPAAQRRPFA 180
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 181 AMRAMLQALRTDGLDLDTLSMGMSGDMEAAIAEGATLVRIGTAIFGARQYP 231
>gi|148653680|ref|YP_001280773.1| alanine racemase domain-containing protein [Psychrobacter sp.
PRwf-1]
gi|148572764|gb|ABQ94823.1| alanine racemase domain protein [Psychrobacter sp. PRwf-1]
Length = 238
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 100/236 (42%), Gaps = 20/236 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L Q Q+IE + V+L+AVSK + I GQ F EN LQEA
Sbjct: 5 TLVQNWQQVTQQIEAARQHCAGQP--VTLLAVSKTKPADMIVTLAQAGQKHFGENYLQEA 62
Query: 62 KKKWIPL------------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
K + + +IG +Q NK +I FD + T+ R+ A L
Sbjct: 63 VDKQHQVAKLLTKSEDGDVSSAPPIVWHYIGHIQRNKTKDIAEAFDWVHTIERDIIAKRL 122
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-- 167
+ L V IQVN +E KSG +P++ + + + L + GLM IP
Sbjct: 123 DAQRPSHLPKLNVLIQVNIDHEESKSGCLPDELEALIASIKGYGNLCLRGLMIIPSKEGI 182
Query: 168 GNPKPHFYLLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L +I + LSMGM+ D AI G+T VR+GS IFG R
Sbjct: 183 DAFERTKQLFKQIKQAHPDLPNWDTLSMGMSADMADAIEQGSTMVRVGSAIFGARD 238
>gi|297624874|ref|YP_003706308.1| alanine racemase domain-containing protein [Truepera radiovictrix
DSM 17093]
gi|297166054|gb|ADI15765.1| alanine racemase domain protein [Truepera radiovictrix DSM 17093]
Length = 237
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 6/214 (2%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L K ++E + A R +V+LVAV+K ++++ L G + E+++QE + K
Sbjct: 4 LDAVKTRLERACARAGRDPRAVTLVAVTKGRSAEEVEAQLLGRGHLTLGESRVQEWRSKA 63
Query: 66 IP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ W + FIG+LQ+NKV + + +++ + A L +++ V++
Sbjct: 64 ARLAERGWAPEWHFIGNLQTNKVKYCAPFYA-LHSLNSRRLAEALEAFGARRAHRFRVFV 122
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+VN E K G+ + + V + L V GLM I P +P +P F L E+
Sbjct: 123 EVNVAGEASKQGVPLAEAEALVRYAQGLPHLEVLGLMTIAPYSHDPEAVRPVFRALRELR 182
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L LSMGM+ DFE+AI GAT VR+GS +F
Sbjct: 183 DRLALEALSMGMSGDFEVAIEEGATHVRVGSALF 216
>gi|319442517|ref|ZP_07991673.1| alanine racemase domain protein [Corynebacterium variabile DSM
44702]
Length = 258
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 24/242 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + +++ +A A R V L+ VSK V +++R A+ G AENK QE
Sbjct: 17 DFRARWDAVRARVDEAARAAGRDPAEVRLLPVSKTVPVERLRPAVDAGMTELAENKPQEI 76
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS---- 117
+K + + V+ IG LQ+NK + + + + A L +
Sbjct: 77 GRKAVEMADL-PVRWVAIGHLQTNKAKIVAEHAAEFQALDSVRLAEALQRRLEALDETAD 135
Query: 118 -------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
R L V +QVNT E K+G P + + + +L V G M + +
Sbjct: 136 GPADGPARTLDVLVQVNTSGEDTKTGASPEEVDAILEAAARCDRLRVRGFMTVAVHSEDE 195
Query: 171 KPHFYLLSEIARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ + LT+LSMGM+ DF LAIA GAT VR+G+ +FG R
Sbjct: 196 AEVRACFAQLRGILERARERAVVDPVLLTELSMGMSGDFPLAIAEGATCVRVGTALFGAR 255
Query: 219 PC 220
Sbjct: 256 DY 257
>gi|256844915|ref|ZP_05550373.1| proline synthetase associated protein [Fusobacterium sp. 3_1_36A2]
gi|256718474|gb|EEU32029.1| proline synthetase associated protein [Fusobacterium sp. 3_1_36A2]
Length = 223
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + +
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKGELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|217077921|ref|YP_002335639.1| hypothetical protein THA_1872 [Thermosipho africanus TCF52B]
gi|217037776|gb|ACJ76298.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
Length = 227
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + I+N R + LVAVSK + ++ A G IF EN Q
Sbjct: 1 MSEIYKRYMEVVDSIKNKCKQIDRDYSKIKLVAVSKTFPVEVLKEAYDSGINIFGENYAQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + + K+++++ FIG +Q NK+ IV + +I +VSR + ++ K +
Sbjct: 61 EL-RDKSKVLKDYNIEWHFIGRIQINKLKYIVPVASLIHSVSRIEEIEVIDKISKKLGKI 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ IQVN E KSG+ P Q D + + + V GLM + P N + + +
Sbjct: 120 QEILIQVNVSGEETKSGVKPEQLIDLIEKSKLYENVKVIGLMTMAPFTDNEEIIRNVFKK 179
Query: 180 ---IAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +LSMGM+ D+ +A+ GAT +RIGS IFG R
Sbjct: 180 ARVLRDNVSKEFPDVVELSMGMSNDYLIALEEGATILRIGSKIFGSR 226
>gi|330823083|ref|YP_004386386.1| hypothetical protein Alide2_0451 [Alicycliphilus denitrificans
K601]
gi|329308455|gb|AEB82870.1| protein of unknown function UPF0001 [Alicycliphilus denitrificans
K601]
Length = 240
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 105/234 (44%), Gaps = 15/234 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ LQ ++I + A RP SV+L+AVSK ++ + A GQ F EN +Q
Sbjct: 3 TIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAEAVHAAALAGQRAFGENYIQEA 62
Query: 60 -EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E L +Q IG +QSNK + FD +TV R K A LS +
Sbjct: 63 VEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVN KSG+ P+ + +L + G+M IP P +
Sbjct: 123 PLMVCIQVNVDGGATKSGVGPHDAAVLAEAVARLPRLVLRGVMSIPDDAPTFEAQRALHE 182
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K LSMGMT D E A+A+G+T VR+GSG+FG R
Sbjct: 183 RAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGARQY 236
>gi|327405566|ref|YP_004346404.1| hypothetical protein Fluta_3597 [Fluviicola taffensis DSM 16823]
gi|327321074|gb|AEA45566.1| protein of unknown function UPF0001 [Fluviicola taffensis DSM
16823]
Length = 220
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++L KQ+I V LVAVSK + ++ A GQ +F ENK+QE
Sbjct: 1 MSLADRLTQLKQEI----------PKDVVLVAVSKTKPAALVQEAYDAGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW D++ IG LQ+NKV I +I +V K ++ + K +R +
Sbjct: 51 LVDKWE--VLPKDIEWHLIGHLQTNKVKFIAPFVSLIHSVDSFKLLQEINKQGEKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P +Q + E K G + ++ + +++ GLM + + N +
Sbjct: 109 PCLLQFHIAQEETKFGFSFEEVEELLQNKEFIEMNHVSITGLMGMASFVENQEQIQDEFR 168
Query: 179 EIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +SMGM+ D++LAI G+T +R+GS +FG R
Sbjct: 169 NLHNYFAIIKSNYFKYNPDFKVISMGMSGDYKLAIDEGSTMIRVGSSLFGSR 220
>gi|302326933|gb|ADL26134.1| conserved hypothetical protein TIGR00044 [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 250
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 30/249 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I+ + +A R ++SV LV VSK ++ + A++ G F EN++QEA+
Sbjct: 1 MREHLAALEARIDEACKIAGRSRESVKLVWVSKFHPAEAVENAIALGATDFGENRVQEAE 60
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IK 115
K+ R D V+ IG +QSNK+ + + D I +++ + L
Sbjct: 61 LKFSEPRTAKDGSRVRCHVIGPVQSNKLKKAALVADCIHSIASIEAVEKLEKVCAAAANG 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDF------------VILCRQKYQLNVEGLMCI 163
Q + L + QVN G E KSG+ ++ + F L GLM I
Sbjct: 121 QGKVLDILFQVNAGEEETKSGLDVHEAEAFLEDLEKRAGAAADGKSENFPHLRFRGLMTI 180
Query: 164 PPAM---GNPKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGS 212
+ + F L + + +LSMGMT D E+AI G+T +R+G+
Sbjct: 181 GKNTGVAEDSRECFAFLRGLRDKFLAKGGAFAAFDQLSMGMTGDLEVAIEEGSTMIRVGT 240
Query: 213 GIFGERPCQ 221
+FGER
Sbjct: 241 ALFGERDYS 249
>gi|261415781|ref|YP_003249464.1| alanine racemase domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372237|gb|ACX74982.1| alanine racemase domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 257
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 30/249 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I+ + +A R ++SV LV VSK ++ + A++ G F EN++QEA+
Sbjct: 8 MREHLAALEARIDEACKIAGRSRESVKLVWVSKFHPAEAVENAIALGATDFGENRVQEAE 67
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IK 115
K+ R D V+ IG +QSNK+ + + D I +++ + L
Sbjct: 68 LKFSEPRTAKDGSRVRCHVIGPVQSNKLKKAALVADCIHSIASIEAVEKLEKVCAAAANG 127
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDF------------VILCRQKYQLNVEGLMCI 163
Q + L + QVN G E KSG+ ++ + F L GLM I
Sbjct: 128 QGKVLDILFQVNAGEEETKSGLDVHEAEAFLEDLEKRAGAAADGKSENFPHLRFRGLMTI 187
Query: 164 PPAM---GNPKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGS 212
+ + F L + + +LSMGMT D E+AI G+T +R+G+
Sbjct: 188 GKNTGVAEDSRECFAFLRGLRDKFLAKGGAFAAFDQLSMGMTGDLEVAIEEGSTMIRVGT 247
Query: 213 GIFGERPCQ 221
+FGER
Sbjct: 248 ALFGERDYS 256
>gi|23098934|ref|NP_692400.1| hypothetical protein OB1479 [Oceanobacillus iheyensis HTE831]
gi|22777162|dbj|BAC13435.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 223
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L ++ I + A R + + L+AV+K V ++ + A++ G EN+ +
Sbjct: 3 DVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNEGF 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ ++ + + FIGSLQS KV +I++ D I ++ R+ A ++ + + +
Sbjct: 63 LEKYNEIQNQVN--WHFIGSLQSRKVKDIINQVDFIHSLDRKSLAKEIN---KRATHPVN 117
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++QVN E K GI P++ F+ + + GLM + P + +P + F L
Sbjct: 118 CFVQVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMAPHVEDPEDVRSVFKKLR 177
Query: 179 EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFG 216
++ E + LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 178 DLRDEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG 223
>gi|124002828|ref|ZP_01687680.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123992056|gb|EAY31443.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 226
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 26/236 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ K+ + LVAVSK ++ I+ G F ENK+QE
Sbjct: 1 MNIAQNIENINTKLT---------PTNTKLVAVSKTKPAEMIQKTYDTGWRRFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ IG LQSNKV I +I V K ++ + K R +
Sbjct: 52 MVEKHE--ILPKDIEWHLIGHLQSNKVKYIAPFVSLIHGVDSMKLLKEINKQAAKNERVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G+ + K+ ++V G+M + +
Sbjct: 110 QCLLQLHIAEEDTKFGLSFAEAKEILASQELTTLKNVHVVGVMGMATFTDDKTQVRNEFR 169
Query: 179 EI---ARECK----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E K L ++SMGM+ D+E+AI G+T VR+GS IFG R
Sbjct: 170 NLKTFFDEIKTEVGHLTNVDLQEVSMGMSGDYEIAIEEGSTMVRVGSAIFGTRTYN 225
>gi|310642975|ref|YP_003947733.1| alanine racemase domain protein [Paenibacillus polymyxa SC2]
gi|309247925|gb|ADO57492.1| Alanine racemase domain protein [Paenibacillus polymyxa SC2]
Length = 233
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +++ +IE + + R +D V+++AV+K V + + L EN+ Q+
Sbjct: 1 MSLEERIKEVNARIEAACARSGRSRDEVNVIAVTKYVSAAAMASVLDNDLEHVGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AADKWSKLGDR--GTWHFIGHLQTNKVKDVIGKFKFIHSLDRLSLAQELDKKAAALGLRV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN EI K G+ P F+ R+ ++V GLM + P +P +P F L
Sbjct: 119 KAFVQVNISGEISKYGLSPETVAPFLEQIRELEHVDVIGLMTMAPHEEDPEHTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + LSMGM+ DFE+A+ GAT +R+GS + G
Sbjct: 179 RELRDRLNGQALTREPIVHLSMGMSNDFEVAVEEGATWLRLGSVLVG 225
>gi|302847524|ref|XP_002955296.1| hypothetical protein VOLCADRAFT_65697 [Volvox carteri f.
nagariensis]
gi|300259368|gb|EFJ43596.1| hypothetical protein VOLCADRAFT_65697 [Volvox carteri f.
nagariensis]
Length = 250
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +++ ++ A R + SV LVAVSK + ++ A GQ +F EN +QE K
Sbjct: 10 LQDVLTRMKQASERAGRTQ-SVRLVAVSKTKPVEALQEAYDAGQRVFGENYVQEMLDKAP 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-----QSRFLP 121
DVQ FIG LQSNKV +V + V + L +++ L
Sbjct: 69 A--LPSDVQWHFIGHLQSNKVKAVVENVPNLAMVETVDSTKLADKLNRAVEVAGRTQPLA 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V +QVNT E K G+ P + Q +L + GLM I + +P +
Sbjct: 127 VMVQVNTSGEESKFGVEPGECVALAKHIVQSCPKLRLAGLMTIGMPDYSSRPENFECLAD 186
Query: 178 --SEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A E + +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 187 CRMKVAAELGMVPEHLELSMGMSGDFEQAIEMGSTNIRVGSTIFGARDYS 236
>gi|296331114|ref|ZP_06873588.1| hypothetical protein BSU6633_08431 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674269|ref|YP_003865941.1| hypothetical protein BSUW23_07920 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151758|gb|EFG92633.1| hypothetical protein BSU6633_08431 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412513|gb|ADM37632.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 230
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVEYLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + D + FIGSLQS K +V+ I ++ R A + + +
Sbjct: 61 LLRKQE--MIKGDPEWHFIGSLQSRKAKAVVNSVSYIHSLDRLSLAKEIEK---RAEGTV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVNT E K G+ + F+ + V GLM + P + F L
Sbjct: 116 QCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHIVVAGLMTMAPLTDDQDEIRSCFRAL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQELKQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVGN 223
>gi|206561630|ref|YP_002232395.1| hypothetical protein BCAL3291 [Burkholderia cenocepacia J2315]
gi|198037672|emb|CAR53615.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 232
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 108/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLDSVHRRIADAARAAGRDPATVALLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSG+ P + L + GLM IP +P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDPDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 181 ALRALFDTLRAGGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYS 231
>gi|225460901|ref|XP_002278892.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera]
Length = 245
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A + R D V +VAVSK IR G F EN +QE +K
Sbjct: 20 RVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQ--LPE 77
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----KQSRFLPVYIQVNT 128
D++ FIG LQSNKV +++ + V + + + + L V +QVNT
Sbjct: 78 DIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRRKPLKVLVQVNT 137
Query: 129 GYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLS---EIAR 182
E+ KSG+ P+ + + L GLM +P P+ LL+ E+ +
Sbjct: 138 SGEVSKSGVEPSGCVELAKHVKLGCPNLEFSGLMTIGMPDYSSTPENFRRLLNCRIEVCK 197
Query: 183 ECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 198 ALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPREYP 240
>gi|186682117|ref|YP_001865313.1| alanine racemase domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186464569|gb|ACC80370.1| alanine racemase domain protein [Nostoc punctiforme PCC 73102]
Length = 222
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + SV L+AVSK V + IR A S G FAE+++QEA
Sbjct: 4 SISERIVSIRSSL----------PTSVKLIAVSKQVPVEAIRFAYSAGIRDFAESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG LQSNK + + F I +V K A L +
Sbjct: 54 ASKQAELHDLPDITWHFIGHLQSNKAKKAIEQFPWIHSVDNLKLAQRLDQLAQQLRVSPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
V +QV + KSG + + Q L ++GLM IPP+ N +
Sbjct: 114 VCLQVKILPDPNKSGWSVPELLADLPTLDQYKNLQIQGLMTIPPSGLNNPEILNVFNLNR 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A++ K+ +LSMGM+ D+ELA+ +GAT VR+G+ +FG+R
Sbjct: 174 ELAKKIQEQNWSHIKMQQLSMGMSGDYELAVQAGATMVRLGTILFGDR 221
>gi|325103660|ref|YP_004273314.1| alanine racemase domain protein [Pedobacter saltans DSM 12145]
gi|324972508|gb|ADY51492.1| alanine racemase domain protein [Pedobacter saltans DSM 12145]
Length = 236
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 99/232 (42%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ K +IE V L+AVSK + I A + GQ IF EN++QE
Sbjct: 1 MSITDNIKRLKNEIETL---------DVKLIAVSKTKPVEDILEAYNAGQRIFGENQVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ D+Q IG LQ+NKV I +I +V K ++ K +R +
Sbjct: 52 MAE--KEASLPKDIQWHLIGHLQTNKVKYIAPFVSLIHSVDSIKLLKEINKYAEKNNRII 109
Query: 121 PVYIQVNTGYEIQKSG--IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G + + + GLM I N K
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAIELLRSEEFQHMKNVRIVGLMGIASNTENEKQIKEEFY 169
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ +E ++SMGM+ D+ +AI G+T VRIG+ IFG+R
Sbjct: 170 ELKTLFEGIKTSFFRKEDSFKEISMGMSSDYNIAIEQGSTMVRIGNDIFGKR 221
>gi|189460455|ref|ZP_03009240.1| hypothetical protein BACCOP_01096 [Bacteroides coprocola DSM 17136]
gi|189432841|gb|EDV01826.1| hypothetical protein BACCOP_01096 [Bacteroides coprocola DSM 17136]
Length = 222
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++ +V LVAVSK ++ I A S GQ IF E+K QE
Sbjct: 1 MDIQANLKEVIAEL----------PTNVRLVAVSKFHPAEAIEAAYSAGQRIFGESKEQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ FIG LQ+NKV I +I K ++ + K R +
Sbjct: 51 LSGKHEQ--LPKDIEWHFIGHLQTNKVKYIAPYIAMIHAADSYKLLVEINKQAAKHERTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P ++++ E K G + ++ + + + G+M + +
Sbjct: 109 PCLLEIHIAQEESKYGFTFDSCREMLRTGEWKNLNNICIAGVMGMATNTEDETEIANEFH 168
Query: 179 EIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + ++SMGM+ D+ +A+ G+T VR+GS IFG+R
Sbjct: 169 SLKVFFDELKQEFFSDRPEFKEISMGMSHDYPIAVKEGSTMVRVGSKIFGDRNY 222
>gi|93005125|ref|YP_579562.1| hypothetical protein Pcryo_0294 [Psychrobacter cryohalolentis K5]
gi|92392803|gb|ABE74078.1| Protein of unknown function UPF0001 [Psychrobacter cryohalolentis
K5]
Length = 276
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q K ++ + R SV+L+AVSK ++ + GQ F EN LQEA
Sbjct: 51 LTENWQQVKTQVVQACEQTLRAPSSVTLLAVSKTKSAEMVATLARQGQHDFGENYLQEAI 110
Query: 63 KKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +IGS+Q NK +I FD ++T+ R+ A L+ + +
Sbjct: 111 EKIQLLREQVGCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNDQRPAELPP 170
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSG +P Q + + + +L + GLM IP F +
Sbjct: 171 LNVLIQINIDNEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANTDA--FKRTKQ 228
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LSMGM+ D AIASG T VR+G+ IFG R
Sbjct: 229 LFDDIKRTHPELSQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGAR 275
>gi|297799306|ref|XP_002867537.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata]
gi|297313373|gb|EFH43796.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata]
Length = 244
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 100/234 (42%), Gaps = 16/234 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + +A R + V ++AVSK IR G F EN +QE
Sbjct: 9 TVATALRSVILRARKAAEQVGRDPERVRVLAVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QS 117
+ D++ F+G LQSNK +++ + V + +
Sbjct: 69 ID--KAPQLPEDIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSTLGR 126
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V +QVNT E+ KSGI P+ + + + L GLM I P +
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKQHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 177 L-----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++ + + + LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 187 TLSNCRADVCKALGMAEDRFELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYP 240
>gi|325288176|ref|YP_004263966.1| hypothetical protein Celly_3279 [Cellulophaga lytica DSM 7489]
gi|324323630|gb|ADY31095.1| protein of unknown function UPF0001 [Cellulophaga lytica DSM 7489]
Length = 222
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 25/233 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K + ++V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MSIKQSLLEIKNSL----------PETVTLVAVSKTKPVSDLEEAYAAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +Q+NKV + +I V K ++ + K +R +
Sbjct: 51 MTQKWEVMPK--DIQWHMIGHVQTNKVKYMAEYVSLIHGVDSLKLLKEINKQAKKYNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G+ + V K N++ GLM + N
Sbjct: 109 NCLLQMHIAEESTKFGLDLEELNSLVSSDVFKTLENIKVVGLMGMATFTDNQNQVKKEFG 168
Query: 179 EIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D+++AI G+T VRIGS IFG R
Sbjct: 169 TLKEVFSSLQSTKSTNLDVKILSMGMSGDYKIAIDQGSTMVRIGSSIFGSRNY 221
>gi|157372264|ref|YP_001480253.1| alanine racemase domain-containing protein [Serratia proteamaculans
568]
gi|157324028|gb|ABV43125.1| alanine racemase domain protein [Serratia proteamaculans 568]
Length = 235
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/233 (30%), Positives = 105/233 (45%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ + +I +A R + V+L+AVSK I A++ GQ F EN +Q
Sbjct: 1 MSTIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQ 60
Query: 60 ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ + + + + FIG LQSNK + F TV R + AS L+ +
Sbjct: 61 EGVDKVQHFAAQPEGATLDWHFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPAD 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ+N E KSGI+ + L + GLM IP + + +
Sbjct: 121 MPPLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPQEDYQSQLAV 180
Query: 177 LSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FGQMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYS 233
>gi|302391655|ref|YP_003827475.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
gi|302203732|gb|ADL12410.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
Length = 232
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 16/234 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L+ +++I +A A R D + LVAV+K ++I+ + V E+++Q
Sbjct: 1 MSEIKDNLKQVQKRIAAAAKRAGRDSDEIKLVAVTKTRGIEEIKEVIEADVVDLGESRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQS 117
E + K+ + ++ + IG LQ NKV I+ + I ++ + A ++
Sbjct: 61 ELRDKYDNISQKIN--WHMIGHLQRNKVKYIMRMERCNLIHSMDSMRLAKKINKRAGMAD 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHF 174
R + V +Q+N + K G+ P +T D++ + L V+GLM + P +P+F
Sbjct: 119 RVMNVLVQINVAGDENKFGLEPEETIDYLRKVAEFENLQVKGLMTMVPYVDDTEQVRPYF 178
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E+ E K + +LSMG+T DFE+AI GAT VR+GS IFG R
Sbjct: 179 RELKELFEEVKRAEIPNIEMQELSMGITNDFEVAIEEGATIVRVGSAIFGPREY 232
>gi|295135068|ref|YP_003585744.1| alanine racemase [Zunongwangia profunda SM-A87]
gi|294983083|gb|ADF53548.1| alanine racemase [Zunongwangia profunda SM-A87]
Length = 219
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ ++ D+V LVA+SK ++ + A GQ IF ENK+QE
Sbjct: 1 MNIAENIKKYRDQL----------PDTVDLVAISKTKPNEDLMEAYEVGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW D++ +G +Q NKV + +I V K ++ + K R +
Sbjct: 51 MTDKWEA--LPKDIEWHMVGHVQRNKVKYMAPYVGLIHAVDSLKLLKEINKQAKKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K GI + ++ + + V GLM + N +
Sbjct: 109 RCLLQIKIAEEDSKFGISAGEAEEILQSETYKTFENVAVVGLMGMATHTDNDEKVAEEFD 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + +LSMGM+ D+++A+ G+T VRIGS IFG R
Sbjct: 169 YLHSVFKDFRVKYPAIKELSMGMSGDYKIAVKHGSTMVRIGSSIFGARNYN 219
>gi|117928222|ref|YP_872773.1| hypothetical protein Acel_1014 [Acidothermus cellulolyticus 11B]
gi|117648685|gb|ABK52787.1| Protein of unknown function UPF0001 [Acidothermus cellulolyticus
11B]
Length = 244
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++++ + A R + ++++AV+K + IR+ G EN+ QEA+
Sbjct: 14 LAANLAALRRRVIAACRNAGRDPEEITVIAVTKTFPAADIRLLHELGVHDVGENRDQEAR 73
Query: 63 KKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K ++ FIG+LQ NK + ++ +V R + L+ ++ R
Sbjct: 74 AKRAELAAGGFDPDLLRWHFIGALQVNKCRSVARYAAMVHSVDRAEQLPRLAAGARERGR 133
Query: 119 FLPVYIQVNTGYEIQK--SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP +QVN E+ G+ P L L + G+M I P G P F
Sbjct: 134 VLPCLVQVNLDPEVSPGRRGVPPADALTLADLLADTPGLELRGVMGIAPLDGEPAAAFAT 193
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+++AR+ + T LS GM+ D E AIA+GAT VRIG+ + G R
Sbjct: 194 LAQVARKLQARYPAATVLSAGMSGDLEAAIAAGATHVRIGAALLGTR 240
>gi|134294804|ref|YP_001118539.1| alanine racemase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134137961|gb|ABO53704.1| alanine racemase domain protein [Burkholderia vietnamiensis G4]
Length = 232
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 107/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L + FIG LQSNK + FD + +V R K A LS + Q
Sbjct: 61 ESIDKIDALADLRSALEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLSEQRPPQLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V IQVN E KSG+ P + L + GLM IP +
Sbjct: 121 PLNVCIQVNISGEESKSGVAPADVAELARAVAALPALRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 181 ALHALFDTLRAHGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|218262755|ref|ZP_03477113.1| hypothetical protein PRABACTJOHN_02792 [Parabacteroides johnsonii
DSM 18315]
gi|218223157|gb|EEC95807.1| hypothetical protein PRABACTJOHN_02792 [Parabacteroides johnsonii
DSM 18315]
Length = 222
Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK ++ ++ A GQ +F E++ QE
Sbjct: 1 MSITENITRLKASL----------PAGVTLVAVSKFHPAEALQEAYDAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQSNKV +I I ++ K ++ + K R +
Sbjct: 51 LTA--KQKVLPSDIEWHFIGPLQSNKVKDIAPFIHTIHSIDSLKLLQEVNKQAAKHGRIV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V ++++ E K G P++ ++ + L + GLM + N
Sbjct: 109 RVLLEIHVAQEEAKHGFSPDECRELLHSLSPEALPNLRICGLMGMATNTDNTSQIQDEFH 168
Query: 179 EIAR---ECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I + E K +LSMGM+ D+ +AI G+T +RIG+ IFGER
Sbjct: 169 KIHKLFTELKSSVFKGDEYFCELSMGMSHDYPIAIREGSTMIRIGTSIFGEREY 222
>gi|254429950|ref|ZP_05043657.1| conserved hypothetical protein TIGR00044 [Alcanivorax sp. DG881]
gi|196196119|gb|EDX91078.1| conserved hypothetical protein TIGR00044 [Alcanivorax sp. DG881]
Length = 229
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L ++I + R SV L+AVSK + ++ GQ F EN LQ
Sbjct: 1 MTDVKSPLLHIDEQINALCARSGRDPHSVQLLAVSKTRTADELAQLADQGQRHFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + + FIG +QSNK +I + FD + +V R K A LS +
Sbjct: 61 EALDKIAA-LQGRGLVWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRGPDLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E KSG+ + L + GLM I P N + +
Sbjct: 120 LNVCLQVNVDDEASKSGVPLAGVAELAEQIEALPNLRLRGLMAI-PRADNTDGNRAAFRQ 178
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A L LSMGM+ D+ +AI GAT +R+G+ +FG R +
Sbjct: 179 LAMTLSQLRNTMPALDTLSMGMSADYAVAIEEGATVIRLGTALFGPRRPK 228
>gi|302389570|ref|YP_003825391.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
gi|302200198|gb|ADL07768.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
Length = 229
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K KI+++A + R + + +VAV+K + + I+ A+ G I EN++QEA+
Sbjct: 4 IQQNIEKLKLKIKHAAAKSGRSPEDIHIVAVTKTIPPETIQAAVDRGIKILGENRVQEAQ 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + D+ IG LQ NKV V LF +I++V + A+ + + + V
Sbjct: 64 QKVG--LVKGDISWHMIGHLQKNKVKYAVKLFSMIQSVDSYELAAEIDKRAGMLGKVMDV 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN G E K G + + + + V GLM I P +P +P F + E
Sbjct: 122 LIQVNIGREKTKFGAEYEEIPELIKKVSTLAHVKVRGLMAIAPFKEDPEDVRPFFRKMRE 181
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K ++ LSMGMT DF +AI G+ +RIG+GIFG R
Sbjct: 182 LFTKIKSQELENVEMSFLSMGMTHDFHIAIEEGSNMIRIGTGIFGPR 228
>gi|115378208|ref|ZP_01465380.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|115364796|gb|EAU63859.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
Length = 210
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 78/212 (36%), Positives = 108/212 (50%), Gaps = 6/212 (2%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L + ++ ++ RP +SV+L+AVSK+ IR A + GQ F EN Q
Sbjct: 1 MSQVAERLADIQARVASACARVGRPVESVTLIAVSKLKPGALIREAYAAGQRDFGENYAQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L ++ IG LQ+NK + + + R + A LS +
Sbjct: 61 ELRDKATELEDLAGLRWHAIGPLQTNKAKYVARVAQSFHALDRMEVARELS--KRRLEAP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
LP Y++VN G E KSG+ P FV R L +EGLM +PP +P+ HF
Sbjct: 119 LPCYVEVNLGGEQSKSGLTPEALGAFVDEARVLPGLRLEGLMALPPPTPDPEQARGHFRR 178
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSV 208
L E+ARE L+ LSMG T DFE AI GAT V
Sbjct: 179 LRELAREHGLSGLSMGTTHDFEQAIEEGATLV 210
>gi|298530633|ref|ZP_07018035.1| alanine racemase domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510007|gb|EFI33911.1| alanine racemase domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 248
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L ++KIE + + P V+LVAVSK +IR + GQV F EN +QE
Sbjct: 15 MADNLDKVRKKIEMALQKSADPAREVTLVAVSKRQPLDRIRALAAAGQVHFGENYVQEGL 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ F GSLQSNK I F ++ ++ K A L + + PV
Sbjct: 75 EKIKDLENL-EIKWHFTGSLQSNKARFIPGHFSLVHSLDSVKLARALQKKAAELGIVQPV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E+QK+G+ P+ + + + L+V+GLM +PP +P +P+F L +
Sbjct: 134 LIQVNLAGEVQKAGVDPDHVPELIQETGRMDHLDVQGLMLMPPLADDPEESRPYFTGLRK 193
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +L LSMGM++DF A+ GAT VR+GS + G RP
Sbjct: 194 MRDTLEQETGRRLPHLSMGMSQDFVQAVEEGATLVRVGSLLLGPRP 239
>gi|312795172|ref|YP_004028094.1| hypothetical protein RBRH_01661 [Burkholderia rhizoxinica HKI 454]
gi|312166947|emb|CBW73950.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 234
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + L ++I A A R SV L+AVSK + IR A + GQ F EN +
Sbjct: 1 MSTLIAPHLDEVCRRIAAVAAAAGRDPASVQLLAVSKTFPADAIRAAHAAGQQAFGENYV 60
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEA K ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 QEALDKIAALQPLRASLEWHFIGPLQSNKTRPVAEQFDWVHSVDRLKIAHRLSEQRPTHL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHF 174
L V +QVN E K G+ P+ +L + GLM IP + +
Sbjct: 121 PPLNVCVQVNVSGEASKHGVAPDDVATLARDVAALPRLRLRGLMSIPEPVSGLHAQRAPH 180
Query: 175 YLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ L LSMGM+ D + AI GAT VR+G+ IFG R T
Sbjct: 181 RRLRELFDAVNAQGLGLDTLSMGMSADLDAAILEGATIVRVGTAIFGPRTYPT 233
>gi|289547896|ref|YP_003472884.1| alanine racemase domain protein [Thermocrinis albus DSM 14484]
gi|289181513|gb|ADC88757.1| alanine racemase domain protein [Thermocrinis albus DSM 14484]
Length = 225
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ ++I + A R ++ V+L+ SK D+ +I+ A CG IF E+++Q+
Sbjct: 2 ICERIERVLERIHKACQRAGRREEEVTLLVASKYADAHQIKEAFGCGVSIFGESRVQDFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ L ++ FIG LQSNKV I+ ++I ++ R A + K + V
Sbjct: 62 KKYEQLASL-PIRWHFIGRLQSNKVKYIIEKVELIHSLDRNSLAEEIDARAKKAGKRQDV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E K G+ P + F + V GLMCIPP +P +P+F L E
Sbjct: 121 LIEVNVGEEETKGGVAPQELDRFFQYVLSLEGIRVLGLMCIPPYKEDPDQVRPYFRSLRE 180
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + L LSMGM+ DFE+AI GAT VR+GS I
Sbjct: 181 MKERLEREYGVALPHLSMGMSHDFEVAIEEGATIVRLGSII 221
>gi|297621435|ref|YP_003709572.1| hypothetical protein wcw_1209 [Waddlia chondrophila WSU 86-1044]
gi|297376736|gb|ADI38566.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 225
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 13/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + I N+ A R VSL+AV+K + + A G F EN++QE
Sbjct: 1 MSVIDNYHALISDIGNTVRKAGRDPSEVSLIAVTKGFSLEHVLPAYKAGARGFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K D++ IG+LQ NKV +++ F +I +V + A +S + +
Sbjct: 61 ALPKIEK--APKDIEWHLIGTLQKNKVRKVIGKFSLIHSVDSLELAQKISETSLVCNTVT 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
PV +Q NT E K G+ + + ++++GLM I P + + + F L
Sbjct: 119 PVLLQANTSGEQSKHGLQSEEWIANWDSLLELEGIDLQGLMTIAPFVDDEKVIRRCFRAL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + L LSMGM+ D+ LAI GAT +RIGS IF
Sbjct: 179 RQLRDRLQAMAGNKCTLKHLSMGMSHDYRLAINEGATQLRIGSAIF 224
>gi|126661816|ref|ZP_01732815.1| hypothetical protein FBBAL38_00655 [Flavobacteria bacterium BAL38]
gi|126625195|gb|EAZ95884.1| hypothetical protein FBBAL38_00655 [Flavobacteria bacterium BAL38]
Length = 225
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 101/237 (42%), Gaps = 31/237 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L K ++ V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MLIAQNLTEIKSQL----------PKQVTLVAVSKTKPVADLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + K D++ IG +Q+NKV + +I V K ++ + K +R +
Sbjct: 51 MTDKWEDMPK--DIEWHMIGHVQTNKVKYMAPYVSLIHGVDSLKLLQEINKQAAKNNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--------VILCRQKYQLNVEGLMCIPPAMGNPKP 172
+QV E K G+ + ++ + + + GLM + N
Sbjct: 109 DCLLQVYIAEEESKFGLDEQELEEMLNKLLDSARSDNKTLKNIRIVGLMGMATFTENKDQ 168
Query: 173 HFYLLSEIA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C+L LSMGM+ D++LAI+ G+T VRIGS IFG R
Sbjct: 169 IEKEFKHLKTIFDKHKTLNTEHCQLNTLSMGMSGDYQLAISCGSTMVRIGSSIFGSR 225
>gi|51892365|ref|YP_075056.1| hypothetical protein STH1227 [Symbiobacterium thermophilum IAM
14863]
gi|51856054|dbj|BAD40212.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 230
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 13/231 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + ++I +A A R V LVAV+K ++I L+ G EN++Q
Sbjct: 1 MSKIMENVSLVLERIRRAAERAARDPAGVRLVAVTKTRTVEEIEAVLAAGIRDLGENRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + P ++ IG+LQ+NKV + + ++I ++ R S L + ++ R
Sbjct: 61 ELR-SKAPFLQDRQPTWHLIGTLQTNKVKQALEWAELIHSLDRSALLSELVKQAERRGRP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +QVN E K G+ P + F+ Q+ + V GLM + P NP +PHF
Sbjct: 120 VDALVQVNVSGEASKHGLPPGDLEPFLRQVAQQRWVRVRGLMTMAPLSDNPEDARPHFRR 179
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + + L LSMGM+ D+E+A+ GAT VR+G+ IFG R
Sbjct: 180 LRQLRDQMQALGIEGVSLEHLSMGMSGDYEVAVEEGATLVRVGTAIFGPRD 230
>gi|326802033|ref|YP_004319852.1| hypothetical protein Sph21_4672 [Sphingobacterium sp. 21]
gi|326552797|gb|ADZ81182.1| protein of unknown function UPF0001 [Sphingobacterium sp. 21]
Length = 221
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ K++ V+LVAVSK +I+ A GQ F EN++QE
Sbjct: 1 MSISDNLEKIKKE---------TDSVGVTLVAVSKTKSVTEIQEAYDAGQRTFGENQVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ D++ IG LQ+NKV + +I +V K ++ + K R +
Sbjct: 52 LRDKYE--VLPKDIEWHMIGHLQTNKVKYLAPFIKLIHSVDSLKLLQEINKQASKHDRII 109
Query: 121 PVYIQVNTGYEIQKSG--IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G + + GLM I N K
Sbjct: 110 DCLLQIYIADEETKFGLAYDEVIELLRSDEFSILKNVRIVGLMGIATNTDNEKLIKEEFY 169
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ +LSMGM+ D+++AI G+T +R+GS IFG R
Sbjct: 170 ELKTLFNGIKASFFRKDDAFKELSMGMSSDYKIAIEQGSTMIRLGSTIFGSR 221
>gi|119717282|ref|YP_924247.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
gi|119537943|gb|ABL82560.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length = 234
Score = 156 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 100/224 (44%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I + A R V LV V+K + +R+ G EN+ QEA+
Sbjct: 9 LAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVGENRHQEAE 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ FIG LQSNK + + DV+E+V R K L ++ + V
Sbjct: 69 SKAAECADL-GLRWHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQRRDVPVEV 127
Query: 123 YIQVNTGYE--IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QV+ +SG P Q L + GLM + P +P F L+++
Sbjct: 128 LLQVSLDPPGAEGRSGADPADLPALAGAVEQAAGLRLRGLMAVAPLGEDPAAAFARLADL 187
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R+ T LS GM+ D E A+ GAT VRIGS + G RP
Sbjct: 188 RRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRP 231
>gi|163756167|ref|ZP_02163282.1| hypothetical protein KAOT1_06507 [Kordia algicida OT-1]
gi|161323779|gb|EDP95113.1| hypothetical protein KAOT1_06507 [Kordia algicida OT-1]
Length = 222
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 67/232 (28%), Positives = 104/232 (44%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +K+Q ++QK+ V+LVAVSK ++ A + GQ +F ENK+QE
Sbjct: 1 MSITSKIQEYQQKL----------PTHVTLVAVSKTKPISDLQEAYTAGQRVFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW D+ IG +Q NKV + D+I V K ++ + K +R +
Sbjct: 51 MAEKWEA--LPKDISWHMIGHVQRNKVKYMAEFVDLIHGVDSYKLLKEINKQAKKYNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ + +Q + + GLM + +
Sbjct: 109 NCLLQIKIAEEDSKFGMSVEEATTLLASEEFQQLENVAIVGLMGMATFTDDTSQVQQEFK 168
Query: 179 EI---ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ K L +SMGM+ D+ELAI G+T VRIGS IFG R +
Sbjct: 169 NLKTTFDTLKAIHNYLKIISMGMSGDYELAIQEGSTMVRIGSSIFGARNYAS 220
>gi|313892936|ref|ZP_07826513.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. oral taxon
158 str. F0412]
gi|313442289|gb|EFR60704.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. oral taxon
158 str. F0412]
Length = 228
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + A S G EN++QEAK
Sbjct: 2 IEESLHAIQQRMADAMARVGR-VDTALLVAVTKNHPVSAVEEAASLGVTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + + IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 61 EKQLTYKGPQ-LTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVATKHDKVQDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--------- 173
+QVN E K+G+ + + + + V GLMC+ P NP+
Sbjct: 120 LLQVNVAREASKTGMSVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDNPEEARPIFRVANA 179
Query: 174 -FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + E ++ LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LYEDMKGYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGERVY 227
>gi|237741593|ref|ZP_04572074.1| proline synthetase associated protein [Fusobacterium sp. 4_1_13]
gi|294785799|ref|ZP_06751087.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp. 3_1_27]
gi|229429241|gb|EEO39453.1| proline synthetase associated protein [Fusobacterium sp. 4_1_13]
gi|294487513|gb|EFG34875.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp. 3_1_27]
Length = 223
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + +
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKGELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|152976261|ref|YP_001375778.1| alanine racemase domain-containing protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025013|gb|ABS22783.1| alanine racemase domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 224
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L V +++++ + A R V LVAV+K V +K + G EN+ +
Sbjct: 1 MTVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI+S D + ++ R A + + ++ +
Sbjct: 61 FLQKYEHFGSQVN--WHFIGSLQTRKVKEIISHIDYLHSLDRLSLAREIQ---KRATKPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + +FV ++ ++ V GLM + P + +
Sbjct: 116 KCFIQVKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAPFTEDEAEIRGCFKTL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQQQVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|189220120|ref|YP_001940760.1| enzyme with a TIM-barrel fold [Methylacidiphilum infernorum V4]
gi|189186978|gb|ACD84163.1| Predicted enzyme with a TIM-barrel fold [Methylacidiphilum
infernorum V4]
Length = 246
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 11/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L+ + KIE ++ + R ++LVAV+K + + L G V EN++QEA
Sbjct: 9 SIQERLEKLQYKIETASRKSGRNPKDITLVAVTKGFGPEVVETLLRMGIVHIGENRVQEA 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + ++ FIG LQ NK+ LFD I++V + A+LLS + L
Sbjct: 69 RLKKEQIGEK--GIWHFIGHLQKNKIKLTSHLFDWIDSVDDLEDATLLSHFAQNMGKTLK 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E K G P + + +L + GLM I PA +P +P F L
Sbjct: 127 ILVQVNVSGESTKFGTTPELAQSLCLAINALPRLEILGLMTIAPASPDPEKVRPVFSRLR 186
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM++DFE+AI GAT +RIG + G R
Sbjct: 187 MLRDKIESQSGIPLPVLSMGMSQDFEVAIEEGATMIRIGHFLLGPR 232
>gi|154494905|ref|ZP_02033910.1| hypothetical protein PARMER_03949 [Parabacteroides merdae ATCC
43184]
gi|154085455|gb|EDN84500.1| hypothetical protein PARMER_03949 [Parabacteroides merdae ATCC
43184]
Length = 222
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K + V+LVAVSK + ++ A + GQ +F E++ QE
Sbjct: 1 MNITENITRLKASL----------PAGVTLVAVSKFHPVEALQEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQSNKV +I I ++ K ++ + K R +
Sbjct: 51 LTA--KQKVLPSDIEWHFIGPLQSNKVKDIAPFIHTIHSIDSLKLLQEVNKQAAKHDRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G P++ ++ + +L + + GLM + + K F+
Sbjct: 109 RVLLEIHIAQEEAKHGFSPDECRELLYNLLPEALPYIRICGLMGMATNTDDTSLIKNEFH 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ E K +LSMGM+ D+ +AI G+T +RIG+ IFGER
Sbjct: 169 NIHELFTELKNSVFKGDEYFCELSMGMSHDYPIAIREGSTMIRIGTSIFGEREY 222
>gi|206970984|ref|ZP_03231935.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH1134]
gi|206733756|gb|EDZ50927.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH1134]
Length = 224
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+++AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYKIAIEEGATYIRLGTILVGK 223
>gi|312889194|ref|ZP_07748751.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
gi|311298356|gb|EFQ75468.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 229
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ ++I+ S LVAVSK ++ ++ A GQ IF EN +QE
Sbjct: 1 MSIADNIKNLNKEIKLSKA---------KLVAVSKTKPAEDLQEAYDAGQRIFGENMVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D+Q IG LQ+NKV I +IE+V K ++ + K R +
Sbjct: 52 LVEKYEK--LPKDIQWHLIGHLQTNKVKYIAPFISLIESVDSLKLLQEINKQAEKNKRVI 109
Query: 121 PVYIQVNTGYEIQKSG--IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+QV E K G + V GLM I N K
Sbjct: 110 DCLLQVYIADEETKFGLSYDELIELLRSDEYTALKNIRVVGLMGIATNTDNEKQINDEFH 169
Query: 179 EIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ +LSMGM+ D+++A+ G+T +R+GS IFG+R
Sbjct: 170 ELRVLFDGIKVSFFRKDEFFKELSMGMSSDYKIALEQGSTMIRVGSTIFGQR 221
>gi|304313337|ref|YP_003812935.1| hypothetical protein HDN1F_37300 [gamma proteobacterium HdN1]
gi|301799070|emb|CBL47313.1| conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 238
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 100/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG + +I ++A + P L+A SK + +IR G F E+ LQEA
Sbjct: 9 LGERYSALLAQIRSAAQRYQWPA--PLLLAASKTRSASEIRELFEAGCRDFGESYLQEAL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + FIG LQSNK I S FD + +V + A LS + L V
Sbjct: 67 PKMEALQDL-PITWHFIGPLQSNKTRGIASHFDWVHSVDSLRLAERLSEQRPPTLAPLNV 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+N E KSG+ P L + GLMC+P + +
Sbjct: 126 CLQINLDNEPTKSGVAPEFAPPLANAIAALPHLRLRGLMCVPAPRELFSEQRQSAAALRA 185
Query: 183 ------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L LS+GM+ D E AIA G+T VR+GS +FG RP +T
Sbjct: 186 LLSHIQAHCPRCHPALDTLSIGMSDDLEAAIAEGSTLVRVGSALFGPRPPKT 237
>gi|38234316|ref|NP_940083.1| hypothetical protein DIP1745 [Corynebacterium diphtheriae NCTC
13129]
gi|38200579|emb|CAE50274.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 221
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 104/220 (47%), Gaps = 11/220 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + Q+ +KI +A + R + L+AVSK ++ A+ G +F EN+ Q
Sbjct: 7 MSDFRTRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVFGENRPQ 66
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K + + IG LQ NK +IV + + A L +
Sbjct: 67 ELVEKAQAIP---NAYWCAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALD---QRLDHQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V++QVNT +E QK GI P++ + F+ Q L+V GLM + + SE
Sbjct: 121 LDVFVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRGLMTMARNDPCERVVRASFSE 180
Query: 180 IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM+ DFE AI GATSVR+GS +F
Sbjct: 181 LRELRDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALF 220
>gi|167762344|ref|ZP_02434471.1| hypothetical protein BACSTE_00698 [Bacteroides stercoris ATCC
43183]
gi|167699987|gb|EDS16566.1| hypothetical protein BACSTE_00698 [Bacteroides stercoris ATCC
43183]
Length = 222
Score = 156 bits (393), Expect = 3e-36, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ D V LVAVSK ++ I A S GQ +F E+K+QE
Sbjct: 1 MSIAENIKQVLSEL----------PDGVRLVAVSKFHPNEAIEEAYSAGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ IV +I V K + ++ + K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYIVPYVTLIHGVDSYKLLTEINRQAAKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G ++ ++ ++ + + GLM + N +
Sbjct: 109 NCLLQLHIAQEESKFGFSFDECREMLAGDEWKKLGNVRICGLMGMATNTDNIEQIKAEFR 168
Query: 179 EIARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLNNFFQEAKATWFSNAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERIY 222
>gi|149177443|ref|ZP_01856047.1| hypothetical protein PM8797T_19116 [Planctomyces maris DSM 8797]
gi|148843776|gb|EDL58135.1| hypothetical protein PM8797T_19116 [Planctomyces maris DSM 8797]
Length = 236
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 13/224 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I+ + I A+R +SV+L+ V+K + + G AE++ Q+
Sbjct: 8 LHKNLTGIQNRIQAACIRAQRAPESVTLIGVTKYARLEWASELIKLGCRDLAESRTQQLA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ D+ FIG LQ NKV + +I +V EK + + + +
Sbjct: 68 ER--AGLLPSDLHWHFIGPLQRNKVRRTIQYSWLIHSVDSEKLLKTIDRVAGESKQNPRI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G + + + GLM + P + +P+ + E++
Sbjct: 126 LIEVNLSGEANKKGFQKTELLRLWPSLCRTSHAQISGLMTMAPHVDDPELARPVFRELSE 185
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +L +LSMGM+ DFE+ I GAT VR+GS +F
Sbjct: 186 LRDSLQAISPEQIRLQELSMGMSGDFEVGIEEGATLVRVGSALF 229
>gi|218196101|gb|EEC78528.1| hypothetical protein OsI_18473 [Oryza sativa Indica Group]
gi|222630215|gb|EEE62347.1| hypothetical protein OsJ_17136 [Oryza sativa Japonica Group]
Length = 243
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
D++ FIG+LQSNK +++ ++ V + + + L V
Sbjct: 74 Q--LPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P+ + + L GLM I + P +
Sbjct: 132 LVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANC 191
Query: 178 -SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ +E + + LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RKEVCKELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREYP 240
>gi|226360225|ref|YP_002778003.1| hypothetical protein ROP_08110 [Rhodococcus opacus B4]
gi|226238710|dbj|BAH49058.1| hypothetical protein [Rhodococcus opacus B4]
Length = 257
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +++ + + A R VSL+ V+K R+ G F E++ QEA
Sbjct: 22 DIEAALGAVRARLDAACLQAGRDPAEVSLLPVTKFFPESDARILYDLGCREFGESREQEA 81
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TASLLSLE 112
K R + V+ IG LQ NK + I +V E+ A+ +LE
Sbjct: 82 TAKIAEFRTAVTDPSVRWHMIGHLQRNKAKAVAHWAYAIHSVDSERLVGALGRAAAAALE 141
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++ L V +QV+ + Q+ G + L GLM +PP +P
Sbjct: 142 AGERPAPLRVLLQVSLDGDPQRGGAAIADLDRLAAQVQSSPGLEYRGLMAVPPIDADPDA 201
Query: 173 HFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L +I T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 202 AFEELHKIHARLRRDHPDATELSAGMTNDLEHAVRHGSTCVRVGTALLGARP 253
>gi|149372304|ref|ZP_01891492.1| hypothetical protein SCB49_00842 [unidentified eubacterium SCB49]
gi|149354694|gb|EDM43257.1| hypothetical protein SCB49_00842 [unidentified eubacterium SCB49]
Length = 219
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIQKNIEKYRDLM----------PEGVTLVAVSKTKPVSDLMEAYEAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + K D+ IG +Q NKV + ++I V K ++ E K +R +
Sbjct: 51 MASKHEEMPK--DIAWHMIGHVQRNKVKYMAPFVNLIHAVDSLKLLKEINKEAAKNNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
+Q+ E K GI + + NV+ GLM + +
Sbjct: 109 NCLLQIKIAEEDSKFGISKADATALLASEIVQDLKNVKIIGLMGMATFTEDKVQIRSEFK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LT+LSMGM+ DF LAI G+T VRIGS IFGER
Sbjct: 169 SLKEYFNTIKKEHRNLTQLSMGMSGDFTLAIEEGSTMVRIGSSIFGERNYN 219
>gi|240256085|ref|NP_567760.4| pyridoxal phosphate binding [Arabidopsis thaliana]
gi|14030629|gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|21536981|gb|AAM61322.1| putative proline synthetase associated protein [Arabidopsis
thaliana]
gi|332659861|gb|AEE85261.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 244
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 16/234 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ + +A R + V ++ VSK IR G F EN +QE
Sbjct: 9 TVASALRSVILRARKAAEQVGRDPERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQS 117
K D++ F+G LQSNK +++ + V + +
Sbjct: 69 IDKAPQ--LPEDIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V +QVNT E+ KSGI P+ + + L GLM I P +
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 177 L-----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++ + + + LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 187 TLSNCRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYP 240
>gi|18310836|ref|NP_562770.1| hypothetical protein CPE1854 [Clostridium perfringens str. 13]
gi|18145518|dbj|BAB81560.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 219
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 106/231 (45%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFHQ--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHF 174
IQVN G E QK GI+ + + + +NV G+M I P
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ + K+ LSMGM+ D+E+A G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK 219
>gi|332829127|gb|EGK01791.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas gadei ATCC
BAA-286]
Length = 222
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K ++ ++V LVAVSK IRVA + GQ IF E+++QE
Sbjct: 1 MGISENIHSIKDRL----------PENVKLVAVSKFHPVDAIRVAYNAGQHIFGESRMQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ FIG LQ+NKV I+ I +V + S + + + +
Sbjct: 51 ISQKHP--LLPQDIEWHFIGHLQTNKVKSIIPYTHTIHSVDSWRLLSEIEKSAARIGKRI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
++++ E K G ++ + F R+ + G+M + +
Sbjct: 109 CCLLEIHIAQEDAKFGFSFDECRSFLSGNQWRECKFAYIGGVMGMASNIEEESQIRKEFK 168
Query: 179 EI---ARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K +++SMGM+ D+ +A+ G+T +R+GS IFGER
Sbjct: 169 SLKLFFDEIKNDYFAEDDCFSEISMGMSGDYTIAVEEGSTMIRVGSSIFGEREY 222
>gi|269798488|ref|YP_003312388.1| alanine racemase domain protein [Veillonella parvula DSM 2008]
gi|269095117|gb|ACZ25108.1| alanine racemase domain protein [Veillonella parvula DSM 2008]
Length = 228
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHAIQQRMADAMARVGR-VDTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + + IG LQ NKV + V +FD+I +V K ++ K + V
Sbjct: 61 EKQLTYKGPQ-LTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDVIEKVAAKHDKMQDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--------- 173
+QVN E K+G+ + + + + V GLMC+ P +P+
Sbjct: 120 LLQVNVAREASKTGMTVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPQEARPIFRVANA 179
Query: 174 -FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F + E ++ LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LFEDMKRYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGERVY 227
>gi|18391333|ref|NP_563897.1| alanine racemase family protein [Arabidopsis thaliana]
gi|16226282|gb|AAL16123.1|AF428291_1 At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|21436037|gb|AAM51596.1| At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|332190696|gb|AEE28817.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 257
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ Q++ +A A R D + +VAVSK IR GQ F EN +QE +
Sbjct: 27 LRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIE--K 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM----IKQSRFLPV 122
+ D++ FIG+LQSNKV ++S + TV + ++ + L V
Sbjct: 85 APQLPEDIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKV 144
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
++QVNT E K G+ P+ ++ L GLM I A P + L
Sbjct: 145 FVQVNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKC 204
Query: 178 -SEIARECKLT----KLSMGMTRDFELA--IASGATSVRIGSGIFGERPCQ 221
SE+ +E + +LSMGM+ DFELA I G+T+VRIGS IFG R
Sbjct: 205 RSEVCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAREYP 255
>gi|85712848|ref|ZP_01043890.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
gi|85693312|gb|EAQ31268.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
Length = 231
Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +Q I A ++SV L+AVSK ++ IRVA GQ FAEN +QE
Sbjct: 8 NIVKSLGQIRQNINAMAEQTT-YRESVRLLAVSKKHSAEAIRVAYEAGQREFAENYVQEG 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ FIG LQSNK + FD ++++ REK A L+ + L
Sbjct: 67 VAKVQQLQAL-DITWHFIGPLQSNKTKLVAEHFDWVQSIDREKIARRLNDQRSGALPPLN 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V +QVN + KSG+ + + L + G+M I A + K F +
Sbjct: 126 VLLQVNIDNDPNKSGVKKSDINALAKFVSKCPHLKLRGIMTILEADTDEKQQLDSFTSMR 185
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ + + LSMGM+ D AI +GA VRIGS IFG+R
Sbjct: 186 ELYQQLQQLHPSVDTLSMGMSGDMRQAIHAGANMVRIGSAIFGQR 230
>gi|258646837|ref|ZP_05734306.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
15470]
gi|260404274|gb|EEW97821.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
15470]
Length = 236
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 14/231 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + KL+V K++I + + + V+LVAV+K + + L G EN++Q
Sbjct: 1 MSAIEEKLEVVKKRIAAAKARS-PYRQDVTLVAVTKFHPLEDMEEVLRLGVKEVGENRVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K R + V G LQ NKV + V+ D+I++V + + + +
Sbjct: 60 ELEDKRS--RLKMPVVWNLQGHLQKNKVKKAVAAADLIQSVDSVEIMEEIDKRAGQAGKV 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----------N 169
V ++ N E K G+ P + + V+GLMC+ P +
Sbjct: 118 QDVLLEFNISGETSKYGLPPESLDEAAAKAGMLPHIRVKGLMCMAPMVEDVEMTRPVFRR 177
Query: 170 PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +L + +++ LSMGMTRDFE AI GAT VR+G+ IFGER
Sbjct: 178 AHEMWEVLKTYFPKGQVSVLSMGMTRDFETAIEEGATMVRVGTAIFGERNY 228
>gi|88811611|ref|ZP_01126865.1| putative alanine racemase [Nitrococcus mobilis Nb-231]
gi|88791002|gb|EAR22115.1| putative alanine racemase [Nitrococcus mobilis Nb-231]
Length = 252
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 97/230 (42%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++I + A R + V L+ V+K V ++++R A G F ENK+QEA
Sbjct: 9 IRQHCDEVRRRIAQACARAGRAPEEVRLLPVTKTVAAERLRAAFVAGLTEFGENKIQEA- 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ V IG LQ+NK + V + + + A L + R L V
Sbjct: 68 DAKAEHLADLPVTWSIIGHLQTNKAKQAVRFAREFQALDSLRLAEALERRLQGAGRGLDV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVNT E K G+ P DF+ L V GLM + + +
Sbjct: 128 LVQVNTSAEASKFGLAPEAVADFLRALPAFSALRVRGLMTLAVFDPDTVRVRACFRRLRV 187
Query: 183 E-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE A+ GAT VR+G IFG RP
Sbjct: 188 LRDRLRDAAPPAIALDELSMGMSGDFEAAVEEGATVVRVGQAIFGARPLP 237
>gi|282849926|ref|ZP_06259309.1| pyridoxal phosphate enzyme, YggS family [Veillonella parvula ATCC
17745]
gi|294792852|ref|ZP_06757999.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 6_1_27]
gi|294794608|ref|ZP_06759744.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 3_1_44]
gi|282580363|gb|EFB85763.1| pyridoxal phosphate enzyme, YggS family [Veillonella parvula ATCC
17745]
gi|294454938|gb|EFG23311.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 3_1_44]
gi|294456751|gb|EFG25114.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 6_1_27]
Length = 228
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHAIQQRMADAMARVGR-VDTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + + IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 61 EKQLTYKGPQ-LTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVAAKHDKIQDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--------- 173
+QVN E K+G+ + + + + V GLMC+ P +P+
Sbjct: 120 LLQVNVAREASKTGMTVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPQEARPIFRVANA 179
Query: 174 -FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F + E ++ LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LFEDMKRYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGERVY 227
>gi|49474718|ref|YP_032760.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
gi|49240222|emb|CAF26691.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
Length = 229
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 142/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ ++ I + RP + V L+AVSK V + I L GQ +FAEN++QEA +K
Sbjct: 13 EAWKNLQKDIIETCQNMNRPLEEVQLIAVSKTVSADHIFPLLQAGQSVFAENRVQEAAEK 72
Query: 65 WIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+++ +L IG LQSNK +E V +FDVI+TV REK A LS+EM KQ R LP Y
Sbjct: 73 WPRLRQQFKFIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKSLSIEMQKQKRILPCY 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E+QKSGI P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 133 VQVNIGLELQKSGIPPQEVIPFVAQCKNHYGLDIIGLMAIPPVKENPGPYFALLAKLAKK 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ DF++A+ G+ ++RIGS +FG+R
Sbjct: 193 AGLPKLSMGMSNDFKIALQFGSNTLRIGSALFGKR 227
>gi|325279347|ref|YP_004251889.1| hypothetical protein Odosp_0626 [Odoribacter splanchnicus DSM
20712]
gi|324311156|gb|ADY31709.1| protein of unknown function UPF0001 [Odoribacter splanchnicus DSM
20712]
Length = 227
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 94/235 (40%), Gaps = 26/235 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ ++ + + + V L+AVSK + I A + GQ F EN+ QE
Sbjct: 3 LNIKENIEEIVKTL----------PEGVRLIAVSKTKPVEYIEEAYAGGQRAFGENRPQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ IG LQ V I S +I +V K + E +K R +
Sbjct: 53 MAAKYRQ--LPKDIEWHMIGQLQEKNVKYIASFVKLIHSVDSLKLLQKIDREALKNERMI 110
Query: 121 PVYIQVNTGYEIQKSG--IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
++ + E KSG + + + G+M I + +
Sbjct: 111 DCLLEFHIAEEETKSGLNWEEACRLLESDEFKVLEHIRIVGVMGIATYTEDREQIRKEFR 170
Query: 179 EIARECKL------------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ R L +LSMGM+ D+ +A+ G+T VR+GS +FG R
Sbjct: 171 ELHRIFGLLKATYFQEEESFKELSMGMSGDYPIAVEEGSTMVRVGSAVFGARDYN 225
>gi|254304213|ref|ZP_04971571.1| possible TIM-barrel fold protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324405|gb|EDK89655.1| possible TIM-barrel fold protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 223
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ+I ENK+Q
Sbjct: 1 MSIKANVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEKFLETGQIICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A + + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEIDKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|256830503|ref|YP_003159231.1| alanine racemase domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579679|gb|ACU90815.1| alanine racemase domain protein [Desulfomicrobium baculatum DSM
4028]
Length = 231
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 82/226 (36%), Positives = 109/226 (48%), Gaps = 11/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++ +A A R DS L+AVSK+ + IR GQ +F EN +QEA
Sbjct: 5 SITDRWLKVLEQMAAAARRAGRAPDSARLLAVSKLHPAHDIRALFEAGQPMFGENYVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ IG LQ+NKV +V F +I V K A L +
Sbjct: 65 LGKMA--VLPREISWHLIGHLQTNKVKSVVGRFALIHGVDSLKLARSLHCQAEAMDLTQD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN E QKSGI L GLM +PP +P +P+F L
Sbjct: 123 VLVQVNLAAEKQKSGIFEADLPPLAEFLAGSSFLRWRGLMLMPPFFDDPDRARPYFARLR 182
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + L +LSMGMT DFE AI GAT VRIG+ IFGER
Sbjct: 183 ELADTLRTGFGLALPELSMGMTGDFEAAIEEGATLVRIGTRIFGER 228
>gi|307152198|ref|YP_003887582.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982426|gb|ADN14307.1| alanine racemase domain protein [Cyanothece sp. PCC 7822]
Length = 218
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + I V L+AV+K V ++ +R A G FAEN+LQE
Sbjct: 1 MTIAQRIDQIRSFI----------PSHVRLIAVTKQVPTEAMREAYQAGIRDFAENRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQSNK +++ F+ I +V + L + S
Sbjct: 51 ALVKQEQLQDLPDLCWHFIGHLQSNKAKKVLESFEWIHSVDSLELLQRLDRLAKELSNVP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QV + K G + + + QL ++GLM I P N
Sbjct: 111 RICLQVKVLPDPNKYGWPIPEFLQDIPQIEKCCQLKIQGLMTILPLGLNEAEIKAAFETT 170
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ +LSMGM+ D++ A+ GAT +R+G +FGER
Sbjct: 171 RKLALQVNGQSQLEIRELSMGMSDDYQWAVGEGATMIRLGRILFGER 217
>gi|300773394|ref|ZP_07083263.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759565|gb|EFK56392.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
Length = 229
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ Q+I++ V+LVAVSK ++ I A GQ +F EN +QE
Sbjct: 1 MSIAANIEEINQEIKSL---------GVTLVAVSKTKPNEDILQAYEAGQRVFGENMVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D++ IG LQ+NKV I +IE+V K ++ +K R +
Sbjct: 52 LVEKQEQ--LPKDIEWHLIGHLQTNKVKYIAPFIHMIESVDSIKLLKEINKHALKHDRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+QV E K G+ + + + + GLM I N K
Sbjct: 110 DCLLQVYIADEDTKFGLDHTELIELLRDDEFSSLKNIRIRGLMGIATNTENEKVIKEEFY 169
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ +E LSMGM+ D+ LAI G+T +R+GS +FG+R
Sbjct: 170 ELKMLFDGVKSSFFRKEDTFDTLSMGMSSDYRLAIEQGSTMIRLGSTVFGKR 221
>gi|88802794|ref|ZP_01118321.1| hypothetical protein PI23P_09390 [Polaribacter irgensii 23-P]
gi|88781652|gb|EAR12830.1| hypothetical protein PI23P_09390 [Polaribacter irgensii 23-P]
Length = 224
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 26/236 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K+ I ++V LVAVSK ++ A GQ +F ENK+QE
Sbjct: 1 MEIKKNIAEIKKSI----------PENVILVAVSKTKPIADLQEAYDGGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D+Q IG LQSNKV + ++I + + KT ++ + K R +
Sbjct: 51 MAEKFDA--LPKDIQWHMIGHLQSNKVKYMAHFVNLIHGIDKLKTLQEINKQAKKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS 178
+Q E K G+ + + + + N++ G M + N + +
Sbjct: 109 SCLLQAKIAKEESKFGLSFEEIEHILKSPDFQELENIKIVGFMGMASFSDNQEQLNEEFA 168
Query: 179 EIAR------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ C+L LSMGM+ D+ LAI +G+T +R+GS IFG R +
Sbjct: 169 SLKNFFELHKKNTSTNNCQLEILSMGMSGDYPLAIKNGSTMIRLGSSIFGSRNYSS 224
>gi|107021807|ref|YP_620134.1| hypothetical protein Bcen_0247 [Burkholderia cenocepacia AU 1054]
gi|116688754|ref|YP_834377.1| hypothetical protein Bcen2424_0731 [Burkholderia cenocepacia
HI2424]
gi|105891996|gb|ABF75161.1| Protein of unknown function UPF0001 [Burkholderia cenocepacia AU
1054]
gi|116646843|gb|ABK07484.1| Protein of unknown function UPF0001 [Burkholderia cenocepacia
HI2424]
Length = 239
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 8 MSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 67
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 68 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 127
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 128 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHR 187
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 188 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDY 237
>gi|172059708|ref|YP_001807360.1| alanine racemase domain-containing protein [Burkholderia ambifaria
MC40-6]
gi|171992225|gb|ACB63144.1| alanine racemase domain protein [Burkholderia ambifaria MC40-6]
Length = 232
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K ++ FIG LQSNK + FD + ++ R K A L+ +
Sbjct: 61 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSIDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 181 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 231
>gi|56964112|ref|YP_175843.1| hypothetical protein ABC2347 [Bacillus clausii KSM-K16]
gi|56910355|dbj|BAD64882.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 229
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + K ++ + + R D V ++AV+K V + A+ G EN+++ A
Sbjct: 4 NVAENVANIKMRVRQACERSGRAIDDVRIIAVTKYVSVATAKQAVEAGIADIGENRIEGA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + +L F+GSLQS KV IV++ I ++ R A + + + +
Sbjct: 64 LEKAAAIGQA---RLHFVGSLQSRKVKNIVNVVSCIHSLDRLSLAKEIDKRLEP-GKTID 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
++QVN E K+G+ P++ + F+ + V GLM + P +P F L
Sbjct: 120 CFVQVNVSGEQSKNGLSPDEVRPFINELAAYPAVRVIGLMTMAPFEQDAERTRPIFSKLR 179
Query: 179 EIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + K +LSMGM+ DFE+AI GAT +R+G+ + G+
Sbjct: 180 ELRDQIKADKLSSAPCTELSMGMSNDFEVAIEEGATFIRLGTSLVGK 226
>gi|326526139|dbj|BAJ93246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A R +SV +VAVSK IR G F EN +QE
Sbjct: 14 LRSVLSRAQQAAARTGRSPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELID--K 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
+ D++ FIG+LQSNK +++ ++ V + + + L V
Sbjct: 72 APQLPEDIEWHFIGNLQSNKAKALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P+ + L GLM I + P +
Sbjct: 132 LVQVNTSGEESKFGVDPSGCVGLAKHVKLSCPNLVFSGLMTIGMLDYSSTPENFKALTSC 191
Query: 178 -SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ E + + LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREYP 240
>gi|326511339|dbj|BAJ87683.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532008|dbj|BAK01380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 243
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A R +SV +VAVSK IR G F EN +QE
Sbjct: 14 LRSVLSRAQQAAARTGRSPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELID--K 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
+ D++ FIG+LQSNK +++ ++ V + + + L V
Sbjct: 72 APQLPEDIEWHFIGNLQSNKAKALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P+ + L GLM I + P +
Sbjct: 132 LVQVNTSGEESKFGVDPSGCVGLAKHVKLSCPNLVFSGLMTIGMLDYSSTPENFKALTSC 191
Query: 178 -SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ E + + LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREYP 240
>gi|313157824|gb|EFR57235.1| pyridoxal phosphate enzyme, YggS family [Alistipes sp. HGB5]
Length = 221
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 23/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L + + + V+LVAVSK + IR A G +F E++ QE
Sbjct: 1 MSIACQLSFVRSTL----------PEDVTLVAVSKTHPVEAIREAYDAGHRVFGESRPQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K+ D++ IG LQ+NK+ I +I +V + A + E K R +
Sbjct: 51 LREKYEA--LPQDIEWHMIGHLQTNKIKYIAPFVSLIHSVDSARLAEAIQREAAKCGRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ ++++ E KSG + +V + V G+M I + + +
Sbjct: 109 EILLEIHVADEETKSGWEIGELMRYVGTAPFARMPDVCVRGVMGIATNTDDGEVIRRDFT 168
Query: 179 EIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ R L LSMGM+ D+ A+ G+ VR+GS IFGER
Sbjct: 169 ELKRCFDLLQPYFGARFNVLSMGMSHDYPFAVECGSNMVRVGSLIFGERDY 219
>gi|254443117|ref|ZP_05056593.1| conserved hypothetical protein TIGR00044 [Verrucomicrobiae
bacterium DG1235]
gi|198257425|gb|EDY81733.1| conserved hypothetical protein TIGR00044 [Verrucomicrobiae
bacterium DG1235]
Length = 232
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 100/228 (43%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ +KI S A R D+V L+ V+K R A G + EN++QEA
Sbjct: 7 DFQANLKEVVEKIHASCEKAGRAVDTVKLLPVTKNHPVDAARYAWDAGLLSVGENRVQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + + IG LQSNK ++ F ++TV R K A+ L + R LP
Sbjct: 67 LGKMDDVDSRLCWE--LIGPLQSNKAKKVAERFGRVQTVDRVKIATALDRYAAEAGRRLP 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +Q+N G + KSG + + L V+GLM I P + + +
Sbjct: 125 VLLQINAGRDPAKSGAELEDAAALLEALLKCESLQVDGLMTIAPLSEDADVARRCFARLR 184
Query: 182 R---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D E AI G+T VR+G+ +FG R
Sbjct: 185 ECRDGLSKSFGIDLLELSMGMSGDMEEAILEGSTMVRVGTALFGSRGY 232
>gi|19703896|ref|NP_603458.1| proline synthetase associated protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19714060|gb|AAL94757.1| Proline synthetase associated protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 223
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEKFLETGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|225713478|gb|ACO12585.1| Proline synthetase co-transcribed bacterial homolog protein
[Lepeophtheirus salmonis]
Length = 228
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 100/232 (43%), Gaps = 24/232 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K K+ ++V+LVAVSK I+ A GQ +F ENK+QE
Sbjct: 9 IKENLLQIKNKL----------PENVTLVAVSKTKPIADIQEAYDAGQRVFGENKIQEMV 58
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ IG LQ NKV + D+I V KT + + K +R +
Sbjct: 59 TKFDA--LPKDIEWHMIGHLQRNKVKYMAHFVDLIHGVDSFKTLKEIDKQAKKHNRVIKC 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q E K G+ ++ + + +N+ GLM + N + +
Sbjct: 117 LLQARIAKEETKFGLSFSEIGEIISSEEISELKNINIVGLMGMATFTDNQEQLQEEFVSL 176
Query: 181 AR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
R C L LS GM+ D+ LAI +G+T VRIGS IFG R T
Sbjct: 177 KRFFDAQITEKDNCNLQTLSTGMSGDYSLAIENGSTMVRIGSAIFGVRNYIT 228
>gi|171319776|ref|ZP_02908862.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
gi|171094978|gb|EDT40004.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
Length = 232
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K ++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 181 ALRALFDTLRADGLTLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 231
>gi|328953088|ref|YP_004370422.1| protein of unknown function UPF0001 [Desulfobacca acetoxidans DSM
11109]
gi|328453412|gb|AEB09241.1| protein of unknown function UPF0001 [Desulfobacca acetoxidans DSM
11109]
Length = 243
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 13/224 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
I +A R + LV SK VD +IR A++ G I EN LQEA++K
Sbjct: 21 YHTIMASIAAAARRVGREPAEIRLVGASKTVDLARIREAVAAGLAILGENYLQEARQKIA 80
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ V FIG LQSNK + V LFD+I +V R A L+ ++ V ++V
Sbjct: 81 --VLDAPVSWHFIGHLQSNKANAAVRLFDLIHSVDRLSLAQALNRAAANINKVQDVLLEV 138
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
N E KSGI + D + +C L V GLM +PP +P +P+F L + +
Sbjct: 139 NLAGEASKSGISSTELPDLIRVCHGLSHLRVRGLMAMPPWFADPEQARPYFKKLRILRDQ 198
Query: 184 --------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L +LSMGM+ D+E+AI GAT VRIG+ +FG RP
Sbjct: 199 VQSQGQPGLELVELSMGMSGDYEVAIEEGATLVRIGTALFGSRP 242
>gi|170702350|ref|ZP_02893243.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
gi|170132735|gb|EDT01170.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
Length = 232
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K ++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 181 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 231
>gi|300865596|ref|ZP_07110373.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300336411|emb|CBN55523.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 232
Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +Q++ SV L+AVSK V +R A + G F E+++QEA
Sbjct: 3 NIADRIANIRQQL----------PPSVRLIAVSKQVSVDAMRSAYAAGVRDFGESRIQEA 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ D+ IG LQ+NK ++ V F I +V K A L + +
Sbjct: 53 ADKQAQMQDLPDITWHLIGHLQANKAAKAVQQFQWIHSVDSLKLAQRLDRLAEELAYQPQ 112
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QV + K G + + Q L ++GLM IPP + L
Sbjct: 113 ACLQVKILPDRDKYGWSIPELLADLPEINQCRSLRIKGLMTIPPLGLDEAQTISLFNTAR 172
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + + + +LSMGM+ D+ LAI +GAT VR+G +FGER
Sbjct: 173 ELAEKIRQQNWSHIEMQQLSMGMSGDYHLAIQAGATMVRVGRTLFGER 220
>gi|260892901|ref|YP_003238998.1| alanine racemase domain protein [Ammonifex degensii KC4]
gi|260865042|gb|ACX52148.1| alanine racemase domain protein [Ammonifex degensii KC4]
Length = 247
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 11/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ I +A+ A R V LVAV+K V + I L+ G V EN++QE
Sbjct: 5 IRENLRQVREAITRAALRAGRDPTEVQLVAVTKGVPVEVIEQVLAEGVVDLGENRVQELV 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + FIG LQ NKV +V ++ ++ R A L ++ P
Sbjct: 65 AKYK--LLGDKAKWHFIGYLQRNKVKYLVRRIALLHSLDRWSLAQELDRWGQREGFVFPA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSE 179
+QVN E QK G++ + +DF++ R + V G M + P +P F L+E
Sbjct: 123 LVQVNVAREPQKHGLLEEEVEDFLLAVRSLKGVKVLGFMTVAPWVAEAEEVRPVFRRLAE 182
Query: 180 IARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
IA+ ++ LSMGMT+DFE+A+ GA VR+G IF
Sbjct: 183 IAQRYTCLPGVEIRYLSMGMTQDFEVAVEEGANIVRVGRAIF 224
>gi|163788570|ref|ZP_02183015.1| hypothetical protein FBALC1_10052 [Flavobacteriales bacterium
ALC-1]
gi|159875807|gb|EDP69866.1| hypothetical protein FBALC1_10052 [Flavobacteriales bacterium
ALC-1]
Length = 219
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ K + + V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MNIKTNLESIKSSL----------SEHVTLVAVSKTKPISDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + K D++ IG +Q NKV + +I V K ++ + K +R +
Sbjct: 51 MVDKYGQMPK--DIEWHMIGHVQRNKVKYMAEFVSLIHGVDSFKLLKEINKQAKKHNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTK-----DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+Q+ E K G+ D + + V G+ MG + F
Sbjct: 109 NCLLQIKIAEEDSKFGMSAEDASTLLQSDEFSELQHTNVVGVMGMATFTNNMGQIEKEFK 168
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ K L +SMGM+ D++LAI G+T +R+GS IFG R
Sbjct: 169 FLKSTFQKLKTLNSKLATISMGMSGDYQLAIECGSTMIRVGSSIFGSRNYS 219
>gi|260494764|ref|ZP_05814894.1| proline synthetase associated protein [Fusobacterium sp. 3_1_33]
gi|260197926|gb|EEW95443.1| proline synthetase associated protein [Fusobacterium sp. 3_1_33]
Length = 223
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQDICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIRDELNKEYFNNSLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|226313410|ref|YP_002773304.1| hypothetical protein BBR47_38230 [Brevibacillus brevis NBRC 100599]
gi|226096358|dbj|BAH44800.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 232
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 13/223 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + +I+ + A R ++ V ++AV+K VD+ I L+ G EN++Q+A
Sbjct: 8 LKERLQSIEARIQAACDRANRKREEVKIIAVTKYVDADAIGDLLAVGVENIGENRVQDAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K FIG LQ+NK E+V F I ++ R A L+ +
Sbjct: 68 PKHE--LHGNKGIWHFIGHLQTNKAKEVVGKFPYIHSLDRLSLAQELNRRGEALDHVVKC 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++Q+N E K G+ PN F+ +++ GLM + P + N + + +
Sbjct: 126 FLQINISGEETKFGLSPNDVLAFLRETSNMKHISIVGLMTMAPVVENQEEARQVFRGLYE 185
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +LSMGM+ DFE+AI GAT +R+GS +
Sbjct: 186 WKQRINEMAFPHAQVEELSMGMSSDFEVAIEEGATYIRLGSVL 228
>gi|311029941|ref|ZP_07708031.1| hypothetical protein Bm3-1_05186 [Bacillus sp. m3-13]
Length = 228
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 16/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +Q I N+ R + V ++AV+K V +++ + A++ G EN+
Sbjct: 5 SVESNLSEIQQNIRNACHNVNRSVEEVKIIAVTKYVSTERAQEAINTGVKHLGENRDDGF 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KKW + + +IG+LQS KV I+ D I ++ R+ A + + + +
Sbjct: 65 LKKWDAISN--EATWHYIGTLQSKKVKNIIGKVDYIHSLDRKSLAEEI---HKRAEKAVK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+IQVN E K G+ P + FV + + + GLM + P + F L
Sbjct: 120 CFIQVNVSGEDSKHGLAPEEVPGFVKTISDLHNIQIVGLMTMAPFTEEEELLRNCFRGLK 179
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +E + T+LSMGM+ D+++AI GAT +RIGS + G
Sbjct: 180 SLQQEIQSMNLPFAPCTELSMGMSNDYKIAIEEGATFIRIGSALVGN 226
>gi|237744987|ref|ZP_04575468.1| proline synthetase associated protein [Fusobacterium sp. 7_1]
gi|229432216|gb|EEO42428.1| proline synthetase associated protein [Fusobacterium sp. 7_1]
Length = 223
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ Q I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILQDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLGTGQDICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIRDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|319941855|ref|ZP_08016176.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
3_1_45B]
gi|319804508|gb|EFW01378.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
3_1_45B]
Length = 238
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 11/230 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L KQ + + A RP+ V L+AV K + + + G + F EN QE
Sbjct: 8 LEKRLAHVKQMLSEAEEKAGRPQGCVKLLAVGKTFNQEALLECARAGALAFGENYAQEGC 67
Query: 63 ---KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ E ++ FIG LQ+NK + FD ++TV R + A LS +
Sbjct: 68 TKIDWFRTNHPELHLEWHFIGPLQANKSRMVAERFDWVQTVDRLRIAERLSAQRPDNLPP 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V I+VN E KSGI P + + +L + GLM IP + L
Sbjct: 128 LNVLIEVNVDAEASKSGISPEELPALAAAVSELPRLRLRGLMSIPAPAETYEGKMKPLLA 187
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A + + LSMGM+ D A+ +G+T VRIGS IFG R
Sbjct: 188 MASLFKAFQEKYPQADTLSMGMSADLTEAVEAGSTMVRIGSAIFGPRSYS 237
>gi|47570315|ref|ZP_00240962.1| conserved hypothetical protein protein TIGR00044 [Bacillus cereus
G9241]
gi|47553024|gb|EAL11428.1| conserved hypothetical protein protein TIGR00044 [Bacillus cereus
G9241]
Length = 224
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQKNLTTVNESIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQAEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|256379757|ref|YP_003103417.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
gi|255924060|gb|ACU39571.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
Length = 231
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 10/227 (4%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS L L + +I + A R V+L+AV+K + +R+ G FAEN
Sbjct: 1 MSREEELRLNLAEVRARIAKACETADRDPAEVTLLAVTKTFPASDVRLLHGLGLRDFAEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K QEA+ K + D R +G LQ NK +++ D I++V + L K
Sbjct: 61 KDQEARAKVAE-LGDLDANWRMVGRLQRNKARSVLTWADRIDSVDSARLVDALVEAAAKN 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQV+ + + G D + +L + G+M + P P F L
Sbjct: 120 GVHLDVLIQVSIDGDAARGGCPVPDLPDLAARIGRSSELRLRGVMAVAPLGRYPGEAFAL 179
Query: 177 LS----EIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + + T +S GM+ D E AIA G+T VR+G+ + G R
Sbjct: 180 LKGAVTRLRDDHPDATVISAGMSGDLEDAIAWGSTCVRVGTALLGSR 226
>gi|115350675|ref|YP_772514.1| hypothetical protein Bamb_0621 [Burkholderia ambifaria AMMD]
gi|115280663|gb|ABI86180.1| Protein of unknown function UPF0001 [Burkholderia ambifaria AMMD]
Length = 268
Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 37 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 96
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K ++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 97 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLP 156
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 157 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 216
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 217 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 267
>gi|194290665|ref|YP_002006572.1| hypothetical protein RALTA_A2580 [Cupriavidus taiwanensis LMG
19424]
gi|193224500|emb|CAQ70511.1| Conserved hypothetical protein, UPF0001 family; putative racemase
[Cupriavidus taiwanensis LMG 19424]
Length = 229
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q I +A A R V+L+AVSK V +IR A + GQ+ F EN +Q
Sbjct: 1 MSVIAANLQAVRQGIAAAAQQAGRQPADVALLAVSKTVSPDRIRAAYAAGQLAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L Q FIG LQSNK + FD + ++ R + A LS +
Sbjct: 61 EGLDKIAALADLRGRLQWHFIGPLQSNKTRPVAEHFDWVHSIERLRIAERLSAQRPAGMT 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSG+ P + L + GLM IP +P +
Sbjct: 121 PLQVCIQVNISGEASKSGVAPAEVPALAHAVAALPGLRLRGLMAIPEPADDPAAQRRPFA 180
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 181 AMRAMLQALRADGLDLDTLSMGMSGDMEAAIAEGATLVRIGTAIFGAR 228
>gi|255010408|ref|ZP_05282534.1| hypothetical protein Bfra3_14824 [Bacteroides fragilis 3_1_12]
gi|313148210|ref|ZP_07810403.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136977|gb|EFR54337.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 222
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNVTDNLKQVLAEL----------PSGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ + +I + K + ++ + IK R +
Sbjct: 51 MTGKYES--LPKDIEWHFIGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAGRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G ++ K+ + K + + GLM + + +
Sbjct: 109 RCLLQIHIAQEETKFGFSFDECKEMLNADEWKALANIQICGLMGMATNTDSKEQIEREFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A E +LSMGM+ D+ LAIA G+T VR+GS IFGER
Sbjct: 169 SLNCFFHEVKKQYFADEPTFCELSMGMSHDYHLAIAEGSTLVRVGSKIFGERVY 222
>gi|170732052|ref|YP_001763999.1| alanine racemase domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169815294|gb|ACA89877.1| alanine racemase domain protein [Burkholderia cenocepacia MC0-3]
Length = 232
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQHAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 181 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDY 230
>gi|282855832|ref|ZP_06265134.1| pyridoxal phosphate enzyme, YggS family [Pyramidobacter piscolens
W5455]
gi|282586346|gb|EFB91612.1| pyridoxal phosphate enzyme, YggS family [Pyramidobacter piscolens
W5455]
Length = 231
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQEA 61
+ ++ ++E +A + R V+L+AVSK + + A G F EN++QE
Sbjct: 6 IFASIRSILDRMEAAARRSGRKAAEVTLLAVSKTKPLETVVAAARTGLVTHFGENRVQEG 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K E IG LQ NK + V LFDVIE++ E A+ + ++ + L
Sbjct: 66 QAKIPGFPAELGAVWHLIGHLQRNKARKAVELFDVIESIDGEGIAAAVERVCAEKDKRLD 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
V I+VN+ E K+G + R Q L ++GLM I P G+ +
Sbjct: 126 VLIEVNSSGEASKTGTPAAEVPALADFVRGQCPHLKLQGLMTIGPLGGDERAVRGAFDAT 185
Query: 178 SEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ +L LSMGM+ DFE AI G+T VR+G+ IFG R
Sbjct: 186 RELRDRLRLSADDLPCLSMGMSGDFEWAIEQGSTEVRVGTAIFGHR 231
>gi|120435023|ref|YP_860709.1| alanine racemase [fragment] [Gramella forsetii KT0803]
gi|117577173|emb|CAL65642.1| alanine racemase [fragment] [Gramella forsetii KT0803]
Length = 219
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + ++ +SV LVA+SK ++ + A + GQ IF ENK+QE
Sbjct: 1 MSISKNIEKYINEL----------PESVKLVAISKTKPNEDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW D+Q +G Q NKV + ++I V K ++ + R +
Sbjct: 51 MTDKWEE--LPKDIQWHMVGHTQRNKVKYMAPYVNLIHAVDSLKLLKEINKRARQNERTI 108
Query: 121 PVYIQVNTGYEIQKSGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ + +N+ GLM + + + +
Sbjct: 109 DCLLQIKIAEEDSKFGLDSEEANEILKSEAYSKMEHVNIIGLMGMATFTDDEEQVKSEFN 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + +L +LSMGM+ D+++A+A G T VRIGS IFG R
Sbjct: 169 YLKSVFDKFKEQYPELKELSMGMSGDYQVAVACGTTMVRIGSSIFGARNYN 219
>gi|332300649|ref|YP_004442570.1| protein of unknown function UPF0001 [Porphyromonas asaccharolytica
DSM 20707]
gi|332177712|gb|AEE13402.1| protein of unknown function UPF0001 [Porphyromonas asaccharolytica
DSM 20707]
Length = 221
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + +I + V LVAVSK + +R A GQ +F EN+ QE
Sbjct: 2 IAERLAEIRSQI----------PEQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + D+Q FIG+LQ NKV IV +IE+V E + + + R L +
Sbjct: 52 E--KAPQLPEDIQWHFIGTLQRNKVKYIVPYVSLIESVDSEALLQEIVKQANRFDRQLRI 109
Query: 123 YIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL-- 176
+Q E KSG+ + ++ + ++ + GLM + + + +
Sbjct: 110 LLQYKIAQEESKSGLDHTELLALVDHYLATPEWRERITICGLMGMATLTADKEQIRHEFD 169
Query: 177 --------LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E E +LSMGM+ D+ LA+ +G+T VRIG+ IFGER
Sbjct: 170 TLRALQTELRERYPEISWDELSMGMSSDWPLAVEAGSTIVRIGTAIFGERQY 221
>gi|228998681|ref|ZP_04158268.1| hypothetical protein bmyco0003_32420 [Bacillus mycoides Rock3-17]
gi|228761149|gb|EEM10108.1| hypothetical protein bmyco0003_32420 [Bacillus mycoides Rock3-17]
Length = 222
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + KQ
Sbjct: 61 QKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRTTKQV---RC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QV T E K GI +T F+ ++ ++ V GLM + P + ++
Sbjct: 116 FVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKLRG 175
Query: 182 -----RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|224535468|ref|ZP_03676007.1| hypothetical protein BACCELL_00331 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522934|gb|EEF92039.1| hypothetical protein BACCELL_00331 [Bacteroides cellulosilyticus
DSM 14838]
Length = 222
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ LQ ++ D V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNIAENLQQVLSEL----------PDGVRLVAVSKFHPNEAIEEAYRTGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ IV +I + K ++ + K + +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKFIVPYVALIHGIDSYKLLVEVNKQAAKAGKVV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
+Q++ E K G + ++ + + + GLM + + F
Sbjct: 109 NCLLQLHIAEEETKFGFSFGECREMLAAGEWKTLSNIQLCGLMGMATNTDDNEQIEKEFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS +E K +LSMGM+ D+ AIA+G+T +R+GS IFG+R
Sbjct: 169 SLSSFFKEVKDSWFADTEAFRELSMGMSHDYHQAIAAGSTLIRVGSKIFGDRTY 222
>gi|154251738|ref|YP_001412562.1| alanine racemase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154155688|gb|ABS62905.1| alanine racemase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 230
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 88/194 (45%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
+ +SL+AVSK ++ I L GQ F EN++QEA KW + ++L IG LQS
Sbjct: 36 EEISLIAVSKTFEADAIAPLLDAGQRCFGENRVQEAAGKWPHLRERYSGIELHLIGPLQS 95
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+++ + LFDV+ T+ R K A L R +++QVNTG E QK+G+ P
Sbjct: 96 NKLNDALDLFDVLHTLDRAKLAEALVKARDAGKRLPRLFLQVNTGEEPQKAGVPPGDVDR 155
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
F+ CR ++L +EGLMCIPP P HF LL +IAR L+KLSMGM+ DFE AI G
Sbjct: 156 FLERCRNDWKLEIEGLMCIPPVTEEPALHFALLEKIARRNGLSKLSMGMSADFETAIRLG 215
Query: 205 ATSVRIGSGIFGER 218
AT VR+GS +FG R
Sbjct: 216 ATHVRVGSALFGTR 229
>gi|254518699|ref|ZP_05130755.1| alanine racemase domain-containing protein [Clostridium sp.
7_2_43FAA]
gi|226912448|gb|EEH97649.1| alanine racemase domain-containing protein [Clostridium sp.
7_2_43FAA]
Length = 225
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 22/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + ++ + V+LVAVSK + I +A GQ F ENK+QE
Sbjct: 1 MDIEENIIKLRRSL----------PKDVTLVAVSKTKPIEDIEIAYKTGQRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
E D++ FIGSLQ+NKV +V +I ++S K + + E K++
Sbjct: 51 LID--KEKSLEKDIRWHFIGSLQTNKVKYLVGKVHLIHSLSSIKLLNKIESEFSKKNCTA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLS 178
+ IQ+N G E KSGI + D + V+GLM I P + +F +
Sbjct: 109 NLLIQINIGKEESKSGIFEEELNDLINEIEICNNCKVKGLMAIIPKGNENTNRYYFKKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I + + LSMGMT D+E+AI G+ +R+G GIFG+R
Sbjct: 169 NIYDDLSKKSYKNISMEILSMGMTNDYEIAIEEGSNLIRVGEGIFGKRN 217
>gi|228992635|ref|ZP_04152561.1| hypothetical protein bpmyx0001_33740 [Bacillus pseudomycoides DSM
12442]
gi|228766967|gb|EEM15604.1| hypothetical protein bpmyx0001_33740 [Bacillus pseudomycoides DSM
12442]
Length = 222
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + KQ
Sbjct: 61 QKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQRRTTKQV---RC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QV T E K GI +T F+ ++ ++ V GLM + P + ++
Sbjct: 116 FVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKLRG 175
Query: 182 -----RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|237726241|ref|ZP_04556722.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434767|gb|EEO44844.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 222
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PTEVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYE--TLPKDIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA---MGNPKPHFY 175
P +Q++ E K G ++ ++ + K NV G+M + K F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQSYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|225012866|ref|ZP_03703299.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
gi|225002988|gb|EEG40965.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
Length = 216
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 100/228 (43%), Gaps = 20/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + FK + +SVSL+AVSK + A GQ F ENK+QE
Sbjct: 1 MSISENIIEFKSTL----------SESVSLIAVSKTKPQSDLLEAYQAGQRAFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW D+ IG +Q+NKV + +I V K + + +K +R +
Sbjct: 51 MAEKWEK--LPKDIDWHMIGHVQTNKVKYMAPFVHLIHAVDSLKLLKEIQKQALKNNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQ+ E K G+ P + ++ + + GLM + N +
Sbjct: 109 GCLIQIRIAEEETKFGLPPEELPLLLLAAEDLPNVTIRGLMGMASFTANLNQVRKEFKHL 168
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A K T LSMGM+ D+E+AI GAT +R+GS IFGER
Sbjct: 169 ASLYKETIKVYPKNTILSMGMSGDYEIAIEEGATMIRVGSKIFGERNY 216
>gi|254246274|ref|ZP_04939595.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124871050|gb|EAY62766.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
Length = 239
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 8 MSDLAARLASVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQHAFGENYVQ 67
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 68 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 127
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 128 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHR 187
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 188 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDY 237
>gi|297844046|ref|XP_002889904.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297335746|gb|EFH66163.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ Q++ +A A R D + +VAVSK IR G F EN +QE +K
Sbjct: 12 LRSVVQRVNQAAEKAGRVSDQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIIEKSP 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI----ETVSREKTASLLSLEMIKQSRFLPV 122
D++ FIG+LQSNKV ++S + + L + + L V
Sbjct: 72 Q--LPDDIEWHFIGNLQSNKVKPLLSGVPNLVMVESVDDEKIANMLDRVVGNIGRKPLKV 129
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P+ ++ L GLM I A P + L
Sbjct: 130 LVQVNTSGEESKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKC 189
Query: 178 -SEIARECKLT----KLSMGMTRDFELA--IASGATSVRIGSGIFGERPCQ 221
SE+ +E + +LSMGM+ DFELA I G+T+VRIGS IFG R
Sbjct: 190 RSEVCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAREYP 240
>gi|256026886|ref|ZP_05440720.1| proline synthetase associated protein [Fusobacterium sp. D11]
gi|289764878|ref|ZP_06524256.1| proline synthetase associated protein [Fusobacterium sp. D11]
gi|289716433|gb|EFD80445.1| proline synthetase associated protein [Fusobacterium sp. D11]
Length = 223
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQDICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIKLQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIRDELNKEYFNNSLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|167904160|ref|ZP_02491365.1| hypothetical protein BpseN_18061 [Burkholderia pseudomallei NCTC
13177]
Length = 232
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 112/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P L + GLM IP +P +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + ++ + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFQQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|162148167|ref|YP_001602628.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786744|emb|CAP56327.1| putative alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
Length = 248
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 91/197 (46%), Positives = 123/197 (62%), Gaps = 1/197 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRFIGSLQ 83
D+V+LVAVSK + AL GQ++F EN++QEA K+ LR +W +L IG LQ
Sbjct: 40 PDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQ 99
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK + V + D+IE++ R A L+ + R + +QVNTG E QKSG+ Q
Sbjct: 100 TNKALDAVRIADMIESLDRPALADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQAD 159
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR+++ V GLMCIPPA +P PHF L+E+ R L LSMGM+ DFE AIA+
Sbjct: 160 AFITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAA 219
Query: 204 GATSVRIGSGIFGERPC 220
GAT VR+GS IFG+RP
Sbjct: 220 GATHVRVGSAIFGQRPA 236
>gi|294782618|ref|ZP_06747944.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp.
1_1_41FAA]
gi|294481259|gb|EFG29034.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp.
1_1_41FAA]
Length = 223
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V L+AV+K + I L GQ I ENK+Q
Sbjct: 1 MSIQASVEEILEDI----KKYSPYPEKVKLIAVTKYSSVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + + D++ FIG+LQ NKV I+ I +V++ A ++ + + +
Sbjct: 57 VKDKIEYFKNKNTDIKWHFIGNLQKNKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKT 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELKNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFDNNLTELSMGMSNDYKIALQEGSTYIRVGTKIF 222
>gi|149923027|ref|ZP_01911445.1| hypothetical protein PPSIR1_13475 [Plesiocystis pacifica SIR-1]
gi|149816148|gb|EDM75658.1| hypothetical protein PPSIR1_13475 [Plesiocystis pacifica SIR-1]
Length = 245
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 107/241 (44%), Gaps = 23/241 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKR----PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ +L + +++ + V L+ VSK K+ A + G F EN
Sbjct: 5 DVPARLADIRARLDAAVARRNPSIAADAPEVRLIGVSKRQPLAKLEAAHAAGLRDFGENY 64
Query: 58 LQEAKKKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
QE + K D + +IG+LQSNK+ +V +I TV R + + +
Sbjct: 65 AQELRDKQRDWAPAGDDAPRWHYIGALQSNKLKYLVGKTTLIHTVDRPELLTAIDRRAHA 124
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA--MGNPK 171
V I+V E QK+G+ P D + C + +V GLM IPPA + +
Sbjct: 125 AGVVQDVLIEVAIAGEAQKAGVAPAALPDLLAACERAEHGSVRCLGLMIIPPAGTPEDTR 184
Query: 172 PHFYLLSEIARECK-------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L E+ + + L +LSMGM+ DFE+AIA GAT VR+G+ IFG R
Sbjct: 185 CWFQALRELRDDLRGRFPGTGEAPRVLLRELSMGMSSDFEVAIAEGATLVRVGTAIFGPR 244
Query: 219 P 219
Sbjct: 245 N 245
>gi|260906351|ref|ZP_05914673.1| hypothetical protein BlinB_13566 [Brevibacterium linens BL2]
Length = 263
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 12/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++IE++A+ R V L+ VSK V ++IR A++ G ENK+QEA +K
Sbjct: 29 NLAEVNRRIESAAVRVGRDAAEVELLPVSKTVPQERIRQAVAAGCHKLGENKVQEAFRKS 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+ IG LQSNK ++ + + R K A+ L + R L VY+Q
Sbjct: 89 GEMADL-DIDWAVIGHLQSNKARDVAKFASEFQALDRLKVAAALDRRLQAAGRSLDVYVQ 147
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIAR 182
VNT E K G+ P + F+ Q L V+GLM + + F L +
Sbjct: 148 VNTSAEESKFGMPPEELPGFLRELPQFSALKVQGLMTLAIFSSDIARVRTCFQRLRTLRD 207
Query: 183 ECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + T LSMGM+ D+E+AI GA VR+G IFG+R
Sbjct: 208 QAQDTNPELIGRGSLSMGMSGDYEVAIEEGANCVRVGQAIFGKR 251
>gi|30021989|ref|NP_833620.1| putative cytoplasmic protein [Bacillus cereus ATCC 14579]
gi|218235156|ref|YP_002368700.1| conserved hypothetical protein TIGR00044 [Bacillus cereus B4264]
gi|218899054|ref|YP_002447465.1| hypothetical protein BCG9842_B1240 [Bacillus cereus G9842]
gi|296504394|ref|YP_003666094.1| hypothetical protein BMB171_C3564 [Bacillus thuringiensis BMB171]
gi|29897545|gb|AAP10821.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218163113|gb|ACK63105.1| conserved hypothetical protein TIGR00044 [Bacillus cereus B4264]
gi|218542197|gb|ACK94591.1| conserved hypothetical protein TIGR00044 [Bacillus cereus G9842]
gi|296325446|gb|ADH08374.1| putative cytoplasmic protein [Bacillus thuringiensis BMB171]
Length = 224
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|60682296|ref|YP_212440.1| putative racemase [Bacteroides fragilis NCTC 9343]
gi|60493730|emb|CAH08519.1| putative racemase [Bacteroides fragilis NCTC 9343]
Length = 222
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNVTDNLKQVLAEL----------PSGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ + +I + K + ++ + IK + +
Sbjct: 51 MTGKYES--LPKDIEWHFIGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAEKVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G ++ K+ + + + + GLM + + +
Sbjct: 109 RCLLQIHIAQEETKFGFSFDECKEMLNAAEWKALANIQICGLMGMATNTDSKEQIEREFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A E +LSMGM+ D+ LAI G+T VR+GS IFGER
Sbjct: 169 SLNCFFHEVKKQYFANEPTFCELSMGMSHDYHLAIKEGSTLVRVGSKIFGERVY 222
>gi|17227982|ref|NP_484530.1| hypothetical protein alr0486 [Nostoc sp. PCC 7120]
gi|17129831|dbj|BAB72444.1| alr0486 [Nostoc sp. PCC 7120]
Length = 222
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ ++I I A P SV L+AV+K + ++ IR A + G F EN++QEA K
Sbjct: 2 ISSINERITQ--IRASLPP-SVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKA 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L D+ FIG LQ+NK + + F I +V K A L + V +QV
Sbjct: 59 QLHDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQV 118
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIARE 183
+ KSG + + L ++GLM IPP N FY+ + ++A++
Sbjct: 119 KILPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGLNDAEIFYVFNTTYKLAKD 178
Query: 184 C---KLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 179 IAEQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQR 221
>gi|227536720|ref|ZP_03966769.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227243412|gb|EEI93427.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 229
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ Q+I++ V+LVAVSK ++ I A GQ +F EN +QE
Sbjct: 1 MSIAANIEEINQEIKSL---------GVTLVAVSKTKPNEDILQAYEAGQRVFGENMVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+Q IG LQ+NKV I +IE+V K ++ +K R +
Sbjct: 52 LVEKQEQ--LPKDIQWHLIGHLQTNKVKYIAPFIHMIESVDSIKLLKEINKHALKHDRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ + + + + GLM I N K
Sbjct: 110 DCLLQIYIADEDSKFGLDHTELIELLRDEEFSSLQNIRIRGLMGIATNTDNEKVIKEEFY 169
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ +E LSMGM+ D+ LAI G+T +R+GS +FG+R
Sbjct: 170 ELKMLFDGVKSSFFRKEDSFDTLSMGMSSDYRLAIEQGSTMIRLGSTVFGKR 221
>gi|103488501|ref|YP_618062.1| hypothetical protein Sala_3024 [Sphingopyxis alaskensis RB2256]
gi|98978578|gb|ABF54729.1| Protein of unknown function UPF0001 [Sphingopyxis alaskensis
RB2256]
Length = 220
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 115/217 (52%), Gaps = 2/217 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++L + I ++A A+R D + L+AVSK D+ IR + GQ F EN++QEA
Sbjct: 5 ADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQEATA 64
Query: 64 KWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW + DV L IG LQSNK E V+LFD I +V R L+ K + +
Sbjct: 65 KWPALRAELPDVVLHLIGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGKRPQL 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN G E QK G P ++ L + GLM IPPA P P F LL E+A
Sbjct: 125 FVQVNIGNEEQKGGC-PVADLPALLAEATAAGLQIAGLMAIPPADIEPAPFFALLDELAA 183
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L SMGM+ D+E A+ GAT VR+G+ +FG R
Sbjct: 184 RHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD 220
>gi|228471405|ref|ZP_04056200.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas uenonis
60-3]
gi|228306779|gb|EEK15905.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas uenonis
60-3]
Length = 221
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + +I V LVAVSK + +R A GQ +F EN+ QE
Sbjct: 2 IAERLAEIRSQI----------PAQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + D+Q FIG+LQ NKV IV +IE+V E + + + R L +
Sbjct: 52 E--KAPQLPEDIQWHFIGTLQRNKVKYIVPYVSLIESVDSESLLQEIVKQANRFDRQLRI 109
Query: 123 YIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL-- 176
+Q E KSG+ + ++ + ++ + GLM + + + +
Sbjct: 110 LLQYKIAQEESKSGLDHAELLALVDHYLATPEWRERITICGLMGMATLTADKEQVRHEFD 169
Query: 177 --------LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E + +LSMGM+ D+ LA+ +G+T VRIG+ IFGER
Sbjct: 170 TLRALQTELRERYPDISWDELSMGMSNDWPLAVEAGSTIVRIGTAIFGERQY 221
>gi|260904570|ref|ZP_05912892.1| alanine racemase domain-containing protein [Brevibacterium linens
BL2]
Length = 252
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + +A + R V ++ +K + KIRVAL G + ENK+QE
Sbjct: 23 SIRDNLDEVAARAAAAAEASGRTSTDVQVLLATKTQPADKIRVALEHGFTLIGENKVQEL 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D + IG LQ NKV+ + I++V + + ++ + +
Sbjct: 83 VGKAEELADL-DHEAHLIGPLQKNKVNHTLRHAHCIQSVDNLELVTKINNRLEVLDSTVD 141
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
+++QVNT E KSGI P + + + R ++ + GLM I +P + L
Sbjct: 142 IFVQVNTSREDSKSGIAPEEAEGLITELRGLSRMKLRGLMTIGLPGRTPEEIRPSYSDLR 201
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + + T+LSMGM+ DFELAIA GAT VR+GS +FG R
Sbjct: 202 ELREKLIASDVMPAEATELSMGMSNDFELAIAEGATMVRVGSSVFGARDYS 252
>gi|50122548|ref|YP_051715.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
gi|49613074|emb|CAG76525.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
Length = 237
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 99/218 (45%), Gaps = 11/218 (5%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ---EAKKKWIPLRKEW 72
+A R + ++L+AVSK I A++ GQ F EN +Q E + +
Sbjct: 17 AAATHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEGVEKIHYFQENQPNT 76
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
++ FIG LQSNK + FD TV R + A LS + L V +Q+N E
Sbjct: 77 PLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLPPLNVLLQINISNEP 136
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IAREC----- 184
KSGIM ++ + L + GLM IP + + + + + +
Sbjct: 137 SKSGIMVDELTELAASVAALPNLRLRGLMAIPAPETDHERQLAVFKQMTALFQTLSVNYP 196
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGMT D AI +G+T VRIG+ +FG R +
Sbjct: 197 HIDTLSMGMTDDMRAAITAGSTLVRIGTAVFGARDYSS 234
>gi|53714239|ref|YP_100231.1| hypothetical protein BF2949 [Bacteroides fragilis YCH46]
gi|253564755|ref|ZP_04842211.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265766269|ref|ZP_06094310.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|52217104|dbj|BAD49697.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|251946220|gb|EES86597.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263253937|gb|EEZ25402.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163769|emb|CBW23324.1| putative racemase [Bacteroides fragilis 638R]
Length = 222
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNVTDNLKQVLAEL----------PSGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ + +I + K + ++ + IK R +
Sbjct: 51 MTGKYES--LPKDIEWHFIGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAERVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G ++ K+ + + + + GLM + + +
Sbjct: 109 RCLLQIHIAQEETKFGFSFDECKEMLNAAEWKALANIQICGLMGMATNTDSKEQIEREFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A E +LSMGM+ D+ LAI G+T VR+GS IFGER
Sbjct: 169 SLNCFFHEVKKQYFANEPTFCELSMGMSHDYHLAIKEGSTLVRVGSKIFGERVY 222
>gi|53720454|ref|YP_109440.1| hypothetical protein BPSL2846 [Burkholderia pseudomallei K96243]
gi|167817288|ref|ZP_02448968.1| hypothetical protein Bpse9_19264 [Burkholderia pseudomallei 91]
gi|167912418|ref|ZP_02499509.1| hypothetical protein Bpse112_18169 [Burkholderia pseudomallei 112]
gi|217420924|ref|ZP_03452429.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
576]
gi|226194204|ref|ZP_03789803.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pakistan 9]
gi|254191574|ref|ZP_04898077.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pasteur 52237]
gi|254194883|ref|ZP_04901313.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
S13]
gi|254257980|ref|ZP_04949034.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1710a]
gi|254299169|ref|ZP_04966619.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
406e]
gi|52210868|emb|CAH36856.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|157809158|gb|EDO86328.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
406e]
gi|157939245|gb|EDO94915.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pasteur 52237]
gi|169651632|gb|EDS84325.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
S13]
gi|217396336|gb|EEC36353.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
576]
gi|225933669|gb|EEH29657.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pakistan 9]
gi|254216669|gb|EET06053.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1710a]
Length = 232
Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P L + GLM IP +P +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|254489708|ref|ZP_05102904.1| conserved hypothetical protein TIGR00044 [Methylophaga thiooxidans
DMS010]
gi|224465117|gb|EEF81370.1| conserved hypothetical protein TIGR00044 [Methylophaga thiooxydans
DMS010]
Length = 231
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + + I + A R + +V L+AVSK ++K+R + GQ F EN LQ
Sbjct: 1 MTEIKKRFETISSSIRQAESDANRAEKAVQLLAVSKTWPAEKLRTVAALGQTRFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L +++ FIG +QSNK +I + FD +TV R K A L+ + +Q
Sbjct: 61 EALDKIHALADL-ELEWHFIGPIQSNKTRDIATFFDWAQTVDRLKVAKRLNDQRPQQLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
L V IQVN E KSG+ + + +Q +L + GLM IP N
Sbjct: 120 LNVCIQVNIDNEDSKSGVSVEEIQPLAEAIQQFDKLKLRGLMIIPARHDNETAQAETFRR 179
Query: 179 --EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + + LSMGMT D +LAI G+T VRIG+ +FG+R
Sbjct: 180 AFELYQSLQSQFDGIDTLSMGMTADRQLAIQHGSTMVRIGTALFGQR 226
>gi|53725752|ref|YP_103964.1| hypothetical protein BMA2411 [Burkholderia mallei ATCC 23344]
gi|67643504|ref|ZP_00442249.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|121601554|ref|YP_991679.1| hypothetical protein BMASAVP1_A0328 [Burkholderia mallei SAVP1]
gi|124386248|ref|YP_001027174.1| hypothetical protein BMA10229_A1189 [Burkholderia mallei NCTC
10229]
gi|126450302|ref|YP_001082124.1| hypothetical protein BMA10247_2598 [Burkholderia mallei NCTC 10247]
gi|166998486|ref|ZP_02264344.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
PRL-20]
gi|254178844|ref|ZP_04885498.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
10399]
gi|254202680|ref|ZP_04909043.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei FMH]
gi|254208020|ref|ZP_04914370.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei JHU]
gi|254355840|ref|ZP_04972118.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
2002721280]
gi|52429175|gb|AAU49768.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
23344]
gi|121230364|gb|ABM52882.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
SAVP1]
gi|124294268|gb|ABN03537.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei NCTC
10229]
gi|126243172|gb|ABO06265.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei NCTC
10247]
gi|147746927|gb|EDK54004.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei FMH]
gi|147751914|gb|EDK58981.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei JHU]
gi|148024815|gb|EDK82993.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
2002721280]
gi|160694758|gb|EDP84766.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
10399]
gi|238524864|gb|EEP88294.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|243065176|gb|EES47362.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
PRL-20]
Length = 245
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P L + GLM IP +P +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|212691474|ref|ZP_03299602.1| hypothetical protein BACDOR_00966 [Bacteroides dorei DSM 17855]
gi|212665954|gb|EEB26526.1| hypothetical protein BACDOR_00966 [Bacteroides dorei DSM 17855]
Length = 222
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PSGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYE--TLPKDIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA---MGNPKPHFY 175
P +Q++ E K G ++ ++ + K NV G+M + K F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQSYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|283853447|ref|ZP_06370691.1| alanine racemase domain protein [Desulfovibrio sp. FW1012B]
gi|283571167|gb|EFC19183.1| alanine racemase domain protein [Desulfovibrio sp. FW1012B]
Length = 228
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS +L K++IE + R V+LVAVSK D+ + +CGQ +F E+ +QE
Sbjct: 1 MSAEGRLAGVKKRIEEACRRGGRDPAEVTLVAVSKFHDAAAVAELAACGQTVFGESYIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
A K + FIG LQ NK + F +I T+ + A LL + +Q
Sbjct: 61 ALPKMEAGPA--GLTWHFIGHLQRNKGKLAIGRFALIHTLDNLELARLLQKKTGEQGLAP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V +QVN E QKSG+ P L++ GLM +PP +P +P F
Sbjct: 119 QAVCLQVNVAGEAQKSGVSPEGLPALAEAVAAMPALSLSGLMVLPPVFDDPDGARPAFAR 178
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ L LSMGM+ D E AI GAT VR+G+ +FG R
Sbjct: 179 LRELRDGLAARLGLALPVLSMGMSGDLEAAILEGATHVRVGTDLFGPR 226
>gi|269926055|ref|YP_003322678.1| alanine racemase domain protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789715|gb|ACZ41856.1| alanine racemase domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 229
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 11/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ +K + AI + R D+V+++A +K + + AL G EN++QEA
Sbjct: 5 DVYRNALEVIEKCRDRAIASGRTPDAVTIIAAAKTFPVEHVLPALEAGIRDVGENRVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ KW ++L IG+LQ NKV + ++LFD+I + S + +S Q + P
Sbjct: 65 EAKWSDHYIRNAIRLHMIGTLQKNKVKKAINLFDIIHSCSSVELGLRISNY--SQDKLFP 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ ++VN E K+G ++ V Q L + GLM IPP +P+ +++
Sbjct: 123 ILLEVNLANEPSKTGFPASELVPAVEQLGQVPNLKLLGLMAIPPYSPDPEQSRPYFAQLR 182
Query: 182 R-------ECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R +LSMGM+ D+ +AI GAT VRIG IFG R
Sbjct: 183 RLSDDLCSRYDFFGPELSMGMSEDYLVAIEEGATMVRIGRAIFGPR 228
>gi|76808945|ref|YP_334717.1| hypothetical protein BURPS1710b_3346 [Burkholderia pseudomallei
1710b]
gi|76578398|gb|ABA47873.1| conserved hypothetical protein TIGR00044, putative [Burkholderia
pseudomallei 1710b]
Length = 305
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 74 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 133
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 134 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 193
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P L + GLM IP +P +
Sbjct: 194 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 253
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 254 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 303
>gi|209542806|ref|YP_002275035.1| alanine racemase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530483|gb|ACI50420.1| alanine racemase domain protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 248
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 91/197 (46%), Positives = 122/197 (61%), Gaps = 1/197 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRFIGSLQ 83
D+V+LVAVSK + AL GQ++F EN++QEA K+ LR +W +L IG LQ
Sbjct: 40 PDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQ 99
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK + V + D+IE++ R A L + R + +QVNTG E QKSG+ Q
Sbjct: 100 TNKALDAVRIADMIESLDRPALADALVRAADRAGRLPDLLVQVNTGDEAQKSGVPRAQAD 159
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR+++ V GLMCIPPA +P PHF L+E+ R L LSMGM+ DFE AIA+
Sbjct: 160 AFITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAA 219
Query: 204 GATSVRIGSGIFGERPC 220
GAT VR+GS IFG+RP
Sbjct: 220 GATHVRVGSAIFGQRPA 236
>gi|196038758|ref|ZP_03106066.1| conserved hypothetical protein TIGR00044 [Bacillus cereus
NVH0597-99]
gi|196030481|gb|EDX69080.1| conserved hypothetical protein TIGR00044 [Bacillus cereus
NVH0597-99]
Length = 224
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + ++ +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRANKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|89890568|ref|ZP_01202078.1| conserved hypothetical protein, TIM-barrel fold [Flavobacteria
bacterium BBFL7]
gi|89517483|gb|EAS20140.1| conserved hypothetical protein, TIM-barrel fold [Flavobacteria
bacterium BBFL7]
Length = 222
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 27/233 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L F++ IE A +LVAVSK ++ A GQ F ENK+QE
Sbjct: 1 MSIKDHLLRFRESIEPKA----------TLVAVSKTKPISDLQEAYDAGQRHFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW D+ IG Q NKV + +I +V + ++ + +K R +
Sbjct: 51 MTEKWE--TLPKDIHWHMIGHTQRNKVKYMAPYVHLIHSVDSPRLLKEINKQAVKNERVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G N+ + + + GLM + N +
Sbjct: 109 DCLLQIHIAEEETKFGFDQNELLELLSSDAFAGYKNVRITGLMGMATFTDNKEQVRKEFK 168
Query: 179 EIA-------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGMT D+E+A+ G+T VRIGS IFG R
Sbjct: 169 SLKTLLDHINDNHLISDSHDLKTLSMGMTGDYEIALEEGSTMVRIGSAIFGSR 221
>gi|149192339|ref|ZP_01870544.1| FkuA [Vibrio shilonii AK1]
gi|148833817|gb|EDL50849.1| FkuA [Vibrio shilonii AK1]
Length = 210
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 11/207 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE---AKKKWIPLRKEWDVQLRFIGSL 82
V L+AVSK + I A GQ F EN +QE + + D++ FIG +
Sbjct: 1 GDVQLLAVSKTKPIEAILDACQAGQRRFGENYVQEGVSKVVHFNEQHGDIDIEWHFIGPI 60
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + FD + TV R K A L+ + + + + V IQVNT E KSG+ Q
Sbjct: 61 QSNKTRPVAEHFDWVHTVDRAKIAQRLNDQRPQGMKPIQVLIQVNTSSEASKSGVDSEQV 120
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMT 194
+ L L + G+M IP + + + +A + ++ LSMGM+
Sbjct: 121 LELAQLISSLPNLTLRGVMSIPENVSDYQSQLIAFKALAEVKNLLAEKHPQVDTLSMGMS 180
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQ 221
D E AI +G+T VRIG+ IFG R
Sbjct: 181 GDMEAAIEAGSTVVRIGTAIFGVRDYS 207
>gi|329946945|ref|ZP_08294357.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
170 str. F0386]
gi|328526756|gb|EGF53769.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
170 str. F0386]
Length = 258
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L +I+ +A A R + L+ VSK V +++R A + G ENK+QEA
Sbjct: 3 DFRHNLAAVHARIDAAAERAGRDAAEIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K + + IG LQ+NK + + D + + + A L + R L
Sbjct: 63 QRK-SENLADLGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAGALDRRLQAAGRGLD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
VY+QVN+ E K G+ P+ DF+ L V GLM + + F ++
Sbjct: 122 VYVQVNSSGEPSKFGLEPDDVADFLTALPAYSSLQVRGLMTLAANTSEEARVRECFRIMR 181
Query: 179 EIARE-CKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 182 RLRDAALQAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGARATP 230
>gi|189467061|ref|ZP_03015846.1| hypothetical protein BACINT_03444 [Bacteroides intestinalis DSM
17393]
gi|189435325|gb|EDV04310.1| hypothetical protein BACINT_03444 [Bacteroides intestinalis DSM
17393]
Length = 222
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + LQ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 1 MNIADNLQQVLNEL----------PEGVRLVAVSKFHPNEAIEEAYRSGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ IV +I + K ++ + K + +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLVEVNKQAEKAGKVV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
+Q++ E K G + +D + + + GLM + + F
Sbjct: 109 NCLLQLHIAEEETKFGFSFEECRDMLAEGEWKTLSNIQLCGLMGMATNTDDNEQIEKEFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS +E K +LSMGM+ D+ AIA+G+T +R+GS IFG+R
Sbjct: 169 SLSSFFKEVKDSWFADTEAFRELSMGMSHDYHQAIAAGSTLIRVGSKIFGDRTY 222
>gi|291167100|gb|EFE29146.1| pyridoxal phosphate enzyme, YggS family [Filifactor alocis ATCC
35896]
Length = 230
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + IE + + K V+LVAV+K +D ++ L G F ENK+QE
Sbjct: 1 MDVKDNLKSVQASIEQARQNSC-EKQEVTLVAVTKTIDVGPMKEVLKEGVSCFGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ V+ IG+LQSNKV I+ ++I ++ R A + + +
Sbjct: 60 ILSKYEKFPDT--VKWHLIGTLQSNKVKYIIDKVEMIHSLDRISLAKEIDRRAKEIGVVM 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
IQVN E K G+ + F+ + + V GLM + P + + + +
Sbjct: 118 KCLIQVNISQEESKHGLDKAEALKFIEEVAQNFSHIQVLGLMGMAPFVEDAEEARPYFRQ 177
Query: 180 I------ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ A+ L LSMGMT D+ +AI G+ VR+G+GIFG+R
Sbjct: 178 LKGLFEEAKNLNLGTGQMKYLSMGMTNDYTVAIEEGSNMVRVGTGIFGKRNYN 230
>gi|257885183|ref|ZP_05664836.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257821035|gb|EEV48169.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 225
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKEL---SC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCSELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|227550462|ref|ZP_03980511.1| alanine racemase domain protein [Enterococcus faecium TX1330]
gi|257888490|ref|ZP_05668143.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257897135|ref|ZP_05676788.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257899133|ref|ZP_05678786.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293377358|ref|ZP_06623562.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
PC4.1]
gi|227180363|gb|EEI61335.1| alanine racemase domain protein [Enterococcus faecium TX1330]
gi|257824544|gb|EEV51476.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257833700|gb|EEV60121.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257837045|gb|EEV62119.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|292644050|gb|EFF62156.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
PC4.1]
Length = 225
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKEL---SC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCNELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|218960505|ref|YP_001740280.1| predicted enzyme with a TIM-barrel fold [Candidatus Cloacamonas
acidaminovorans]
gi|167729162|emb|CAO80073.1| predicted enzyme with a TIM-barrel fold [Candidatus Cloacamonas
acidaminovorans]
Length = 233
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + I + R D ++LVAV+K + I AL G EN++QE
Sbjct: 1 MNIAENIKHLQDNIADILSRLNRK-DEITLVAVTKTHPVEIIETALQSGIEHIGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRF 119
A++K L+ + FIG LQSNK+++++ +I++V + A L L + + +R
Sbjct: 60 ARRKIPFLKVPYKG-FHFIGHLQSNKINQVLELKPFLIQSVHSLELAKKLHLALGRTNRT 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP--PAMGNPKPHFYLL 177
+ IQ+N+ E KSG + K+ + L+++GLM I +P F +
Sbjct: 119 QDILIQINSSQEFSKSGFSLAEAKNAICQISTYSNLHIKGLMTIGMLAEPEVSRPLFARM 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ A+ G+ +RIG+ IFGER
Sbjct: 179 KSLFEEIKALAIPNVDMQYLSMGMSNDYVQALEEGSNMLRIGTAIFGERSY 229
>gi|150006349|ref|YP_001301093.1| hypothetical protein BVU_3868 [Bacteroides vulgatus ATCC 8482]
gi|294776254|ref|ZP_06741739.1| pyridoxal phosphate enzyme, YggS family [Bacteroides vulgatus
PC510]
gi|149934773|gb|ABR41471.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|294449937|gb|EFG18452.1| pyridoxal phosphate enzyme, YggS family [Bacteroides vulgatus
PC510]
Length = 222
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PAGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYE--TLPKDIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA---MGNPKPHFY 175
P +Q++ E K G ++ ++ + K NV G+M + K F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQNYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|152986073|ref|YP_001345889.1| hypothetical protein PSPA7_0494 [Pseudomonas aeruginosa PA7]
gi|150961231|gb|ABR83256.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 230
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 97/226 (42%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A A R +V L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQAELADLS-LNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P + L + GLM IP +
Sbjct: 120 LNICLQVNVSGEASKSGCAPEDLPALAEAVKLLPNLRLRGLMAIPEPTVERAAQHAAFAR 179
Query: 180 IARECKLTKL-----SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L SMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRELLLGLNLGLDTLSMGMSDDLEAAIAEGATWVRIGTALFGARDY 225
>gi|291530262|emb|CBK95847.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum 70/3]
gi|291557078|emb|CBL34195.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum
V10Sc8a]
Length = 241
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ KQ I + A R D+V ++AV+K V +KI A S G + EN++QE
Sbjct: 16 DIKLNYTAIKQNIAEAMDKAGR-CDTVRIMAVTKTVPCEKINYAESLGIDLLGENRVQEF 74
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ ++ ++ FIG LQ NKV I+ +I +V + A+ +
Sbjct: 75 LGKYENYSEK--SEIHFIGGLQKNKVKYIIDKVSMIHSVDSVELAAEIDRRAGSHGLVKD 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +++N G E K GI P++ + + + GLM IPP + + +F + E+
Sbjct: 133 ILLEINIGGEESKGGIAPSELIETAKAVSGLENVRIRGLMTIPP-VNCDEKYFASMQELF 191
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K + LSMGM+ D+ A+ G+T VRIGSG+FG R
Sbjct: 192 ENSKQKYSFLSGMDTLSMGMSGDYATAVKYGSTLVRIGSGLFGYRNYS 239
>gi|167750503|ref|ZP_02422630.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
gi|167656429|gb|EDS00559.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
Length = 241
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ KQ I + A R D+V ++AV+K V +KI A S G + EN++QE
Sbjct: 16 DIKLNYTAVKQNIAEAMDKAGR-CDTVRIMAVTKTVPCEKINYAESLGIDLLGENRVQEF 74
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ ++ ++ FIG LQ NKV I+ +I +V + A+ +
Sbjct: 75 LGKYENYSEK--SEIHFIGGLQKNKVKYIIDKVSMIHSVDSVELAAEIDRRAGSHGLVKD 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +++N G E K GI P++ + + + GLM IPP + + +F + E+
Sbjct: 133 ILLEINIGGEESKGGIAPSELIETAKAVSGLENVRIRGLMTIPP-VNCDEKYFASMQELF 191
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K + LSMGM+ D+ A+ G+T VRIGSG+FG R
Sbjct: 192 ENSKQKYSFLSGMDTLSMGMSGDYATAVKYGSTLVRIGSGLFGYRNYS 239
>gi|295112147|emb|CBL28897.1| pyridoxal phosphate enzyme, YggS family [Synergistetes bacterium
SGP1]
Length = 231
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 102/230 (44%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++++ +A LA R V LV V+K ++++ S ENK+QE
Sbjct: 1 MGLKEHAAAIRERVARTAALAGRKPSDVLLVGVTKTRSVQEMQEVASL-VDAIGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K R IG LQ+NK V LFD ++++ A L + SR L
Sbjct: 60 AQVKREAWGDHPTPPWRLIGHLQNNKARRAVELFDAVDSLDSIPLAERLDRIAGELSRRL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V I+VNT E K+G+ P + L +EGLM I P + +E+
Sbjct: 120 SVLIEVNTAKEASKTGMAPEAFPALLDRVLTLPNLKLEGLMTIGPLTDDEVRVRQAFAEL 179
Query: 181 A---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE I G+T VRIG+ +FG R +
Sbjct: 180 RGMAEDARGRCGLPLPVLSMGMSGDFEWGILEGSTMVRIGTALFGPREYK 229
>gi|69244709|ref|ZP_00602973.1| Protein of unknown function UPF0001 [Enterococcus faecium DO]
gi|257879371|ref|ZP_05659024.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257881763|ref|ZP_05661416.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257890197|ref|ZP_05669850.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257893525|ref|ZP_05673178.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260558813|ref|ZP_05831002.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206523|ref|ZP_05921223.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565433|ref|ZP_06445882.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecium
D344SRF]
gi|293553190|ref|ZP_06673827.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1039]
gi|293560469|ref|ZP_06676961.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|293568295|ref|ZP_06679619.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|294614706|ref|ZP_06694608.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1636]
gi|294618996|ref|ZP_06698491.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1679]
gi|294621608|ref|ZP_06700773.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
U0317]
gi|314937866|ref|ZP_07845182.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a04]
gi|314941357|ref|ZP_07848250.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133C]
gi|314950116|ref|ZP_07853402.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0082]
gi|314951343|ref|ZP_07854397.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133A]
gi|314992826|ref|ZP_07858227.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133B]
gi|314997986|ref|ZP_07862881.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a01]
gi|68196300|gb|EAN10729.1| Protein of unknown function UPF0001 [Enterococcus faecium DO]
gi|257813599|gb|EEV42357.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257817421|gb|EEV44749.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257826557|gb|EEV53183.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257829904|gb|EEV56511.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260075272|gb|EEW63585.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260079233|gb|EEW66924.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162762|gb|EFD10613.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecium
D344SRF]
gi|291589007|gb|EFF20831.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291592444|gb|EFF24051.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1636]
gi|291594657|gb|EFF26039.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1679]
gi|291598773|gb|EFF29825.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
U0317]
gi|291602600|gb|EFF32815.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1039]
gi|291605617|gb|EFF35059.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313587998|gb|EFR66843.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a01]
gi|313592630|gb|EFR71475.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133B]
gi|313596560|gb|EFR75405.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133A]
gi|313599780|gb|EFR78623.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133C]
gi|313642724|gb|EFS07304.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a04]
gi|313643557|gb|EFS08137.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0082]
Length = 225
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+
Sbjct: 62 EKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKEL---SC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCSELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|296269390|ref|YP_003652022.1| alanine racemase domain-containing protein [Thermobispora bispora
DSM 43833]
gi|296092177|gb|ADG88129.1| alanine racemase domain protein [Thermobispora bispora DSM 43833]
Length = 249
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 106/226 (46%), Gaps = 11/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+IE + A R + ++L+AV+K + IR+ G EN+ QEA
Sbjct: 20 LASALARVEQRIEEACRAAGRRRSEITLIAVTKTYPASDIRLLAGLGVTDIGENRDQEAS 79
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ FIG LQ+NK +V D+I +V R + ++LS E ++ R +
Sbjct: 80 AKVAECADL-DLTWHFIGQLQTNKARSVVRYADLIHSVDRSRLVTVLSREAVRAGREVGC 138
Query: 123 YIQVNTGYEIQ-----KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+QV+ + G P + D L + G+M + P G+P F L
Sbjct: 139 LVQVSLDPPTPEGTSGRGGARPEEVLDLAGQIAAAEGLRLRGVMAVAPLGGDPAEAFARL 198
Query: 178 SEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
EIAR + +S GM+ D AIA GAT VRIG+ + G R
Sbjct: 199 REIARAVQAEHPDAGIISAGMSGDLAEAIACGATHVRIGTALLGRR 244
>gi|225873891|ref|YP_002755350.1| conserved hypothetical protein TIGR00044 [Acidobacterium capsulatum
ATCC 51196]
gi|225792315|gb|ACO32405.1| conserved hypothetical protein TIGR00044 [Acidobacterium capsulatum
ATCC 51196]
Length = 243
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N+L ++ I + A R ++SV L+AVSK + I A++ G +F EN++QE
Sbjct: 10 TFSNRLAQVEESIAAACRHAGRTRESVQLMAVSKTHPADAIAEAVAAGVTLFGENRVQEF 69
Query: 62 KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++K + ++ IG LQSNK + +F ++TV + A L + +
Sbjct: 70 QQKAQELEQLGIQNAEVHLIGHLQSNKTGKAAEIFAGVDTVDSLRLAERLQDAAARLGKT 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL--NVEGLMCIPPAMGNPKPHFYLL 177
LPV +++ E K+G+ P + +L R + GLM + P G
Sbjct: 130 LPVLLEIKLSEEEAKTGLSPESEETRTLLERLPELTALKMRGLMTVAPLTGGETGTRDCF 189
Query: 178 SEIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +LSMGM+ DF +AI G+T VRIG+ +FG+R
Sbjct: 190 RRLRKLRDAWSAAYPRLNFEELSMGMSGDFAIAIEEGSTCVRIGTALFGKR 240
>gi|262068235|ref|ZP_06027847.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium
periodonticum ATCC 33693]
gi|291378103|gb|EFE85621.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium
periodonticum ATCC 33693]
Length = 223
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V L+AV+K + I L GQ I ENK+Q
Sbjct: 1 MSIQTSVEEILEDI----KKYSPYPEKVKLIAVTKYSSVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + + DV+ FIG+LQ NKV I+ I +V++ A ++ + + +
Sbjct: 57 VKDKIEYFKSKNTDVKWHFIGNLQKNKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKT 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ + I++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDILIEINVYGEESKQGYSLDELKCDIIELKNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFDNNLTELSMGMSNDYKIALQEGSTYIRVGTKIF 222
>gi|121535248|ref|ZP_01667062.1| alanine racemase domain protein [Thermosinus carboxydivorans Nor1]
gi|121306133|gb|EAX47061.1| alanine racemase domain protein [Thermosinus carboxydivorans Nor1]
Length = 240
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 17/236 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDS----VSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS+ L+ Q I ++ V+++AV+K D +R A+ G I EN
Sbjct: 1 MSIAGNLETIAQNIRSALARRSTHIAEQLQPVTIIAVTKNQDIAAMREAIDHGVTIVGEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++QEA K L + V+ IG LQ+NKV + VSLFD+I +V E+ A + K
Sbjct: 61 RVQEAMTKHKSLDRT--VEWHLIGHLQTNKVRQAVSLFDLIHSVDSERLAREIDRAAAKI 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + +QVN E K G+ P + L + + GLM I P + + +
Sbjct: 119 GKRQNILLQVNVAGEETKFGVSPREAIVLARLVAGLEHVRLCGLMTIAPFFDDAEMTRPV 178
Query: 177 LSEIAR---ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + E K + LSMGMT D+ +A+ GA VRIG+GIFG R +
Sbjct: 179 FRELYQIYCELKALNLPGSDIKWLSMGMTNDYTVAVEEGANLVRIGTGIFGPRQYR 234
>gi|271964379|ref|YP_003338575.1| alanine racemase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270507554|gb|ACZ85832.1| alanine racemase domain protein [Streptosporangium roseum DSM
43021]
Length = 234
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + I + A R ++ ++L+AVSK + +R+ + G EN+ QEA
Sbjct: 10 IAAGLAEVEASIAEACRAAGRAREELTLIAVSKTYPASDVRLLAALGVTDVGENRDQEAS 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ FIG LQ+NK + DV+ +V R + + LS E ++ R +
Sbjct: 70 VKVRECAGL-DLTWHFIGQLQTNKARSVAGYADVVHSVDRPRLVTALSQEAVRAGREITC 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QV + + G P + + G+M + P P F L EIA+
Sbjct: 129 LVQVALDGDPGRGGARPADVAALAEALAVAPGIRLGGVMAVAPLGEEPGRAFARLREIAQ 188
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+S GM+ D AIA+GAT +R+G+ + G R
Sbjct: 189 VMRDAHPGADVISAGMSGDMSEAIANGATHLRVGTALLGRR 229
>gi|237740280|ref|ZP_04570761.1| proline synthetase associated protein [Fusobacterium sp. 2_1_31]
gi|229422297|gb|EEO37344.1| proline synthetase associated protein [Fusobacterium sp. 2_1_31]
Length = 223
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V L+AV+K + I L GQ I ENK+Q
Sbjct: 1 MSIQASVEEILEDI----KKYSPYPEKVKLIAVTKYSTVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + + D++ FIG+LQ NKV I+ I +V++ A ++ + + +
Sbjct: 57 VKDKIEYFKNKNTDIKWHFIGNLQKNKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKT 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K ++ + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIMELKNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFDNNLTELSMGMSNDYKIALQEGSTYIRVGTKIF 222
>gi|158338463|ref|YP_001519640.1| hypothetical protein AM1_5365 [Acaryochloris marina MBIC11017]
gi|158308704|gb|ABW30321.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 21/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
++L +++ ++ + SV L+AVSK + + IR A G F E+++QE
Sbjct: 7 LTLKDRVISIQRSL----------PGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ ++ IG LQSNK V FD I +V A L+ + +
Sbjct: 57 AIQKQAELQDLSELTWHLIGHLQSNKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSP 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----------AMGN 169
+ +QV + K G K + + L+ GLM I P
Sbjct: 117 QLCLQVKPLPDPDKFGWTFAGLKADLPALKACAHLHWRGLMTILPMGLSSHEILNAFHET 176
Query: 170 PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + + L +LSMGM+ D++LA+ +GAT VR+G +FG+RP
Sbjct: 177 QQLAQDITQQFPEDFTLHELSMGMSNDYQLAVQAGATMVRVGRRLFGDRPLP 228
>gi|329847397|ref|ZP_08262425.1| Alanine racemase domain protein [Asticcacaulis biprosthecum C19]
gi|328842460|gb|EGF92029.1| Alanine racemase domain protein [Asticcacaulis biprosthecum C19]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 96/213 (45%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
++ + +A RP S L AVSK + I L G F EN++QEA+ +W
Sbjct: 14 YLKLMDQMHKALAVAGRPAGSAFLTAVSKTQPWEVIAPVLKAGHRRFGENRVQEARDRWS 73
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
P+R +W ++LR IG LQSNK +E V+ FDVIETV R K A L+ E+ KQ R Y+Q
Sbjct: 74 PVRGDWPGLELRLIGPLQSNKAAEAVAFFDVIETVDRSKIARALADEIQKQGRRPVTYVQ 133
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK+G++P + F+ CR L V GLMCIPP G P+F LL +IA
Sbjct: 134 VNIGEEDQKAGVLPAEADAFIRACRDDCGLEVGGLMCIPPVEGPRGPYFGLLRKIAERNG 193
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE A+A GA +R+GS IFG R
Sbjct: 194 VAHLSMGMSDDFETALAFGANEIRVGSAIFGAR 226
>gi|118443487|ref|YP_878018.1| hypothetical protein NT01CX_1945 [Clostridium novyi NT]
gi|118133943|gb|ABK60987.1| conserved hypothetical protein [Clostridium novyi NT]
Length = 223
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F+ +I V+L+AVSK +++ A C F ENK+QE
Sbjct: 1 MSIRENVIKFQNEI----------PKDVTLLAVSKTRTLEELEEAYKCNIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV+ IG LQ+NKV IV +I ++ K + +
Sbjct: 51 LIYKFDNFHK--DVRWHLIGHLQTNKVKYIVGKVYLIHSLDSIKLLKEIERRYSIANEIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----------AMGNP 170
V IQ+N G + KSG++ ++ + C + + V+GLM + P +
Sbjct: 109 NVLIQINIGRDPNKSGVLLENLQELIDECEKCKNVKVKGLMTVIPKGNSATNIEYFIEMK 168
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K + +L +++ K+ LSMGMT D++ A+ GA VRIG GIFG+R
Sbjct: 169 KIYDFLSNKLYNNVKMEFLSMGMTGDYKEALKEGANIVRIGEGIFGKRVYN 219
>gi|326941670|gb|AEA17566.1| putative cytoplasmic protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCVRAGRSLQDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTKVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|254881744|ref|ZP_05254454.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319643711|ref|ZP_07998327.1| hypothetical protein HMPREF9011_03929 [Bacteroides sp. 3_1_40A]
gi|254834537|gb|EET14846.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317384653|gb|EFV65616.1| hypothetical protein HMPREF9011_03929 [Bacteroides sp. 3_1_40A]
Length = 222
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PAGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYE--TLPKDIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA---MGNPKPHFY 175
P +Q++ E K G ++ ++ + K NV G+M + K F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQNYFSDSEHFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|237712085|ref|ZP_04542566.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265751787|ref|ZP_06087580.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 3_1_33FAA]
gi|229453406|gb|EEO59127.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236579|gb|EEZ22049.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 3_1_33FAA]
Length = 222
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PTGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYE--TLPKDIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA---MGNPKPHFY 175
P +Q++ E K G ++ ++ + K NV G+M + K F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQSYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|146301191|ref|YP_001195782.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146155609|gb|ABQ06463.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 219
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L K + + V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIQSNLNTIKATL----------PEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +QSNKV + +I V K ++ + +K +R +
Sbjct: 51 MTEKWEQMPK--DIQWHMIGHVQSNKVKFMAPYVTLIHGVDSLKLLQEINKQALKNNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G+ N+ + + ++ + + GLM + + +
Sbjct: 109 DCLLQIYIAEEESKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQNQIKKEFT 168
Query: 179 EIA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C L +SMGM+ D++LAI G+T VRIGS IFG R
Sbjct: 169 HLKSIFNSIKNLKTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR 219
>gi|71083067|ref|YP_265786.1| hypothetical protein SAR11_0361 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762507|ref|ZP_01264472.1| hypothetical protein PU1002_04541 [Candidatus Pelagibacter ubique
HTCC1002]
gi|71062180|gb|AAZ21183.1| hypothetical protein SAR11_0361 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718309|gb|EAS84959.1| hypothetical protein PU1002_04541 [Candidatus Pelagibacter ubique
HTCC1002]
Length = 216
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 6/215 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L + +++ K P ++AVSK + I + G + F ENK+QEA K
Sbjct: 6 KNLIYIEDLVKSKVNHVKLP----KIIAVSKTFPIENILPLIEYGHLHFGENKVQEALDK 61
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W+ ++ + +QL IG LQ+NKV + +FD I + EK A+ ++ E KQ + ++
Sbjct: 62 WVHIKNQNPSIQLHLIGRLQTNKVKVALRIFDYIHALDSEKLANKIADEQTKQGKKPKIF 121
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVN G E QKSGI + DF C+ L++ G MCIPP N K +F ++EI +E
Sbjct: 122 IQVNIGNENQKSGINKERLSDFYKFCKN-LNLDIIGTMCIPPNDDNTKKYFSEMNEINQE 180
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI AT VR+GS IFG R
Sbjct: 181 LDFKELSMGMSGDYLEAIRYNATYVRVGSKIFGSR 215
>gi|311747401|ref|ZP_07721186.1| pyridoxal phosphate enzyme, YggS family [Algoriphagus sp. PR1]
gi|126574685|gb|EAZ79072.1| pyridoxal phosphate enzyme, YggS family [Algoriphagus sp. PR1]
Length = 225
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 27/236 (11%)
Query: 1 MSLGNKLQVFKQK-IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + L+ K+ + + + LVAVSK ++ A + G F ENK+Q
Sbjct: 1 MDIKANLENVKKTFVNPNCL----------LVAVSKTKPIADLKAAYATGIRDFGENKVQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K D++ IG LQ NKV I +I V K ++ + K R
Sbjct: 51 ELQDKHPE--LPEDIRWHMIGHLQRNKVKYIAPYVYLIHGVDSFKLLKEINKQGAKIDRV 108
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPHFYLL 177
+ V +Q++ E K G + + K + ++GLM + +
Sbjct: 109 ISVLLQIHIAEEESKFGFDKAELESMFKDDHFKALTHVKIKGLMGMATFTQDQNQVRKEF 168
Query: 178 S------------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ K+ +LSMGM+ D+ +A G+T VRIGS IFG R
Sbjct: 169 KSLKGLFEELKQQELPDFVKMEELSMGMSGDYLIAQEEGSTMVRIGSAIFGARDYN 224
>gi|324327799|gb|ADY23059.1| hypothetical protein YBT020_19155 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 224
Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQKNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + +
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKTL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTKVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|303326576|ref|ZP_07357019.1| pyridoxal phosphate enzyme, YggS family [Desulfovibrio sp.
3_1_syn3]
gi|302864492|gb|EFL87423.1| pyridoxal phosphate enzyme, YggS family [Desulfovibrio sp.
3_1_syn3]
Length = 239
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ ++++ + A R ++ V+L+AVSK+ + + GQV F EN +QEA +
Sbjct: 8 RERYTRVLERLDAACAAAGRGREDVALIAVSKLHPAADVAAVARAGQVDFGENYVQEALQ 67
Query: 64 KWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +V+ IG +QS K +++ F +I T+ K A L +
Sbjct: 68 KREELAGEPACRNVRWHMIGHVQSRKAAQVAGAFALIHTLDSRKLADGLERRLAVLEARQ 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM---GNPKPHFYL 176
PV ++VN E QKSGIM L + GLMC+PP +PHF
Sbjct: 128 PVLMEVNVAAEPQKSGIMAEDLPVLADYIVENCPHLELRGLMCLPPVFDAGEAARPHFAR 187
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L + E + L +LSMGM+ DFE A+A GAT VRIG+ IFG RP +T
Sbjct: 188 LRVLCEELRARLGLPLPELSMGMSGDFEAAVAEGATLVRIGTDIFGPRPPRT 239
>gi|317476602|ref|ZP_07935847.1| YggS family pyridoxal phosphate enzyme [Bacteroides eggerthii
1_2_48FAA]
gi|316907198|gb|EFV28907.1| YggS family pyridoxal phosphate enzyme [Bacteroides eggerthii
1_2_48FAA]
Length = 222
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ V LVAVSK ++ I A S GQ +F E+K+QE
Sbjct: 1 MSIAENIKKVLDEL----------PQGVQLVAVSKFHPNEAIEEAYSAGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ I+ +I V K + ++ + K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYIIPYVALIHGVDSYKLLTEINKQAAKAERTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G ++ ++ +Q + + GLM + N +
Sbjct: 109 NCLLQLHIAQEETKFGFSFDECREMLAANEWKQFKNIRICGLMGMATNTDNTEQIKAEFC 168
Query: 179 EI---ARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLSSFFQEVKATWFADAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERIY 222
>gi|301055391|ref|YP_003793602.1| hypothetical protein BACI_c38560 [Bacillus anthracis CI]
gi|300377560|gb|ADK06464.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 224
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTNVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + ++ +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRANKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A---RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|148657357|ref|YP_001277562.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1]
gi|148569467|gb|ABQ91612.1| alanine racemase domain protein [Roseiflexus sp. RS-1]
Length = 244
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 25/242 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ ++L++ +++I +A A R ++ LV V+K + IR AL G EN++QEA
Sbjct: 3 TFIDRLRIVRERIAAAAQRAHRDPATIRLVGVTKAQPVEAIRTALDAGLCEIGENRVQEA 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE----MIKQ 116
+ K + + + IG LQ+NK + +LFD++ +V + A ++
Sbjct: 63 EAKMTALEAERYRLTWHLIGHLQTNKAKKAATLFDMVHSVDSLRLAQAINRYAAEVRRDP 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK----------YQLNVEGLMCIPPA 166
R LP+ +QVN E KSG + + + L+V GLM I P
Sbjct: 123 GRRLPILLQVNVSGEATKSGFDLYGWETQPDVYERFCADVEQILALPHLDVRGLMTIAPW 182
Query: 167 ---MGNPKPHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+P F + LSMGMT DFE+AI GAT VRIG IFG
Sbjct: 183 APDPEAARPVFRATRRLRDALAQRFPIAPWRDLSMGMTDDFEVAIEEGATIVRIGRAIFG 242
Query: 217 ER 218
ER
Sbjct: 243 ER 244
>gi|206900542|ref|YP_002250962.1| hypothetical protein DICTH_1123 [Dictyoglomus thermophilum H-6-12]
gi|206739645|gb|ACI18703.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 235
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 14/228 (6%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
M+ + + +++I A R +++VAVSK V + IR A+ G EN
Sbjct: 1 MNEFSFIAENWKKVQERIIKKAEECGRDPSEINVVAVSKGVPPEGIREAVKVGIKAIGEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++QEA+KK L + + +G LQ NKV + ++LF +I +V + A L+ K+
Sbjct: 61 RVQEAEKKIS-LLSDLSCEWHMVGHLQKNKVKKAINLFSLIHSVDTFELAEELNKYAEKE 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V IQ+N E K G + + LNV+GLM I P G+ +
Sbjct: 120 EKEVDVLIQLNLSEEPTKYGFKEEEFWKVYEKIFELKNLNVKGLMTIGPLTGDKNEVRKV 179
Query: 177 LSEI---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + L LSMGM+ DFE+AI GA +R+G IF
Sbjct: 180 FRKLYTIWEKLKENTKLSLPYLSMGMSEDFEIAIEEGANLLRLGRIIF 227
>gi|218295591|ref|ZP_03496387.1| alanine racemase domain protein [Thermus aquaticus Y51MC23]
gi|218243750|gb|EED10277.1| alanine racemase domain protein [Thermus aquaticus Y51MC23]
Length = 211
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 100/218 (45%), Gaps = 12/218 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQ 59
MSL ++I + A R V LVAV+K ++IR L G E+++Q
Sbjct: 1 MSLPE----VLERIALACQRAGRDPKEVRLVAVTKGRSVEEIRERVLRYGAFPLGESRVQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA KK + +G LQ NK +I ++ + A L K
Sbjct: 57 EALKKME----LLQAEWHLVGPLQRNKAKFAPRFH-LIHSLDSLRLAEALEGVGAKAGMR 111
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
L V ++VN G E QK G + + + + R+ L V G M +PP G +P F L
Sbjct: 112 LRVLVEVNLGREPQKHGFLEEELPEALARVREMPHLEVLGFMTVPPMGPEGVVRPIFRRL 171
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
S +A L + SMGM++D+E A+ GAT VR+G +F
Sbjct: 172 SLLADRFGLPERSMGMSQDYEWAVEEGATMVRVGRALF 209
>gi|325919600|ref|ZP_08181612.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas gardneri ATCC
19865]
gi|325549936|gb|EGD20778.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas gardneri ATCC
19865]
Length = 230
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + LQ I +A + V L+AVSK + + V + GQ F EN +QE
Sbjct: 1 MT-ASSLQQILDAIHAAATQ--QAHTDVRLLAVSKTRPADALAVLAAQGQRAFGENYVQE 57
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K L ++ IG LQSNK FD ++TV R K LL+ L
Sbjct: 58 AQAKIAELHAL-GLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARYRPDDRAPL 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQVN E K G P + +L + GLM IP P F +
Sbjct: 117 NVLIQVNIDDEDSKHGCAPEAIDALARDIALQPRLQLRGLMAIPAPFPEQARRAAAFTRM 176
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGM+ DF AIA+GAT VR+G+ +FGER
Sbjct: 177 QALFEDLKGRYPQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGER 222
>gi|296327467|ref|ZP_06870013.1| YggS family pyridoxal phosphate enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296155293|gb|EFG96064.1| YggS family pyridoxal phosphate enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 223
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L Q I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEKFLETRQNICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ + FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ V +++N E K G ++ K +I + LN+ G+M + P + K + SE
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 180 IAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|169629098|ref|YP_001702747.1| hypothetical protein MAB_2011 [Mycobacterium abscessus ATCC 19977]
gi|169241065|emb|CAM62093.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 239
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 16/235 (6%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
M+ L L ++++ +A +A R + L+ V+K + + G F E+
Sbjct: 1 MTRAEELSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGES 60
Query: 57 KLQEAKKKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+ QEA K D++ +G+LQ NK + + +V + + L
Sbjct: 61 RDQEAAAKVALLDQAGHADIRWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARG 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSG-----IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ P+ I + + + ++ L + GLM +PP +
Sbjct: 121 AGEKREPLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQVVASEHLELAGLMALPPREAD 180
Query: 170 PKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F L + R + +LS GM+ D E AI G+T VR+G+ + G+RP
Sbjct: 181 PDQAFRRLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRP 235
>gi|88705480|ref|ZP_01103191.1| conserved hypothetical protein [Congregibacter litoralis KT71]
gi|88700570|gb|EAQ97678.1| conserved hypothetical protein [Congregibacter litoralis KT71]
Length = 229
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + Q++ ++ +RP DSV ++AVSK ++ +R A + G F EN LQEA
Sbjct: 6 IAANIAKVLQQVSSAQEKYQRPPDSVRVMAVSKTQSAEAVRDAAAAGLTDFGENYLQEAL 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + FIG +QSNK I FD + +V REK LS + L +
Sbjct: 66 EKIKSCADLA-LTWHFIGPIQSNKTRAIAEHFDWVHSVDREKILRRLSEQRDPSMAPLNL 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
IQVN E KSGI P Q + L Q + + GLM IP + K L+
Sbjct: 125 CIQVNVSGEDSKSGITPRQLAPILALATQLPNIRLRGLMAIPAPAEDFGAQKAACDSLAS 184
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LS+GM+ D E A+A+G+T VRIG+ IFG R
Sbjct: 185 LFEDARKEHPTLDTLSIGMSADLEAAVAAGSTMVRIGTAIFGAR 228
>gi|52141588|ref|YP_085241.1| hypothetical protein BCZK3659 [Bacillus cereus E33L]
gi|51975057|gb|AAU16607.1| conserved hypothetical protein [Bacillus cereus E33L]
Length = 224
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + ++ +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRANKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVTFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A---RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|114799476|ref|YP_762223.1| alanine racemase domain-containing protein [Hyphomonas neptunium
ATCC 15444]
gi|114739650|gb|ABI77775.1| alanine racemase, N-terminal domain protein [Hyphomonas neptunium
ATCC 15444]
Length = 222
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 89/193 (46%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKV 87
L+AVSK + I AL+ GQ +F EN++QEA++ W R+ + D+ L IG LQ+NK
Sbjct: 29 ELIAVSKFQPDEAIEAALAAGQRVFGENRVQEAQQHWQARRETYADLTLHLIGPLQTNKA 88
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++ V LFDVI+T+ REK A L+ M K+ R + IQVNTG E QK+G+ P++ +
Sbjct: 89 ADAVRLFDVIQTLDREKLADALAAAMEKEGRRPKMLIQVNTGEEDQKAGVFPSKVGALLR 148
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
R+ L V+GLMCIPP PHF LL +IA++ L LSMGM+ D+ELA GAT
Sbjct: 149 YARESANLEVDGLMCIPPVDEPAGPHFALLKKIAKDYGLPVLSMGMSGDYELAARYGATH 208
Query: 208 VRIGSGIFGERPC 220
VR+G+ FGER
Sbjct: 209 VRVGTAFFGERNT 221
>gi|281355307|ref|ZP_06241801.1| alanine racemase domain protein [Victivallis vadensis ATCC BAA-548]
gi|281318187|gb|EFB02207.1| alanine racemase domain protein [Victivallis vadensis ATCC BAA-548]
Length = 226
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + ++ +A R D V L+AVSK ++ IR G +F E++
Sbjct: 1 MSELTHHYDEVAARLARAAAEDGRSADEVRLLAVSKTFPAEMIRELYEHGVRLFGESRAP 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K D++ FIG LQ+NKV ++V L VI +V + + + ++ R
Sbjct: 61 ELAEKAAA--LPADIEWHFIGRLQANKVRKVVQLAGVIHSVDTPELLTRIDRIAGEEGRR 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
V ++ N E K+G+ + + F ++ +G M + P P F L
Sbjct: 119 PVVLLEANVSGEESKAGVPVGELEAFARQAASLPNVDFQGFMTMAPFDAEPFRIAAIFEL 178
Query: 177 LSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E +L LSMGM+ DFE+A G+T VR+GS IFG R
Sbjct: 179 LKLTRDELEGKLNRQLPILSMGMSGDFEIAARHGSTLVRVGSLIFGAR 226
>gi|113952848|ref|YP_729817.1| hypothetical protein sync_0599 [Synechococcus sp. CC9311]
gi|113880199|gb|ABI45157.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. CC9311]
Length = 224
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 13/221 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ Q + DSV+L+AVSK + +R + GQV F E+++QEA
Sbjct: 10 TIQSRWQAIHAE----------CPDSVNLLAVSKGHPAMAVRELAALGQVDFGESRVQEA 59
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQ+NKV +V F VI ++ + A S ++++R
Sbjct: 60 LPKQQDLEDLSSLRWHFIGRLQANKVRAVVRAFPVIHSIDSQGLAERTSRIAVEENRIPE 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
V+ QV + K G P+ ++ + L GLM + P + + F+
Sbjct: 120 VFFQVKLREDPAKGGWEPDALREVWPQLQSLPGLKPIGLMTMAPLGLGLEDRQSLFHDCR 179
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A E L++ SMGM+ D++ A +GAT VR+GSG+FG RP
Sbjct: 180 TLADELALSECSMGMSGDWKQAAKAGATWVRVGSGLFGPRP 220
>gi|75909109|ref|YP_323405.1| hypothetical protein Ava_2899 [Anabaena variabilis ATCC 29413]
gi|75702834|gb|ABA22510.1| Protein of unknown function UPF0001 [Anabaena variabilis ATCC
29413]
Length = 222
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 14/223 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ ++I + I A P SV L+AV+K + ++ IR A + G F EN++QEA K
Sbjct: 2 ISSINERITH--IRASLPP-SVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQA 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ D+ FIG LQ+NK + + F I +V K A L + V +QV
Sbjct: 59 QLQDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQV 118
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIA-- 181
+ KSG + + Q L ++GLM IPP N ++ + ++A
Sbjct: 119 KILPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGLNDAKILHVFNSTSKLAED 178
Query: 182 ------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 179 IAEQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQR 221
>gi|255015185|ref|ZP_05287311.1| hypothetical protein B2_14854 [Bacteroides sp. 2_1_7]
gi|262381194|ref|ZP_06074332.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 2_1_33B]
gi|262296371|gb|EEY84301.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 2_1_33B]
Length = 222
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQSNKV +I +I ++ K + ++ + K R +
Sbjct: 51 L--SAKQKVLPEDIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKYDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V ++++ E K G+ P + K+ + + + GLM + +
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I ++SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 169 KIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY 222
>gi|86131768|ref|ZP_01050365.1| alanine racemase domain-containing protein [Dokdonia donghaensis
MED134]
gi|85817590|gb|EAQ38764.1| alanine racemase domain-containing protein [Dokdonia donghaensis
MED134]
Length = 215
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 21/227 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F++ I V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAENILRFRESI----------PPHVTLVAVSKTKPVADLMEAYETGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +Q+NKV + ++ V R K ++ + + R +
Sbjct: 51 MTEKWEEMPK--DIQWHMIGHVQTNKVKFMAPFVSLVHAVDRIKLLKEINKQALANDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V IQV E K G+ + +NV GLM + + +
Sbjct: 109 DVLIQVKIAREDSKFGMAVDDVISLFQSKELDNYPNVNVVGLMGMATFTDDQRQVQAEFE 168
Query: 179 EI-------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LT LS GM+ D++LAI +G+T +R+GS IFG R
Sbjct: 169 LLEGLFLRFRESANLTILSSGMSGDYKLAIDNGSTMIRVGSSIFGAR 215
>gi|150007199|ref|YP_001301942.1| hypothetical protein BDI_0544 [Parabacteroides distasonis ATCC
8503]
gi|256840575|ref|ZP_05546083.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149935623|gb|ABR42320.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737847|gb|EEU51173.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 222
Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 102/234 (43%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQSNKV +I +I ++ K + ++ + K +R +
Sbjct: 51 L--SAKQKVLPEDIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V ++++ E K G+ P + K+ + + + GLM + +
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I ++SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 169 KIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY 222
>gi|30263902|ref|NP_846279.1| hypothetical protein BA_4039 [Bacillus anthracis str. Ames]
gi|47529332|ref|YP_020681.1| hypothetical protein GBAA_4039 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186750|ref|YP_030002.1| hypothetical protein BAS3751 [Bacillus anthracis str. Sterne]
gi|49478440|ref|YP_037962.1| hypothetical protein BT9727_3642 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65321229|ref|ZP_00394188.1| COG0325: Predicted enzyme with a TIM-barrel fold [Bacillus
anthracis str. A2012]
gi|118479120|ref|YP_896271.1| hypothetical protein BALH_3530 [Bacillus thuringiensis str. Al
Hakam]
gi|165872302|ref|ZP_02216939.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0488]
gi|167636418|ref|ZP_02394717.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0442]
gi|167641121|ref|ZP_02399376.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0193]
gi|170688830|ref|ZP_02880033.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0465]
gi|170708807|ref|ZP_02899243.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0389]
gi|177654885|ref|ZP_02936602.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0174]
gi|190565832|ref|ZP_03018751.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis
Tsiankovskii-I]
gi|196035936|ref|ZP_03103338.1| conserved hypothetical protein TIGR00044 [Bacillus cereus W]
gi|196045910|ref|ZP_03113139.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB108]
gi|218905030|ref|YP_002452864.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH820]
gi|225865882|ref|YP_002751260.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB102]
gi|227813190|ref|YP_002813199.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
CDC 684]
gi|229603782|ref|YP_002868136.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0248]
gi|254683390|ref|ZP_05147250.1| hypothetical protein BantC_06015 [Bacillus anthracis str.
CNEVA-9066]
gi|254721434|ref|ZP_05183223.1| hypothetical protein BantA1_03095 [Bacillus anthracis str. A1055]
gi|254735940|ref|ZP_05193646.1| hypothetical protein BantWNA_12346 [Bacillus anthracis str. Western
North America USA6153]
gi|254739812|ref|ZP_05197505.1| hypothetical protein BantKB_02134 [Bacillus anthracis str. Kruger
B]
gi|254751002|ref|ZP_05203041.1| hypothetical protein BantV_00982 [Bacillus anthracis str. Vollum]
gi|254757940|ref|ZP_05209967.1| hypothetical protein BantA9_06520 [Bacillus anthracis str.
Australia 94]
gi|30258546|gb|AAP27765.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
Ames]
gi|47504480|gb|AAT33156.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
'Ames Ancestor']
gi|49180677|gb|AAT56053.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
Sterne]
gi|49329996|gb|AAT60642.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418345|gb|ABK86764.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711978|gb|EDR17518.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0488]
gi|167510901|gb|EDR86292.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0193]
gi|167528160|gb|EDR90947.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0442]
gi|170126292|gb|EDS95183.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0389]
gi|170667185|gb|EDT17945.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0465]
gi|172080396|gb|EDT65483.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0174]
gi|190562751|gb|EDV16717.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis
Tsiankovskii-I]
gi|195991585|gb|EDX55551.1| conserved hypothetical protein TIGR00044 [Bacillus cereus W]
gi|196023350|gb|EDX62028.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB108]
gi|218537784|gb|ACK90182.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH820]
gi|225787955|gb|ACO28172.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB102]
gi|227004092|gb|ACP13835.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
CDC 684]
gi|229268190|gb|ACQ49827.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0248]
Length = 224
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + ++ +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRANKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A---RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|33597453|ref|NP_885096.1| hypothetical protein BPP2901 [Bordetella parapertussis 12822]
gi|33573880|emb|CAE38194.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 267
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 9/209 (4%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A R V L+ VSK VD +IR++ + G ENK+QEA +KW + D++
Sbjct: 40 CQRAGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRKWEAMADLADLRWS 99
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ+NK + + + + A L + + R L VY+QVNT E K G+
Sbjct: 100 VIGHLQTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYVQVNTSGEASKYGL 159
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKL 189
P++ F+ L V GLM + + L + + L +L
Sbjct: 160 HPDEAAAFIRQLPSYGALRVRGLMTLAVLSADAAR-VRQLRTLRDRLRQEAPAGVSLDEL 218
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+E+AI GAT VR+G I+G R
Sbjct: 219 SMGMSGDYEIAIEEGATVVRVGQAIYGAR 247
>gi|282902034|ref|ZP_06309932.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
CS-505]
gi|281193121|gb|EFA68120.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
CS-505]
Length = 222
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + ++ SV L+AVSK V ++ +R A G F E+++QEA
Sbjct: 4 SIAERVTIIRAQL----------PPSVRLIAVSKQVSTQLMREAYGAGIRDFGESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L+ D+ FIG LQSNK + V LF I +V A L L
Sbjct: 54 ASKQIELQDLPDITWHFIGHLQSNKAKKAVELFSWIHSVDNLHIAERLHTIAQTMGTNLY 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QV + QKSG Q + Q L ++GLM IPP + ++ +
Sbjct: 114 SCLQVKILPDPQKSGWTVPQLLAELPFLSQYQSLQIQGLMTIPPWGLKEEQILHVFNHTY 173
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A+E ++ +LSMGM+ D+ELA+ +GAT VR+G+ +FG RP
Sbjct: 174 NLAQEIASQKWANIEMRELSMGMSGDYELAVKAGATMVRLGTILFGNRP 222
>gi|297566665|ref|YP_003685637.1| alanine racemase domain-containing protein [Meiothermus silvanus
DSM 9946]
gi|296851114|gb|ADH64129.1| alanine racemase domain protein [Meiothermus silvanus DSM 9946]
Length = 212
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 8/213 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L ++I+ +A A R ++ LVAV+K ++I+ L G E+++QEA K
Sbjct: 3 LPQVLERIQAAARRAGRDPGAIRLVAVTKGHPPQEIQDKVLRYGHFPLGESRVQEALPKM 62
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ IG LQ NKV +I ++ K A +S + + V ++
Sbjct: 63 AAFP---GLEWHLIGPLQRNKVKFCSGF-RLIHSLDSLKLAEYMSKKAREMGHTFRVLVE 118
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIAR 182
VN E QK G + +Q + R+ L V+GLM I P P+ P F LS +A
Sbjct: 119 VNLSLEPQKHGFLESQLTHALPRIREMEGLEVQGLMTIAPYTEKPQTVRPIFAQLSRLAD 178
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ DFE+A+ GAT VRIG +F
Sbjct: 179 RFDLPERSMGMSGDFEVAVEEGATLVRIGRALF 211
>gi|332291056|ref|YP_004429665.1| alanine racemase domain protein [Krokinobacter diaphorus 4H-3-7-5]
gi|332169142|gb|AEE18397.1| alanine racemase domain protein [Krokinobacter diaphorus 4H-3-7-5]
Length = 215
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 96/227 (42%), Gaps = 21/227 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F++ I V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAENILRFRENI----------PSHVTLVAVSKTKPVSDLMEAYETGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + K D++ IG +Q+NKV + +I V R K ++ + R +
Sbjct: 51 MTDKWEEMPK--DIEWHMIGHVQTNKVKFMAPYVSLIHAVDRLKLIKEVNKQAEANDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ IQ+ E K G+ +NV GLM + N
Sbjct: 109 DILIQIKIAREDSKFGMAVQDAVKLFEENTLENYPHVNVVGLMGMATFTDNQDQITAEFE 168
Query: 179 EI-------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LT LS GM+ D++LAI G+T +R+GS IFG R
Sbjct: 169 LLEGLFLRFRESANLTILSSGMSGDYKLAIDKGSTMIRVGSSIFGAR 215
>gi|218130110|ref|ZP_03458914.1| hypothetical protein BACEGG_01697 [Bacteroides eggerthii DSM 20697]
gi|217987614|gb|EEC53942.1| hypothetical protein BACEGG_01697 [Bacteroides eggerthii DSM 20697]
Length = 222
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ V LVAVSK ++ I A S GQ +F E+K+QE
Sbjct: 1 MSIAENIKKVLDEL----------PQGVQLVAVSKFHPNEAIEEAYSAGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK+ I+ +I V K + ++ + K R +
Sbjct: 51 MTAKYES--LPKDIEWHFIGHLQTNKIKYIIPYVALIHGVDSYKLLTEINKQAAKAERTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q++ E K G ++ ++ +Q + + GLM + N +
Sbjct: 109 NCLLQLHIAQEETKFGFSFDECREMLAANEWKQLKNIRICGLMGMATNTDNTEQIKAEFC 168
Query: 179 EI---ARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLSSFFQEVKATWFADAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERIY 222
>gi|313203129|ref|YP_004041786.1| alanine racemase domain protein [Paludibacter propionicigenes WB4]
gi|312442445|gb|ADQ78801.1| alanine racemase domain protein [Paludibacter propionicigenes WB4]
Length = 222
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 100/234 (42%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +Q + I V LV VSK ++ I A G+ IF E+K+QE
Sbjct: 1 MSIQSNIQSIRTHI----------PSHVRLVCVSKFNPNESILEAYETGERIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D+ FIG LQ+NK+ IV +I V K + + + K + +
Sbjct: 51 LCGKYE--TLPKDIVWHFIGHLQTNKIRYIVPFISLIHGVDSYKLLTEIDKQAAKAGKTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF-----VILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+QV+ E K G+ P++ + + + G+ + F
Sbjct: 109 HCLLQVHIAQEETKFGLSPDELLEMFEAGAWKQLKNIQICGLMGMATYTVNKDQIRREFN 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + K +LSMGM+ DF++AI G+T VR+GS IFG R
Sbjct: 169 GLKTLFDQVKQQYFSNETSFCELSMGMSDDFQIAIEEGSTLVRVGSSIFGHRNY 222
>gi|91776460|ref|YP_546216.1| hypothetical protein Mfla_2108 [Methylobacillus flagellatus KT]
gi|91710447|gb|ABE50375.1| Protein of unknown function UPF0001 [Methylobacillus flagellatus
KT]
Length = 241
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 79/210 (37%), Positives = 96/210 (45%), Gaps = 9/210 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R DSVSL+AVSK + +R GQ F EN LQEA K L+ ++ FIG
Sbjct: 28 AGRAPDSVSLLAVSKAHPASAMRELFLAGQRQFGENYLQEALAKQEQLQDLA-IEWHFIG 86
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I F + +V R K A L+ L V IQVN E KSG
Sbjct: 87 PIQSNKTQPIAQHFHWVHSVDRAKIADRLNAAREPGQTALQVCIQVNVSGESSKSGTSAA 146
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIARECK-----LTKLSMG 192
RQ +L + GLM IP +P+ I + L LSMG
Sbjct: 147 DAIALADHIRQLPKLRLRGLMAIPAPTDDPQEQRSQFRAVRNIYDRLQSAGHDLDTLSMG 206
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPCQT 222
M+ DF AI GAT VR+GS IFG R T
Sbjct: 207 MSEDFPAAIQEGATIVRVGSAIFGARIKPT 236
>gi|257440008|ref|ZP_05615763.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii A2-165]
gi|257197360|gb|EEU95644.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii A2-165]
Length = 239
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++K+ +A A R V L A K ++ + + + +F EN +QE
Sbjct: 9 MREAVLAIREKMAAAAREAGRDPAEVQLCAACKTRTAETVAASAALPIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANFDA-GAYCGKPIHFIGHLQTNKIKKVLGRASLIQSVGSEHLLTAIEKEAAKAGIVQNV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E KSG+ P + + + V+GLM IPP + + L+ +
Sbjct: 128 LLEVNIGGEESKSGVSPEALWPLLDAASAQEHIRVKGLMAIPPVNDDDAQNRRYLAAVHD 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGM+ D+E AI GAT VRIG+ I+GER +
Sbjct: 188 LFVKAGERGYSNVEMQTLSMGMSGDYENAIREGATLVRIGTAIYGERDYR 237
>gi|261367976|ref|ZP_05980859.1| pyridoxal phosphate enzyme, YggS family [Subdoligranulum variabile
DSM 15176]
gi|282569960|gb|EFB75495.1| pyridoxal phosphate enzyme, YggS family [Subdoligranulum variabile
DSM 15176]
Length = 240
Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 14/232 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + ++++ +A A R VSL A K +++R + +F EN +QE
Sbjct: 10 MT--EAVARIRERMAEAARRAGRDPAEVSLCAACKTRTVEEVRYSADLPIDLFGENHVQE 67
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K FIG LQ+NKV+++V +I++V + + +
Sbjct: 68 LVEKTDA-GAYNGKPGHFIGHLQTNKVNKVVGRAALIQSVDSTRLLDKIEAAAARLGLTQ 126
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I++N G E KSG+ P+ + K L + GLM IPPA + +E+
Sbjct: 127 EILIEINIGAEESKSGVGPDDLWPLLEAAAAKEHLRLRGLMAIPPADADDDQTRRFFAEM 186
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGM+ D+ +AI GAT VR+G+ I+G R
Sbjct: 187 RELLAAASDRHYDNAQMDILSMGMSHDYAMAIEEGATIVRVGTAIYGARDYS 238
>gi|256425067|ref|YP_003125720.1| alanine racemase [Chitinophaga pinensis DSM 2588]
gi|256039975|gb|ACU63519.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
Length = 244
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 14/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L +I ++ + R V L+ +K V + IR+A+ G+ + ENK+QE
Sbjct: 4 TIINNLHTVHNRIAHACEKSGRNPADVRLLLATKTVFPEYIRIAIEAGERLIGENKVQEF 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L V+ FIG LQ NKV +++ ++++ R A L + ++ R L
Sbjct: 64 RDKHEALSDLS-VERHFIGHLQHNKVKDVLKYVSCVQSLDRLSIAQELDKRLQQEGRNLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V+IQVNT YE K G+ P F+ + L V+GLM I +P LL
Sbjct: 123 VFIQVNTSYEESKFGLQPADVAGFIRELKSLDTLQVKGLMTIGLLDVDREKMRPSLTLLR 182
Query: 179 EIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM++D ++AIA GA VR+G+ IFG R
Sbjct: 183 QTREQLIAAGIENSDQFK-LSMGMSQDLDMAIAEGADIVRVGTAIFGNR 230
>gi|313895886|ref|ZP_07829440.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975311|gb|EFR40772.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sp. oral taxon
137 str. F0430]
Length = 237
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 19/239 (7%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS + +L+ + +I + V L+AV+K + +R A+ G +
Sbjct: 1 MSDDIMICERLRAVRAEIAQARARRTHVPVEAPVELIAVTKNHPVEAMRTAIDSGVMNIG 60
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QEA K E + + IG LQ+NK V FD+I +V E A+ +
Sbjct: 61 ENRIQEALDKAE--TLEREAKWHLIGHLQTNKAKHAVRQFDLIHSVDSEHLAAEIDKAAE 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH- 173
K + + +QVN E KSG+ + L ++G MCI P N +
Sbjct: 119 KFGKVQNILVQVNLAREASKSGVYREDLDPLLRAVSGLPHLRLQGFMCIAPNYDNEEKCR 178
Query: 174 --FYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F + E+ +E K + LSMGMT D+ +A+ GA VR+G+ IFG R T
Sbjct: 179 PLFREMYELFQEAKEKEPPKADIRYLSMGMTHDYTVAVEEGANLVRVGTAIFGARQYNT 237
>gi|225024179|ref|ZP_03713371.1| hypothetical protein EIKCOROL_01049 [Eikenella corrodens ATCC
23834]
gi|224943204|gb|EEG24413.1| hypothetical protein EIKCOROL_01049 [Eikenella corrodens ATCC
23834]
Length = 234
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKK 64
L + +I +A A RP L+AVSK + +R+ Q F EN LQE ++K
Sbjct: 9 NLHAVRARIWAAAEAAGRP--EPELIAVSKTFPAADVRLLCQKSAQRDFGENYLQEFEEK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L D+ IG +QSNK + TV REK A LS + + L V I
Sbjct: 67 SSELADIPDICWHIIGHIQSNKSRIAAERAHWVHTVDREKIARRLSDQRPETMPPLQVLI 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+VN G E K G+ P + + + +L + GLMC+ + + F ++E
Sbjct: 127 EVNIGGEDVKHGVPPQEETLSELAFQVASLPRLKLRGLMCVARLGSSEEELRQQFGRMNE 186
Query: 180 I-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A+ + LSMGM+ D E A+A GAT VRIGS IFG+R
Sbjct: 187 LLQFLQAQGLDVDVLSMGMSDDLETAVACGATHVRIGSAIFGQRDY 232
>gi|293571728|ref|ZP_06682747.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium E980]
gi|291608185|gb|EFF37488.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium E980]
Length = 225
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELGRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKEL---SC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCNELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|15595591|ref|NP_249085.1| hypothetical protein PA0394 [Pseudomonas aeruginosa PAO1]
gi|218889136|ref|YP_002438000.1| putative PLP dependent enzyme [Pseudomonas aeruginosa LESB58]
gi|254237371|ref|ZP_04930694.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243494|ref|ZP_04936816.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296386893|ref|ZP_06876392.1| putative PLP dependent enzyme [Pseudomonas aeruginosa PAb1]
gi|313111985|ref|ZP_07797772.1| hypothetical protein PA39016_004070007 [Pseudomonas aeruginosa
39016]
gi|141308|sp|P24562|Y394_PSEAE RecName: Full=UPF0001 protein PA0394
gi|9946247|gb|AAG03783.1|AE004476_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|454838|gb|AAA25959.1| ORF 6; putative [Pseudomonas aeruginosa PAO1]
gi|126169302|gb|EAZ54813.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196872|gb|EAZ60935.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769359|emb|CAW25119.1| putative PLP dependent enzyme [Pseudomonas aeruginosa LESB58]
gi|310884274|gb|EFQ42868.1| hypothetical protein PA39016_004070007 [Pseudomonas aeruginosa
39016]
Length = 230
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 97/226 (42%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A A R +V L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQAELADL-PLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E KSG P +Q L + GLM IP +
Sbjct: 120 LNVCLQVNVSGEASKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFAR 179
Query: 180 IARECKLTKL-----SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L SMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 180 LRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225
>gi|167752132|ref|ZP_02424259.1| hypothetical protein ALIPUT_00374 [Alistipes putredinis DSM 17216]
gi|167660373|gb|EDS04503.1| hypothetical protein ALIPUT_00374 [Alistipes putredinis DSM 17216]
Length = 221
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 23/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +++ K + V LVAVSK +++I A GQ IF EN+ QE
Sbjct: 1 MSIADRILRVKSSL----------PGQVELVAVSKTYPAQRIMEAYEAGQRIFGENRPQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ IG LQ+NKV +V +I ++ + A + R +
Sbjct: 51 MAQKYEE--LPKDIEWHLIGHLQTNKVKMVVPFVAMIHSLDSVRLAEAIQKAAAAAGRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V ++++ E KSG + +++V + L V G+M + G+ + +
Sbjct: 109 DVLLEIHVADEESKSGWEWAELQEYVRSGAFARLPNLRVRGVMGVATNTGDEQVIRRDFA 168
Query: 179 EIARE---------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ R + LS+GM+ D+ +A+ GAT VRIGS IFG R
Sbjct: 169 ALQRYKSELSPYFGPEFDTLSIGMSHDYRIALEYGATLVRIGSLIFGARDYS 220
>gi|332659862|gb|AEE85262.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 254
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 100/244 (40%), Gaps = 26/244 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ + +A R + V ++ VSK IR G F EN +QE
Sbjct: 9 TVASALRSVILRARKAAEQVGRDPERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQS 117
+ D++ F+G LQSNK +++ + V + +
Sbjct: 69 ID--KAPQLPEDIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V +QVNT E+ KSGI P+ + + L GLM I P +
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 177 L---------------SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +++ + + + LSMGM+ DFELAI G+T+VR+GS IFG
Sbjct: 187 VYSFPHKPGQTLSNCRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGP 246
Query: 218 RPCQ 221
R
Sbjct: 247 REYP 250
>gi|218887298|ref|YP_002436619.1| alanine racemase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758252|gb|ACL09151.1| alanine racemase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 272
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 78/253 (30%), Positives = 116/253 (45%), Gaps = 33/253 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++ + +++ +A A R V+LVAVSK + + + GQ F EN +QEA
Sbjct: 19 SLLDRWAAVRARVDGAARAAGRDPAGVTLVAVSKFHPAASVAALSAAGQRDFGENYVQEA 78
Query: 62 KKKWIPLRKEWDV----------------QLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
+K + + + FIG LQSNK ++V F ++ TV E
Sbjct: 79 LRKQAEVADMTGMGPDAASGTKVAGGAAPRWHFIGHLQSNKAKDVVGRFALLHTVDSEAL 138
Query: 106 ASLLSLEMIKQSRF--------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
A L + + +QVN G E QKSG+ P+ +L +
Sbjct: 139 ARKLDQRLSGMPAQGAGGVAPGQDILLQVNIGDEEQKSGVDPDDLPALTDAVLALPRLRL 198
Query: 158 EGLMCIPPAMGN---PKPHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSV 208
GLMC+PP + +P+F L E+ L LSMGM+ D E+A+A GAT V
Sbjct: 199 LGLMCMPPIFDDGEASRPYFARLRELRDALSARVGLPLPHLSMGMSHDVEVAVAEGATIV 258
Query: 209 RIGSGIFGERPCQ 221
R+G+ IFG RP +
Sbjct: 259 RVGTDIFGPRPAR 271
>gi|326773558|ref|ZP_08232841.1| pyridoxal phosphate enzyme, YggS family [Actinomyces viscosus C505]
gi|326636788|gb|EGE37691.1| pyridoxal phosphate enzyme, YggS family [Actinomyces viscosus C505]
Length = 266
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 103/225 (45%), Gaps = 10/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 31 NLDAVRARIDAAAKRAGRDTAEIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRK- 89
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + IG LQ+NK + + D + + + A L + R L VY+Q
Sbjct: 90 SENLADLGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAGALDRRLQAAGRGLDVYVQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN+ E K G+ P+ F+ L V GLM + + + F ++ +
Sbjct: 150 VNSSGEPSKFGLEPDDVAGFLAALPVYSSLRVRGLMTLAANTSDEARVRECFNVMRRLRD 209
Query: 183 E-CKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 210 AALEAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGARATP 254
>gi|212639643|ref|YP_002316163.1| putative enzyme with a TIM-barrel fold [Anoxybacillus flavithermus
WK1]
gi|212561123|gb|ACJ34178.1| Predicted enzyme with a TIM-barrel fold [Anoxybacillus flavithermus
WK1]
Length = 233
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +LQ +Q I ++ R V +VAV+K V + + A+ G V E++
Sbjct: 7 MSVKQRLQTIQQHIADACEKTGRNASDVQIVAVTKYVSIARAKEAIDAGIVHLGESRTDG 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + FIG+LQS KV +I+ D + ++ R A ++ + +R +
Sbjct: 67 FLQKYE--TIGKEATWHFIGTLQSRKVKQIIDYVDYVHSLDRLSLAEEIN---KRANRMI 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ P F+ ++ V GLM + P + + F L
Sbjct: 122 KCFVQVNVSGEQSKHGLAPKDVLPFIETLSAFSRIEVVGLMTMAPYTDDEATIRRCFRTL 181
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ D+ +A+ GAT +R+G+ + GE
Sbjct: 182 RELKEQVQEKQLPHAPCTQLSMGMSNDYVIAVEEGATFLRLGTCLVGE 229
>gi|42782993|ref|NP_980240.1| hypothetical protein BCE_3945 [Bacillus cereus ATCC 10987]
gi|42738920|gb|AAS42848.1| conserved hypothetical protein TIGR00044 [Bacillus cereus ATCC
10987]
Length = 224
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNESIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P K +
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEKEIRRCFKTL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|134280136|ref|ZP_01766847.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
305]
gi|134248143|gb|EBA48226.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
305]
Length = 232
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 112/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P L + GLM IP +P +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + ++ + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFQQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|114571491|ref|YP_758171.1| hypothetical protein Mmar10_2952 [Maricaulis maris MCS10]
gi|114341953|gb|ABI67233.1| Protein of unknown function UPF0001 [Maricaulis maris MCS10]
Length = 225
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 98/218 (44%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + + I A A RP DS+ LVAVSK +++ AL+ GQ +F EN++QEA
Sbjct: 6 DIATRRDMLLTDIGKLAAEAGRPSDSIKLVAVSKRQSEERLDAALAAGQRVFGENRVQEA 65
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
W RK W D++LR IG LQSNK ++ V+LFDVIET+ R K A L EM +Q R
Sbjct: 66 MAHWGERRKVWSDLELRLIGPLQSNKAADAVALFDVIETLDRPKLADALRREMDRQGRRP 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Y+QVNTG E QK+G++ ++ F+ R ++ + GLMCIPP P HF LL+ +
Sbjct: 126 RLYVQVNTGAETQKAGVLVSELPAFLTRMRDEFGFEISGLMCIPPVEQPPGLHFALLARL 185
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + + LSMGM+ D+ +A+A GATSVRIG+G+FG+R
Sbjct: 186 AADNGIGHLSMGMSADYPVAVALGATSVRIGTGLFGDR 223
>gi|311693179|gb|ADP96052.1| alanine racemase domain protein [marine bacterium HP15]
Length = 206
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 71/204 (34%), Positives = 101/204 (49%), Gaps = 11/204 (5%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + +R A + GQ F EN LQEA +K L V FIG +QSNK +
Sbjct: 3 LLAVSKTRPPEDLREAFAAGQRAFGENYLQEALEKMEALADLEGVDWHFIGPIQSNKTRQ 62
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+ S F + +V R K A LS + L + +QVN E KSG ++ D V
Sbjct: 63 MASAFSWVHSVDRLKIARRLSEQRDPALPPLNICLQVNINEEESKSGCTLDELPDLVAEI 122
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----------LTKLSMGMTRDFE 198
+ +++ GLM IP ++A K L LS+GM+ D E
Sbjct: 123 GELPNISLRGLMAIPDPDQPEAGLRASFRKLANTLKQLRSDHPDAGPLDTLSIGMSGDLE 182
Query: 199 LAIASGATSVRIGSGIFGERPCQT 222
+AIA GAT VR+G+ +FG+RP ++
Sbjct: 183 VAIAEGATWVRVGTALFGKRPVKS 206
>gi|55820802|ref|YP_139244.1| hypothetical protein stu0736 [Streptococcus thermophilus LMG 18311]
gi|55822703|ref|YP_141144.1| hypothetical protein str0736 [Streptococcus thermophilus CNRZ1066]
gi|55736787|gb|AAV60429.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55738688|gb|AAV62329.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 227
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 1 MTIEENKNDVYQAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K++D+ IG+LQ KV ++++L D + K A + + +
Sbjct: 61 FLDKYQA-LKKYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G P + + + ++ + GLM + P N + + +E
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLNQIKNLDKICIVGLMTMAPIDANTQELDKIFAET 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM+RD+++AI +G+T VRIGS F
Sbjct: 177 NELRQSIQDKKLKNVPCDQLSMGMSRDYDIAIQNGSTFVRIGSAFF 222
>gi|206976698|ref|ZP_03237602.1| conserved hypothetical protein TIGR00044 [Bacillus cereus H3081.97]
gi|217961321|ref|YP_002339889.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH187]
gi|222097346|ref|YP_002531403.1| hypothetical protein BCQ_3686 [Bacillus cereus Q1]
gi|206745008|gb|EDZ56411.1| conserved hypothetical protein TIGR00044 [Bacillus cereus H3081.97]
gi|217066862|gb|ACJ81112.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH187]
gi|221241404|gb|ACM14114.1| conserved hypothetical protein [Bacillus cereus Q1]
Length = 224
Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + +
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKTL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|47094013|ref|ZP_00231745.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 4b H7858]
gi|254826213|ref|ZP_05231214.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254854032|ref|ZP_05243380.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254933459|ref|ZP_05266818.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254992794|ref|ZP_05274984.1| hypothetical protein LmonocytoFSL_06864 [Listeria monocytogenes FSL
J2-064]
gi|300765466|ref|ZP_07075447.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|47017618|gb|EAL08419.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 4b H7858]
gi|258607424|gb|EEW20032.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293585020|gb|EFF97052.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293595454|gb|EFG03215.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300513777|gb|EFK40843.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328466094|gb|EGF37264.1| hypothetical protein LM1816_05288 [Listeria monocytogenes 1816]
gi|328472680|gb|EGF43538.1| hypothetical protein LM220_03462 [Listeria monocytogenes 220]
gi|332312481|gb|EGJ25576.1| YggS family pyridoxal phosphate enzyme [Listeria monocytogenes str.
Scott A]
Length = 229
Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|226224637|ref|YP_002758744.1| hypothetical protein Lm4b_02052 [Listeria monocytogenes Clip81459]
gi|225877099|emb|CAS05811.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 229
Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKQV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|126439936|ref|YP_001060310.1| hypothetical protein BURPS668_3299 [Burkholderia pseudomallei 668]
gi|126451773|ref|YP_001067570.1| hypothetical protein BURPS1106A_3333 [Burkholderia pseudomallei
1106a]
gi|167920374|ref|ZP_02507465.1| hypothetical protein BpseBC_17639 [Burkholderia pseudomallei
BCC215]
gi|237813700|ref|YP_002898151.1| pyridoxal phosphate enzyme, YggS family [Burkholderia pseudomallei
MSHR346]
gi|242315201|ref|ZP_04814217.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106b]
gi|254180739|ref|ZP_04887337.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1655]
gi|126219429|gb|ABN82935.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
668]
gi|126225415|gb|ABN88955.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106a]
gi|184211278|gb|EDU08321.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1655]
gi|237506063|gb|ACQ98381.1| pyridoxal phosphate enzyme, YggS family [Burkholderia pseudomallei
MSHR346]
gi|242138440|gb|EES24842.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106b]
Length = 232
Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P L + GLM IP +P +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|116054125|ref|YP_788568.1| hypothetical protein PA14_05160 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115589346|gb|ABJ15361.1| putative PLP dependent enzyme [Pseudomonas aeruginosa UCBPP-PA14]
Length = 230
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 97/226 (42%), Gaps = 7/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +I +A A R +V L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + FIG +QSNK I F + +V R K A LS +
Sbjct: 61 EALGKQAELADL-PLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPL 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E KSG P +Q L + GLM IP +
Sbjct: 120 LNVCLQVNVSGEASKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFAR 179
Query: 180 IARECKLTKL-----SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L SMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 180 LRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225
>gi|313886741|ref|ZP_07820448.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923782|gb|EFR34584.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas
asaccharolytica PR426713P-I]
Length = 221
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + +I + V LVAVSK + +R A GQ +F EN+ QE
Sbjct: 2 IAERLAEIRSQI----------PEQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D+Q FIG+LQ NKV IV +IE+V E + + + R L +
Sbjct: 52 EKAPQ--LPEDIQWHFIGTLQRNKVKYIVPYVSLIESVDSEALLQEIVKQANRFDRQLRI 109
Query: 123 YIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL-- 176
+Q E KSG+ + ++ + ++ V GLM + + + +
Sbjct: 110 LLQYKIAQEESKSGLDHAELLALVDHYLATPEWRERITVCGLMGMATLTADKEQIRHEFD 169
Query: 177 --------LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E + +LSMGM+ D+ +A+ +G+T VRIG+ IFGER
Sbjct: 170 TLRALQTELRERYPQISWNELSMGMSSDWPIAVETGSTIVRIGTAIFGERQY 221
>gi|255532810|ref|YP_003093182.1| alanine racemase domain-containing protein [Pedobacter heparinus
DSM 2366]
gi|255345794|gb|ACU05120.1| alanine racemase domain protein [Pedobacter heparinus DSM 2366]
Length = 229
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +K ++ V L+AVSK ++ + A + GQ IF EN +QE
Sbjct: 1 MSIADNLLKYKSEL---------DPAGVKLIAVSKYQEADAVLEAYNAGQRIFGENIVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ IG LQ+NKV I +I++V K + ++ + K R +
Sbjct: 52 LVDKQAK--LPQDIEWHLIGHLQTNKVKYIAPFISLIQSVDSLKLLAEINKQAAKNKRVI 109
Query: 121 PVYIQVNTGYEIQKSG--IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G + + G+M I K
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAIELLRSEEFEAMKNVRITGVMGIASNHALEKQTSDEFH 169
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + ++SMGM+ D++LA+ G+T VRIGS IFG+R
Sbjct: 170 ELKVLFDGIKLSFFRKTAHFKEISMGMSGDYKLAVEQGSTMVRIGSSIFGKR 221
>gi|301311136|ref|ZP_07217064.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 20_3]
gi|300830710|gb|EFK61352.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 20_3]
Length = 222
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQSNKV +I +I ++ K + ++ + K R +
Sbjct: 51 L--SAKQKVLPEDIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V ++++ E K G+ P + K+ + + + GLM + +
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I ++SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 169 KIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGERKY 222
>gi|313112741|ref|ZP_07798389.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624940|gb|EFQ08247.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 240
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++K+ +A A R +V L A K ++ + + + +F EN +QE
Sbjct: 9 MQEAVAEIREKMAAAAREAGRDPAAVQLCAACKTRTAQTVAASAALPIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANFDA-GAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLNAIEKEAAKAGIVQNV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E K+G+ P + + + V+GLM IPP + + L+E+ +
Sbjct: 128 LLEVNIGGEESKTGVAPEALWPLLDAAAAQEHIRVKGLMAIPPVNDDDARNRRYLAEVYK 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE AI GAT VRIG+ I+GER
Sbjct: 188 LFVQAGERGYSNVSMETLSMGMSGDFENAIREGATLVRIGTAIYGERDYS 237
>gi|320533958|ref|ZP_08034522.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
171 str. F0337]
gi|320133835|gb|EFW26219.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
171 str. F0337]
Length = 248
Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats.
Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 7 NLDAVRARIDTAAERAGRDAAEIRLLPVSKTVPEERLRAAFAAGITQMGENKVQEAQRK- 65
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + IG LQ+NK + + D + + + A L + R L VY+Q
Sbjct: 66 SENLADLGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAEALDRRLQAAGRGLDVYVQ 125
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN+ E K G+ P+ DF+ L V GLM + + + F ++ +
Sbjct: 126 VNSSGEPSKFGLEPDDVADFLAALPAYSSLRVRGLMTLAANTSDEVRVRECFSIMRRLRD 185
Query: 183 E-CKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 186 AALQAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGTRATP 230
>gi|332525179|ref|ZP_08401354.1| alanine racemase domain protein [Rubrivivax benzoatilyticus JA2]
gi|332108463|gb|EGJ09687.1| alanine racemase domain protein [Rubrivivax benzoatilyticus JA2]
Length = 230
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+G+ LQ K++I +A A R SV+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 SIGSNLQEVKRRIAAAANAAGRDAQSVTLLAVSKTFPASAVRAAHGEGQRAFGENYVQEA 62
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + +++ IG LQSNK + FD + +V R K A L+ + L
Sbjct: 63 LAKIAELVDLRPELEWHLIGPLQSNKTRPVAEAFDWVHSVDRLKIAQRLAEQRPAWLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFYLLS 178
+ +QVN E KSG P ++ + GLM IP +P L+
Sbjct: 123 QLCLQVNVSGEASKSGCAPEDLPALAHAVAALPAERVRLRGLMAIPEPSEDPAAQRQPLA 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A L LSMGM+ D E A+A GAT VR+G+ IFG R
Sbjct: 183 RLRTMLAALNADGLALDTLSMGMSADLEAAVAEGATLVRVGTAIFGRR 230
>gi|319409377|emb|CBI83021.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 226
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 105/216 (48%), Positives = 149/216 (68%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ +Q I + R +SV L+AVSK V +++I L GQ++FAEN++QEA +K
Sbjct: 10 EAWKNLQQDIAATCKDYHRSLESVELIAVSKTVAAQQIVPLLQAGQLLFAENRVQEAAQK 69
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L+++++ ++L IG LQSNKV E V +FDVI+TV REK A LS EM KQ ++LP Y
Sbjct: 70 WPCLQEQFEAIKLHLIGPLQSNKVVEAVKIFDVIQTVDREKIAQKLSEEMNKQKKYLPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSGI P + DFV LC+ KY L++ GLM IPP NP P+F LL+++A++
Sbjct: 130 VQVNIGLEPQKSGIAPQEVADFVSLCKNKYGLDIIGLMAIPPVEENPGPYFALLAKLAKK 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++KLSMGM+ DF+ A+ GA +RIG+ +FG+RP
Sbjct: 190 AGVSKLSMGMSNDFKTALQFGANVLRIGTALFGQRP 225
>gi|307719387|ref|YP_003874919.1| pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta thermophila
DSM 6192]
gi|306533112|gb|ADN02646.1| predicted pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta
thermophila DSM 6192]
Length = 230
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 100/226 (44%), Gaps = 13/226 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ ++ + A R + V ++AV+K+ + I A G +F EN+LQEA
Sbjct: 5 EEHIRRILDEVRERCVKAGRRPEEVRVMAVTKLHGPEAIADAYRAGIRLFGENRLQEAAS 64
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K D +L IG LQ NK + V LF I +V R L + LPV
Sbjct: 65 KREAFPP--DAELHLIGHLQRNKARKAVELFSCIHSVDRIPLIEALEKAWGDRGGRLPVL 122
Query: 124 IQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---LSE 179
++VN E K G + + L G M + P + + + L E
Sbjct: 123 VEVNISGEETKYGFRTEEEVGQALERLAASPALEPRGFMTMAPYTDDERVIRAVFGGLRE 182
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A + L +LSMGM+ D+ +AI G+T +R+G+ +FGER
Sbjct: 183 LASRMQKAFPSLPLAELSMGMSNDYPIAIEEGSTILRLGTVLFGER 228
>gi|282897740|ref|ZP_06305739.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
gi|281197419|gb|EFA72316.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
Length = 224
Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + ++ SV L+AVSK V ++ +R A G F E+++QEA
Sbjct: 4 SIAERVTIIRAQL----------PPSVRLIAVSKQVSTQLMREAYRAGIRDFGESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L+ D+ FIG LQSNK + V LF I +V A L L
Sbjct: 54 ASKQIELQDLPDITWHFIGHLQSNKAKKAVELFSWIHSVDNLHIAERLHTIAQTTGASLC 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QV + QKSG Q + Q L ++GLM IPP + ++ +
Sbjct: 114 SCLQVKILPDPQKSGWTVPQLLTDLPFLSQYQNLQIQGLMTIPPWGLKEEKILHVFNHTY 173
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A+E + +LSMGM+ D+ LA+ +GAT VR+G+ +FG RP
Sbjct: 174 NLAQEIACQKWANIGMRELSMGMSGDYNLAVKAGATMVRLGTILFGNRP 222
>gi|168704574|ref|ZP_02736851.1| hypothetical protein GobsU_33869 [Gemmata obscuriglobus UQM 2246]
Length = 235
Score = 151 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 12/222 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K +I + A R D V+LVAV+K V + G E++ QE
Sbjct: 10 LSERFAAVKGRIAEACRRAGRTPDGVTLVAVTKTVSPAVAALVPPLGVRALGESRPQELW 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + IG LQ NK+ V L ++ +V + L+ K+ + V
Sbjct: 70 RKAEAVA---GADWHLIGHLQRNKIDRTVPLVSLVHSVDSARVLDALNAFGQKRGAPVAV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G P + ++V GLM + +P +P F L E
Sbjct: 127 LLEVNCSGEESKGGFSPAEVPALGDTLAGLGGVDVRGLMTMAAYSDDPASARPTFARLRE 186
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + L +LSMGM+ DFE+ + GAT VR+G+ +F
Sbjct: 187 LRDQLRARTGLALNELSMGMSNDFEIGVEEGATLVRVGTTLF 228
>gi|320161247|ref|YP_004174471.1| hypothetical protein ANT_18450 [Anaerolinea thermophila UNI-1]
gi|319995100|dbj|BAJ63871.1| hypothetical protein ANT_18450 [Anaerolinea thermophila UNI-1]
Length = 244
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 111/236 (47%), Gaps = 16/236 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++++ SA R ++ ++ V+K + ++ ++ G +F EN +EA
Sbjct: 8 IRERYLRVEEQVAQSAFEVGRDPKAIRILVVTKTQPLEVVKASIEAGITLFGENYPEEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + L+ + ++ IG LQS K +V F V+ET+ R + A L+ +R LP
Sbjct: 68 PKILALQSQPGIEWHMIGHLQSRKARIVVEHFSVMETIDRVEIAEKLNRFAQGANRVLPA 127
Query: 123 YIQVNTGYEIQKSGI------MPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPH 173
+++N E K G+ + L+++GLM +PP M +P+
Sbjct: 128 MLELNVSGEESKFGLPAWDDQTFTSMLGAIEKVVSLPNLSIKGLMTMPPLFEKMEESRPY 187
Query: 174 FYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L +I + +LSMG + DF +A+ GAT +RIG+ I G R +T
Sbjct: 188 FVKLRKIQDSLRKIFPQVCWDELSMGTSADFPVAVQEGATIIRIGTAILGPRRQKT 243
>gi|315186193|gb|EFU19955.1| alanine racemase domain protein [Spirochaeta thermophila DSM 6578]
Length = 230
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 13/226 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ ++ + A R + V ++AV+K+ + I A G +F EN+LQEA
Sbjct: 5 EEHIRRILDEVRERCVKAGRRPEEVRVMAVTKLHGPEAIADAYRAGIRLFGENRLQEAAS 64
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K D +L IG LQ NK + V LF I +V R L + LPV
Sbjct: 65 KREAFPP--DAELHLIGHLQRNKARKAVELFSCIHSVDRIPLIEALEKAWGDREGRLPVL 122
Query: 124 IQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---LSE 179
++VN E K G + + L V G M + P + + + L E
Sbjct: 123 VEVNLSGEETKYGFRTEEEVAQALERLAASPALEVRGFMTMAPYTDDERVIRAVFGGLRE 182
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A + L +LSMGM+ D+ +AI G+T +R+G+ +FGER
Sbjct: 183 LASRMQKAFPSLPLAELSMGMSNDYPIAIEEGSTILRLGTVLFGER 228
>gi|284007793|emb|CBA73650.1| amino acid racemase [Arsenophonus nasoniae]
Length = 203
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 73/202 (36%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ ++L+AVSK I+ A+ GQ F EN LQE +K R + D+ FIG+LQS
Sbjct: 2 PEDITLLAVSKTKSCDAIQEAIDAGQYQFGENYLQEGIEKIAYFRHKQDLIWHFIGALQS 61
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD T+ R K A L+ + L V IQ+N EI KSGI P +
Sbjct: 62 NKSRLVAEHFDWCHTIDRLKIAQRLNNQRPINKTPLNVLIQINISDEISKSGIAPEELDK 121
Query: 145 FVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIARECK-----LTKLSMGMTRD 196
L + GLM IP F + + + K + LSMGMT D
Sbjct: 122 LAAEIVLLPNLKLRGLMAIPAPNNELSQQISIFRSMENLFNQLKKQYPNIDTLSMGMTAD 181
Query: 197 FELAIASGATSVRIGSGIFGER 218
++AIA G+T VRIG+ IFG R
Sbjct: 182 LDIAIAWGSTLVRIGTAIFGSR 203
>gi|149280232|ref|ZP_01886355.1| hypothetical protein PBAL39_19280 [Pedobacter sp. BAL39]
gi|149229069|gb|EDM34465.1| hypothetical protein PBAL39_19280 [Pedobacter sp. BAL39]
Length = 229
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +K ++ + V L+AVSK +++ + A GQ +F EN +QE
Sbjct: 1 MSIADNLLKYKSEL---------DSEQVQLIAVSKFNEAEAVLEAYEAGQRVFGENIVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D++ IG LQ+NKV I +I++V K + + K R +
Sbjct: 52 LVDKQAQ--LPKDIEWHLIGHLQTNKVKYIAPFISLIQSVDSLKLLIEIDKQAAKHKRVI 109
Query: 121 PVYIQVNTGYEIQKSG--IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Q+ E K G + + GLM I + K +
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAVELLRSEEFAVLKNVRIVGLMGIASNNASEKQTNDEFT 169
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ +LSMGM+ D+++AI +G+T VRIGS IFG+R
Sbjct: 170 ELKVLFDGIKLSFFRKDDAFKELSMGMSGDYKIAIEAGSTMVRIGSSIFGKR 221
>gi|118602272|ref|YP_903487.1| hypothetical protein Rmag_0234 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567211|gb|ABL02016.1| Protein of unknown function UPF0001 [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 212
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 76/216 (35%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L+ +++I V+L+AVSK +++ A++ GQ FAEN LQEA
Sbjct: 2 IKDNLEKIQERINQV-----NHTQFVTLIAVSKTRSVDELQQAINTGQKHFAENYLQEAL 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K K ++ FIG +QSNK +I FD + +V R K A L+ + K L V
Sbjct: 57 IKI-NHLKGQNLIWHFIGPIQSNKTLKIAKNFDWVHSVDRLKIAKRLNEQRPKNLPNLKV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+N E KSG Q + V L + G MCIP + + + S I +
Sbjct: 116 LLQINIDNEPIKSGASIEQIDELVTHFESLKNLTLRGFMCIPNPSNSAQNFTRMTSIIKQ 175
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+RD E AI +GAT +RIG+ IFG+R
Sbjct: 176 YPNLDALSMGMSRDLESAITNGATFLRIGTDIFGKR 211
>gi|224369408|ref|YP_002603572.1| hypothetical protein HRM2_23130 [Desulfobacterium autotrophicum
HRM2]
gi|223692125|gb|ACN15408.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 230
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + N+L+ + I+++A A R D + LV VSK + K A+ G I EN +Q
Sbjct: 1 MNEITNRLKAIRNAIKDAAQSAGRNPDEILLVGVSKRQSAAKAMAAVHAGVTILGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K K+ + FIG LQ+NK V FD+I TV K A + + K +
Sbjct: 61 EAVEKI-ETLKDLEASWHFIGHLQTNKARFAVQHFDLIHTVDSIKLAREIDKQAQKIKKI 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ IQ+N E KSG + V + + GLM +PP +P+ E
Sbjct: 120 QKILIQINISQESSKSGARADDALALVRGVSLLKNVAITGLMGMPPFFDDPEQARPFFRE 179
Query: 180 IAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A+ + LSMGM+ DF+ AI G+T VRIG+ IFG R
Sbjct: 180 LAQIRSKIEDAKIPNVLMDHLSMGMSGDFKAAIEEGSTMVRIGTAIFGAR 229
>gi|288942593|ref|YP_003444833.1| alanine racemase domain-containing protein [Allochromatium vinosum
DSM 180]
gi|288897965|gb|ADC63801.1| alanine racemase domain protein [Allochromatium vinosum DSM 180]
Length = 232
Score = 151 bits (380), Expect = 9e-35, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 107/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ +I+ + A RP SV+L+AVSK ++ IR A + GQ F E+ LQEA
Sbjct: 5 DIAQHRNQVLARIQAAIEHAGRPAGSVALIAVSKKQPAEAIRAAHAAGQRAFGESYLQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D++ FIG +QSNK +I + FD + ++ A LS + L
Sbjct: 65 LDKQALLVDLSDIEWHFIGRIQSNKTRQIAAHFDWVHGLADLGHARRLSEQRPASRPPLN 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVN E K G+ P+ + CR+ L V GLM +P + +
Sbjct: 125 VCLQVNLSGETSKGGVAPDAVGALLEPCRELPGLRVRGLMTLPAPSEDETEQRRPFRALR 184
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+C L LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 185 ELRDRLATPDCPLEVLSMGMSDDMEAAILEGATQVRIGTAVFGVR 229
>gi|258511277|ref|YP_003184711.1| alanine racemase domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478003|gb|ACV58322.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 229
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 11/219 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ + ++E + + R V +VAV+K + + G AEN+ +
Sbjct: 6 VRQRVEEVRARVEAACRRSGRDPAGVRIVAVTKTASPDVLPALHAAGIRDAAENRW-QMA 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + + FIG+LQ+NKV +V F + ++ R + A LS E +++ + V
Sbjct: 65 RDKLAHPAASSLDWHFIGTLQTNKVKYVVPRFAWVHSLDRPELAHALSEEAVRRGVVVNV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------- 175
+QVN E QK G+ P + V L + L V GLM + P P+ +
Sbjct: 125 LVQVNISGEAQKHGVAPEDAEALVRLAHELPGLAVRGLMTMAPIAERPEDVRHVFAGLRA 184
Query: 176 LLSEIAREC---KLTKLSMGMTRDFELAIASGATSVRIG 211
L+ E+ L +LSMGM+ DFE+A+ GAT +RIG
Sbjct: 185 LMHELRSRLSLEALDQLSMGMSDDFEVAVEEGATMIRIG 223
>gi|194364708|ref|YP_002027318.1| alanine racemase domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194347512|gb|ACF50635.1| alanine racemase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 225
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 11/221 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +A A RP L+AVSK ++ + + GQ F EN +QEA K
Sbjct: 5 LPQILSNLHAAAEAAGRP--DPRLLAVSKTQPAEAVAALAAQGQHAFGENYVQEALAKMQ 62
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ D++ IG LQSNK + S FD +++V R K + L+ L V IQV
Sbjct: 63 ALQHL-DLEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPVARGPLNVLIQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P + L + GLM IP P + F + + +
Sbjct: 122 NIDDESSKHGCAPEDVDALAAAIAAEPSLRLRGLMAIPAPWPEAERRRDAFVRMRTLFQS 181
Query: 184 C-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 182 LVTQHAQIDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|116075031|ref|ZP_01472291.1| hypothetical protein RS9916_25764 [Synechococcus sp. RS9916]
gi|116067228|gb|EAU72982.1| hypothetical protein RS9916_25764 [Synechococcus sp. RS9916]
Length = 224
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK + +R GQV F E+++Q+A K L ++ FIG LQ+
Sbjct: 20 PEGVRLLAVSKGHPAAPVRELAELGQVDFGESRVQDALPKQEQLADLVQIRWHFIGRLQA 79
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F VI +V A + ++ ++QV + K G P D
Sbjct: 80 NKVRPVVRAFAVIHSVDSLALAQRMDRIAAEEGVIPEAFLQVKMRPDPAKGGWDPQALTD 139
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAI 201
+ + GLM + P + + L ++ +A L + SMGM+ D+ A
Sbjct: 140 AWPQLQALPHVRFTGLMTMAPLGCSQEQRSALFADCRTLADRLGLRECSMGMSGDWPEAA 199
Query: 202 ASGATSVRIGSGIFGERP 219
A+GAT VR+GSG+FG RP
Sbjct: 200 AAGATWVRVGSGLFGARP 217
>gi|78044191|ref|YP_360862.1| hypothetical protein CHY_2043 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996306|gb|ABB15205.1| conserved hypothetical protein TIGR00044 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 224
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 20/232 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + KLQ K++I RP V ++ V+K VD ++I+ A G F ENK+QE
Sbjct: 1 MEISQKLQEVKREIAKI-----RPGSKVKILGVTKTVDVERIKEASKAGVEAFGENKVQE 55
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ FIG LQ+NK+++I+ +I ++ R A ++ + +
Sbjct: 56 FL---EKYEKLPNLEWHFIGHLQTNKINKILGKVVLIHSLDRYNLAEEINKRAYRLGINV 112
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
PV ++VN E K G+MP + +DF L V GLM + P + NP +P F
Sbjct: 113 PVLLEVNMAKEETKFGLMPEEVEDFYFEVRENFKNLEVSGLMTVAPYVENPEEVRPVFRA 172
Query: 177 LSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + K LSMGM+ D+++A+ GA +R+G+ +FGER
Sbjct: 173 MRELFLKLKAKDPENDKFQYLSMGMSNDYKVAVEEGANIIRLGTLLFGERKY 224
>gi|189485622|ref|YP_001956563.1| hypothetical protein TGRD_619 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287581|dbj|BAG14102.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 231
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ K + ++ + V L+AV+K + I AL C E+K++EA
Sbjct: 3 NIHRNIEFIKNTVNSAKNTS----VVVELIAVTKTFPYQCILEALKCEIKHIGESKIKEA 58
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + FIG LQSNKV + V FD+I ++ K A +SL +
Sbjct: 59 LPKFEQLGSSLVGITKHFIGHLQSNKVKKAVENFDLIHSLDSVKLAGSISLYAANIDKLQ 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
I+V EI K+G+ PN +DF C + ++GLM I P NP+ +
Sbjct: 119 NCLIEVKVSQEITKTGVNPNYVEDFYKQCLSIPNILIKGLMVIAPYSDNPEDSRPYFKQV 178
Query: 180 --IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D+++A+ GAT +RIGS IFG+R
Sbjct: 179 YNLFENIRKSYGSSEFNILSMGMSDDYKIAVEEGATMIRIGSAIFGKRNY 228
>gi|111018096|ref|YP_701068.1| hypothetical protein RHA1_ro01083 [Rhodococcus jostii RHA1]
gi|110817626|gb|ABG92910.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 241
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 18/237 (7%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS + L + +++ + A R VSL+ V+K R+ G F E+
Sbjct: 1 MSRVGEIEAALGTVRARLDAACRDAGRDPADVSLLPVTKFFPESDARILYDLGCREFGES 60
Query: 57 KLQEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TAS 107
+ QEA K R + V+ IG LQ NK + I +V E+ A+
Sbjct: 61 REQEATAKIAEFRTVVTDSSVRWHMIGHLQRNKAKAVAHWAYAIHSVDSERLVGALGRAA 120
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
+LE ++ L V +QV+ + Q+ G + + L GLM +PP
Sbjct: 121 TTALEAGERPEPLRVLLQVSLDGDPQRGGAAIADLERLAAQVQSSPGLEYRGLMAVPPID 180
Query: 168 GNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+P F L +I T LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 181 ADPDAAFEELQKIHARLRRDHPDATDLSAGMTNDLEHAVRHGSTCVRVGTALLGSRP 237
>gi|256827363|ref|YP_003151322.1| pyridoxal phosphate enzyme, YggS family [Cryptobacterium curtum DSM
15641]
gi|256583506|gb|ACU94640.1| pyridoxal phosphate enzyme, YggS family [Cryptobacterium curtum DSM
15641]
Length = 230
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + ++ AI A R +V L+AVSK V + A+ G F EN+ +
Sbjct: 1 MTIAERYRALADEVAREAIRAGRDSQAVKLIAVSKTVGPDAVAEAIHAGAQAFGENRPDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + + FIG++QS ++ +IV +I +V E + + +
Sbjct: 61 I---MDKQPRFPEAEWHFIGNIQSRRIKDIVPHATLIHSVFEESHLARIDHAAAAIDKVQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
+ I+VN E K G P+ + CR + V GLM + P + F L+
Sbjct: 118 DILIEVNVSGEASKGGAAPDDVASLIDACRNLSHIRVRGLMTMAPQGDLQVAEETFVHLA 177
Query: 179 EIAREC----------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L++LSMGM+ D+ AI GAT VRIG IF
Sbjct: 178 ALKNKLVASLDADMAAHLSELSMGMSEDWRCAIKQGATMVRIGRAIF 224
>gi|320155279|ref|YP_004187658.1| hypothetical protein VVM_00844 [Vibrio vulnificus MO6-24/O]
gi|319930591|gb|ADV85455.1| hypothetical protein YggS proline synthase co-transcribed bacterial
PROSC-like protein [Vibrio vulnificus MO6-24/O]
Length = 208
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE---AKKKWIPLRKEWDVQLRFIGSLQSN 85
L+AVSK + I A GQ F EN +QE + + E ++ FIG +QSN
Sbjct: 2 QLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEWHFIGPIQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F + T+ R+K A L+ + + L V IQVNT E KSG+ +
Sbjct: 62 KSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFAL 121
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDF 197
L L + GLM IP + + +A R + LSMGM+ D
Sbjct: 122 AELISTLPNLTLRGLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDM 181
Query: 198 ELAIASGATSVRIGSGIFGERPCQ 221
+ AI SG+T VRIG+ IFG R
Sbjct: 182 DAAIESGSTMVRIGTAIFGHRDYS 205
>gi|168186162|ref|ZP_02620797.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295770|gb|EDS77903.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 223
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F++++ +V+L+AVSK +++ A C F ENK+QE
Sbjct: 1 MSIKENVIKFQKEL----------PKNVTLLAVSKTRTLEELEEAYKCNIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV+ IG LQ+NKV IV +I ++ K + +
Sbjct: 51 LTYKFDNFHK--DVRWHLIGHLQTNKVKYIVGKVYLIHSLDNVKLLKEIEKRYSSANEIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----------AMGNP 170
V IQ+N G + KSG++ +D + C + + V+GLM + P +
Sbjct: 109 NVLIQINIGRDSNKSGVLLENLQDLIDECEKCKNVKVKGLMTVIPKGNHDTNREYFIEMK 168
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K + +L +++ K+ +SMGMT D+E A+ G+ VRIG GIFG+R
Sbjct: 169 KTYDFLSNKLYNNVKMEFISMGMTGDYEEALEEGSNIVRIGEGIFGKRLYN 219
>gi|303230544|ref|ZP_07317298.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514785|gb|EFL56773.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-049-V-Sch6]
Length = 228
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHKIQQRMADAMASVGRT-DTALLVAVTKNHPVTAVEEVARLGCTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + IG LQ NKV + V FD+I +V +K + K + +
Sbjct: 61 EKQMLYTGP-KLVWHLIGHLQVNKVRQAVPKFDLIHSVDSKKLLDEIEKVAAKHDKVQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---E 179
+QVN E KSG+ D + + V+GLMC+ P NP+ +
Sbjct: 120 LLQVNVAREASKSGMSVEDFPDIRDYAKTLPHVRVKGLMCMAPFFENPEDARPIFRVAHA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LYEDMKGYFPDGDIQYLSMGMTHDFEIALQEGANIVRVGTAIFGERVYN 228
>gi|303229239|ref|ZP_07316035.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-134-V-Col7a]
gi|302516094|gb|EFL58040.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-134-V-Col7a]
Length = 228
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHKIQQRMADAMASVGRT-DTALLVAVTKNHPVTAVEEVARLGCTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + IG LQ NKV + V +FD+I +V +K + K + +
Sbjct: 61 EKQMLYTGP-KLVWHLIGHLQVNKVRQAVPMFDLIHSVDSKKLLDEIEKVAAKHDKVQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---E 179
+QVN E KSG+ D + + V+GLMC+ P NP+ +
Sbjct: 120 LLQVNVAREASKSGMSVEDFPDIRDYAKTLPHVRVKGLMCMAPFFENPEDARPIFRVAHA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LYEDMKGYFPDGDIQYLSMGMTHDFEIALQEGANIVRVGTAIFGERVYN 228
>gi|126304071|ref|XP_001381845.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial), [Monodelphis domestica]
Length = 394
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L K++++ SA R ++ LVAVSK + + A + GQ F EN +QE +K
Sbjct: 136 LLAVKERVQQSAARRSRDLPAIQPRLVAVSKTKPADMVIEAYAHGQRSFGENYVQELLEK 195
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S + S
Sbjct: 196 ASNTKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLYMLETVDSVKLADKVNNSWQKRGSS 255
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 256 ERLKVMVQINTSGEESKHGLPPSETMATVQHINAKCPNLEFVGLMTIGSFGHDLSKGPNP 315
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E+ + L +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 316 DFQALLCLRKELCEKLGLPIDQVELSMGMSMDFQHAIEMGSTNVRIGSTIFGERDYS 372
>gi|229086465|ref|ZP_04218637.1| hypothetical protein bcere0022_30490 [Bacillus cereus Rock3-44]
gi|228696782|gb|EEL49595.1| hypothetical protein bcere0022_30490 [Bacillus cereus Rock3-44]
Length = 222
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++I+ + A+R + + LVAV+K V +K + G EN+ +
Sbjct: 1 MQENLAFVNEEIKKACERAERLVEEIKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + ++ +
Sbjct: 61 EKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQK---RATKQIRC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QV T E K GI +T F+ ++ ++ V GLM + P G + +
Sbjct: 116 FVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTGKEAEIRHCFKTLRS 175
Query: 182 -----RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|317480381|ref|ZP_07939481.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 4_1_36]
gi|316903459|gb|EFV25313.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 4_1_36]
Length = 221
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PEKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D++ FIG LQ+NK+ IV +I + K + + + K + +
Sbjct: 52 AKCES--LPKDIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLAEVDKQAAKAGKTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDF-----VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+Q++ E K G ++ ++ + + G+ K F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSL 169
Query: 178 SEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S E K +LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 170 SSFFNEVKAKWFADAESFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNY 221
>gi|260063098|ref|YP_003196178.1| hypothetical protein RB2501_15954 [Robiginitalea biformata
HTCC2501]
gi|88784667|gb|EAR15837.1| hypothetical protein RB2501_15954 [Robiginitalea biformata
HTCC2501]
Length = 219
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 22/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L K+ + D V+LVAVSK D I A G +F EN++QE
Sbjct: 3 MEIAKRLAELKESL----------PDGVTLVAVSKTKDDSAIMEAYEAGHRVFGENRVQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ R D+Q IG LQ NKV + +I+ V + + + R +
Sbjct: 53 LTAKYE--RLPKDIQWHMIGHLQRNKVKYLAPFVSLIQGVDSPRLLREIDKRGRQAGRVI 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+QV+ E K G + ++ R+ + V G+M + N +
Sbjct: 111 DCLLQVHIAEEDSKFGFDREELEELLAGGSLREMEHVRVRGMMGMATFTDNTAQVRREFA 170
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + LSMGM+ D+ +A+ G+ VRIGS IFG R
Sbjct: 171 SLKALYDRWLEADPRADILSMGMSGDYRIALEEGSNMVRIGSSIFGARD 219
>gi|301123513|ref|XP_002909483.1| proline synthetase co-transcribed bacterial protein [Phytophthora
infestans T30-4]
gi|262100245|gb|EEY58297.1| proline synthetase co-transcribed bacterial protein [Phytophthora
infestans T30-4]
Length = 234
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 16/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + K+ + K +LVAVSK + ++ A Q F EN +QE
Sbjct: 1 MAVAKNLLAVRAKVAGAVAKTT-WKQQCTLVAVSKTKPLEDLQEAYEADQRHFGENYIQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----KQ 116
+ D++ +IG +QSNK +V + V + + + +
Sbjct: 60 LTQ--KAPLLPADIKWHYIGHVQSNKAKPLVRDVPNLFVVETVDSIKIANALNKASGEFR 117
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V +QVNT E QKSGI + + + LN+ GLM I F
Sbjct: 118 TEKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEHLNLTGLMTIGRYGDTTSECFD 177
Query: 176 LL----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L ++A T+ LSMGM+ DFELAI+ G+T VR+GS IFG R
Sbjct: 178 RLVACRKKVAEAIGKTETELALSMGMSGDFELAISCGSTHVRVGSTIFGARNY 230
>gi|238018688|ref|ZP_04599114.1| hypothetical protein VEIDISOL_00532 [Veillonella dispar ATCC 17748]
gi|237865159|gb|EEP66449.1| hypothetical protein VEIDISOL_00532 [Veillonella dispar ATCC 17748]
Length = 239
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 13 IEESLHAIQQRMADAMASVGR-VDTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAK 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + + IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 72 EKQLTYKGPA-LTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVATKHDKVQDV 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--------- 173
+QVN E K+G+ + + + + V GLMC+ P +P+
Sbjct: 131 LLQVNVAREASKTGMSVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPEEARPIFRVANA 190
Query: 174 -FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + E ++ LSMGMT DFE+A+ GA VR+G+ IFG R
Sbjct: 191 LYEDMKGYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGGRVY 238
>gi|326333487|ref|ZP_08199729.1| pyridoxal phosphate enzyme, YggS family [Nocardioidaceae bacterium
Broad-1]
gi|325948732|gb|EGD40830.1| pyridoxal phosphate enzyme, YggS family [Nocardioidaceae bacterium
Broad-1]
Length = 233
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I +A A RP + V LV V+K + +R+ G EN+ QEA
Sbjct: 8 IAAGLAETRERIAVAAKAAGRPAEDVHLVVVTKFFPASDVRILAGLGVTDVGENRHQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ +IG LQSNK + + S DV+E+V R S LS ++ + L V
Sbjct: 68 AKAAECADL-GLRWHYIGGLQSNKAAAVASYADVVESVDRSSLLSRLSRGAGERGQILDV 126
Query: 123 YIQVNTGYEIQ--KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QV+ + ++G P +D + L + GLM + P +P P F L+ I
Sbjct: 127 LLQVSLDPPGREGRAGADPGDVRDLAAEVMETDGLRLRGLMAVAPLGEDPDPAFVRLARI 186
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + T LS GM+ D E AIA GAT VR+GS + GERP
Sbjct: 187 REDFLVEYPEATVLSAGMSGDLEQAIAHGATHVRVGSAVLGERPT 231
>gi|213965663|ref|ZP_03393856.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium amycolatum
SK46]
gi|213951614|gb|EEB63003.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium amycolatum
SK46]
Length = 240
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/236 (31%), Positives = 106/236 (44%), Gaps = 19/236 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL----SCGQVIFAENKLQE 60
+ + +I+++ A R V L+ VSK V + + + G AEN++QE
Sbjct: 4 ENYRKVRSEIDDACRRAGRQPSEVRLLPVSKTVPVDALVESWPELAAAGCAGLAENRVQE 63
Query: 61 AKKKWIPLRKEWDVQLRFI---GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A K R + + + G LQ+NK +VS D + + R K A L +
Sbjct: 64 AVAKTEAFRDAFGDKAPHMAIIGPLQTNKAGHLVSCADEFQALDRPKVAGALQRRLADSE 123
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGN-PKPH 173
R L V IQVN E QKSG+ P+ +FV + L + G M I +
Sbjct: 124 RTLDVLIQVNASREPQKSGLAPSHAAEFVRMFGPDGEYPNLRLRGFMTIAAQNDPNVRET 183
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E+ L +LSMGM+ D+ AIA GAT+VR+G IFGER Q
Sbjct: 184 FAELRELRDSLLGDLPEGVSLDELSMGMSGDYHEAIAEGATTVRVGRAIFGERSYQ 239
>gi|257063615|ref|YP_003143287.1| pyridoxal phosphate enzyme, YggS family [Slackia heliotrinireducens
DSM 20476]
gi|256791268|gb|ACV21938.1| pyridoxal phosphate enzyme, YggS family [Slackia heliotrinireducens
DSM 20476]
Length = 234
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ K ++E++ A RP D+V ++ VSK V + A G F EN+ E
Sbjct: 1 MTLESRYGTIKGRVESACEQAGRPADAVRIIGVSKTVGLDSVAEATKAGIHDFGENRPDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIG++QS ++S +V +I ++ +E A+ + ++
Sbjct: 61 LVRKHDAFP---DERWHFIGNIQSRQLSNVVGRAYLIHSLYQESHAAKIDRLAAEKGIVQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V I+VN G E K G+ P++ K+ V C + V+GLM + P F +L+
Sbjct: 118 DVLIEVNDG-ETNKQGVDPDKVKEMVEFCEGLEHVRVKGLMIMAPIGSAEEASKTFAMLA 176
Query: 179 EIAREC-----------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E +L +LSMGM+ D+ AI GAT VRIG IF
Sbjct: 177 RVRDEVVESFSQQGKDVQLGELSMGMSDDYLEAIPLGATMVRIGRAIF 224
>gi|312899016|ref|ZP_07758403.1| pyridoxal phosphate enzyme, YggS family [Megasphaera
micronuciformis F0359]
gi|310619923|gb|EFQ03496.1| pyridoxal phosphate enzyme, YggS family [Megasphaera
micronuciformis F0359]
Length = 215
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 14/218 (6%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
+ ++ A R D+V+LVAV+K + + A SCG EN+++E K
Sbjct: 1 MASAMARAGR-VDTVTLVAVTKNHPVEDMIEAASCGVTDVGENRVKEGTDKQKAFPDN-K 58
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
++ IG LQ+NKV + V+ FD+I +V + + + E K + + +QVN E
Sbjct: 59 LKWHLIGHLQTNKVKQAVAHFDLIHSVDSQHLLAAIDKEAEKIGKVQDILLQVNVAREES 118
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC--------- 184
K+G + L ++ + V G MC+ P N + + IA+
Sbjct: 119 KTGAAVEEFPKLCCLAKEAQHVRVCGFMCMAPNFENVEETRPVFR-IAKALYDDMKGKFP 177
Query: 185 --KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT DFE+AI GA VR+G+ IFG R
Sbjct: 178 DGQVRYLSMGMTHDFEIAIEEGANIVRVGTAIFGPRNY 215
>gi|255994435|ref|ZP_05427570.1| pyridoxal phosphate enzyme, YggS family [Eubacterium saphenum ATCC
49989]
gi|255993148|gb|EEU03237.1| pyridoxal phosphate enzyme, YggS family [Eubacterium saphenum ATCC
49989]
Length = 230
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 15/231 (6%)
Query: 2 SLGNKLQVFKQKIENS---AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L+ KI+ + A V L V+K +IR A+ G++ ENK+
Sbjct: 3 DIVENLKEVHGKIDRAYDRAKEFHNENGEVMLCTVTKTRSISEIREAVDAGEIHLGENKV 62
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K+ V IG LQ+NKV I+ +I ++ K A + +
Sbjct: 63 QEITDKFE---HFNGVNFHMIGHLQTNKVKYIIDKVFLIHSLDSIKLAKEIDKRAKQHGI 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA---MGNPKPHF 174
V +QVN E K G+ P++ +F+ + V+GLM + P + + +F
Sbjct: 120 TANVLVQVNISNEESKYGLSPDEVDEFIESVTADYDNILVKGLMSMAPIVKKSEDAREYF 179
Query: 175 YLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+E+AI GA VR+G+ IFG R
Sbjct: 180 EKTKKMFDNYRQKYSQFEYLSMGMSGDYEVAIECGANIVRVGTSIFGPRSY 230
>gi|255027924|ref|ZP_05299910.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J2-003]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|229019103|ref|ZP_04175938.1| hypothetical protein bcere0030_36140 [Bacillus cereus AH1273]
gi|229025347|ref|ZP_04181765.1| hypothetical protein bcere0029_36480 [Bacillus cereus AH1272]
gi|228735932|gb|EEL86509.1| hypothetical protein bcere0029_36480 [Bacillus cereus AH1272]
gi|228742203|gb|EEL92368.1| hypothetical protein bcere0030_36140 [Bacillus cereus AH1273]
Length = 224
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLAGVNEAIKESCARAGRSMKDIKLVAVTKTVGIEKTSEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FSQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQ---KRADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|163846505|ref|YP_001634549.1| alanine racemase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524290|ref|YP_002568761.1| alanine racemase domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163667794|gb|ABY34160.1| alanine racemase domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222448169|gb|ACM52435.1| alanine racemase domain protein [Chloroflexus sp. Y-400-fl]
Length = 246
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 77/241 (31%), Positives = 111/241 (46%), Gaps = 23/241 (9%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L +L + +++I +A A R D V L+AVSK + + A++ G EN++
Sbjct: 1 MTEALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRV 60
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEA+ K + + IG LQ NK V LFD+I +V + A L ++
Sbjct: 61 QEAQHKIAALHSLQPRPRWHLIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERD 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK----------YQLNVEGLMCIPPAM 167
R LP+ +QVN E K G + L + GLM I P +
Sbjct: 121 RRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVEAILQLPALEIRGLMTIAPIV 180
Query: 168 GNP---KPHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+P +P+F L E+ + +LSMGM+ D AIA GAT VRIG IFGE
Sbjct: 181 EHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGE 240
Query: 218 R 218
R
Sbjct: 241 R 241
>gi|47097620|ref|ZP_00235144.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 1/2a F6854]
gi|254899271|ref|ZP_05259195.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes J0161]
gi|254912590|ref|ZP_05262602.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936916|ref|ZP_05268613.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|47014007|gb|EAL05016.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 1/2a F6854]
gi|258609516|gb|EEW22124.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293590581|gb|EFF98915.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|114329007|ref|YP_746164.1| hypothetical protein GbCGDNIH1_2343 [Granulibacter bethesdensis
CGDNIH1]
gi|114317181|gb|ABI63241.1| hypothetical exported protein [Granulibacter bethesdensis CGDNIH1]
Length = 236
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 88/199 (44%), Positives = 119/199 (59%), Gaps = 1/199 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL-RFIGSLQ 83
+V+LVAVSK + A GQ +F ENK+QEA K++PLR E D IG LQ
Sbjct: 23 PQTVTLVAVSKTHGPDAVAAARRAGQSVFGENKVQEALTKFLPLRDEADPPTLHLIGGLQ 82
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK E V + DVIE++ R + A L+L K+ R + +QVN G E QKSGI +
Sbjct: 83 TNKAREAVRVADVIESLDRPRLADALALAAEKEKRLPRLLVQVNVGDEPQKSGIPTREAD 142
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ +CR ++ + G+M IPPA +P P+F L+ A L +SMGM+ DFE AIA+
Sbjct: 143 SFIEMCRHRFGDALCGVMGIPPADVDPDPYFLWLAAAAARHGLPVISMGMSGDFEQAIAN 202
Query: 204 GATSVRIGSGIFGERPCQT 222
GAT VRIG+ IFG RP +
Sbjct: 203 GATHVRIGTAIFGARPRPS 221
>gi|94268049|ref|ZP_01291070.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
gi|93451754|gb|EAT02518.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K +I +A A R +V LVAVSK V ++I A++ GQ +F E+ LQEA+
Sbjct: 4 IAQNLAAIKARIAAAARRAGRDPQTVRLVAVSKKVAPERIARAVAGGQRLFGESYLQEAE 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + E + FIG LQSNK + F ++E+V R K A L+ R LPV
Sbjct: 64 AKMARVDPEGRLHWHFIGHLQSNKAKAAATHFAMVESVDRLKLAGRLAHYAAAAGRLLPV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E +K+G+ P +T+ + + L V GLM +PP + ++ +
Sbjct: 124 LVQVNIAGEARKAGVAPAETRTLLQELDKLPALRVMGLMTMPPWASTAEASRGHFRQLRQ 183
Query: 183 ------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DFE+A+ GAT VR+G+ IFG R
Sbjct: 184 LADAMAEAGLLGRHGPVELSMGMSGDFEVAVEEGATLVRVGTAIFGARD 232
>gi|160891909|ref|ZP_02072912.1| hypothetical protein BACUNI_04367 [Bacteroides uniformis ATCC 8492]
gi|156858387|gb|EDO51818.1| hypothetical protein BACUNI_04367 [Bacteroides uniformis ATCC 8492]
Length = 221
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PGKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ FIG LQ+NK+ IV +I + K + + + K + +
Sbjct: 52 AKYES--LPKDIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLAEVDKQAAKAGKTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDF-----VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+Q++ E K G ++ ++ + + G+ K F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSL 169
Query: 178 SEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S E K +LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 170 SSFFNEVKAKWFADAESFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNY 221
>gi|218289917|ref|ZP_03494107.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218240057|gb|EED07243.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 11/219 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ + ++E + + R V +VAV+K + + G EN+ Q A
Sbjct: 6 VRQRVEEIRAQVEAACRRSGRDPAGVRIVAVTKTASPDVLPALHAAGIRDAGENRWQIA- 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + FIG+LQ+NKV +V F I ++ R + A LS E +++ + V
Sbjct: 65 RDKLAHPAASGFHWHFIGTLQTNKVKYVVPRFAWIHSLDRPELAHALSEEAVRRGVVVNV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------- 175
+QVN E QK G+ P+ + + L R+ L+V GLM + P P+ Y
Sbjct: 125 LVQVNISGEAQKHGVAPDDAETLIRLARELPGLSVRGLMTMAPITERPEDVRYVFAGLRA 184
Query: 176 LLSEIARECK---LTKLSMGMTRDFELAIASGATSVRIG 211
L+ ++ L +LSMGM+ DFE+A+ GAT +RIG
Sbjct: 185 LMHDLRSRLSLETLDQLSMGMSDDFEVAVEEGATMIRIG 223
>gi|46908267|ref|YP_014656.1| hypothetical protein LMOf2365_2063 [Listeria monocytogenes serotype
4b str. F2365]
gi|46881538|gb|AAT04833.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
serotype 4b str. F2365]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITEFYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|262273740|ref|ZP_06051553.1| hypothetical protein VHA_000715 [Grimontia hollisae CIP 101886]
gi|262222155|gb|EEY73467.1| hypothetical protein VHA_000715 [Grimontia hollisae CIP 101886]
Length = 206
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/202 (35%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRFIGSLQSNKV 87
L+AVSK + I A+ GQ F EN +QE +K R + FIG +QSNK
Sbjct: 2 QLLAVSKTKPIEAIADAVEAGQTRFGENYVQEGVEKITHFRDIHPHLEWHFIGPIQSNKT 61
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I FD + ++ R K A LS + L V IQVNT E KSGI + K
Sbjct: 62 RLIAEHFDWVHSIDRSKVAHRLSEQRPADLPPLQVLIQVNTSGEASKSGIGFDDVKALAE 121
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFEL 199
L + GLMCIP + + + + A LSMGM+ D +
Sbjct: 122 EIDALPNLTLRGLMCIPQPEEDHQKQLDAFAPLSALFETMKASRPDFDTLSMGMSGDMDA 181
Query: 200 AIASGATSVRIGSGIFGERPCQ 221
AIASG+T VRIG+ IFG R
Sbjct: 182 AIASGSTMVRIGTAIFGARDYS 203
>gi|198414039|ref|XP_002124883.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Ciona intestinalis]
Length = 250
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 101/239 (42%), Gaps = 19/239 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS--LVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+ L + I+++ + +V LVAVSK I+ A GQ F EN L+
Sbjct: 7 DIAANLAGIRTGIDSAVQKRPQTVPTVQPILVAVSKTKPLSLIKQAYDAGQRHFGENYLK 66
Query: 60 EAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVS-REKTASLLSLEMIK 115
E K D++ +IG+ Q S ++ + ++ + + K
Sbjct: 67 ELVVKSNSPDMAELCPDIKWHYIGTFQKKMASVLMRVSNLHMLETLNGAKEADAVNSRWK 126
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPA----MGNP 170
+ L V +QVNT E KSG+ ++ + + R L + GLM I P
Sbjct: 127 STEPLQVLVQVNTSGEESKSGVTASECTELAGHIHRNCSNLKLAGLMTIGSFGYDCTQGP 186
Query: 171 KPHFYLLSEIAR----ECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L+E + E + + LSMGM+ D+ AI G+T VR+G+ IFG R
Sbjct: 187 NPDFTKLAECRKTVCKELGIPEKDLQLSMGMSHDYTHAIEMGSTMVRVGTAIFGARDYN 245
>gi|16804070|ref|NP_465555.1| hypothetical protein lmo2031 [Listeria monocytogenes EGD-e]
gi|16411501|emb|CAD00109.1| lmo2031 [Listeria monocytogenes EGD-e]
Length = 229
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +RIG +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRIGRAL 221
>gi|94265278|ref|ZP_01289036.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
gi|93454212|gb|EAT04530.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
Length = 232
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K +I +A A R +V LVAVSK V ++I A++ GQ +F E+ LQEA+
Sbjct: 4 IAQNLAAIKARIAAAARRAGRDPQTVRLVAVSKKVAPERIARAVAGGQRLFGESYLQEAE 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + E + FIG LQSNK + F ++E+V R K A L+ R LPV
Sbjct: 64 AKMARVDPEGRLHWHFIGHLQSNKAKAAATRFAMVESVDRLKLADRLAHHAAAAGRLLPV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E +K+G+ P +T+ + + L V GLM +PP + ++ +
Sbjct: 124 LVQVNIAGEARKAGVAPAETRALLQELDKLPALRVMGLMTMPPWASTAEASRGHFRQLRQ 183
Query: 183 ------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DFE+A+ GAT VR+G+ IFG R
Sbjct: 184 LADAMAEAGLLGRHGPVELSMGMSGDFEVAVEEGATLVRVGTAIFGARD 232
>gi|308069869|ref|YP_003871474.1| hypothetical protein PPE_03116 [Paenibacillus polymyxa E681]
gi|305859148|gb|ADM70936.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 233
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +++ ++E + + R +D V+++AV+K V + + L EN+ Q+
Sbjct: 1 MSLEERIKEVNARVEAACARSGRSRDEVNVIAVTKYVSAATMTSVLDSDLEHVGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AADKWSKLGDR--GTWHFIGHLQTNKVKDVIGKFKFIHSLDRLSLAQELDKKAAALGLRV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ F+ R+ ++V GLM + P +P +P F L
Sbjct: 119 KAFVQVNISGETSKYGLSSEAVVPFLEQIRELEHVDVIGLMTMAPHEEDPEKTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + LSMGM+ DFE+A+ GAT +R+GS + G
Sbjct: 179 RELRDRLNGQALTREPIVHLSMGMSNDFEVAVEEGATWLRLGSVLVG 225
>gi|270296423|ref|ZP_06202623.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. D20]
gi|270273827|gb|EFA19689.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. D20]
Length = 221
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PEKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ FIG LQ+NK+ IV +I + K + ++ + K + +
Sbjct: 52 AKYKS--LPKDIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLAEVNKQAAKAEKTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDF-----VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+Q++ E K G ++ ++ + + G+ K F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSL 169
Query: 178 SEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S E K +LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 170 SSFFNEVKAKWFADAESFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNY 221
>gi|315283070|ref|ZP_07871341.1| pyridoxal phosphate enzyme, YggS family [Listeria marthii FSL
S4-120]
gi|313613278|gb|EFR87151.1| pyridoxal phosphate enzyme, YggS family [Listeria marthii FSL
S4-120]
Length = 229
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +IE++ + R V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLEKVTAQIEHACEESNREPKDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTVALADKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKSV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEADFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|254827081|ref|ZP_05231768.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258599464|gb|EEW12789.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
Length = 229
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|224501168|ref|ZP_03669475.1| hypothetical protein LmonFR_01385 [Listeria monocytogenes FSL
R2-561]
gi|284802478|ref|YP_003414343.1| hypothetical protein LM5578_2234 [Listeria monocytogenes 08-5578]
gi|284995620|ref|YP_003417388.1| hypothetical protein LM5923_2185 [Listeria monocytogenes 08-5923]
gi|284058040|gb|ADB68981.1| hypothetical protein LM5578_2234 [Listeria monocytogenes 08-5578]
gi|284061087|gb|ADB72026.1| hypothetical protein LM5923_2185 [Listeria monocytogenes 08-5923]
Length = 229
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|160942923|ref|ZP_02090162.1| hypothetical protein FAEPRAM212_00400 [Faecalibacterium prausnitzii
M21/2]
gi|158445824|gb|EDP22827.1| hypothetical protein FAEPRAM212_00400 [Faecalibacterium prausnitzii
M21/2]
gi|295103910|emb|CBL01454.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii SL3/3]
Length = 239
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++K+ +A A R +V L A K ++ I + + +F EN +QE
Sbjct: 9 MRQAVAEIREKMAAAAREAGRDPAAVQLCAACKTRTAQTIAASAALPIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ FIG LQ+NK+ +++ +I++V E + E K +
Sbjct: 69 ANYDA-GAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLLAIEKEAAKAGIVQDI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E K+G P + + + V+GLM IPP + + L+++ +
Sbjct: 128 LLEVNIGGEESKTGAAPELLWPLLDTAAAQQHIRVKGLMAIPPVNDDDAQNRRYLAQVYQ 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGM+ DFE AI GAT VRIG+ I+G R
Sbjct: 188 LFVRAGERGYHNVEMQTLSMGMSGDFENAIREGATLVRIGTAIYGARDYS 237
>gi|312278127|gb|ADQ62784.1| Predicted enzyme with a TIM-barrel fold [Streptococcus thermophilus
ND03]
Length = 227
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 1 MTIEENKNDVYQAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K++D+ IGSLQ KV ++++L D + K A + + +
Sbjct: 61 FLDKYQA-LKKYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAEEIQ---KRADHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G P + + + ++ + GLM + P N + + +E
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLNQIKNLDKICIVGLMTMAPIDANTQELDKIFAET 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM+RD+++AI +G+T VRIGS F
Sbjct: 177 NELRQSIQDKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFF 222
>gi|322372689|ref|ZP_08047225.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C150]
gi|321277731|gb|EFX54800.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C150]
Length = 227
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R D V+++AV+K V S + G AEN++ +
Sbjct: 1 MTIEENKNNVYQAVKAACEKANRSSDEVNIIAVTKYVSSDIAEELVKTGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ +D+ IG+LQ KV ++++L D + K A + + + +
Sbjct: 61 FLDKYQA-LNNYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RANHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G P + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNVSGEESKHGFSPEELDTVLDQIKNLDNICIVGLMTMAPIDADNQELDEIFSQT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E+ + + +LSMGM+RDF+ AI +G+T VRIGS F
Sbjct: 177 NELRKSIQEKKIKNVPCDQLSMGMSRDFDEAIQNGSTFVRIGSAFF 222
>gi|320530721|ref|ZP_08031765.1| pyridoxal phosphate enzyme, YggS family [Selenomonas artemidis
F0399]
gi|320137008|gb|EFW28946.1| pyridoxal phosphate enzyme, YggS family [Selenomonas artemidis
F0399]
Length = 237
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 19/239 (7%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS + +L+ + +I + V L+AV+K + +R A+ G +
Sbjct: 1 MSDDIMICERLRAVRAEIAQARARRTHVPVEAPVELIAVTKNHPVEAMRTAIDSGVMNIG 60
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QEA K E + + IG LQ+NK V FD+I +V E A+ +
Sbjct: 61 ENRIQEALDKAE--TLEREAKWHLIGHLQTNKAKHAVRQFDLIHSVDSEHLAAEIDKAAE 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH- 173
K + + +QVN E KSG+ + L ++G MCI P N +
Sbjct: 119 KFGKVQNILVQVNLAREASKSGVYREDLDPLLRAVSGLPHLRLQGFMCIAPNYDNEEKCR 178
Query: 174 --FYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F + E+ +E K + LSMGMT D+ +A+ GA VR+G+ IFG R T
Sbjct: 179 PLFREMYELFQEAKEKEPPKADIRYLSMGMTHDYTVAVEEGANLVRVGTAIFGARQYHT 237
>gi|241598580|ref|XP_002404760.1| proline synthetase associated protein, putative [Ixodes scapularis]
gi|215500480|gb|EEC09974.1| proline synthetase associated protein, putative [Ixodes scapularis]
Length = 248
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 21/238 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ+ ++K+ ++ P LVAVSK ++ + A GQ F EN +QE +
Sbjct: 10 IAKALQLVREKVVAASKERSGPPA--RLVAVSKTKPAELLIAAYEEGQRHFGENYIQELE 67
Query: 63 KKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS---REKTASLLSLEMIKQ 116
+K +++ FIG LQ NKV+++ + ++ + + +L S +
Sbjct: 68 EKANSPEIQTACPEIKWHFIGRLQRNKVAKLAKVPNLFMVETLESSKTAMALNSCWALNG 127
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMC-----IPPAMGNP 170
L V +QVNT E QK+G+ P + V ++ L GLM G
Sbjct: 128 LPPLNVMVQVNTSGEEQKNGVEPKEAASLVEFVLKECPNLKFSGLMTIGMAEYDATAGPN 187
Query: 171 KPHFYLLS---EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LL E+ +E L +LSMGM+ D+E A+ G+T+VR+GS IFG R
Sbjct: 188 PDFVSLLKSREELCKELNLDVGAVELSMGMSADYEEAVRMGSTNVRVGSTIFGPRNYP 245
>gi|163941640|ref|YP_001646524.1| hypothetical protein BcerKBAB4_3727 [Bacillus weihenstephanensis
KBAB4]
gi|163863837|gb|ABY44896.1| conserved hypothetical cytosolic protein [Bacillus
weihenstephanensis KBAB4]
Length = 224
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLADVNEVIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETIFFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|116627606|ref|YP_820225.1| hypothetical protein STER_0778 [Streptococcus thermophilus LMD-9]
gi|116100883|gb|ABJ66029.1| Predicted enzyme with a TIM-barrel fold [Streptococcus thermophilus
LMD-9]
Length = 227
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 1 MTIEENKNDVYQAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K++D+ IG+LQ KV ++++L D + K A + + +
Sbjct: 61 FLDKY-QTLKKYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQ---KRADHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G P + + + ++ + GLM + P N + + +E
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLNQIKNLDKICIVGLMTMAPIDANTQELDKIFAET 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM+RD+++AI +G+T VRIGS F
Sbjct: 177 NELRQSIQDKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFF 222
>gi|87125612|ref|ZP_01081457.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
gi|86166912|gb|EAQ68174.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
Length = 221
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
S L+AVSK + IR + GQV F E+++QEA +K L +Q FIG LQ+
Sbjct: 18 PPSARLLAVSKGHPAAAIRDLAALGQVAFGESRVQEALRKQEELADLTQLQWHFIGRLQA 77
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +++ F I ++ +S ++ V +QV + +K G P + +
Sbjct: 78 NKVRQVLRAFGTIHSLDSLALCERVSRIAGEEGCQPRVMLQVKLRPDPKKGGWDPEELRQ 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIARECKLTKLSMGMTRDFELAI 201
++ ++ GLM I P P+ L ++A + L++ SMGM+ D+ A+
Sbjct: 138 VWPDLQRLPHCSIVGLMTIAPLGLAPEERLALFRDCRQLADDLGLSECSMGMSGDWAEAV 197
Query: 202 ASGATSVRIGSGIFGER 218
++GAT VR+GS +FGER
Sbjct: 198 SAGATWVRLGSALFGER 214
>gi|268638068|ref|XP_001134585.2| hypothetical protein DDB_G0278713 [Dictyostelium discoideum AX4]
gi|284018110|sp|Q1ZXI6|PROSC_DICDI RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|256012994|gb|EAS66901.2| hypothetical protein DDB_G0278713 [Dictyostelium discoideum AX4]
Length = 255
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 74/245 (30%), Positives = 110/245 (44%), Gaps = 28/245 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + K ++E + R +V LVAVSK ++ IR+ G F EN +QE
Sbjct: 10 LISSYKNIKDRVEIISNKFDR--HNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELV 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA-------------SLL 109
K L + +++ FIGS+QSNK + S+ ++ + E
Sbjct: 68 SKSEELSELNEIKWHFIGSIQSNKSKILTSVKNLYVVETVENKKILDKLAKSLLNNEENN 127
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT----KDFVILCRQKYQLNVEGLMCIPP 165
+ ++ L + IQVNT E KSG P + K + K LN GLM I
Sbjct: 128 NNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGN 187
Query: 166 AMGNPKPHFYLL-----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
P + + I+++ + +LSMGM+ DFE AI G+TSVR+GS IFG
Sbjct: 188 PNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFG 247
Query: 217 ERPCQ 221
ER
Sbjct: 248 ERDYS 252
>gi|256545127|ref|ZP_05472493.1| YlmE protein [Anaerococcus vaginalis ATCC 51170]
gi|256399168|gb|EEU12779.1| YlmE protein [Anaerococcus vaginalis ATCC 51170]
Length = 224
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +EN +L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDDLKKDLENY---------DANLLAVTKTHGIDKIMEVYNYGLRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + + D+ IG LQ+NKV++IV +I +V K ++ S
Sbjct: 52 LIEKKEKMPE--DINWHLIGHLQTNKVNKIVGEVSLIHSVDSLKILKKINSRAKSLSIVQ 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQVN E KSG ++ + + +N++GLM + P + E+
Sbjct: 110 DCLIQVNISKEETKSGFFVDEIDKVIEEASKLDNINIKGLMTMAPNTEDENLIRNCFREL 169
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGMT D+++A+ GA +R+GS IFG+R +
Sbjct: 170 KKIFEKLSNLSYNNIEMKYLSMGMTHDYKIALEEGANIIRVGSKIFGKRMYK 221
>gi|294501010|ref|YP_003564710.1| hypothetical protein BMQ_4266 [Bacillus megaterium QM B1551]
gi|294350947|gb|ADE71276.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 227
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q I + R ++ V L+AV+K V +K+ A+ G + EN+ +
Sbjct: 4 SVSENLEAVQQTIAEACKKVNRNREDVELIAVTKYVSAKRAAEAVDAGILHLGENRDEGL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + ++ FIGSLQ+ KV ++ D I ++ R A + + +
Sbjct: 64 LEKYESIGEK--ATWHFIGSLQTRKVKNVIDKVDYIHSLDRLSLAKEID---KRAEHRIK 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
++QVN E K G+ F+ + V GLM + P + +
Sbjct: 119 CFVQVNVAEEQSKHGLAVEDVIPFIQSLEAFANIQVVGLMTMAPHTDDESTLRSCFKGLK 178
Query: 182 R------ECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E L T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 179 KLQNRIQELNLPYAPCTELSMGMSNDYAIAIEEGATFIRLGTTLVGN 225
>gi|229013085|ref|ZP_04170250.1| hypothetical protein bmyco0001_35230 [Bacillus mycoides DSM 2048]
gi|229061506|ref|ZP_04198850.1| hypothetical protein bcere0026_35910 [Bacillus cereus AH603]
gi|229134710|ref|ZP_04263519.1| hypothetical protein bcere0014_36190 [Bacillus cereus BDRD-ST196]
gi|228648756|gb|EEL04782.1| hypothetical protein bcere0014_36190 [Bacillus cereus BDRD-ST196]
gi|228717740|gb|EEL69390.1| hypothetical protein bcere0026_35910 [Bacillus cereus AH603]
gi|228748339|gb|EEL98199.1| hypothetical protein bmyco0001_35230 [Bacillus mycoides DSM 2048]
Length = 224
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLADVNEVIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|291533842|emb|CBL06955.1| pyridoxal phosphate enzyme, YggS family [Megamonas hypermegale
ART12/1]
Length = 229
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENS-AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ ++ I+ S A + V LVAV+K D ++ A+ G + EN++QEA
Sbjct: 2 IKENLKTVQEHIKESIAKRHNAASEDVLLVAVTKNHDVTSMQEAIDAGANVIGENRVQEA 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K DV IG LQ+NK V LFD+IE+V K A L+ E K +
Sbjct: 62 LQKHE--TLNRDVTWHLIGHLQTNKAKYAVKLFDMIESVDSIKLAEALNKEAQKIDKVQQ 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
V +QVN E K+G+ + + + L + GLM I P + + +P F +
Sbjct: 120 VLVQVNLVKEASKTGVYLEELGELLAKIDILSNLKLMGLMFIAPKVDNLEDVRPMFAQMF 179
Query: 179 EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ + LSMGMT D+++AI GA VR+G+GIFG R
Sbjct: 180 KLFKKVQAKTFATSEIKYLSMGMTHDYQIAIEEGANIVRVGTGIFGPRQY 229
>gi|228476819|ref|ZP_04061464.1| pyridoxal phosphate enzyme, YggS family [Streptococcus salivarius
SK126]
gi|228251393|gb|EEK10538.1| pyridoxal phosphate enzyme, YggS family [Streptococcus salivarius
SK126]
Length = 227
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R D V+++AV+K V S + G AEN++ +
Sbjct: 1 MTIEENKNNVYQAVKKACEKANRSSDDVNIIAVTKYVPSDVAEDLVKTGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K +D+ IG+LQ KV ++++L D + K A + + +
Sbjct: 61 FLDKYQA-LKNYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G P + + ++ + GLM + P + + + +E
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLKQIEILDKICIVGLMTMAPIDADAQELDKIFAET 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM+RD+++AI +G+T VRIGS F
Sbjct: 177 NELRQSIQEKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFF 222
>gi|55980532|ref|YP_143829.1| hypothetical protein TTHA0563 [Thermus thermophilus HB8]
gi|55771945|dbj|BAD70386.1| conserved hypothetical protein (TIM-barrel fold) [Thermus
thermophilus HB8]
Length = 211
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 8/212 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L ++I + A R + V LVAV+K ++IR L+ G E+++QEA KK
Sbjct: 3 LPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKM 62
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +G LQ NK ++ ++ + A L K L V ++
Sbjct: 63 D----LLQAEWHLVGHLQRNKAKFAPRF-ALVHSLDSLRLAEALEKVGEKAGVRLKVLVE 117
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARE 183
VN G E QK G++ + + + R+ L V GLM +PP +P F LSE+A
Sbjct: 118 VNLGREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADR 177
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ D+E A+ GAT VR+G +F
Sbjct: 178 YGLPERSMGMSDDYEWAVEEGATLVRVGRALF 209
>gi|309775014|ref|ZP_07670029.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 3_1_53]
gi|308917232|gb|EFP62957.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 3_1_53]
Length = 216
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 26/231 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M KLQ ++ + D+V+L+AVSK ++I A +CG +F ENK+QE
Sbjct: 1 MD-KKKLQEIQKNL----------PDNVTLIAVSKTHTKEEIDEAYACGCRVFGENKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ Q IG LQ NKV ++V L D+I+++ + A + + K + +
Sbjct: 50 LKEKYDAR-----YQWHMIGHLQRNKVKDVVPLADMIQSLDSLRLAEEIEKQCAKIDKIM 104
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
PV I+VN E K+G+ + FV C Q L+V+GLMC+ P + F +
Sbjct: 105 PVLIEVNISREANKTGVYMEECSAFVQQCMQFKHLDVQGLMCVGPLDADDERIEECFERM 164
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + K+ LSMGM+ D++LA+ G+ +R+G+ IFG+R
Sbjct: 165 NVLYHKLQGEYGAEKIRYLSMGMSSDYQLALKHGSNMIRLGTVIFGKRNYN 215
>gi|308177568|ref|YP_003916974.1| pyridoxal phosphate-dependent enzyme [Arthrobacter arilaitensis
Re117]
gi|307745031|emb|CBT76003.1| putative pyridoxal phosphate-dependent enzyme [Arthrobacter
arilaitensis Re117]
Length = 245
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 10/226 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L QKI +A +A R + SV L+ V+K +D+ ++ +A++ G ENK+QEA+ K+
Sbjct: 19 NLAAVNQKIAAAAEVAGRDRHSVRLLPVTKTIDTDRLALAIAAGVETLGENKVQEAQDKY 78
Query: 66 IPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+++ + IG LQ+NK + D + K A L + + R L V+I
Sbjct: 79 EHFIEQFPHLRYAIIGPLQTNKAKFVAKFADEFHALDSLKLAETLQRRLELEDRTLEVFI 138
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLSEIA 181
QVNT E KSGI + + +L GLM + + LL E
Sbjct: 139 QVNTSGEESKSGIEAADAANLLGSLAPLDRLTPVGLMTMAANTTDQAAVRASFSLLRETR 198
Query: 182 RECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D+ELAIA GAT VR+G GIFG R
Sbjct: 199 DRLQQDAPAGFQHLSMGMSGDYELAIAEGATVVRVGQGIFGARSYP 244
>gi|86133337|ref|ZP_01051919.1| alanine racemase, N-terminal domain [Polaribacter sp. MED152]
gi|85820200|gb|EAQ41347.1| alanine racemase, N-terminal domain [Polaribacter sp. MED152]
Length = 222
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 100/233 (42%), Gaps = 26/233 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ K + ++V+LVAVSK ++ A GQ +F ENK+QE
Sbjct: 2 IEKNLQKIKATL----------PENVTLVAVSKTKPVADLQEAYDAGQRVFGENKIQEMV 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D+Q IG LQSNKV + D+I V + KT ++ E K +R +
Sbjct: 52 DKYD--VLPKDIQWHMIGHLQSNKVKYMAHFVDLIHGVDKLKTLKVIDKEAKKHNRTINC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q E K G+ ++ + +NV G M + + S +
Sbjct: 110 LLQAKIAEEDSKFGLSFSEIETILNSDEFAGLENINVAGFMGMATFTSDENQLNNEFSSL 169
Query: 181 AR------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
C L LSMGM+ D+ LAI +G+T +R+G+ IFG R
Sbjct: 170 KTFFDKQKEHLNLPNCNLQILSMGMSGDYALAIKNGSTMIRVGNAIFGSRNYN 222
>gi|297537837|ref|YP_003673606.1| alanine racemase domain-containing protein [Methylotenera sp. 301]
gi|297257184|gb|ADI29029.1| alanine racemase domain protein [Methylotenera sp. 301]
Length = 240
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 2 SLGNKLQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
++GN+LQ I + SA + SV L+AVSK S+ IR A GQ +F EN LQ
Sbjct: 3 TIGNRLQDILAIIHSTISASQYRSASQSVQLLAVSKAQTSQAIREAYLAGQTMFGENYLQ 62
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L ++ FIG +QSNK I F + +V R K A L+
Sbjct: 63 EALDKQVQLNDLA-IEWHFIGPIQSNKTQLIAQNFAWVHSVDRLKIAQRLNDARPANLAP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVNT E KSG+ N+ + + +L + GLM IP + +
Sbjct: 122 LQVCIQVNTSNEASKSGVSTNELEALATAIVKMPRLKLRGLMAIPEPSKDYNQQRSQFKQ 181
Query: 180 --------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A+ L LS+GM+ D++ AI G+T VRIGS +FG R
Sbjct: 182 VRECYDALLAQGFALDTLSIGMSDDYQAAIEEGSTIVRIGSALFGARTY 230
>gi|116328682|ref|YP_798402.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330661|ref|YP_800379.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121426|gb|ABJ79469.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124350|gb|ABJ75621.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 222
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q +++ RP++ +L+AVSK +K++ A++ G + F EN++QE
Sbjct: 1 MGIREHYQKIYAELQKL-----RPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQE 55
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ + D L IG +QS + ++ + V + L K+ +
Sbjct: 56 GIEKFSEWLRNKDTSLILHHIGPVQSGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYL 176
+ ++Q N E K G+ + + + GLM + P+ G+P +
Sbjct: 116 NIRYFLQANLTGEDTKHGVERKELIGILKQKENLSNAYCKLEGLMVMGPSDGDPTKTKEV 175
Query: 177 LSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ KLSMGM+ D+++AI G+ VRIGS IFGER
Sbjct: 176 FRELSKIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN 222
>gi|145507578|ref|XP_001439744.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406939|emb|CAK72347.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ Q I ++ V+LVAVSK + I+ A GQ F EN + E
Sbjct: 5 LQQNLQKVLQTIVKASETTN---KQVTLVAVSKTKPVELIKEAYEGGQKHFGENYVNELI 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ D+ FIG LQ+NKVS I+ + I++V K A + K R +
Sbjct: 62 E--KAPLLPNDISWHFIGHLQTNKVSTIMKIQNLEFIQSVDSLKLAQKIEKHCEKLGRNI 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
+++Q+ E K+G ++ K + + + + GLM I P + L
Sbjct: 120 NIFVQIKLSEEESKTGAEIDEAKLIIQEIITKFKFIKLIGLMTIGPIGNKEIFQQLVDLA 179
Query: 178 SEIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E L LSMGM+ D+ AI GA VR+GS IFGER +
Sbjct: 180 KKFENEFNLQPLNLSMGMSGDYLDAIKYGADYVRVGSAIFGERNVK 225
>gi|160914738|ref|ZP_02076952.1| hypothetical protein EUBDOL_00745 [Eubacterium dolichum DSM 3991]
gi|158433278|gb|EDP11567.1| hypothetical protein EUBDOL_00745 [Eubacterium dolichum DSM 3991]
Length = 215
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 25/229 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ K + Q++ V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MNI-EKTKQILQEL----------PSHVELIAVSKTRTKEEVDEAYRLGCRTFGENKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ P IG LQ NKV + V D+IE++ + A + + K + +
Sbjct: 50 LVAKYDP-----KYTWHLIGHLQRNKVKDAVKYADMIESLDSMRLAQEIEKQCAKIDKVM 104
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
PV ++VN E K+GI + +F+ C+Q L+++GLMC+ P N + F +
Sbjct: 105 PVLVEVNISQEENKTGIAYEECINFIKECQQFPHLDIQGLMCVGPLTDNQADIEACFESM 164
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +E + + LSMGM+ D+ELAI G+T VR+G+ +FG+R
Sbjct: 165 HTLFQEAQEAFGPSIHILSMGMSDDYELAIKHGSTMVRLGTILFGKRDY 213
>gi|33860951|ref|NP_892512.1| hypothetical protein PMM0394 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639683|emb|CAE18853.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 212
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 14/223 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + K+++ +V+L+AVSK SK+I++ + GQ F E++ QE
Sbjct: 1 MEIS-NYLQIKKQL----------PLNVNLLAVSKGFSSKEIKIINNLGQNDFGESRFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K I L +++ FIG +Q+NK+ +IV F+ I +V + +S ++ R
Sbjct: 50 AIEKKILLDDLKNIKWHFIGRVQTNKIRKIVQNFEYIHSVDSYEKLLKISNVSFEEKRNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
V +QV + K G P + ++ + ++GLM I P + + L +
Sbjct: 110 IVMLQVKLSDDPNKGGFNPKVLLEKWDQIKEFKSIKIKGLMTINPKGLSSIENIKLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A KL SMGM+ D+E A+ +G+T +R+GS IFG R
Sbjct: 170 RYLADSLKLQDCSMGMSGDWEEAVKAGSTWLRLGSTIFGNRTY 212
>gi|212551104|ref|YP_002309421.1| hypothetical protein CFPG_747 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549342|dbj|BAG84010.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 234
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 26/231 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L ++ ++ + V LVAVSK +S+ I + GQ +F ENK++E
Sbjct: 1 MNVIDRLNYIRKHLK----------EGVRLVAVSKFQNSESILEVYNAGQRLFGENKVKE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ D++ FIG LQ+NK++ +V D I ++ + + + +K +R +
Sbjct: 51 LYHKYQQ--LPKDIEWHFIGHLQTNKLNYVVPFVDTIHSIDSFRLLNKTNYCALKYNRRI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V +Q++ E+ K G + ++ L + +++ GLM + N S
Sbjct: 109 KVLLQMHIAKEVNKFGFSFGEVENLLSDKLWKTFKNVDIIGLMGMASFTENQDQITKEFS 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + +LSMGM+ D+ LAI G+T VRIGS IFG+
Sbjct: 169 SLSNFFLKLKNQYFFDKKNFKELSMGMSGDYLLAIKQGSTMVRIGSSIFGK 219
>gi|290892177|ref|ZP_06555173.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290558300|gb|EFD91818.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 229
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|217967624|ref|YP_002353130.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
gi|217336723|gb|ACK42516.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
Length = 235
Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 14/228 (6%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
M+ + + +++I A R +S+VAV+K + IR A+ G EN
Sbjct: 1 MNDLSFIAENWKRVQERIIKKAEECGRDPSEISVVAVAKGYPPEYIREAVKIGINKIGEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++QEA+KK L + + +G LQ NKV + V +F +I +V A ++ K+
Sbjct: 61 RVQEAEKKIS-LLSDLPCEWHMVGHLQRNKVKKAVKMFFLIHSVDSLDLAEEINKHAGKE 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + + +Q+N E K G + LN++GLM I P + +
Sbjct: 120 GKKVDILLQLNLSKEPTKHGFKEEEFWRTYEKIFALKNLNIKGLMTIGPLTQDKDAIREV 179
Query: 177 LSEIAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + L LSMGM+ DFE+AI G+ +R+G IF
Sbjct: 180 FRKLYNIWKKLIELTKLDLPYLSMGMSEDFEIAIEEGSNILRLGRIIF 227
>gi|254421874|ref|ZP_05035592.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7335]
gi|196189363|gb|EDX84327.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7335]
Length = 230
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +Q++ SV ++ V+K S +R A G FAENK+QE
Sbjct: 14 LSARLAHIRQQV----------PPSVRIIGVTKTFSSDIVRQAYDAGFREFAENKVQEGI 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ FIG +QSNK ++V FD I +V K A+ L+ + +
Sbjct: 64 AKQAKLSDLTDITWHFIGHIQSNKALKVVENFDWIHSVDSLKLAARLNRQAKSLGKRPSC 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE--- 179
+QV + K+G + Q L++ GLM IPP + +
Sbjct: 124 CLQVKLAPDPAKTGFEIETLLSGLADLDQLSALDIRGLMVIPPYGLTNVQVRAIFEKGAA 183
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A+E K+ +LSMGM+ DFE AIA+GAT +RIG G+FG+R
Sbjct: 184 LAQEIAGRSLVNIKMDQLSMGMSGDFEQAIAAGATMIRIGRGLFGQR 230
>gi|328767687|gb|EGF77736.1| hypothetical protein BATDEDRAFT_91499 [Batrachochytrium
dendrobatidis JAM81]
Length = 241
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 18/231 (7%)
Query: 3 LGNKLQVFKQKIENS-AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + + +I++ + + + LVAVSK + I A G F EN
Sbjct: 14 IADNIADITNRIQSIPCKHS--WQKQIRLVAVSKTKPASDIAAAYELGHRHFGEN---VQ 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSE--IVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ D+ FIGS+QSNK V IET+ K A ++ K +
Sbjct: 69 ELVEKASILPSDIHWHFIGSIQSNKCKALADVPNLWTIETIDSSKKALTMNKACQKLASP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG---NPKPHFY 175
L V++Q+NT E KSGI+P+ + +L + GLMCI + P F
Sbjct: 129 LRVFLQINTSGEATKSGILPSNCVMTAKEILDECDKLELIGLMCIGAPHNAKNDRNPDFD 188
Query: 176 LLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL E ++ + +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 189 LLVECKQQIEAAFGMSGLELSMGMSDDFESAIEYGSTNIRVGSSIFGSRSY 239
>gi|217963824|ref|YP_002349502.1| pyridoxal phosphate enzyme, YggS family [Listeria monocytogenes
HCC23]
gi|217333094|gb|ACK38888.1| pyridoxal phosphate enzyme, YggS family [Listeria monocytogenes
HCC23]
gi|307571605|emb|CAR84784.1| conserved hypothetical protein [Listeria monocytogenes L99]
Length = 229
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKDVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|317129286|ref|YP_004095568.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
gi|315474234|gb|ADU30837.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
Length = 227
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q ++++ R + V+++AV+K V ++ + AL+ G EN+++E
Sbjct: 1 MSVQENLNRIHQVVKDACKKENRDYNCVNIIAVTKYVSIERAKDALASGIQHIGENRVEE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KKW FIGSLQS KV +++ FD I ++ R A + + +
Sbjct: 61 ALKKWE--VLGEKGTWHFIGSLQSKKVKKMIHQFDYIHSLDRLSLAKEIDKRT-PEGETM 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E KSGI P +T F+ + + V GLM + P + N + ++
Sbjct: 118 KCFVQVNVSGEETKSGIKPEETISFIHDLSKYKAIEVVGLMTMAPIVENAEEVRPYFRQL 177
Query: 181 AR------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ KL+ +LSMGM+ DF +A+ GAT +RIG+ + G+
Sbjct: 178 RELKEKIEKLKLSHAPCHELSMGMSNDFAIAVEEGATFIRIGTALVGK 225
>gi|330794212|ref|XP_003285174.1| hypothetical protein DICPUDRAFT_28875 [Dictyostelium purpureum]
gi|325084895|gb|EGC38313.1| hypothetical protein DICPUDRAFT_28875 [Dictyostelium purpureum]
Length = 247
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 76/238 (31%), Positives = 110/238 (46%), Gaps = 21/238 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK-LQEA 61
L + K ++E + R +V+LVAVSK + IR+ G F EN +QE
Sbjct: 9 LIENYKNIKDRVEYVSNKFDRR--NVALVAVSKTKPVEMIRILYEKGHRHFGENYVIQEL 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-----IKQ 116
+K L +++ +IGS+QSNK+ + S+ ++ + EK L
Sbjct: 67 IQKSEELASLNEIKWHYIGSIQSNKIKHLASVKNLYVVETVEKKEVLDKFAKSWDLEKSN 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT----KDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
+ L + IQVNT E KSG PN K V + K +LN GLM I
Sbjct: 127 NTKLNIMIQVNTSQEESKSGCHPNDCLELVKYCVEDEKCKEKLNFLGLMTIGSPNATEDQ 186
Query: 173 HFYLL-----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + IA+ + +LSMGM+ DFE AI G+TSVR+GS IFG+R
Sbjct: 187 PDFKCLVECKNNIAKNTGIPLESIQLSMGMSHDFEPAIEFGSTSVRVGSAIFGDRDYS 244
>gi|223995373|ref|XP_002287370.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976486|gb|EED94813.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 262
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 77/242 (31%), Positives = 107/242 (44%), Gaps = 23/242 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ + KQ++E + R SV LVAVSK + + A GQ F EN QE
Sbjct: 19 LNISANIASVKQRMEYAIAANDREAGSVRLVAVSKTKPLELLVAAYETGQRYFGENYAQE 78
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS-------------REKTAS 107
K + DV FIG LQSNK + +V + + +
Sbjct: 79 LMTKSTEMPD--DVAWHFIGPLQSNKAAPLVKTVGLNKLACIETVSTIKLASKLNRAAET 136
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCI-P 164
+ + L +YIQVNT E KSG+ P + + L+++GLM I
Sbjct: 137 WNEESGSDEKKKLGIYIQVNTSGEDSKSGVTPGAEVIDLVKQITEECSTLSIDGLMTIGA 196
Query: 165 PAMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P E + ++ K KLSMGM+ DFE+AIA GATSVR+GS IFGER
Sbjct: 197 PGDYTCFDSLAKCREEVAGVLDKDPKELKLSMGMSGDFEVAIAKGATSVRVGSTIFGERD 256
Query: 220 CQ 221
Sbjct: 257 YS 258
>gi|308177570|ref|YP_003916976.1| pyridoxal phosphate-dependent enzyme [Arthrobacter arilaitensis
Re117]
gi|307745033|emb|CBT76005.1| putative pyridoxal phosphate-dependent enzyme [Arthrobacter
arilaitensis Re117]
Length = 253
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +I + A R SV L+ V+K V ++++R+A+ G ENK+QEA
Sbjct: 15 DFAANLASVRARIAAAETAAGRRAGSVRLLPVTKTVPAQRLRLAIEAGVSWLGENKVQEA 74
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L ++ IG LQ+NK + D + + + A L + + R LP
Sbjct: 75 WEKSQQLADVPQLKYSVIGHLQTNKAKYVARFADEFQALDNLRQAQALERRLEVEDRILP 134
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V+IQVNT E K GI P Q F+ + +L V+GLM + P + F L
Sbjct: 135 VFIQVNTSGEESKFGIQPAQAAGFLKQLQVFERLQVKGLMTLAVFSPEQELVRACFRKLV 194
Query: 179 EIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E + +LSMGM+ DFELAIA GAT VR+G GIFG R
Sbjct: 195 AVRQELRELDLGNVEELSMGMSGDFELAIAEGATVVRVGQGIFGAR 240
>gi|296394950|ref|YP_003659834.1| alanine racemase [Segniliparus rotundus DSM 44985]
gi|296182097|gb|ADG99003.1| alanine racemase domain protein [Segniliparus rotundus DSM 44985]
Length = 229
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I ++ + R V+LV V+K + + + G F E++ QEA+
Sbjct: 7 LAGRLEQVRERIASACAKSGRDACEVTLVVVTKFFPASDVALLYELGCREFGESRDQEAR 66
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + + IG +Q NK I S V+++V + +
Sbjct: 67 AKAAQLAEAAPQARWHMIGQIQRNKAKSIASWAHVVQSVDDSRLVAAFEKTAQPL----D 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYL 176
V +QV+ + ++SG + + L ++GLM IPP +P
Sbjct: 123 VLVQVSLDGDEKRSGAAAERVFELADQVEAASNLRLKGLMAIPPLGADPAQAFAALAALH 182
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ A T LS GM+ DFE AIA+G++ VR+G+ I G RP +
Sbjct: 183 AALKAAHPDATALSAGMSGDFETAIAAGSSCVRVGAAILGSRPIPS 228
>gi|16801203|ref|NP_471471.1| hypothetical protein lin2137 [Listeria innocua Clip11262]
gi|16414651|emb|CAC97367.1| lin2137 [Listeria innocua Clip11262]
Length = 229
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +I+ S + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLEKVTAQIKQSCEKSNRQQADVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLDKTRELAGKDDICWHYIGSLQTRKVKDVLPEIDYLHSLDRSSLAKEIE---KRATKPI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + K ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEADFN-FIEIIGLMTMAPITNSDKELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNVPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|190346825|gb|EDK39002.2| hypothetical protein PGUG_03100 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 105/238 (44%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + Q++ ++ +V LVAVSK+ + I + G F EN +QE
Sbjct: 23 LISAYEAISQRVSTTS-----NSRNVRLVAVSKLKPASDILALYNHGVRHFGENYVQELI 77
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQSR 118
K D++ FIG LQ+ K ++ D + V + + +
Sbjct: 78 GKAQE--LPKDIKWHFIGGLQTGKCKDLAKGIDNLYAVETIDSLKKCKKLDTARLNAEKD 135
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE-----GLMCIPPAM----GN 169
L VY+Q+NT E QKSG + TKD R + GLM I
Sbjct: 136 PLNVYLQINTSGEEQKSGFSLSDTKDLKDTVRFLMSDECKKLKLQGLMTIGSFEASTSDE 195
Query: 170 PKPHFYLLS----EIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F LS E+ +E L +LSMGM+ DFE AI G+TSVR+GS IFG RP ++
Sbjct: 196 ENKDFKALSTVKTELDKEFNLDLELSMGMSNDFEQAIKQGSTSVRVGSSIFGARPPKS 253
>gi|256395234|ref|YP_003116798.1| alanine racemase domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256361460|gb|ACU74957.1| alanine racemase domain protein [Catenulispora acidiphila DSM
44928]
Length = 247
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++ I +A A R VSL+AV+K + +RV G + EN+ QEA
Sbjct: 21 ISENLAAVREDIAAAARKASRDPSEVSLIAVTKTYPASDVRVLAELGVLDVGENRDQEAA 80
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ FIG LQ+NK S + D + +V R + + LS ++ + L
Sbjct: 81 PKARATAGL-GLRWHFIGQLQTNKASSVAEYADFVHSVDRIRLVAALSRSAVRYDKELTC 139
Query: 123 YIQVN------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+QV+ + G P+Q + LN+ GLM + P P P F
Sbjct: 140 LVQVDLGNAEPMDDNAARGGAFPDQVPELADAIAAAPGLNLGGLMAVAPLGAEPGPAFER 199
Query: 177 LSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A + T +S GM+ D A+A+GAT VRIGS I G R
Sbjct: 200 LHTLAMRLRTTHPSATMISAGMSGDLGEAVAAGATHVRIGSAILGIR 246
>gi|260887799|ref|ZP_05899062.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
35185]
gi|260862475|gb|EEX76975.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
35185]
Length = 236
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 19/233 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRP----KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L + IE S AKR K+ V LVAV+K ++R A++ G EN++
Sbjct: 8 IEENLHEVLRSIEES--RAKRTIADAKEPVRLVAVTKNHGVAEMREAIAHGVTDIGENRI 65
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA++K+ E IG LQ NK V LFD+I +V + A L E K +
Sbjct: 66 QEAREKFE--TLERTAVWHLIGHLQKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGK 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V +QVN E KSGI + + L + GLMCI P + L
Sbjct: 124 RQDVLVQVNLAKEASKSGIYEEDLQPLLEAVDALPHLRLCGLMCIAPNYDEVEETRPLFR 183
Query: 179 EIA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 184 RMYEIFQRTKEFPWKTANINYLSMGMTHDYRIAVEEGANIVRVGTAIFGPRQY 236
>gi|298377624|ref|ZP_06987576.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_19]
gi|298265643|gb|EFI07304.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_19]
Length = 222
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D++ FIG LQSNKV +I +I ++ K + ++ + K R +
Sbjct: 51 L--SAKQKVLPEDIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V ++++ E K G+ P + K+ + + + GLM + +
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESSAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 179 EI------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
I ++SMGM+ D+ +AI G++ +R+G+ IFGER
Sbjct: 169 NIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSSLIRVGTSIFGEREY 222
>gi|329955861|ref|ZP_08296664.1| pyridoxal phosphate enzyme, YggS family [Bacteroides clarus YIT
12056]
gi|328525241|gb|EGF52291.1| pyridoxal phosphate enzyme, YggS family [Bacteroides clarus YIT
12056]
Length = 221
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++ + V LVAVSK ++ I A + GQ +F E+K+QE
Sbjct: 2 IAENIKQVLSEL----------PEGVRLVAVSKFHPNEAIEEAYNAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ FIG LQ+NK+ IV +I V K + ++ + K R +
Sbjct: 52 AKYES--LPKDIEWHFIGHLQTNKIKYIVPYVALIHGVDSYKLLTEINKQAAKAGRMVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+Q++ E K G ++ ++ ++ + + GLM + N + F L
Sbjct: 110 LLQLHIAQEETKFGFSFDECREMLTGDEWKELKNIRICGLMGMATNTDNVEQIKAEFCSL 169
Query: 178 SEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 170 NSFFQEVKATWFSNAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERIY 221
>gi|229168641|ref|ZP_04296363.1| hypothetical protein bcere0007_35980 [Bacillus cereus AH621]
gi|228614797|gb|EEK71900.1| hypothetical protein bcere0007_35980 [Bacillus cereus AH621]
Length = 224
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLVDVNEAIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + FIGSLQ+ KV EI++ D + ++ R A + + + +
Sbjct: 61 FLQKYEYFSSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|42522074|ref|NP_967454.1| hypothetical protein Bd0466 [Bdellovibrio bacteriovorus HD100]
gi|39574605|emb|CAE78447.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 219
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 19/223 (8%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++I A A ++AVSK+ ++K+R GQ +F EN +QEA +K L
Sbjct: 3 LKEITEKAKPA-------KILAVSKLQPAEKVRALHVEGQRLFGENYVQEALEKQSVLSD 55
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D+Q IG LQ NK +V F +I +V + A ++S + ++ + IQVN
Sbjct: 56 LSDIQWHLIGHLQKNKAKLVVGKFHLIHSVDSLELAQVISRQCEQKGVSQNILIQVNLAG 115
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIARECK-- 185
E K G ++ + L++ GLM +PP +P+F L ++ K
Sbjct: 116 EASKEGFSAETLENQWAELTKLPHLHIYGLMTMPPLTETGAEVRPYFAELRQLRDRLKTT 175
Query: 186 -------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMG + D+ +A+ GAT VR+G+ +FGERP +
Sbjct: 176 TDTTVHPLNELSMGTSHDYPVAVEEGATIVRLGTILFGERPAK 218
>gi|330995376|ref|ZP_08319286.1| pyridoxal phosphate enzyme, YggS family [Paraprevotella xylaniphila
YIT 11841]
gi|329575871|gb|EGG57395.1| pyridoxal phosphate enzyme, YggS family [Paraprevotella xylaniphila
YIT 11841]
Length = 223
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ +I+ V LVAVSK I A + GQ +F E+ +QE ++K+
Sbjct: 3 QIQDEIKRITASL---PFGVQLVAVSKYHPESCIEEAYAAGQRVFGESHVQELRRKYD-- 57
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
D++ FIG LQ+NKV I +I V K + + K R +P +Q++
Sbjct: 58 NLPKDIEWHFIGHLQTNKVKYIAPYVAMIHAVDSMKLLLEVDKQGEKSGRVIPCLLQLHV 117
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPA---MGNPKPHFYLLSEIARE 183
E K G P++ + + K + + GLMC+ M + F+L E+ +E
Sbjct: 118 AKEETKFGFTPDECRTLIADEEWKKLAHVQICGLMCMASNTDDMEQVRSEFHLAYELFKE 177
Query: 184 CK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
K + S GM+ D+ +AI G+T +R+GS IFGER
Sbjct: 178 LKTGAFANAPYFKECSWGMSHDYPIAIEEGSTLIRVGSKIFGERVY 223
>gi|315657455|ref|ZP_07910337.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315491927|gb|EFU81536.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 248
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 118/242 (48%), Gaps = 22/242 (9%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +LQ Q++ +A A R +S+ ++ VSK +R AL+ G F ENK Q
Sbjct: 1 MSGFSQRLQDLSQRVAAAAATAGRDSESIRILPVSKTHPVADLREALAAGVSEFGENKPQ 60
Query: 60 EAKKKWIPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
E K L D + IG+LQ NK IV+ ++++ K A L+
Sbjct: 61 ELATKAAELGANLDLCADRNEVSPRWVQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLN 120
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + R L V I+VNT E K G+ P +T + L + +L++ GLM + +
Sbjct: 121 RLLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRV 180
Query: 171 KPH--FYLLSEIA--REC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + S++A RE +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 181 GECGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 240
Query: 219 PC 220
Sbjct: 241 DY 242
>gi|146418812|ref|XP_001485371.1| hypothetical protein PGUG_03100 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 104/238 (43%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + Q++ ++ +V LVAVSK+ + I + G F EN +QE
Sbjct: 23 LISAYEAISQRVSTTS-----NSRNVRLVAVSKLKPASDILALYNHGVRHFGENYVQELI 77
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQSR 118
K D++ FIG LQ+ K ++ D + V + + +
Sbjct: 78 GKAQE--LPKDIKWHFIGGLQTGKCKDLAKGIDNLYAVETIDSLKKCKKLDTARLNAEKD 135
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE-----GLMCIPPAM----GN 169
L VY+Q+NT E QKSG TKD R + GLM I
Sbjct: 136 PLNVYLQINTSGEEQKSGFSLLDTKDLKDTVRFLMSDECKKLKLQGLMTIGSFEASTLDE 195
Query: 170 PKPHFYLLS----EIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F LS E+ +E L +LSMGM+ DFE AI G+TSVR+GS IFG RP ++
Sbjct: 196 ENKDFKALSTVKTELDKEFNLDLELSMGMSNDFEQAIKQGSTSVRVGSSIFGARPPKS 253
>gi|222153416|ref|YP_002562593.1| hypothetical protein SUB1289 [Streptococcus uberis 0140J]
gi|222114229|emb|CAR42810.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 223
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + + + + + A R +DSVS++AV+K VDS R + G AEN++ +
Sbjct: 1 MSLKENKEAVFKAVNEATLSAGRSEDSVSIIAVTKYVDSDIARQLVDTGVSHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ + IGSLQ KV ++++ D + A + + +
Sbjct: 61 FLDKYKA-LKDCQLTWHLIGSLQRRKVKDVINYVDYFHALDSVSLAKEIQK---RAEHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G P + + Q+ + GLM + P + + E
Sbjct: 117 NCFLQVNVSGEESKHGFAPEEVSHVLDQLADYDQIRLIGLMTMAPFEADQSTIAEIFKET 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+ DF +AI GAT VRIG+ F
Sbjct: 177 NQLRQRLQAENRKNMPFTELSMGMSNDFPIAIQEGATFVRIGTSFF 222
>gi|313632496|gb|EFR99508.1| pyridoxal phosphate enzyme, YggS family [Listeria seeligeri FSL
N1-067]
Length = 229
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRASLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEETKHGFS-KEEALSFLQEADFKYIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|268611658|ref|ZP_06145385.1| alanine racemase domain protein [Ruminococcus flavefaciens FD-1]
Length = 240
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N Q I+ + + V ++AV+K V ++ + G + EN++QE
Sbjct: 9 TVKNNFSTITQNIKEAFDKYRNDGSKVDIMAVTKTVPAEVVNWIFDWGMDLMGENRVQEY 68
Query: 62 ----KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ ++ FIG LQ+NKV I++ D+I++V K A + +
Sbjct: 69 LSKKDLYSASTKSGDPPRIHFIGHLQTNKVKYIINEMDMIQSVDSVKLAHEIDRLAKANN 128
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHF 174
+ + + +VN G E KSGI P++ ++ + + V GLM IPP +
Sbjct: 129 KVMDILCEVNIGGEESKSGIAPDKLEELLEAAASMENIRVRGLMTIPPPTDSDIFLGRMG 188
Query: 175 YLLSEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +++ E + LSMGMT D+ A+ G+T VRIGSG+FG R
Sbjct: 189 ELFNKLKDEKRENISMDILSMGMTHDYIDAVKYGSTLVRIGSGLFGARNYN 239
>gi|256825472|ref|YP_003149432.1| pyridoxal phosphate enzyme, YggS family [Kytococcus sedentarius DSM
20547]
gi|256688865|gb|ACV06667.1| pyridoxal phosphate enzyme, YggS family [Kytococcus sedentarius DSM
20547]
Length = 254
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 103/239 (43%), Gaps = 21/239 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + LQ +IE + A R + V+LV V+K ++ + + G EN+ QEA
Sbjct: 14 LADGLQATLARIEEACGRAGRSPEEVTLVVVTKFFGAEDLARLVRLGVRDVGENRDQEAA 73
Query: 63 KKWIPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K V++ FIG +QS K + D++ +V R K L
Sbjct: 74 AKAAAWPDHLPAGERGVAEAVRMHFIGQVQSKKAGSVAGYADLVHSVDRLKLVGALDRGA 133
Query: 114 IKQSRFLPVYIQVN-------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+ R L V +QV+ + + G P+ + + +L++ GLM + P
Sbjct: 134 QRHGRRLAVCVQVDLDPVVEGGEPDAGRGGAHPDDLPELCAAVDRSERLDLAGLMTVAPP 193
Query: 167 MGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F L+ +A T LS GM+ D E A+A+GAT VR+GS I G RP
Sbjct: 194 QVEPARAFAELARVHAAVLAEHPGATMLSAGMSGDLEAAVAAGATHVRVGSAIMGARPP 252
>gi|224024555|ref|ZP_03642921.1| hypothetical protein BACCOPRO_01281 [Bacteroides coprophilus DSM
18228]
gi|224017777|gb|EEF75789.1| hypothetical protein BACCOPRO_01281 [Bacteroides coprophilus DSM
18228]
Length = 222
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MDIQTNIKEILTEL----------PSGVRLVAVSKFHPNECIEAAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D++ FIG LQ+NKV I +I V K ++ + K +R +
Sbjct: 51 LTEKYQ--TLPKDIEWHFIGHLQTNKVKYIAPFISMIHAVDSFKLLEEINKQASKVNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P ++++ E K G ++ + + +++ G+M + +
Sbjct: 109 PCLLEIHIAQEESKYGFTFESCREMLQEGAWKNLKNISINGVMGMATNTEDSDEIRKEFK 168
Query: 179 EIAR------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E + ++SMGM+ D+ LAI +G+T VR+GS IFG+R
Sbjct: 169 LLHDFFTELKQTYFPNEAQFCEISMGMSHDYPLAIEAGSTLVRVGSKIFGDRIY 222
>gi|116873461|ref|YP_850242.1| hypothetical protein lwe2045 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742339|emb|CAK21463.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 229
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +I+ + + R ++ V+LVAV+K +D+ I + G F EN+
Sbjct: 1 MTKQANLEQVTAQIKRACEESNRQQEDVTLVAVTKTIDTAGITELYNLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTIELADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEADFN-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|169335055|ref|ZP_02862248.1| hypothetical protein ANASTE_01461 [Anaerofustis stercorihominis DSM
17244]
gi|169257793|gb|EDS71759.1| hypothetical protein ANASTE_01461 [Anaerofustis stercorihominis DSM
17244]
Length = 231
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L I+ S + ++V L+AV+K +++I+ + G ENK++E
Sbjct: 3 MSIKDNLDKILNNIKTSGDNSAFN-ENVKLLAVTKFRTNEEIKEVIDYGIKDLGENKVKE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K ++ FIG LQ NKV +IV +I +V + ++ + K+
Sbjct: 62 FLGKY-EYFKGQNINWHFIGHLQRNKVKDIVGKVHLIHSVDSIRLMEEINKQSEKKDIIT 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+ N G E K G ++ ++ + +NV G+MC+ P + + ++
Sbjct: 121 NILIEFNIGKEENKYGFDESEVEEAFNKSIEFKNINVMGVMCMAPFTKDKDVLVNVFRKL 180
Query: 181 AR-------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ L+ +SMGM+ D+++AI G+ VRIG+ IF
Sbjct: 181 RKIYDNCRNMYNKCDNINLSVISMGMSNDYQVAIDEGSNIVRIGTSIF 228
>gi|330838695|ref|YP_004413275.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
35185]
gi|329746459|gb|AEB99815.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
35185]
Length = 230
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 104/233 (44%), Gaps = 19/233 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRP----KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L + IE S AKR K+ V LVAV+K ++R A++ G EN++
Sbjct: 2 IEENLHEVLRSIEES--RAKRTIADAKEPVRLVAVTKNHGVAEMREAIAHGVTDIGENRI 59
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA++K+ E IG LQ NK V LFD+I +V + A L E K +
Sbjct: 60 QEAREKFE--TLERTAVWHLIGHLQKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGK 117
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V +QVN E KSGI + + L + GLMCI P + L
Sbjct: 118 RQDVLVQVNLAKEASKSGIYEEDLQPLLEAVDALPHLRLCGLMCIAPNYDEVEETRPLFR 177
Query: 179 EIA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 178 RMYEIFQRTKEFPWKTANINYLSMGMTHDYRIAVEEGANIVRVGTAIFGPRQY 230
>gi|224498518|ref|ZP_03666867.1| hypothetical protein LmonF1_02029 [Listeria monocytogenes Finland
1988]
Length = 229
Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 AR------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGI 214
+ +L +LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCIELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|315304082|ref|ZP_07874486.1| pyridoxal phosphate enzyme, YggS family [Listeria ivanovii FSL
F6-596]
gi|313627548|gb|EFR96277.1| pyridoxal phosphate enzyme, YggS family [Listeria ivanovii FSL
F6-596]
Length = 229
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R + +V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACAESNREESNVTLVAVTKTIDATEMIELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D+ +IGSLQ+ KV +++ + + ++ R A + + ++ +
Sbjct: 61 FLDKTTQLADKNDICWHYIGSLQTRKVKDVLPQINYLHSLDRATLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + GLM + P + + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFS-REEALSFLQEANFQFIEIVGLMTMAPITNSEQELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|78358629|ref|YP_390078.1| hypothetical protein Dde_3590 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78221034|gb|ABB40383.1| Protein of unknown function UPF0001 [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 248
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 20/235 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKK 64
+L+ +++++++ + R ++ V+LVAVSK + + G +F E+ +QEA++K
Sbjct: 15 RLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGHAVFGESYVQEAQEK 74
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS--------REKTASLLSLEMIKQ 116
L + FIG +QS K ++ F ++ TV + +
Sbjct: 75 QQALAGLA-LSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQAVQPPDGEQPEGA 133
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDF-VILCRQKYQLNVEGLMCIPPAM---GNPKP 172
V +QVN G E QKSG+ L + GLMC+PP +P
Sbjct: 134 RTVQDVLVQVNIGCEPQKSGVAAGDGLLRLADAVAGMSGLRLRGLMCMPPLTCQGEEARP 193
Query: 173 HFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+F L + +L LSMGM+ DFE A+A GAT VR+G+ IFGER +
Sbjct: 194 YFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTDIFGERSPR 248
>gi|254522612|ref|ZP_05134667.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
gi|219720203|gb|EED38728.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
Length = 225
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 73/221 (33%), Positives = 104/221 (47%), Gaps = 11/221 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +A A RP L+AVSK ++ + + GQ F EN +QEA K
Sbjct: 5 LPQILSNLHAAAEAAGRP--DPRLLAVSKTQPAEAVAALAAQGQHAFGENYVQEALAKMQ 62
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ ++ IG LQSNK + S FD +++V R K + L+ L V IQV
Sbjct: 63 ALQHLA-LEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPATRGPLNVLIQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P++ + L + GLM IP P G + F + + +
Sbjct: 122 NIDDESSKHGCTPDEVDALAAAIAAEPGLRLRGLMAIPAPWPDAGRRRDAFVRMRTLFQA 181
Query: 184 C-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 182 LAAQHAQVDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|289435372|ref|YP_003465244.1| hypothetical protein lse_2011 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171616|emb|CBH28162.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 229
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R A + K
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRASLAKEIEKRATKLV--- 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEETKHGFS-KEEALSFLQEADFKYIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|330836418|ref|YP_004411059.1| hypothetical protein Spico_0449 [Spirochaeta coccoides DSM 17374]
gi|329748321|gb|AEC01677.1| protein of unknown function UPF0001 [Spirochaeta coccoides DSM
17374]
Length = 235
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++L ++ I L+ R ++L+AVSK + I A GQ IF EN++QE
Sbjct: 4 TLASRLAEARRTIREHVALSGRQDSDITLMAVSKTRPYETILEAYEAGQRIFGENRVQEI 63
Query: 62 KKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ P + ++L IG LQSNKV ++V L D I++V + A +S +++ R +
Sbjct: 64 VDKFPLPSERPTGMRLHLIGHLQSNKVRKVVPLVDAIDSVHSLRLAGQISCVAMERGRVM 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAM---GNPKPHFYL 176
P+ ++ NT E KSG + + + GLM I P + F
Sbjct: 124 PILLEYNTSGESSKSGFTTEDDLFSAVEAISSLGGVKIRGLMTIGPLEGDEDAVRRAFRR 183
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + EC + LSMGM+ D+ +A+ G+T VR+G+ +FG+R
Sbjct: 184 LRSLRDECIKRFPSQDFSVLSMGMSSDYPVAVEEGSTLVRLGTTLFGQR 232
>gi|315497178|ref|YP_004085982.1| alanine racemase domain protein [Asticcacaulis excentricus CB 48]
gi|315415190|gb|ADU11831.1| alanine racemase domain protein [Asticcacaulis excentricus CB 48]
Length = 221
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 2/216 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ + + L R S L AVSK + IR L G F EN++QEA +
Sbjct: 7 AENYARIVKGLHKTLKLTGRADGSACLTAVSKNQPWEVIRPVLEAGHRRFGENRVQEAME 66
Query: 64 KWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+W P + D+ L IG LQSNK ++ V+ FDV+E+V REK A ++ E KQ R V
Sbjct: 67 RWGPVKDQYPDLTLCLIGPLQSNKAADAVAFFDVVESVDREKIARAIADEAQKQGRAPRV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Y+QVN G E QK+GI+P +T F+ R GLMCIPP G P+F LL ++A
Sbjct: 127 YVQVNIGEEPQKAGILPAETDRFIATVRGYGLEPC-GLMCIPPVEGPRGPYFALLRKMAE 185
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE A+ G+ +R+G+ IFG R
Sbjct: 186 RNGIGHLSMGMSDDFETALRFGSNEIRVGTAIFGSR 221
>gi|295706359|ref|YP_003599434.1| hypothetical protein BMD_4254 [Bacillus megaterium DSM 319]
gi|294804018|gb|ADF41084.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
Length = 227
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q I + R ++ V L+AV+K V +K+ A+ G + EN+ +
Sbjct: 4 SVSENLEAVQQAIAEACKKVNRNREDVELIAVTKYVSTKRAAEAVDAGILHLGENRDEGL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + ++ FIGSLQ+ KV ++ D I ++ R A + + +
Sbjct: 64 LEKYESIGEK--ATWHFIGSLQTRKVKNVIDKVDYIHSLDRVSLAKEID---KRAGHRIK 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
++QVN E K G++ F+ + + V GLM + P + +
Sbjct: 119 CFVQVNVAEEQSKHGLVVEDVIPFIKSLEEFTNIQVVGLMTMAPHTDDESTLRSCFQGLK 178
Query: 182 R------ECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E L T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 179 KLQSRIQELNLPYAPCTELSMGMSNDYAIAIEEGATFIRLGTTLVGN 225
>gi|257870261|ref|ZP_05649914.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804425|gb|EEV33247.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 224
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V LVAV+K VDS+K R + G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRKASEVRLVAVTKSVDSEKTRKIIEAGVTDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +V FIG+LQ KV I++ D + K A + + ++ +
Sbjct: 62 EKKQQLADFPEVNWHFIGNLQRRKVKSIINEVDYFHALESLKLAQEIQ---KRAAKTIAC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+++VN E K GI P+ F+ + ++NV GLM + P + +F+ L E
Sbjct: 119 FVEVNISGEASKQGIAPDDVVSFIEELQPFDKINVIGLMTMAPLASSEAEQLHYFHQLKE 178
Query: 180 IARECKLTKL--------SMGMTRDFELAIASGATSVRIGSGIF 215
+ + L SMGM+ DF +AI +GAT VRIG+ +F
Sbjct: 179 LQEKIAALHLAHAPCTETSMGMSNDFAVAIQAGATVVRIGTALF 222
>gi|332187736|ref|ZP_08389471.1| alanine racemase, N-terminal domain protein [Sphingomonas sp. S17]
gi|332012302|gb|EGI54372.1| alanine racemase, N-terminal domain protein [Sphingomonas sp. S17]
Length = 219
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 84/215 (39%), Positives = 119/215 (55%), Gaps = 4/215 (1%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L ++ +A L + +L+AVSK D+ IR L G +F EN++QEA K
Sbjct: 7 SRLATVSTALQRAAKLG--DHATPTLIAVSKTHDADTIRPLLDAGHRVFGENRVQEAAAK 64
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W V+L IG LQSNK + V+LFDVI TV R + L+ M K + +
Sbjct: 65 WPALRADYPGVELHLIGQLQSNKAEDAVALFDVIHTVDRPSLIAGLAQAMDKSGKRPDCF 124
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QK G + ++ + L GLM IPP + P+F LL+++ARE
Sbjct: 125 LQVNIGEEEQKGGCAIAEV-PAMLAQARAAGLPTIGLMAIPPHGLDAAPYFALLAKMARE 183
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LTKLSMGM+ D+E+A GA+ VR+GS +FG R
Sbjct: 184 LGLTKLSMGMSEDYEVAAMLGASHVRVGSALFGAR 218
>gi|301763705|ref|XP_002917283.1| PREDICTED: LOW QUALITY PROTEIN: proline synthase co-transcribed
bacterial homolog protein-like [Ailuropoda melanoleuca]
Length = 305
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A S GQ F EN +QE +K
Sbjct: 47 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEK 106
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 107 ASNPKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLFMLETVDSVKLADKVNSSWQKKDSP 166
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +QVNT E K G++P++T V + L GLM I + P P
Sbjct: 167 EKLKVMVQVNTSGEESKHGLLPSETVAVVEHINTKCPSLEFVGLMTIGSFGHDLSQGPNP 226
Query: 173 HFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F +L + E +LSMGM+ DF+ AI G+T+VR+GS IFGER
Sbjct: 227 DFQVLLSLREELCAKLNVPTDQVELSMGMSADFQHAIEVGSTNVRVGSTIFGERDYS 283
>gi|281346889|gb|EFB22473.1| hypothetical protein PANDA_005479 [Ailuropoda melanoleuca]
Length = 273
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A S GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLFMLETVDSVKLADKVNSSWQKKDSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +QVNT E K G++P++T V + L GLM I + P P
Sbjct: 137 EKLKVMVQVNTSGEESKHGLLPSETVAVVEHINTKCPSLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F +L + E +LSMGM+ DF+ AI G+T+VR+GS IFGER
Sbjct: 197 DFQVLLSLREELCAKLNVPTDQVELSMGMSADFQHAIEVGSTNVRVGSTIFGERDYS 253
>gi|294495605|ref|YP_003542098.1| alanine racemase [Methanohalophilus mahii DSM 5219]
gi|292666604|gb|ADE36453.1| alanine racemase domain protein [Methanohalophilus mahii DSM 5219]
Length = 216
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++I +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 1 MPVDENIKRILEEI-----------GDKTLVCVTKTIEPERINEAIRAGATIIGENRVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG LQ+NKV V FDVI++V K + + +
Sbjct: 50 YEDKSEKILP---CETHLIGHLQTNKVKRAVEYFDVIQSVDSLKVINNIDTRAGDIDKVQ 106
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V++QVN G E QK G ++ K+ + R + VEGLMCIPP + +P+F +
Sbjct: 107 RVFLQVNIGNEPQKHGFRLDRIKEVINEIRSLQNIRVEGLMCIPPFVPAEQTRPYFQKMK 166
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + +LSMGM+ D+ +AI GAT VR+GS IFGER
Sbjct: 167 ALFDEMKQENGGNIDIQELSMGMSNDYMVAIEEGATMVRVGSAIFGERKY 216
>gi|119583765|gb|EAW63361.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_b [Homo sapiens]
gi|119583768|gb|EAW63364.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_b [Homo sapiens]
Length = 310
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 52 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 111
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 112 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGSP 171
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 172 ERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNP 231
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 232 DFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYS 288
>gi|6005842|ref|NP_009129.1| proline synthase co-transcribed bacterial homolog protein [Homo
sapiens]
gi|12230426|sp|O94903|PROSC_HUMAN RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|4126978|dbj|BAA36842.1| Proline synthetase associated [Homo sapiens]
gi|12052758|emb|CAB66551.1| hypothetical protein [Homo sapiens]
gi|15147391|gb|AAH12334.1| Proline synthetase co-transcribed homolog (bacterial) [Homo
sapiens]
gi|49065490|emb|CAG38563.1| PROSC [Homo sapiens]
gi|190689559|gb|ACE86554.1| proline synthetase co-transcribed homolog (bacterial) protein
[synthetic construct]
gi|190690923|gb|ACE87236.1| proline synthetase co-transcribed homolog (bacterial) protein
[synthetic construct]
Length = 275
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 76
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 137 ERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 197 DFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYS 253
>gi|302874635|ref|YP_003843268.1| alanine racemase domain-containing protein [Clostridium
cellulovorans 743B]
gi|307690753|ref|ZP_07633199.1| alanine racemase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577492|gb|ADL51504.1| alanine racemase domain protein [Clostridium cellulovorans 743B]
Length = 220
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 98/231 (42%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + +I +VA SK ++I A + G F ENK+QE
Sbjct: 1 MTIEENICALRNEI----------PKDTVIVAASKTRTLEEIEKAYNAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ D+ FIG LQSNKV +V +I ++ + + +
Sbjct: 51 FVEKYEKCNL--DINWHFIGHLQSNKVKYLVGKNVLIHSIDSIALLNEIEKKSQALGIET 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V IQVN E +K G + K+ + + V+GLM I P + +F +
Sbjct: 109 NVLIQVNIAKEQRKYGFYEEELKEVLKTVEGFTNIKVKGLMTILPIESHEENRKYFRKVK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+I E K + LSMGM+ D+ A+ G +R+G IFG+R
Sbjct: 169 DIFDEIKDINYINSEMKYLSMGMSSDYIDAVKEGTNMIRVGEAIFGKRNYN 219
>gi|91773052|ref|YP_565744.1| hypothetical protein Mbur_1062 [Methanococcoides burtonii DSM 6242]
gi|91712067|gb|ABE51994.1| pyridoxal 5'-phosphate-dependent-protein, UPF0001family
[Methanococcoides burtonii DSM 6242]
Length = 216
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ R LV V+K +D+++I ++ G I EN++QE
Sbjct: 1 MTVDENIKRIFNEL-------GRT----KLVCVTKTIDTERINESIRAGATIIGENRVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG+LQ+NKV + V LFDVI++V K + + ++
Sbjct: 50 FEDKCADILP---CERHLIGNLQTNKVKKAVHLFDVIQSVDSLKLIQDIDKKAKAINKVQ 106
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V++QVN G E QK G ++ + + ++V+GLMCIPP + +F +
Sbjct: 107 KVFLQVNIGNEPQKFGFGSDEIGQVITQIQSLKNVHVKGLMCIPPFVSPEQTRSYFKKMK 166
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + +LSMGM+ D+ +AI GAT VR+GS IFG R
Sbjct: 167 ALFDELKQVDQDNIDIQELSMGMSNDYRVAIEEGATMVRVGSAIFGNRKY 216
>gi|297626139|ref|YP_003687902.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921904|emb|CBL56464.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 250
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 19/237 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV--------ALSCGQVIFAEN 56
+++ + ++ A R V L+ VSK + +R A +F EN
Sbjct: 12 ERVRGVLAGVTDACERAGRDPARVRLLPVSKTHPIEAVRQVNGALERQAGHVPHRLFGEN 71
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+QE K LR + D IG LQSNKV+ + L D + + K A L +
Sbjct: 72 HVQEIVAKTDELRPDDDFGFALIGHLQSNKVNAVAGLIDEFQALDSLKLAGRLDRRLNTL 131
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
R L V ++VNT E K GI + +DF L V GLM + P
Sbjct: 132 GRGLRVLVEVNTSGEAAKHGIDVDDAQDFCRALADFDALTVAGLMTVAVNSPDRERVAAC 191
Query: 174 FYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L + + +LSMGM+ D+ LAI GAT+VR+G+ +FG R T
Sbjct: 192 FDRLVALQSRLRDDGVLGSDWAELSMGMSGDYPLAIEHGATTVRVGTALFGPRDYGT 248
>gi|297299225|ref|XP_001089087.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein [Macaca mulatta]
Length = 310
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 52 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 111
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 112 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSLKLADKVNSSWQKKGSP 171
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 172 ERLKVMVQINTSGEESKHGLPPSETIAVVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNP 231
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 232 DFQLLLSLRKELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSIIFGERDYS 288
>gi|158255706|dbj|BAF83824.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +Q +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQALLEK 76
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQRKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 137 ERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 197 DFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYS 253
>gi|291542657|emb|CBL15767.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus bromii L2-63]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + ++I +A + R ++ ++ +A +KMV+ + I A+S G ENK+QE
Sbjct: 8 DVEYNYKFIDERIAEAAEKSGRKREDITFLAATKMVEPEVINHAISLGLDHIGENKVQEL 67
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + + L+FIG LQ+NKV +I+ D+I++V K AS +S + +K ++
Sbjct: 68 LSKYDKYNLD-NCSLQFIGHLQTNKVRQIIDKVDLIQSVDSIKLASEISKQALKINKNCD 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V ++VN G E KSG+MP Q ++ + + ++V+GLM IPP + + +++
Sbjct: 127 VLVEVNIGREENKSGVMPEQLEELLCQIAELDGISVKGLMAIPPICESSQKISEFFNKMH 186
Query: 182 -----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+ A+ +GA VR+GS +FG R
Sbjct: 187 NIFIDISQKKLDNIDMNILSMGMSADYYEAVLAGANMVRVGSALFGARNY 236
>gi|281205000|gb|EFA79194.1| hypothetical protein PPL_08020 [Polysphondylium pallidum PN500]
Length = 278
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 84/234 (35%), Positives = 112/234 (47%), Gaps = 24/234 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K KI + +V+LVAVSK S IR G F EN +QE +
Sbjct: 52 LLERYNAIKSKITD---------PNVTLVAVSKTKPSFMIRELYENGHRHFGENYIQELE 102
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D++ FIGS+QSNK+ ++ S V+ETV + A + S+ L
Sbjct: 103 LKSKELEDLKDIKWHFIGSVQSNKIKQLGSVLNLAVVETVEKSSAADKFAKCFSNHSQPL 162
Query: 121 PVYIQVNTGYEIQKSGIMPNQT----KDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFY 175
+ +QVNT E KSG PN+ K + + K L GLM I P +P F
Sbjct: 163 EIMVQVNTSGEQSKSGCEPNEVVDIVKHIISDEQCKKSLKFSGLMTIGSPNATEDQPDFK 222
Query: 176 LLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E I+++ L LSMGM+ DF AI G+TSVR+GS IFGER
Sbjct: 223 KLFECRDSISKQLGLPIESIALSMGMSHDFVEAIKFGSTSVRVGSAIFGERDYS 276
>gi|254831727|ref|ZP_05236382.1| hypothetical protein Lmon1_10248 [Listeria monocytogenes 10403S]
Length = 229
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE+ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHVCEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + + ++ +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIE---KRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + F+ + + GLM + P + ++ E+
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFT-FIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|298346049|ref|YP_003718736.1| alanine racemase domain-containing protein [Mobiluncus curtisii
ATCC 43063]
gi|304390192|ref|ZP_07372146.1| YggS family pyridoxal phosphate enzyme [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298236110|gb|ADI67242.1| alanine racemase domain protein [Mobiluncus curtisii ATCC 43063]
gi|304326674|gb|EFL93918.1| YggS family pyridoxal phosphate enzyme [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 248
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 22/242 (9%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L Q++ +A A R +S+ ++ VSK +R AL+ G F ENK Q
Sbjct: 1 MSGFSQRLHDLSQRVAAAAATAGRDSESIRILPVSKTHPVADLREALAAGVSEFGENKPQ 60
Query: 60 EAKKKWIPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
E K L D + IG+LQ NK IV+ ++++ K A L+
Sbjct: 61 ELATKAAELGANLDLCADRNEVSPRWVQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLN 120
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + R L V I+VNT E K G+ P +T + L + +L++ GLM + +
Sbjct: 121 RLLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRV 180
Query: 171 -----KPHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+ + +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 181 GERGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 240
Query: 219 PC 220
Sbjct: 241 DY 242
>gi|20089382|ref|NP_615457.1| hypothetical protein MA0493 [Methanosarcina acetivorans C2A]
gi|19914277|gb|AAM03937.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 216
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++I S +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 1 MPVYENTKLILEEI-----------GSTTLVCVTKTIEPERINEAIRAGAPIIGENRVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG LQ+NKV + V LFDVI+++ K + +
Sbjct: 50 YEDKRDDILP---CETHLIGHLQTNKVKKAVHLFDVIQSIDSMKIIRDIDRRARDIGKVQ 106
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
VY+QVN G E QK G P++ K+ + R + VEGLMCIPP +P+F +
Sbjct: 107 KVYLQVNIGNEPQKYGFGPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRPYFKKMK 166
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ +AI GAT VR+GS IFG+R
Sbjct: 167 ALFDEMKQENRDNIDIRTLSMGMSGDYRIAIEEGATMVRVGSAIFGKREY 216
>gi|4455209|emb|CAB36532.1| putative Proline synthetase associated protein [Arabidopsis
thaliana]
gi|7269539|emb|CAB79541.1| putative Proline synthetase associated protein [Arabidopsis
thaliana]
Length = 262
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 34/252 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ + +A R + V ++ VSK IR G F EN +QE
Sbjct: 9 TVASALRSVILRARKAAEQVGRDAERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQS 117
+ D++ F+G LQSNK +++ + V + +
Sbjct: 69 ID--KAPQLPEDIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V +QVNT E+ KSGI P+ + + L GLM I P +
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 177 L-----------------------SEIARECKLTK----LSMGMTRDFELAIASGATSVR 209
+ +++ + + + LSMGM+ DFELAI G+T+VR
Sbjct: 187 VFYYLIGYLFYVFSGYSYKFYLPRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVR 246
Query: 210 IGSGIFGERPCQ 221
+GS IFG R
Sbjct: 247 VGSTIFGPREYP 258
>gi|113478239|ref|YP_724300.1| hypothetical protein Tery_4903 [Trichodesmium erythraeum IMS101]
gi|110169287|gb|ABG53827.1| Protein of unknown function UPF0001 [Trichodesmium erythraeum
IMS101]
Length = 226
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ K + SV L+AV+K V IR A + G F ENK+QEA
Sbjct: 4 SIAERITNIKSNL----------PKSVRLIAVTKQVSVDTIRTAYAAGIRDFGENKVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L+ D+ IG LQSNKV + + F I +V K A L+ +
Sbjct: 54 EAKQAQLQDLPDITWHLIGHLQSNKVVKALKQFQWIHSVDNLKLAKRLNALAEQFCYSPN 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QV + K G + + Q L ++GLM IPP + + +
Sbjct: 114 ICLQVKILPDPNKYGWTITELMSDLEELNQCQHLKIKGLMTIPPQGLDDLQTLSVFQKTK 173
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K +LSMGM+ D+ LAI++G T VR+G +FGER
Sbjct: 174 ELALEIREKNFSHLKTQELSMGMSEDYNLAISAGTTIVRLGRILFGER 221
>gi|33592437|ref|NP_880081.1| hypothetical protein BP1320 [Bordetella pertussis Tohama I]
gi|33601847|ref|NP_889407.1| hypothetical protein BB2871 [Bordetella bronchiseptica RB50]
gi|33572082|emb|CAE41614.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|33576284|emb|CAE33363.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|332381853|gb|AEE66700.1| hypothetical protein BPTD_1308 [Bordetella pertussis CS]
Length = 271
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 11/212 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A R V L+ VSK VD +IR++ + G ENK+QEA +KW + D++
Sbjct: 40 CQRAGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRKWEAMADLADLRWS 99
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ+NK + + + + A L + + R L VY+QVNT E K G+
Sbjct: 100 VIGHLQTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYVQVNTSGEASKYGL 159
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-----------SEIARECKL 186
P++ F+ L V GLM + + E L
Sbjct: 160 HPDEAAAFIRQLPSYGALRVRGLMTLAVLSADAARVRQCFVLLRTLRDRLRQEAPAGVSL 219
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+E+AI GAT VR+G I+G R
Sbjct: 220 DELSMGMSGDYEIAIEEGATVVRVGQAIYGAR 251
>gi|313900932|ref|ZP_07834422.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. HGF2]
gi|312954352|gb|EFR36030.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. HGF2]
Length = 216
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 26/231 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M KLQ ++ + D V+L+AVSK ++I A +CG +F ENK+QE
Sbjct: 1 MD-KKKLQEIQKHL----------PDHVTLIAVSKTHTKEEIDEAYACGCRVFGENKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ Q IG LQ NKV ++V L D+I+++ + A + + K + +
Sbjct: 50 LKEKYDDR-----YQWHMIGHLQRNKVKDVVPLADMIQSLDSLRLAEEIEKQCAKIDKIM 104
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
PV I+VN E K+G+ + FV C Q L+V+GLMC+ P + F +
Sbjct: 105 PVLIEVNISREANKTGVYMEECPAFVKQCMQYKHLDVQGLMCVGPLDADRDRIEECFERM 164
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + + + LSMGM+ D+ +A+ G+ +R+G+ IFG+R
Sbjct: 165 NILFHKLQSEYGSEQIRYLSMGMSDDYPIALKHGSNMIRLGTVIFGKRNYS 215
>gi|332878474|ref|ZP_08446195.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683569|gb|EGJ56445.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 223
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 19/226 (8%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ +I+ V LVAVSK I A + GQ +F E+ +QE ++K+
Sbjct: 3 QIQDEIKRITASL---PCGVRLVAVSKYHPESHIEEAYAAGQRVFGESHVQELRRKYD-- 57
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
D++ FIG LQ+NKV I +I V K + + K R +P +Q++
Sbjct: 58 NLPKDIEWHFIGHLQTNKVKYIAPYVAMIHAVDSMKLLLEIDKQGEKSGRVIPCLLQLHV 117
Query: 129 GYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIARE 183
E K G P++ ++ + + GLMC+ + + +E
Sbjct: 118 AKEETKFGFTPDECCKLVADGEWKKLAHVRIYGLMCMASNTDDMAQVRSEFHLAYALFKE 177
Query: 184 CK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
K + S GM+ D+ +AI G+T +R+GS IFGER
Sbjct: 178 LKTGAFANAPYFKECSWGMSHDYPIAIEEGSTLIRVGSKIFGERVY 223
>gi|213403758|ref|XP_002172651.1| alanine racemase [Schizosaccharomyces japonicus yFS275]
gi|212000698|gb|EEB06358.1| alanine racemase [Schizosaccharomyces japonicus yFS275]
Length = 240
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 21/233 (9%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L ++L + ++ +A R V LVAVSK + + A + GQ F EN +
Sbjct: 1 MTTPLQSRLAQVQGHVKAAAQ--GRD---VRLVAVSKFHPVESLMEAYNAGQRHFGENYM 55
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-- 116
QE DV FIG++QS+K +I S+ ++ + + + ++
Sbjct: 56 QELLA--KAQVMPKDVNWHFIGAMQSSKCKKIASIENLWCIETVDTEKKARLINSAREEL 113
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPA----MGNPK 171
++ L VY+QVNT E KSG+ P + L ++G+M I
Sbjct: 114 NKPLRVYVQVNTSGEDNKSGVAPEDALPLCKFIKDSCSHLQLQGIMTIGSFTNSLNEKTN 173
Query: 172 PHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F L ++ ++ + ++SMGM+ D+ELAI G+ +VR+G IFGERP
Sbjct: 174 PDFEKLIQLRKQLENDLSCKLEVSMGMSADYELAIQYGSDNVRVGRTIFGERP 226
>gi|219129146|ref|XP_002184757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403866|gb|EEC43816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 250
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 26/243 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ + +I+ + + LVAVSK + ++ A G +F EN QE
Sbjct: 10 DVARNLRDVQDQIDQACRTHAIESTRIRLVAVSKTKPIELLQQAYDAGCRVFGENYAQEL 69
Query: 62 KKK----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-----------DVIETVSREKTA 106
K V FIG LQSNK + ++ F ++
Sbjct: 70 ADKVPLLNQHDGNNDTVSWHFIGGLQSNKCNMLLKPFLEQAPNGPTVANLTIETVATVKL 129
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP 165
+ + + + L +++QVNT E KSGI P + ++ +L ++GLM I
Sbjct: 130 ANKLNHAVPEPQTLKIFVQVNTSGEDSKSGIEPAECVALCRHVAQECPRLQLQGLMTIGA 189
Query: 166 AMGNPKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F +L ++ R+ + +LSMGM+ DF AIA+GAT+VR+GS IFG
Sbjct: 190 VGDLS--CFDVLVDLRRKVAIALERDTDDLELSMGMSGDFVQAIAAGATNVRVGSTIFGA 247
Query: 218 RPC 220
R
Sbjct: 248 RNY 250
>gi|332522624|ref|ZP_08398876.1| pyridoxal phosphate enzyme, YggS family [Streptococcus porcinus
str. Jelinkova 176]
gi|332313888|gb|EGJ26873.1| pyridoxal phosphate enzyme, YggS family [Streptococcus porcinus
str. Jelinkova 176]
Length = 223
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +++ + I A R ++SV +VAV+K VD L G AEN++ +
Sbjct: 1 MNLEQNKKTIFEQVHKACIAADRLEESVKVVAVTKHVDISTASALLDNGVKHLAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IGSLQ KV ++++ D + A + + +
Sbjct: 61 FLEKYDA-LKDRDVTWHLIGSLQRRKVKDVINRVDYFHALDSLNLAKEIQK---RADHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G P++ + + ++ + GLM + P + + +
Sbjct: 117 NCFLQVNISGEKSKHGFSPDEVNLVLPQIAELNKIRLVGLMTMAPLDADSEIIHDIFEQA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + T+LSMGM+ D+E+AI GAT VRIG+ F
Sbjct: 177 KQLRQELQQQDRKNMPFTELSMGMSNDYEIAIQHGATFVRIGTSFF 222
>gi|311742793|ref|ZP_07716602.1| YggS family pyridoxal phosphate enzyme [Aeromicrobium marinum DSM
15272]
gi|311314421|gb|EFQ84329.1| YggS family pyridoxal phosphate enzyme [Aeromicrobium marinum DSM
15272]
Length = 234
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 16/234 (6%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS L L+ + +I+ + A R + ++LV V+K + + + G EN
Sbjct: 1 MSRREELAAGLRAVEARIDAACAGAGRRRADITLVVVTKTHPASDVEILADLGVRHVGEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA +K + D+ F+G++Q+NK + DV+ +V R K + LS +
Sbjct: 61 RHPEAGRKAEEVAA--DLTWHFLGAVQTNKAGAVTRYADVVHSVDRPKLVASLSRGAVAA 118
Query: 117 SRFLPVYIQV-----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
R L +QV + +SG +P + + L L ++G+M + P
Sbjct: 119 GRELGALVQVDLGPAHGQESDGRSGALPAEVERLAALVADAEGLRLDGVMTVAPLGVPAL 178
Query: 172 PHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L EIA T +S GM+ D E A+A+GAT +R+G I GERP
Sbjct: 179 GVFDDLREIAEAVRRDHPGATTISAGMSADLEQAVAAGATHLRVGRSILGERPA 232
>gi|66524764|ref|XP_623518.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Apis mellifera]
Length = 248
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 106/245 (43%), Gaps = 28/245 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L L++ K KI ++ R + LVAVSK+ + I A GQ F EN +
Sbjct: 4 LIANLKLVKNKITIASAR--RSPEYKYFEPRLVAVSKLKPVELIVDAYKAGQRHFGENYV 61
Query: 59 QEAKKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------ 109
E +K ++ FIG LQ NKV++++S+ ++ S +
Sbjct: 62 NELLEKGNDPIILETCTNIHWHFIGHLQRNKVNKLLSVPNLYVIESIDNEKLASAVNTSW 121
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA-- 166
++ L V +QVNT E +K+G V L GLM I
Sbjct: 122 INYRKDENLKLKVMVQVNTSKEQEKNGCEITNVCPLVQHIIANCKNLEFIGLMTIGMFGY 181
Query: 167 --MGNPKPHFYLLSEIA----RECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F L E ++ + +LSMGM+ D+E A+ G+T+VR+G+ IFG
Sbjct: 182 DYSKEPNPDFLCLKECRENVSKQLDIDLKQIELSMGMSNDYEHAVELGSTNVRVGTAIFG 241
Query: 217 ERPCQ 221
ERP +
Sbjct: 242 ERPKK 246
>gi|16332078|ref|NP_442806.1| hypothetical protein slr0556 [Synechocystis sp. PCC 6803]
gi|1723173|sp|P52056|Y556_SYNY3 RecName: Full=UPF0001 protein slr0556
gi|1001387|dbj|BAA10877.1| slr0556 [Synechocystis sp. PCC 6803]
Length = 218
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 94/203 (46%), Gaps = 9/203 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV LVAV+K I A G FAE+++QEA K L D+ FIG LQS
Sbjct: 15 PPSVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQS 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK ++V F I +V A L + ++F +Q+ + KSG + K
Sbjct: 75 NKARKVVENFTYIHSVDNLAIAVKLDRIAEELNKFPQGLLQIKLLPDENKSGWTREELKL 134
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTR 195
+ L + GLM I P +P E+ LT+LSMGM+
Sbjct: 135 DLPQLELLKNLKICGLMTILPLGLSPGDRQLTFGELKNLATAINQQSSLSLTELSMGMSG 194
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ AIA+GAT +R+G+ +FG+R
Sbjct: 195 DYPEAIAAGATMIRLGTILFGDR 217
>gi|329960818|ref|ZP_08299124.1| pyridoxal phosphate enzyme, YggS family [Bacteroides fluxus YIT
12057]
gi|328532419|gb|EGF59220.1| pyridoxal phosphate enzyme, YggS family [Bacteroides fluxus YIT
12057]
Length = 221
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PEGVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ FIG LQ+NK+ IV +I V K ++ + K R +
Sbjct: 52 AKYES--LPKDIEWHFIGHLQTNKIKYIVPYVALIHGVDSYKLLVEINRQAAKMGRTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q++ E K G + ++ + + + GLM + N + +
Sbjct: 110 LLQLHIAREETKFGFSFEECREMLASGEWKDLAHVRICGLMGMATNTDNTEQIKAEFCSL 169
Query: 181 ------------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A E +LSMGM+ D+ AI +G+T +R+GS IFGER
Sbjct: 170 DSFFQEVKSSWFAHEESFRELSMGMSHDYHEAIDAGSTLIRVGSRIFGERNY 221
>gi|19114789|ref|NP_593877.1| alanine racemase (predicted) [Schizosaccharomyces pombe 972h-]
gi|74625289|sp|Q9P6Q1|YKC9_SCHPO RecName: Full=UPF0001 protein C644.09
gi|7708588|emb|CAB90136.1| alanine racemase (predicted) [Schizosaccharomyces pombe]
Length = 237
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 117/232 (50%), Gaps = 19/232 (8%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L + + +I+ SA R V LVAVSK + + A + GQ F EN +Q
Sbjct: 1 MSTIHSCLDLIRSQIQQSA--NGRN---VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQ 55
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQS 117
E KK DVQ FIGSLQS+K +I V IET+ EK A L++
Sbjct: 56 EFLKKVE--LMPDDVQWHFIGSLQSSKCKKIASVKNLYSIETIDTEKKARLVNSAREALQ 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----NPKPH 173
L VYIQVNT E K G+ P++ + + L ++GLM I + P
Sbjct: 114 LPLNVYIQVNTSGEENKGGVTPSKVLELCKQVQDMKYLRLKGLMTIGSISNSQLSDHNPD 173
Query: 174 FYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F +LS++ + +LSMGM+ D+ LAI G+ SVR+GS IFG RP
Sbjct: 174 FQVLSDLRESLQNELGIPLQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPT 225
>gi|323140383|ref|ZP_08075313.1| pyridoxal phosphate enzyme, YggS family [Phascolarctobacterium sp.
YIT 12067]
gi|322415139|gb|EFY05928.1| pyridoxal phosphate enzyme, YggS family [Phascolarctobacterium sp.
YIT 12067]
Length = 233
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSA-ILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + L+ +++I ++ + D+V+LVAV+K + I + G EN++
Sbjct: 2 LADNLKQVQEQIASALDKRKNKDLLTGDNVTLVAVTKNHPPEIITNIEALGIANVGENRV 61
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEAK K IG LQ+NK + V+LFD+IE+V E + + E + +
Sbjct: 62 QEAKHKQEA--LGKHGYWHLIGHLQTNKARQAVALFDLIESVDSEHLLAAIDKEAERIGK 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH----- 173
+ +Q+N +E QKSG+ + + + + GLM I + +
Sbjct: 120 VQDILLQLNIAHEEQKSGLDKEDYLALLPKLPEYKHVRLRGLMVIAQKCEDIEQTRPVFA 179
Query: 174 --FYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + ++ + LSMGM+ D+ +AI GA VR+G+ +FG+R
Sbjct: 180 AGYRAFARLKQQYPQADILSMGMSNDYTVAIEEGANIVRVGTALFGQRDYS 230
>gi|148244385|ref|YP_001219079.1| hypothetical protein COSY_0225 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326212|dbj|BAF61355.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 212
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/216 (35%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + +I SV+LVAVSK +++ A+ GQ FAEN LQEA
Sbjct: 2 IKDNLIKVQLRISQV-----NHTQSVTLVAVSKTRSVYELQQAIDVGQQHFAENYLQEAL 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K K ++ FIG +QSNK +I FD + ++ R K A L+ + K L V
Sbjct: 57 IKI-NHLKGQNLIWHFIGPIQSNKTLKIAKNFDWVHSIGRLKIAQRLNDQRPKNLPKLKV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+N E KSG++ Q + + L + G MC+P + + + + I +
Sbjct: 116 LLQINIDNEPTKSGVLVGQIDELITHFESLKNLTLRGFMCVPNPFSSAQSFSRMENIIKQ 175
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D ELAI +GATSVRIG+ IFG+R
Sbjct: 176 YSNLDVLSMGMSHDLELAIENGATSVRIGADIFGKR 211
>gi|149195666|ref|ZP_01872723.1| hypothetical protein LNTAR_17278 [Lentisphaera araneosa HTCC2155]
gi|149141128|gb|EDM29524.1| hypothetical protein LNTAR_17278 [Lentisphaera araneosa HTCC2155]
Length = 464
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 10/226 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ I SA +R + L+ V+K + KI GQ FAEN++QE K
Sbjct: 241 QRYDNVLNDIAESAKKHQRDMTDIQLLTVTKNHPADKIFALYKHGQNEFAENRVQELLTK 300
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
D+ IG LQSNKV + V + I +V A + ++ + + ++I
Sbjct: 301 AES--LPQDIHWHLIGPLQSNKVRQAVKVAKTIHSVDNTSLAKRIDRIAEEEGKQIDIFI 358
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
Q+N EIQKSGI + +I C + +N+ GLM + P + + + + E+ +
Sbjct: 359 QLNLTGEIQKSGISTLSLEKLLISCSELKNINLIGLMTMGPLSASKEENLKVFKELKEQS 418
Query: 185 --------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGM+ DF+ AI G+ +RIGS I G R +T
Sbjct: 419 VEHSKYFENDVKLSMGMSGDFDEAIECGSHILRIGSAIMGTRTYET 464
>gi|295839436|ref|ZP_06826369.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. SPB74]
gi|197698751|gb|EDY45684.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. SPB74]
Length = 244
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 16/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVEQAGENRDQEAA 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + FIG LQ+NK + + +V R + A L ++ R L
Sbjct: 71 PKAAACADL-PLTWHFIGQLQTNKARSVARYASYVHSVDRARLAEALGAAAAREGRELGA 129
Query: 123 YIQV------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV + + G P + + L GLM + P G+P+
Sbjct: 130 LVQVALDAEGDPAAHAGRGGAHPEEVPALMDRIAATEGLRPAGLMTVAPLAGRYAGDPRA 189
Query: 173 HFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+E+A + T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 190 AFTRLAELASLVRATHPAATMVSAGMSGDLEAAIAAGATHVRIGSAILGTRSP 242
>gi|319901735|ref|YP_004161463.1| alanine racemase domain protein [Bacteroides helcogenes P 36-108]
gi|319416766|gb|ADV43877.1| alanine racemase domain protein [Bacteroides helcogenes P 36-108]
Length = 222
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAKNLKQILSEL----------PEGVQLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ FIG LQSNK+ IV +I + K + ++ + K +R +
Sbjct: 52 AKYES--LPKDIEWHFIGHLQSNKIKYIVPYVALIHGIDSYKLLAEVNKQAAKMNRTVDC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q++ E K G ++ ++ + K + + GLM + N + +
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLSSGGWKKLGNIRICGLMGMATNTDNAEQIKAEFCSL 169
Query: 181 ---ARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E K +LSMGM+ D+ AIA+G+T +R+GS IFGER Q
Sbjct: 170 ESFFHEVKSTWFPDEGSFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNYQ 222
>gi|257455743|ref|ZP_05620971.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
SK60]
gi|257446871|gb|EEV21886.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
SK60]
Length = 241
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 101/227 (44%), Gaps = 17/227 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q K + R +V L+AVSK + IR GQ F EN +QEA
Sbjct: 22 LIARWQQVKTDVA-------RLNPTVKLLAVSKTKPNWMIRTLAQQGQQDFGENYVQEAV 74
Query: 63 KKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K E + +IG +Q NK E+ + FD + V R A L+ + +
Sbjct: 75 AKIAALKDVTANEQPLVWHYIGHIQRNKTKELAAHFDWVHGVDRLIIAQRLNEQRAEHLA 134
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPHFYLL 177
L + I+VN E KSG PNQ + V Q L + GLM IP + L
Sbjct: 135 PLNICIEVNIDDEASKSGCQPNQLPELVTEISQLPNLQLRGLMIIPAKNSSSAFVKTQQL 194
Query: 178 SEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E + + LSMGM+ D E AIA+GAT VRIG+ IFG R
Sbjct: 195 FEQNKRYHAHPEQWDTLSMGMSGDIEQAIAAGATIVRIGTAIFGARD 241
>gi|325571370|ref|ZP_08146870.1| cell division protein YlmE [Enterococcus casseliflavus ATCC 12755]
gi|325155846|gb|EGC68042.1| cell division protein YlmE [Enterococcus casseliflavus ATCC 12755]
Length = 223
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V L AV+K VD++ R L G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRNTSEVCLTAVTKSVDTETTRELLENGVRDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L DV+ FIG+LQ KV +++ D + K A + + +
Sbjct: 62 EKKAALTDYPDVRWHFIGNLQRRKVKSVINEIDFFHALDSIKLAQEIQ---KRAEHPINC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++VN E K GI + F+ ++ V GLM + P + + E+ R
Sbjct: 119 FVEVNVSQEATKQGIFVEEVVAFIEALASFDKIRVVGLMTMAPLTASKDEQHQIFKELKR 178
Query: 183 ------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LT + SMGM+ DF +AI GAT +R+G+ +F
Sbjct: 179 IQQQIADLHLTHAPCLETSMGMSNDFPIAIQEGATFIRVGTALF 222
>gi|332825856|ref|XP_001169823.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein isoform 1 [Pan troglodytes]
Length = 310
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 52 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGYGQRTFGENYVQELLEK 111
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 112 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQKKGSP 171
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 172 ERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNP 231
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 232 DFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYS 288
>gi|114619661|ref|XP_528110.2| PREDICTED: proline synthetase co-transcribed homolog isoform 2 [Pan
troglodytes]
Length = 275
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGYGQRTFGENYVQELLEK 76
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 137 ERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 197 DFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYS 253
>gi|289670426|ref|ZP_06491501.1| hypothetical protein XcampmN_18558 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 230
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A R V L+AVSK ++ + + GQ F EN +QEA+
Sbjct: 3 ASSLQQILDAIHAAAAAHART--DVRLLAVSKTKPAEAVAGLAAQGQRAFGENYVQEAEA 60
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR ++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 61 KIAQLRAL-GLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVL 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQ+N E K G P + +L + GLM IP P + F + +
Sbjct: 120 IQLNIDDEDSKHGCAPEAIDSLAEAIALQPRLQLRGLMAIPAPFPEQARRQAAFTRMQAL 179
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 180 FEQLKTRHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGAR 222
>gi|312863618|ref|ZP_07723856.1| pyridoxal phosphate enzyme, YggS family [Streptococcus vestibularis
F0396]
gi|322517033|ref|ZP_08069921.1| cell division protein YlmE [Streptococcus vestibularis ATCC 49124]
gi|311101154|gb|EFQ59359.1| pyridoxal phosphate enzyme, YggS family [Streptococcus vestibularis
F0396]
gi|322124401|gb|EFX95901.1| cell division protein YlmE [Streptococcus vestibularis ATCC 49124]
Length = 228
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 2 MTIEDNKNGIYQAVKKACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K++D+ IGSLQ KV ++++L D + K A + + +
Sbjct: 62 FLDKYQA-LKKYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAEEIQ---KRADHTI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G P + + ++ + GLM + P N + + +E
Sbjct: 118 NCFLQVNVSGEESKHGFPPEELDTVLNHIENLDKICIVGLMTMAPIDANAQELDKIFAET 177
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM+RD+++AI +G+T VRIGS F
Sbjct: 178 NELRQSIQDKKIKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFF 223
>gi|72161519|ref|YP_289176.1| hypothetical protein Tfu_1115 [Thermobifida fusca YX]
gi|71915251|gb|AAZ55153.1| Protein of unknown function UPF0001 [Thermobifida fusca YX]
Length = 240
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++++ + A R + +++VAV+K + +R+ G EN+ QEA
Sbjct: 10 LAANLERVRERVAAACAAAGRKPEEITIVAVTKQYPASDVRLLAELGIRDIGENRDQEAA 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R D+ F+G LQ+NK + DV+ +V R + + L + R +
Sbjct: 70 PKAAECRDL-DLTWHFVGQLQTNKARSVARYADVVHSVDRMRLVTELGRRVRAAERTVTC 128
Query: 123 YIQVNTGYEIQK------SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
IQVN + ++ G P + L + G+M + P G+P+ F
Sbjct: 129 LIQVNLDPDSEQGVLGPRGGADPGDVPALAEAVEAEEGLALGGVMAVAPRQGDPREAFDR 188
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A E + T +S GM+ D E AI GAT +RIG+ + G R
Sbjct: 189 LKTVAEELQARYPHATVISAGMSGDLEAAIERGATHLRIGTALLGNR 235
>gi|291543956|emb|CBL17065.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus sp. 18P13]
Length = 229
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +I + ++P++ V L+AV+K VD + VA+ CG + EN++QE +
Sbjct: 8 VRENYKRITDRIGEAMAKYRKPEEQVQLMAVTKTVDPALVNVAVECGVRLLGENRVQEYE 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K Q++FIG LQ+NKV ++ +I++V A+ + + + +
Sbjct: 68 SKKAQYDPR--AQVQFIGQLQTNKVKYLIPEISMIQSVDSLHLANEVERIAARADKVQDI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN G E K GI + + +K L+V GLM IPP +F+ + ++
Sbjct: 126 LLEVNIGGEESKGGIPAEELHGLLEEAARKPHLHVCGLMTIPPKTDVE-KYFFRMQKLFI 184
Query: 182 -------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ AI G+T VRIGS +FG R
Sbjct: 185 DISAENMDNIDMHVLSMGMSGDYVEAIKYGSTLVRIGSALFGAR 228
>gi|315654634|ref|ZP_07907540.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
gi|315491098|gb|EFU80717.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
Length = 247
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 21/241 (8%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L Q++ +A A R +S+ ++ VSK +R AL+ G F ENK Q
Sbjct: 1 MSGFSQRLHDLSQRVAAAAATAGRDSESIRILPVSKTHPVTDLREALAAGVSEFGENKPQ 60
Query: 60 EAKKKWIPLRKEWD--------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E K L + IG+LQ NK IV+ ++++ K A L+
Sbjct: 61 ELATKAAELGANLGLCADGSASPRWIQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLNR 120
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
+ + R L V I+VNT E K G+ P +T + L + +L++ GLM + +
Sbjct: 121 LLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHVDRVG 180
Query: 171 ----KPHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L+ + +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 181 ERGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPRD 240
Query: 220 C 220
Sbjct: 241 Y 241
>gi|269792874|ref|YP_003317778.1| alanine racemase domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100509|gb|ACZ19496.1| alanine racemase domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 235
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + IE +A R V +VAV+K + +R A G I EN++QEA
Sbjct: 7 VRDNLAAAMEAIERAAGSVGRDPGEVRVVAVTKNHPPQAVRAAAQAGIRIVGENRVQEAM 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLP 121
+K L+ DVQ IG LQ NKV + + F + TV + AS L+ +++ P
Sbjct: 67 EKRRELQDL-DVQWIMIGHLQRNKVRKALETFHQVHTVDSLELASSLNRVLMETPDARCP 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN E K G+ P+ + + + +L + GL + P + + + +
Sbjct: 126 VLMEVNISGEASKHGVSPDLAQPLGEMILSRCERLELRGLFGVGPLVDDQARIRASFASL 185
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R L +LSMGM+ D+ LA+ G+T VR+G+ +FG R
Sbjct: 186 RRLRDQLEAALGIHLPELSMGMSSDYPLAVMEGSTMVRLGTCLFGPR 232
>gi|258649210|ref|ZP_05736679.1| pyridoxal phosphate enzyme, YggS family [Prevotella tannerae ATCC
51259]
gi|260850475|gb|EEX70344.1| pyridoxal phosphate enzyme, YggS family [Prevotella tannerae ATCC
51259]
Length = 223
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 93/235 (39%), Gaps = 27/235 (11%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L+ + I V LVAVSK +IR GQ F E+ Q
Sbjct: 1 MSAIQTRLECVRATI----------PHEVDLVAVSKFHPIAEIRDCYELGQRCFGESHEQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K D+ FIG LQ+NKV I +IE V + ++ K +R
Sbjct: 51 ELRIKQEE--LPKDIAWHFIGHLQANKVKYIAPYIFMIEAVDTFRLLKEINKHAAKHNRI 108
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ ++V+ E K G P + + + + GLMC+ +
Sbjct: 109 IDCLLEVHIAQEETKYGFTPEACRQLLADGEWKALKHIRLRGLMCMATNTDDTSQIRREF 168
Query: 178 S---EIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ E K S GMT D++LAI G+ +R+G+ IFG R
Sbjct: 169 QLALQLFEELKSTYFSDKDYFNVKSWGMTHDYKLAIEEGSNHIRVGTAIFGPRTY 223
>gi|21227777|ref|NP_633699.1| hypothetical protein MM_1675 [Methanosarcina mazei Go1]
gi|20906182|gb|AAM31371.1| conserved protein [Methanosarcina mazei Go1]
Length = 225
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ +KI S +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 10 MPVYENTKLILEKI-----------GSTTLVCVTKTIEPERINEAIRAGATIIGENRVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG LQ+NKV + V LFDVI+++ K + + +
Sbjct: 59 YEDKRDDILP---CETHLIGHLQANKVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQ 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
VY+QVN G E QK G P++ K+ + R + VEGLMCIPP + +F +
Sbjct: 116 RVYLQVNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRSYFRKMK 175
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ +AI GAT VR+GS IFG+R
Sbjct: 176 ALFDEIKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY 225
>gi|297184144|gb|ADI20263.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 218
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 10/216 (4%)
Query: 13 KIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I+++ + ++ V LVAVSK + + A GQ F ENK+QE K + K
Sbjct: 3 RIQSALTTVRASLQEGVQLVAVSKTKPVELLFEAYEAGQRDFGENKVQEMALKAEAMPK- 61
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++ IG +Q+NK+ + ++ V REK L K R + +QV+ E
Sbjct: 62 -DIRWHMIGHVQTNKIKYMAPFVHMVHGVDREKVLRELDKHAKKVDRTINCLLQVHIAQE 120
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-------AREC 184
K G + ++ + + V GLM + N S + A++
Sbjct: 121 ETKFGWSIAELEEVLPTLSVYSNIKVCGLMGMASNTDNKDQIGKEFSGLSNFYNAHAQKQ 180
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS+GM+ D+ +A+A GAT VRIGS IFG R
Sbjct: 181 GWNTLSIGMSGDYTIAMAHGATHVRIGSSIFGARTY 216
>gi|283778808|ref|YP_003369563.1| alanine racemase domain-containing protein [Pirellula staleyi DSM
6068]
gi|283437261|gb|ADB15703.1| alanine racemase domain protein [Pirellula staleyi DSM 6068]
Length = 244
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R V LVAV+K V ++ S GQ+ E++ Q+
Sbjct: 11 LERNLLQVQARIASACERAGRAPRDVRLVAVTKYVSAEIAAEIASLGQIDLGESRPQQIW 70
Query: 63 KKWI-----PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K P ++ IG LQ NK+ + L D++ + K L E K
Sbjct: 71 EKQPILASDPRLAAQPIRWHMIGPLQRNKIRRTLPLVDLLHSGESLKLLESLDEEAAKAG 130
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V ++VN + K G ++ + L ++GLM + G L
Sbjct: 131 LTSHVLLEVNLSGDTTKHGFRADELPALLPQLTALTHLRIDGLMTMAALEGTLDDAQRLF 190
Query: 178 SEIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+++ +L +LSMGM+ DFE AI GAT VR+GS +
Sbjct: 191 AQLRAVRDKLREQSAGALELPELSMGMSDDFERAILEGATLVRVGSAL 238
>gi|198275265|ref|ZP_03207796.1| hypothetical protein BACPLE_01424 [Bacteroides plebeius DSM 17135]
gi|198271848|gb|EDY96118.1| hypothetical protein BACPLE_01424 [Bacteroides plebeius DSM 17135]
Length = 222
Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + ++ VSLVAVSK ++ I A GQ IF E+K QE
Sbjct: 1 MDIQSNLKEVRAQL----------PPQVSLVAVSKFHPNEAILAAYETGQRIFGESKEQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK D+Q FIG LQ+NKV I +I V K + + + K +R +
Sbjct: 51 LSKKQAS--LPADIQWHFIGHLQTNKVKYIAPYIAMIHAVDSYKLLAEIDKQAAKCNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFYLLS 178
P ++++ E K G ++ + K + + G+M + +
Sbjct: 109 PCLLEIHIAEEESKYGFSFEACREMLETTPWKELTHVCISGVMGMATNTDDESQIINEFE 168
Query: 179 EIAR---ECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ R E K ++SMGM+ D+ LA+ +G+T VR+GS IFG+R
Sbjct: 169 SLHRFFTELKATYFKDCDTFKEISMGMSHDYMLAVQAGSTMVRVGSKIFGDRVY 222
>gi|289664572|ref|ZP_06486153.1| hypothetical protein XcampvN_16238 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 230
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A R V L+AVSK ++ + + GQ F EN +QEA+
Sbjct: 3 ASSLQQILDAIHAAAAAHART--DVRLLAVSKTKPAEAVAGLAAQGQRAFGENYVQEAEA 60
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR ++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 61 KIAQLRAL-GLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVL 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQ+N E K G P + +L + GLM IP P + F + +
Sbjct: 120 IQLNIDDEDSKHGCAPEAIDSLAEAIALQPRLQLRGLMTIPAPFPEQARRQAAFTRMQAL 179
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 180 FEQLKTRHRQVDTLSMGMSADFAEAIAAGATMVRVGTALFGAR 222
>gi|57097863|ref|XP_539969.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Canis familiaris]
Length = 275
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPVEMVIEAYCHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +QVNT E K G++P++T V + L GLM I + P P
Sbjct: 137 ERLKVMVQVNTSGEQSKHGLLPSETVSMVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F +L + E KL+ +LSMGM+ DF+ AI G+T+VR+GS IFGER
Sbjct: 197 DFQVLLSLREELCKKLSVPPEQVELSMGMSMDFQHAIEVGSTNVRVGSTIFGERDYS 253
>gi|302533947|ref|ZP_07286289.1| alanine racemase domain-containing protein [Streptomyces sp. C]
gi|302442842|gb|EFL14658.1| alanine racemase domain-containing protein [Streptomyces sp. C]
Length = 239
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERIASACAAAGREREEVTLIVVTKTYPASDVRLLADLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + V+++V R K + LS Q R L
Sbjct: 68 PKAAACSDL-PLSWHFVGQLQTNKVRSVAGYAQVVQSVDRPKLVTALSAAAEAQGRELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+Q+ +G + G P+ + L L ++GLM + P G + F
Sbjct: 127 LVQIALDAESGERGARGGAAPDLMAELADLVAAAPGLRIDGLMTVAPLAGPYAGREQAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ E++ + T +S GM+ D E A+ +GAT VR+G+ + G RP
Sbjct: 187 ERMMELSSSLREAHPAATMVSAGMSADLEQAVLAGATHVRVGTAVLGARP 236
>gi|302518523|ref|ZP_07270865.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
gi|318057558|ref|ZP_07976281.1| hypothetical protein SSA3_06454 [Streptomyces sp. SA3_actG]
gi|318078778|ref|ZP_07986110.1| hypothetical protein SSA3_19183 [Streptomyces sp. SA3_actF]
gi|302427418|gb|EFK99233.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
Length = 244
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 16/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVGQVGENRDQEAG 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + FIG LQ+NK + + +V R + A+ L +++ R +
Sbjct: 71 PKAAECADL-PLTWHFIGQLQTNKAKSVARYASYVHSVDRARLAAPLGAAAVREGREIGA 129
Query: 123 YIQV------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV + + G P++ + V L GLM + P G+ +
Sbjct: 130 LVQVALDAEGDPAAHAGRGGAHPDEVPELVDRIAATEGLRPAGLMTVAPLAGRYAGDARA 189
Query: 173 HFYLLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+E+A T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 190 AFARLAELASLVRAAHPAATMVSAGMSGDLEEAIAAGATHVRIGSAILGTRSP 242
>gi|260574451|ref|ZP_05842455.1| alanine racemase domain protein [Rhodobacter sp. SW2]
gi|259023347|gb|EEW26639.1| alanine racemase domain protein [Rhodobacter sp. SW2]
Length = 215
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 83/192 (43%), Positives = 110/192 (57%), Gaps = 2/192 (1%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNK 86
V L+AVSK+ ++ L G +F EN +QEA+ KW LR + VQ+ IG LQ+NK
Sbjct: 24 VQLIAVSKVQPLTRVVAVLEQGHRLFGENYVQEAQGKWPDLRARFGAVQVHMIGPLQTNK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V LFD I T+ R A L+ + +++QVNTG E QK+G++P F+
Sbjct: 84 AKVAVDLFDAIHTLDRPSLAEKLARLAQDRGTCPQLFVQVNTGAEPQKTGVLPADADAFI 143
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
+ L + GLMCIPP + PHF L+ IA L LSMGM+ DFE AIA+GAT
Sbjct: 144 -ATCRAMDLPLAGLMCIPPEGTDSTPHFTELAAIAARNGLAGLSMGMSSDFEAAIAAGAT 202
Query: 207 SVRIGSGIFGER 218
VR+GS IFG R
Sbjct: 203 HVRVGSAIFGAR 214
>gi|257056711|ref|YP_003134543.1| pyridoxal phosphate enzyme, YggS family [Saccharomonospora viridis
DSM 43017]
gi|256586583|gb|ACU97716.1| pyridoxal phosphate enzyme, YggS family [Saccharomonospora viridis
DSM 43017]
Length = 244
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +IE + R D V L+AV+K + L G EN+ QEA
Sbjct: 9 LATALRKITDRIEQACRRVGRSPDEVRLIAVTKTFPATDAAALLDLGVRNLGENRDQEAV 68
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----- 114
K + R + DV+ +G LQ NK + +++V + A L+ +
Sbjct: 69 AKVREVGQLRPDADVRWHMVGRLQRNKARSVARWAAEVQSVDSLRLADALTKAVRAALEA 128
Query: 115 -KQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++ R L V +Q + + + G + ++ ++ ++ L + G+M + P +P+P
Sbjct: 129 GERDRPLDVLVQASLDDDPSRGGCPIDDLSELADVIAQRGDYLRLRGVMAVAPLGVDPEP 188
Query: 173 HFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+ +A + T++S GM+ D + AIA G+T VR+G+ + G R
Sbjct: 189 AFERLAAVAERLRKDHPEATEISAGMSGDLDQAIAYGSTCVRVGTALLGGR 239
>gi|295102832|emb|CBL00377.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii L2-6]
Length = 239
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++K+ +A A R V L A K + + + + +F EN +QE
Sbjct: 9 MREAVEAIREKMAAAARAAGRDPAGVQLCAACKTRTADTVAASAALAIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANYDA-GAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLAAIEKEAAKTGIVQDV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E KSG+ P Q + + + V+GLM IPP + + L+++ +
Sbjct: 128 LLEVNIGGEESKSGVSPEQLWPLLDAAAAEEHIRVKGLMAIPPVNDDDAQNRRYLAQVYK 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K+ LSMGM+ DFE AI GAT VRIG+ I+GER
Sbjct: 188 LFVQAGERGYQNVKMETLSMGMSGDFENAIREGATLVRIGTAIYGERDYS 237
>gi|312140137|ref|YP_004007473.1| alanine racemase [Rhodococcus equi 103S]
gi|311889476|emb|CBH48793.1| putative alanine racemase [Rhodococcus equi 103S]
Length = 242
Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + ++E + A R V+L+ V+K + +RV G F E++ EA
Sbjct: 7 VASALTRVRARLEAACREAGREPSEVALLPVTKFFPASDVRVLYDLGCRAFGESREPEAS 66
Query: 63 KKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------E 112
K + D V+ IG LQ NKV +V D + ++ + LS +
Sbjct: 67 TKVAEFSADPDVTEPVRWHMIGRLQRNKVKSVVRWADTVHSLDSGRLTDALSGAVAAALD 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++SR + V +QV+ + + G+ + L + GLM +PP +P
Sbjct: 127 AGERSRAVEVLVQVSLDGDPSRGGVPVADLESLADRVASAPGLELAGLMAVPPLGADPDA 186
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ + LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 AFAQLHEVHADLMRVHPGAGTLSAGMTGDLESAVRHGSTCVRVGTALLGSRP 238
>gi|317968896|ref|ZP_07970286.1| hypothetical protein SCB02_05105 [Synechococcus sp. CB0205]
Length = 199
Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 3/196 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
L+AVSK + IR + GQ F E++LQEA K L D+ FIG LQ+
Sbjct: 2 PSHTRLLAVSKGHPASSIRALVQAGQRSFGESRLQEATAKQQELTDCVDLDWHFIGRLQA 61
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++ F VI +V A +S ++ +++QV + K G+ + +
Sbjct: 62 NKVRPVLKQFSVIHSVDSLSLAERISRIAGEEGLLPSIFLQVKLRPDPNKGGLSVEELER 121
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAI 201
+Q L + GLM + P L +E +A+ L +LSMGM+ D+ A
Sbjct: 122 EWPRLQQLPHLRIVGLMTMAPLEVEGAERAALFAECSALAQRLGLAELSMGMSGDWPEAA 181
Query: 202 ASGATSVRIGSGIFGE 217
A+G+T VR+GS +FG
Sbjct: 182 AAGSTWVRVGSALFGP 197
>gi|224080861|ref|XP_002193974.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial) [Taeniopygia guttata]
Length = 276
Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 110/238 (46%), Gaps = 22/238 (9%)
Query: 7 LQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ +A P LVAVSK + + A GQ F EN +QE +K
Sbjct: 16 LRAVTEQVQQAAARRPQGLPAVQPRLVAVSKTKPVEMVMEAYGHGQRSFGENYVQELLEK 75
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
R D++ FIG LQ N V++++++ ++ + + S + S
Sbjct: 76 ASDSRILSSCPDIKWHFIGHLQKNNVNKLIAVPNLFMLETVDSVKLADRVNSSWQKKGSS 135
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN----PKP 172
+ L V +QVNT E K G+ P T V + L GLM I + P P
Sbjct: 136 QKLKVMVQVNTSGEDSKHGLPPGDTAAAVEHVINKCPSLEFVGLMTIGSIGHDLSKGPNP 195
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F +L E+ + L +LSMGM+ DF+ AI G+T+VRIGS IFGER +
Sbjct: 196 DFQVLLSVRQEVCEKLNLPLDKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGERDYSS 253
>gi|318042389|ref|ZP_07974345.1| hypothetical protein SCB01_11801 [Synechococcus sp. CB0101]
Length = 224
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 13/219 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L + ++ S L+AVSK + IR GQ F E++LQEA
Sbjct: 7 AERLAAIRAQL----------PASTQLLAVSKGHPAAAIRELAGLGQRSFGESRLQEAAP 56
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + FIG LQ+NKV ++ F + +V A ++ ++ V
Sbjct: 57 KQDELADLPGLDWHFIGRLQANKVRPVLQRFAWLHSVDSLPLAERVARIAQEEGVSPKVL 116
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---I 180
+QV + K G P + + L + GLM + P + L + +
Sbjct: 117 LQVKLRPDPAKGGFEPEALRQAWPQLQALPALQLVGLMTMAPLGLDAAERQSLFHDCAAL 176
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
ARE L +LSMGM+ D+ A A+G++ VRIGS +FG +P
Sbjct: 177 ARELGLEQLSMGMSGDWREAAAAGSSWVRIGSALFGPKP 215
>gi|284929616|ref|YP_003422138.1| YggS family protein [cyanobacterium UCYN-A]
gi|284810060|gb|ADB95757.1| pyridoxal phosphate enzyme, YggS family [cyanobacterium UCYN-A]
Length = 218
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ + +I SVSL+ VSK + I+ A + G FAEN+LQE
Sbjct: 1 MEINKRITQIRSEI----------PSSVSLIVVSKQQSVESIKEAYNSGIRDFAENRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L++ D+ FIG LQ+NK +++ F+ I +V + A L+ + K S
Sbjct: 51 ALEKQEELKEYDDISWHFIGHLQTNKAKKVLENFNWIHSVDSLRLAQHLNQIIEKISASP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G +P + + + L + GLM I P + + +
Sbjct: 111 YICLQVKAMPDPDKYGWLPETLWEDLHELEKCKNLMIRGLMTILPLNLSTNESLHAFQKV 170
Query: 180 --IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+A++ L +LSMGM+ D+ LAI T +R+G IF
Sbjct: 171 QTLAQDINEKSSLFLKELSMGMSNDYLLAIQKNTTMIRLGRTIF 214
>gi|167648989|ref|YP_001686652.1| alanine racemase domain-containing protein [Caulobacter sp. K31]
gi|167351419|gb|ABZ74154.1| alanine racemase domain protein [Caulobacter sp. K31]
Length = 214
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 106/214 (49%), Positives = 142/214 (66%), Gaps = 3/214 (1%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +I +A+ A RP D+V+LVAVSK+ I L GQ +F EN++QEA +
Sbjct: 3 DAYASIQSRIRAAALAAGRPADAVTLVAVSKLQPWDHIAPILDAGQRVFGENRVQEAMGR 62
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W R +++LR IG LQSNK E V+ FDVIE++ REK A +L+ E+ + + +++
Sbjct: 63 WSERRA--EIELRLIGPLQSNKAREAVAFFDVIESLDREKLARVLAGEIQARGKAPGLFV 120
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+G+ PNQ F+ LCR L VEGLMCIPPA +P PHF LL++IA
Sbjct: 121 QVNTGEEPQKAGVTPNQADAFIALCRG-LDLPVEGLMCIPPAELDPAPHFRLLADIAARN 179
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+KLSMGM+ DFE AIA GATSVR+GS +FG R
Sbjct: 180 GLSKLSMGMSDDFETAIACGATSVRVGSALFGRR 213
>gi|166368333|ref|YP_001660606.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
gi|166090706|dbj|BAG05414.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
Length = 219
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++++ + + S L+AVSK V S IR A G FAE+KLQE
Sbjct: 1 MTIASRIESIRLTL----------PPSTRLIAVSKQVSSDYIRQAYRAGVRDFAESKLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +++ FD+I ++ K A L +
Sbjct: 51 AISKQQELKDLPDIYWHFIGHLQANKARKVLESFDLIHSLDSLKLAQRLDRLAAELEINP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QV + K G ++ + QL ++GLM I P + +
Sbjct: 111 QVLLQVKVIPDPDKFGWDTDELIADIPALVNCQQLKIQGLMTILPQGLSAGEKLAAFEKT 170
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D+ LAI +GAT +R+G+ IFG+R
Sbjct: 171 SDLAQIIENSSSLCLPHLSMGMSNDYPLAIKAGATLIRVGTSIFGDRIY 219
>gi|333027797|ref|ZP_08455861.1| hypothetical protein STTU_5301 [Streptomyces sp. Tu6071]
gi|332747649|gb|EGJ78090.1| hypothetical protein STTU_5301 [Streptomyces sp. Tu6071]
Length = 244
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 16/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVGQVGENRDQEAG 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + FIG LQ+NK + + +V R + A+ L +++ R +
Sbjct: 71 PKAAACADL-PLTWHFIGQLQTNKAKSVARYASYVHSVDRARLAAPLGAAAVREGREIGA 129
Query: 123 YIQV------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV + + G P++ + V L GLM + P G+ +
Sbjct: 130 LVQVALDAEGDPAAHAGRGGAHPDEVPELVDRIAATEGLRPAGLMTVAPLAGRYAGDARA 189
Query: 173 HFYLLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+E+A T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 190 AFARLAELASLVRAAHPAATMVSAGMSGDLEEAIAAGATHVRIGSAILGTRSP 242
>gi|317151980|ref|YP_004120028.1| alanine racemase domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316942231|gb|ADU61282.1| alanine racemase domain protein [Desulfovibrio aespoeensis Aspo-2]
Length = 235
Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 106/229 (46%), Gaps = 10/229 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++ + +A A R ++LVAVSK + +R GQ F EN +QEA
Sbjct: 8 LAERAAEVRETLAEAARRAGRAPGDITLVAVSKFHAASDVRALAGAGQADFGENYVQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + FIG LQSNK +V F ++ +V K A L + + +
Sbjct: 68 AKREALADL-GLNWHFIGGLQSNKARFVVGNFCLVHSVDSHKLAQALHKKASELGVVQDI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E QKSGI + + GLM +PP +P +P F L E
Sbjct: 127 LIQVNGAGEAQKSGITEENLIPLAEAVLGMGGVRLVGLMTLPPFFDDPARARPVFARLRE 186
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ +L LSMGMT DF A+ GAT VRIG+ IFG RP +T
Sbjct: 187 LRDALEARLGHRLPHLSMGMTGDFVPAVEEGATLVRIGTRIFGARPRRT 235
>gi|313890724|ref|ZP_07824349.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120825|gb|EFR43939.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
pseudoporcinus SPIN 20026]
Length = 223
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +++ + + A R +++V +VAV+K VD L G AEN++ +
Sbjct: 1 MNLEKNKKSIFEQVHKACVAANRLEENVKVVAVTKHVDISTASALLDIGIKHLAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IGSLQ KV ++++ D + A + + + +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGSLQRRKVKDVINHVDYFHALDSLNLAKEIQK---RAAHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G P++ + + ++ + GLM I P + + +
Sbjct: 117 NCFLQVNISGEESKHGFSPDEVNLVLPQIAELDKIRLVGLMTIAPLDADSETIHNIFEQA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ +E + T+LSMGM+ D+E+AI GAT VRIG+ F
Sbjct: 177 AQLRQELQRQDRKNMPFTELSMGMSNDYEIAIQHGATFVRIGTSFF 222
>gi|239940566|ref|ZP_04692503.1| hypothetical protein SrosN15_06183 [Streptomyces roseosporus NRRL
15998]
gi|239987050|ref|ZP_04707714.1| hypothetical protein SrosN1_07062 [Streptomyces roseosporus NRRL
11379]
gi|291444001|ref|ZP_06583391.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346948|gb|EFE73852.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 239
Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + S DV+++V R K + LS ++ R L
Sbjct: 68 PKATACADLS-LTWHFVGQLQTNKVRSVTSYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV +G ++ G+ P+ ++ L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVEELAAAIDSAPGLRLDGLMTVAPLAGEYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|326779870|ref|ZP_08239135.1| protein of unknown function UPF0001 [Streptomyces cf. griseus
XylebKG-1]
gi|326660203|gb|EGE45049.1| protein of unknown function UPF0001 [Streptomyces cf. griseus
XylebKG-1]
Length = 239
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + DV+++V R K + LS ++ R L
Sbjct: 68 PKATACADLS-LTWHFVGQLQTNKVRSVTGYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV +G ++ G+ P+ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVAELAAAIGAAPGLRLDGLMTVAPLAGEFAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|238927883|ref|ZP_04659643.1| TIM-barrel fold protein [Selenomonas flueggei ATCC 43531]
gi|238884216|gb|EEQ47854.1| TIM-barrel fold protein [Selenomonas flueggei ATCC 43531]
Length = 234
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+G +++ + +I + R V L+AV+K ++ A+ G + EN++QE
Sbjct: 2 IGEQIRKVQAEIMAARARRTRVSKDAPVELIAVTKNHPVTAMQEAIDAGLMNIGENRIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K E +V+ IG LQ+NK V LFD+I +V A + K +
Sbjct: 62 AMDKAE--TLEREVKWHLIGHLQTNKAKHAVRLFDLIHSVDSVHLARAIDRAAEKFGKVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
+ +QVN E KSGI ++ + + ++G MCI P + + L
Sbjct: 120 NILVQVNLAREESKSGIYREDLEELLAAIDGMDSIRLQGFMCIAPNYEDVEQCRPLFRAM 179
Query: 179 -EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ ++ K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 180 YELFQQTKAAEPHKADIRYLSMGMTHDYRIAVEEGANLVRVGTAIFGARDY 230
>gi|331269356|ref|YP_004395848.1| hypothetical protein CbC4_1171 [Clostridium botulinum BKT015925]
gi|329125906|gb|AEB75851.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
Length = 220
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K+ I + +L+AVSK +++ C F ENK+QE
Sbjct: 1 MSIKENVDKIKKSI----------PEGTTLIAVSKTRLLEELEEVYKCDIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV IG LQ+NKV IV +I ++ + + +
Sbjct: 51 LIEKIDNFHD--DVHWHLIGHLQTNKVKYIVGKVHLIHSLDNIRLLKEIEKRYSMCDKVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----------AMGNP 170
V IQ+N G + KSG++ +D + C + + V+G+M + P
Sbjct: 109 NVLIQINIGRDPNKSGVLLEDLQDLINECEKCKYVKVKGIMTVIPKGNQDTNREYFKEMK 168
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +L + +SMGMT D+++A+ G+ VRIG GIFG+R
Sbjct: 169 NIYNFLSKNKYENVNMEFISMGMTGDYKIALEEGSNMVRIGEGIFGKRVYN 219
>gi|182439218|ref|YP_001826937.1| hypothetical protein SGR_5425 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467734|dbj|BAG22254.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 239
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV ++ DV+++V R K + LS ++ R L
Sbjct: 68 PKATACADLS-LTWHFVGQLQTNKVRSVIGYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV +G ++ G+ P+ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVAELAAAIGAAPGLRLDGLMTVAPLAGEFAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|77735663|ref|NP_001029529.1| proline synthase co-transcribed bacterial homolog protein [Bos
taurus]
gi|115311845|sp|Q3T0G5|PROSC_BOVIN RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|74267697|gb|AAI02406.1| Proline synthetase co-transcribed homolog (bacterial) [Bos taurus]
gi|296472322|gb|DAA14437.1| proline synthetase co-transcribed bacterial homolog protein [Bos
taurus]
Length = 273
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A S GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + + +
Sbjct: 77 ASNPQILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSAWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P + V + L GLM I + P P
Sbjct: 137 ERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F +L E+ R+ +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 197 DFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYS 253
>gi|24379034|ref|NP_720989.1| hypothetical protein SMU.553 [Streptococcus mutans UA159]
gi|290580945|ref|YP_003485337.1| hypothetical protein SmuNN2025_1419 [Streptococcus mutans NN2025]
gi|24376929|gb|AAN58295.1|AE014900_3 conserved hypothetical protein [Streptococcus mutans UA159]
gi|254997844|dbj|BAH88445.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 223
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q++ A + R KD V+++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQANKEHVFQEVAAYAQKSGRSKDDVTVIAVTKYVDSDTAEKLVEAGVKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K +D+ IGSLQ KV ++++ D + K A+ + + +
Sbjct: 61 FLDKYRA-LKSYDLTWHLIGSLQRRKVKDVINFVDYFHALDSVKLAAEIQK---RADHQI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + ++ V GLM + P + + + +
Sbjct: 117 KCFLQVNISEEASKHGFRLSEVDKALEEIQHFDKIKVIGLMTMAPIDASEQELTDIFQKA 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + K LSMGM+ DF +AI +G+T VRIGS F
Sbjct: 177 NALRKNLKERKLKNMPFDDLSMGMSGDFPIAIRNGSTFVRIGSAFF 222
>gi|24214180|ref|NP_711661.1| PLP dependent enzyme class III [Leptospira interrogans serovar Lai
str. 56601]
gi|45658124|ref|YP_002210.1| hypothetical protein LIC12276 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24195079|gb|AAN48679.1| PLP dependent enzyme class III [Leptospira interrogans serovar Lai
str. 56601]
gi|45601366|gb|AAS70847.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 222
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q ++++ R ++ +L+AVSK +KI+ A+ CG V F EN++QE
Sbjct: 1 MGVLESYQKIYEELQQL-----RSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQE 55
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ K+ + L IG +QS + ++ + V + L +++ +
Sbjct: 56 GIEKFSQWLKDKNTSLVLHHIGPVQSGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYL 176
+ ++Q N E K G + + + + + GLM + P+ G+ +
Sbjct: 116 KILYFLQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLMVMGPSDGDLTKTREV 175
Query: 177 LSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ KLSMGM+ D+++AI G+ VRIGS IFGER
Sbjct: 176 FRELSKFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGERN 222
>gi|330946139|gb|EGH47377.1| hypothetical protein PSYPI_35980 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 210
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 71/199 (35%), Positives = 91/199 (45%), Gaps = 6/199 (3%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
SV L+AVSK + +R A + G F EN LQEA K + L + FIG
Sbjct: 1 GGDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEALGKQLELSDL-PLCWHFIGP 59
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+QSNK I FD + +V R K A LS + + L + IQVN E KSG P
Sbjct: 60 IQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQD 119
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECKL--TKLSMGMTRD 196
+L + GLM IP +P + + L LSMGM+ D
Sbjct: 120 LPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAAVRTLQEQLNLPLDTLSMGMSHD 179
Query: 197 FELAIASGATSVRIGSGIF 215
E AIA GAT VRIG+ +F
Sbjct: 180 LEAAIAQGATWVRIGTALF 198
>gi|309388999|gb|ADO76879.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
Length = 234
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 11/210 (5%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIG 80
R + L+AVSK ++ + + G F EN++QE ++K + K D+ FIG
Sbjct: 25 NRDPQEIKLLAVSKNHYAEAVEILNEAGVSYFGENRVQELEEKNEKLIEKGIDIDWHFIG 84
Query: 81 SLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
LQ NKV ++ + +I+++ + A ++ K R +PV ++VN + K GIM
Sbjct: 85 HLQRNKVKYLMRMENCQMIQSIDSLRLAKEVNKRAKKNERIIPVLVEVNMAKDENKFGIM 144
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLS 190
P + KDF+ ++ L +EGLM I P + + + ++ + L +LS
Sbjct: 145 PEEVKDFLKQIKEFENLKIEGLMTILPYLDDSQKLRSYFKQMKKIYDDVCENLMPLNELS 204
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGMT D+++AI GAT VR+G IFGER
Sbjct: 205 MGMTNDYQIAIEEGATIVRVGRAIFGEREY 234
>gi|134102281|ref|YP_001107942.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
gi|291003756|ref|ZP_06561729.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
gi|133914904|emb|CAM05017.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
Length = 247
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 101/230 (43%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++++ + A R + V L+AV+K + + G AEN+ QEA+
Sbjct: 13 IAESLREVRERVDAACRAAGRQPEEVELLAVTKTFPAGDAALLADLGLTELAENREQEAR 72
Query: 63 KKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----- 114
K + + IG LQ NK +V DV+E+V + A L
Sbjct: 73 GKVAEFAELRPEAAVRWHMIGQLQRNKARSVVRWADVVESVDSVRLAEALRRAAANALDA 132
Query: 115 -KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
++S L V IQV + G P + L + G+M + P G+P
Sbjct: 133 GERSEPLDVLIQVGLDDAAGRGGCPPGDVSALAAEITRHSDLRLRGVMAVAPLGGDPDVA 192
Query: 174 FYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS IAR + ++S GM+ D E A+A G+T VR+G+ + G R
Sbjct: 193 FATLSGIARRLQEDYPEAVEMSAGMSGDLESAVAHGSTRVRVGTALLGGR 242
>gi|149410174|ref|XP_001513258.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial) [Ornithorhynchus anatinus]
Length = 332
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 112/238 (47%), Gaps = 26/238 (10%)
Query: 7 LQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L+ ++++ +A RP+D LVAVSK + + A GQ F EN +QE
Sbjct: 75 LRAVTERVQQAAAR--RPQDLPAVQPRLVAVSKTKPADMVIEAYIHGQRSFGENYVQELL 132
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIK 115
+K + +++ FIG LQ + V++++++ ++ + + S +
Sbjct: 133 EKASNAKILSSCPEIKWHFIGHLQKHNVNKLITVPNLFMLETVDSVKLADRVNSSWQKKG 192
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----P 170
L V +QVNT E K G++P T V + L GLM I + P
Sbjct: 193 SPERLKVMVQVNTSGEESKHGLLPADTVATVEHINTKCPSLEFVGLMTIGSFGHDLSQGP 252
Query: 171 KPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F +L E+ + ++ +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 253 NPDFQMLVSLRKELCEKLNMSTDSVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDY 310
>gi|325674381|ref|ZP_08154069.1| alanine racemase domain protein [Rhodococcus equi ATCC 33707]
gi|325554641|gb|EGD24315.1| alanine racemase domain protein [Rhodococcus equi ATCC 33707]
Length = 242
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + +++ + A R V+L+ V+K + +RV G F E++ EA
Sbjct: 7 VASALTRVRARLDAACRDAGREPSEVALLPVTKFFPASDVRVLYDLGCRAFGESREPEAS 66
Query: 63 KKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------E 112
K + D V+ IG LQ NKV +V D + ++ + LS +
Sbjct: 67 TKVAEFSADPDVTEPVRWHMIGRLQRNKVKSVVRWADTVHSLDSGRLTDALSGAVAAALD 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++SR + V +QV+ + + G+ + L + GLM +PP +P
Sbjct: 127 AGERSRAVEVLVQVSLDGDPSRGGVPVADLESLADRVASAPGLELAGLMAVPPLGADPDA 186
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ + LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 AFAQLHEVHADLMRVHPGAGTLSAGMTGDLESAVRHGSTCVRVGTALLGSRP 238
>gi|325110552|ref|YP_004271620.1| hypothetical protein Plabr_4021 [Planctomyces brasiliensis DSM
5305]
gi|324970820|gb|ADY61598.1| protein of unknown function UPF0001 [Planctomyces brasiliensis DSM
5305]
Length = 239
Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 13/223 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +++ + A R + L+AV+K + + L G+ E++ Q+ K
Sbjct: 12 IAENVRQIRDRMQAA--YAGRDDERPKLIAVTKYARDEWVEALLQLGECQLGESRPQQLK 69
Query: 63 KKWIPLRKEWDVQ-LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ ++ + IG LQ NKV I+ ++ +V + + + +
Sbjct: 70 ARSEQFARQTNRPCWHMIGQLQRNKVRSIIDATAMVHSVDSLRLLNHIDRIAGEVGVTPA 129
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG P + + + + GLM + P + + + S++
Sbjct: 130 LLLQVNVSGEESKSGFSPEEIRAAAEQLTDFNNVQISGLMTLAPKTDDEQTARQVFSDLR 189
Query: 182 R----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + KLT+LSMGMT DFE AI G+T VRIGSG+
Sbjct: 190 KMREELQTRNNQLKLTELSMGMTNDFEWAIQEGSTMVRIGSGL 232
>gi|254253188|ref|ZP_04946506.1| hypothetical protein BDAG_02441 [Burkholderia dolosa AUO158]
gi|124895797|gb|EAY69677.1| hypothetical protein BDAG_02441 [Burkholderia dolosa AUO158]
Length = 262
Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 31 MSDLAARLASVHRRIADAARAAGRDPSSVSLLAVSKTFPAADVRAAHAAGQRAFGENYVQ 90
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L D++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 91 ESIDKIDALADLRADLEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLADQRPAHLP 150
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSG+ P D L + GLM IP +P
Sbjct: 151 PLNVCVQVNISGEASKSGVAPADVADVAHAVAALPSLRLRGLMAIPEPAADPDAQRAPHR 210
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 211 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 261
>gi|242239592|ref|YP_002987773.1| alanine racemase domain protein [Dickeya dadantii Ech703]
gi|242131649|gb|ACS85951.1| alanine racemase domain protein [Dickeya dadantii Ech703]
Length = 219
Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 75/215 (34%), Positives = 112/215 (52%), Gaps = 8/215 (3%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ K +E + A L+ VSK KI+ + G F E+++ EA K
Sbjct: 11 DNYLGIKASVEAVSRAA-------RLLVVSKFHTMDKIQPLIHAGHRCFGESRVDEAINK 63
Query: 65 WIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W + D++L FIG LQS KV++IV FDVI++V R A +S + ++
Sbjct: 64 WDALRNQYEDLELHFIGGLQSRKVAKIVEFFDVIQSVDRASLADKISSCAKSLGKTQKIF 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQ+N G E QKSG+ N D + + +EG+MCIPP + +F +S I +
Sbjct: 124 IQINIGDEPQKSGVSVNDFDDVFAHVSRLDNICIEGVMCIPPNEKDVSVYFSQMSAITEK 183
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D++LA+ +T VR+GS IFGER
Sbjct: 184 YHFPQLSMGMSNDYKLALCYNSTMVRVGSAIFGER 218
>gi|315639615|ref|ZP_07894755.1| cell division protein YlmE [Enterococcus italicus DSM 15952]
gi|315484576|gb|EFU75032.1| cell division protein YlmE [Enterococcus italicus DSM 15952]
Length = 223
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +Q+++ + LA R ++SV+LVAV+K VD + ++ G AEN++ E
Sbjct: 2 ISENLRKVEQEVQKACALASRQRESVTLVAVTKTVDLETTIEVVTNGVTDCAENRV-EPF 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ +V FIG+LQ KV +++ D + A+ + + ++ +
Sbjct: 61 LAKKEAMKDLNVTWHFIGNLQRRKVKHVINEVDYFHALESLSLANEIQK---RATKKIRC 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+I+VN E K GI P++ FV + ++ + GLM + P + ++
Sbjct: 118 FIEVNVSGEESKQGIKPSELSSFVEQLSEFDKVEIVGLMTMAPFQSTKSEQRDVFLQLRN 177
Query: 183 ECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
K +LSMGM+ D+ +AI GAT +R+G+ +
Sbjct: 178 LQKSIEAQQLTYAPCHELSMGMSNDYTVAIEEGATFIRVGTAL 220
>gi|296120723|ref|YP_003628501.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
gi|296013063|gb|ADG66302.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
Length = 258
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 32/241 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ +Q+I S + R + V+L+AV+K V + I G E++ Q +
Sbjct: 2 NLKSVEQEIIRSCEKSGRLPNEVTLIAVTKYVHAPVIAALYDLGVRDVGESRPQNLALRR 61
Query: 66 IPLRKEW---------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
+ + D++ IG LQ NK VS D I + E+ + L
Sbjct: 62 CEVEALFPSTTSGSTRDEGTLADLKWHLIGHLQRNKAELAVSKADAIHSCDSERLLTRLD 121
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-------RQKYQLNVEGLMCI 163
+ R LP+++++N E+ K G P++ + + GLM +
Sbjct: 122 QLLSATPRPLPLFLEINISGEVSKHGFTPDEARAWWRAQAVERPAGCMAQSHLPVGLMTM 181
Query: 164 PPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSG 213
P +P + S + E +L LSMGM+ DF +AI GAT VR+GS
Sbjct: 182 APIDASPAELVQIFSGLKDLKIELEAMSSEHRLPWLSMGMSGDFPIAIECGATHVRVGSR 241
Query: 214 I 214
+
Sbjct: 242 L 242
>gi|219848763|ref|YP_002463196.1| alanine racemase domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219543022|gb|ACL24760.1| alanine racemase domain protein [Chloroflexus aggregans DSM 9485]
Length = 242
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 76/238 (31%), Positives = 110/238 (46%), Gaps = 21/238 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L +++I +A A R D + L+AVSK + + A++ G EN++QEA
Sbjct: 4 TLSRRLAAVREQIAVAAAAAGRQVDEIQLIAVSKTHPPEVVAAAVAAGVTDLGENRVQEA 63
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + + IG LQ NK VSLFD+I +V + A L + R +
Sbjct: 64 QQKIAALHHLQPRPRWHLIGHLQRNKAKLAVSLFDLIHSVDSLRLAEALDRHARELDRRM 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK----------YQLNVEGLMCIPPAMGNP 170
P+ +QVN E K G R+ L V GLM I P + +P
Sbjct: 124 PILLQVNVSGEASKEGFWLPGGITNDAAYRELLPAIEAILALPALEVCGLMTIAPIVDHP 183
Query: 171 ---KPHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F L + + +LSMGM+ D AIA GAT VRIG IFGER
Sbjct: 184 DAARPYFAALRALRDDLARRYPQASWRELSMGMSDDLSAAIAEGATMVRIGRAIFGER 241
>gi|33151535|ref|NP_872888.1| K+ uptake protein [Haemophilus ducreyi 35000HP]
gi|33147755|gb|AAP95277.1| K+ uptake protein [Haemophilus ducreyi 35000HP]
Length = 234
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 109/232 (46%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+I+ +R ++V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSVSENLSTVRQQIQQICRQFER--ENVRLLAVSKTKSIEAIEAAIAAGQTAFGENYVQE 58
Query: 61 ---AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ K ++ FIG LQSNK + FD ++T+ R K A L+L+
Sbjct: 59 AIEKISYFNQQNKSKRLEWHFIGPLQSNKTRLVAENFDWLQTLDRLKIAERLNLQRPADL 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHF 174
L V IQ+N E K+GI P Q +F L + GLM IP + K F
Sbjct: 119 APLNVLIQINISDEASKAGITPQQMMNFAEAINALPHLCLRGLMAIPKPAVDIAQQKAVF 178
Query: 175 YLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ K LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQMQQLFDCLKAEFAQVDTLSMGMSDDMLSAIECGSTMVRIGTAIFGVRDYS 230
>gi|148238907|ref|YP_001224294.1| TIM-barrel fold family protein [Synechococcus sp. WH 7803]
gi|147847446|emb|CAK22997.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. WH 7803]
Length = 216
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 3/201 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+L+AVSK + IR ++CGQ+ F E+++QEA K L ++ FIG LQ+
Sbjct: 16 PSGVNLLAVSKGHPADAIRDLVACGQLDFGESRVQEALPKQNALADLPQIRWHFIGRLQA 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F I ++ A S +++ + +QV + K G + KD
Sbjct: 76 NKVRAVVKAFRWIHSIDSLALAERTSRIALEEQQQPTALLQVKLRDDPAKGGWEIDALKD 135
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAI 201
+ L + GLM + P + L E +A L SMGM+ D+ A
Sbjct: 136 AWPELQALQGLQISGLMTMAPLGVGAEDRSALFRECRHLADALGLEHCSMGMSGDWREAA 195
Query: 202 ASGATSVRIGSGIFGERPCQT 222
A+GAT VR+GS +FG R T
Sbjct: 196 AAGATWVRLGSVLFGPRQLPT 216
>gi|229162836|ref|ZP_04290793.1| hypothetical protein bcere0009_36060 [Bacillus cereus R309803]
gi|228620718|gb|EEK77587.1| hypothetical protein bcere0009_36060 [Bacillus cereus R309803]
Length = 222
Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats.
Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 16/223 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + + I+ + A R + LVAV+K V +K + G + EN+ + +K+
Sbjct: 4 NLVIVNEAIKETCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFIQKY 63
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + FIGSLQ+ KV EI++ D + ++ R A + + + + +IQ
Sbjct: 64 EHFGSKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQ 118
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---- 181
V T E K G+ +T F+ ++ ++ V GLM + P + ++
Sbjct: 119 VKTSPEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTEEEEEVRRCFKKLRVLQT 178
Query: 182 --RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 179 EVQGLGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|87303083|ref|ZP_01085881.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
gi|87282250|gb|EAQ74210.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
Length = 215
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 13/219 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ ++++ L+AVSK + ++R A++ G F E++LQEA+
Sbjct: 6 LAQRLETLQEQL----------PPQARLLAVSKGQPAARLREAVALGLRSFGESRLQEAQ 55
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + + FIG LQ+NK ++ F I +V A L ++ V
Sbjct: 56 AKQAELAELEPLDWHFIGRLQANKARGVLRHFGTIHSVDSLPLAERLQRIAAEEQLSPRV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE--- 179
+ QV + K+G P + + R L GLM I P F L +
Sbjct: 116 FFQVKLRPDPGKTGFEPRELEQCWPRLRALEPLVPVGLMTIAPLGLEADQRFGLFQDCAA 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A L +LSMGM+ D+ A+ +G+T VR+GS +FG R
Sbjct: 176 LAATLGLKELSMGMSSDWPEAVRAGSTWVRLGSALFGPR 214
>gi|94313040|ref|YP_586249.1| hypothetical protein Rmet_4113 [Cupriavidus metallidurans CH34]
gi|93356892|gb|ABF10980.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length = 286
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 92/215 (42%), Gaps = 11/215 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
R V L+ VSK IR+A + G + ENK QEA +KW L D+Q
Sbjct: 46 CHRVGRDPAGVRLLPVSKAKPEASIRLAHAAGCRLLGENKPQEAYRKWEALADLEDLQWS 105
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ+NK + + + A L + + R L V++QVNT E K G+
Sbjct: 106 VIGHLQTNKAKLAARFATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEASKFGL 165
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE-----------CKL 186
P++ F+ L V GLM + + + L
Sbjct: 166 HPDEVPGFLRALPAFSGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGL 225
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 226 DELSMGMSGDFEIAIEEGATVVRVGQAIFGARSTP 260
>gi|254382588|ref|ZP_04997946.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194341491|gb|EDX22457.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 239
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERISSACAAAGRARDEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + V+++V R K + LS R L
Sbjct: 68 PKAAACADL-PLGWHFVGQLQTNKVRSVAGYAHVVQSVDRPKLVTSLSAAATGAGRELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+Q+ +G + G P Q + L L ++G+M + P G + F
Sbjct: 127 LVQIALDAESGGRGTRGGAAPEQLAELADLVAAAPGLRIDGVMTVAPLAGPYAGREQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E++ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLVELSSSLRADHPAATMVSAGMSADLEQAVAAGATHVRVGTAVLGARP 236
>gi|34541703|ref|NP_906182.1| hypothetical protein PG2126 [Porphyromonas gingivalis W83]
gi|34398021|gb|AAQ67081.1| conserved hypothetical protein TIGR00044 [Porphyromonas gingivalis
W83]
Length = 224
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L + + V L AVSK +++ A GQ +FAE+++Q
Sbjct: 1 MTLIAERLVPILRSL----------PQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + DV+ FIG LQ+NKV IV +I++VS K +S + K R
Sbjct: 51 ELMSKVEAMPD--DVEWHFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRT 108
Query: 120 LPVYIQVNTGYEIQKSGIMP---NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+PV ++V+ E KSG P Q + V+ + + GLM + + +
Sbjct: 109 VPVLLEVHIASEDTKSGFTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRRE 168
Query: 177 LSEIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A +LSMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 169 FRRLASLFREMKERFFSDSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGERRY 224
>gi|209527933|ref|ZP_03276419.1| alanine racemase domain protein [Arthrospira maxima CS-328]
gi|209491623|gb|EDZ91992.1| alanine racemase domain protein [Arthrospira maxima CS-328]
Length = 223
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 27/232 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + I V LVAV+K V + IR+A G F EN++QEA
Sbjct: 4 SIAERIAQIRAAI----------PPEVRLVAVTKTVSVEAIRLAYEAGVRDFGENRVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + L+ D+ IG LQSNK + ++ FD + +V K A L +QSR
Sbjct: 54 EAKQLQLQDLRDITWHLIGHLQSNKAATAIAHFDWLHSVDSWKLAQRLDRLAREQSRCPR 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QV + K G + + LN++GLM IPP + +
Sbjct: 114 ICLQVKILPDPNKYGWTVPELLADLPQLNACESLNIQGLMTIPPQGLTETQTRSVFEKTR 173
Query: 182 R-----------ECKLTKLSM---GMTRDFELAIASGATSVRIGSGIFGERP 219
+ K+ +LSM G + LA+ +GAT +R G IFG R
Sbjct: 174 QLAAEIGAQNWSHIKMAELSMVCQGT---YLLAVEAGATMIRPGQIIFGPRN 222
>gi|91069957|gb|ABE10885.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC2259]
Length = 211
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ K KI +V+++AVSK S+ I+ + GQ F E+K+QE
Sbjct: 1 MN-PANYLKIKNKI----------PSNVNILAVSKGFKSQDIKTIQNIGQNDFGESKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ ++ FIG +QSNKV +IV F I +V + +S ++ +
Sbjct: 50 AFEKQFILKDLKQIKWHFIGRIQSNKVRKIVQNFKYIHSVDSFEKLQKISSVSFEEKKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +Q+ + K G+ P ++ + ++GLM I P + K + L +
Sbjct: 110 LIMLQIKLSDDPSKGGLKPELLISQWKEIKELKNITLKGLMTINPRGLSSKENLDLFRKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG+R
Sbjct: 170 RSLADSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSSIFGDR 210
>gi|118200267|dbj|BAF37074.1| hypothetical protein [Porphyromonas gingivalis]
Length = 224
Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L + + V L AVSK +++ A GQ +FAE+++Q
Sbjct: 1 MTLIAERLVPILRSL----------PQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + DV+ FIG LQ+NKV IV +I++VS K +S + K R
Sbjct: 51 ELMSKVEAMPD--DVEWHFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRT 108
Query: 120 LPVYIQVNTGYEIQKSGIMP---NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+PV ++V+ E KSG P Q + V+ + + GLM + + +
Sbjct: 109 VPVLLEVHIASEDTKSGFTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRRE 168
Query: 177 LSEIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A +LSMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 169 FRRLASLFREMRERFFSDSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGERRY 224
>gi|238897705|ref|YP_002923384.1| putative alanine racemase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465462|gb|ACQ67236.1| putative alanine racemase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 239
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 101/228 (44%), Gaps = 13/228 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +Q K++I + A R + L+AVSK K I A+ GQ F EN +Q
Sbjct: 1 MNAIKQNIQNVKERILSDAQNCGRSPKEIQLLAVSKTRSVKLITEAIQAGQYAFGENYVQ 60
Query: 60 E----AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E Q FIG LQSNK + FD TV R K A LS +
Sbjct: 61 EGIEKIHYFSKNRMGNIKPQWHFIGPLQSNKTRSVAEYFDWCHTVDRFKLAERLSAQRPS 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L V IQVN E KSG+M ++ D L +L + GLM IP + +
Sbjct: 121 NLPDLNVLIQVNISKEKTKSGVMLSELFDLASLISPLPKLKLCGLMAIPALIKDYHQQLV 180
Query: 176 LLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E+ + LS+GMT D AI +G+T VRIG GIF
Sbjct: 181 VFEEMHSAFLELKKEYPEWDILSLGMTNDMTAAIHAGSTLVRIGEGIF 228
>gi|78778775|ref|YP_396887.1| hypothetical protein PMT9312_0390 [Prochlorococcus marinus str. MIT
9312]
gi|78712274|gb|ABB49451.1| Protein of unknown function UPF0001 [Prochlorococcus marinus str.
MIT 9312]
Length = 211
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + K KI +V+++AVSK S++I+ + GQ F E+K QE
Sbjct: 1 MN-PSNYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ ++ FIG +QSNK+ +IV F I +V + +S + +
Sbjct: 50 AFEKQLILKDLKKIKWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISDAEKKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P+ ++ + + GLM I P + K + L +
Sbjct: 110 LIMLQVKLSDDPTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSKENTKLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T VR+GS IFG+R
Sbjct: 170 RSLADSLQLPDCSMGMSGDWEEAIDAGSTWVRLGSLIFGDR 210
>gi|313637029|gb|EFS02599.1| pyridoxal phosphate enzyme, YggS family [Listeria seeligeri FSL
S4-171]
Length = 229
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLRIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R A + K
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRASLAKEIEKRATKLV--- 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++Q+N E K G + + + + GLM + P + ++ E+
Sbjct: 118 KCFLQINISGEETKHGFS-KEEALSFLQEADFKYIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|289551029|ref|YP_003471933.1| hypothetical protein SLGD_01715 [Staphylococcus lugdunensis
HKU09-01]
gi|289180561|gb|ADC87806.1| protein of unknown function [Staphylococcus lugdunensis HKU09-01]
Length = 222
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L +Q+IE+ + ++++AV+K V ++ + A G F EN+L+
Sbjct: 1 MDVKSNLAHIQQEIESHKKKSTIDSH-INVIAVTKYVTIERAKEAYDAGLRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + + +
Sbjct: 60 FLEKKAA--LPEDAVMHFIGSLQSRKVKDVINEVDYFHALDRMSLAKEINK---RANHTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI N+ F+ + + + GLM + P + + L ++
Sbjct: 115 SCFLQVNVSGEASKHGIHLNEVDKFIDDIKAYENIKIVGLMTMAPFTDDTQYIQELFKKL 174
Query: 181 A---RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDDIQQRQLTYAPCTELSMGMSNDYPVAVEEGATYIRIGTKLVGE 222
>gi|298373203|ref|ZP_06983193.1| pyridoxal phosphate enzyme, YggS family [Bacteroidetes oral taxon
274 str. F0058]
gi|298276107|gb|EFI17658.1| pyridoxal phosphate enzyme, YggS family [Bacteroidetes oral taxon
274 str. F0058]
Length = 225
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 57/232 (24%), Positives = 96/232 (41%), Gaps = 24/232 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + V LV VSK + I A GQ F E+++QE
Sbjct: 2 IKENLNNIL----------GDLPEGVRLVCVSKFHPVEAICEAYEQGQRDFGESRVQELV 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D++ FIG LQ+NK+ IV +I++V + + + + R + +
Sbjct: 52 Q--KQPNLPKDIRWHFIGPLQTNKIKYIVPFVHLIQSVENMRQMAEIQKCAARIERRVSI 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++++ E QK G ++ +F + + G+M I + K
Sbjct: 110 LLEIHIAQEEQKHGFSQSELLEFFGEKTYLQYPNIKICGIMTIATLTDDQKQISEEFARA 169
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
I + +LS+GM+ D+ LAI G+T VRIGS IFG+R +
Sbjct: 170 KGIFESVKAIYPDSDFCQLSIGMSDDYRLAIEQGSTMVRIGSKIFGQRIYSS 221
>gi|289450556|ref|YP_003475004.1| pyridoxal phosphate enzyme, YggS family [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289185103|gb|ADC91528.1| pyridoxal phosphate enzyme, YggS family [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 323
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 101/278 (36%), Gaps = 62/278 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V +QKI + AKR V L+AV+K ++I+ L + EN+ QE
Sbjct: 40 LRERLDVVQQKIVAACAAAKRDPREVRLIAVTKTKSLEEIKPLLELEIYDWGENRCQEML 99
Query: 63 KKWIPLRKE-----------------------------------WDVQLRFIGSLQSNKV 87
K L + + IGSLQ NKV
Sbjct: 100 SKQAELTEFDLAAGPGKRAEIELREAASENSGRPGQTQANVVADNPINWHLIGSLQKNKV 159
Query: 88 SEIVSLFDVIETVSR------EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
V +I +V + + + PV ++VN E K G P
Sbjct: 160 KYAVGKTCLIHSVDSLELLLAINARAAKLAQAGADAFCQPVLLEVNYSGETSKHGFAPTA 219
Query: 142 TKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLS-------------------EI 180
+ + + N+ GLM + P P + + E+
Sbjct: 220 IAEILSSLKPGDVSNIRIDGLMTVAPKDAAPAALIEIFNGVRNLRDHLNKSHPWSDTPEL 279
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ LAI +GAT +R+G+ + G R
Sbjct: 280 NKAVNLRELSMGMSHDYPLAIEAGATMIRLGTVLLGPR 317
>gi|299532897|ref|ZP_07046284.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
gi|298719121|gb|EFI60091.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
Length = 240
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 79/236 (33%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L ++ + A RP SV L+AVSK + +R A+ GQ F EN +QEA
Sbjct: 3 TIENNLGQIHARMAAACASASRPVTSVQLLAVSKTFGADAVREAVLAGQRSFGENYIQEA 62
Query: 62 KKKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K +R +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VEKIAAVRAMQLAGGQALQWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQVN KSG+M Q + + L + G+M IP P
Sbjct: 123 MARLNVCIQVNVDGGATKSGVMAEQALELAQAMVKLPNLQLRGIMSIPDDAPDFEAQCVV 182
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGMT D E A+A+G+T VR+GSGIFG+R
Sbjct: 183 HKKAKAVFESIKASGLAGLEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGIFGKRSY 238
>gi|83944980|ref|ZP_00957346.1| hypothetical protein OA2633_10134 [Oceanicaulis alexandrii
HTCC2633]
gi|83851762|gb|EAP89617.1| hypothetical protein OA2633_10134 [Oceanicaulis alexandrii
HTCC2633]
Length = 231
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 101/215 (46%), Positives = 136/215 (63%), Gaps = 1/215 (0%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+I +A A R D + LVAVSK+ ++ L+ GQ IF EN++QEA+K+W
Sbjct: 17 AEILNRIARAAKQAGRSADEIDLVAVSKVQPDDRVDAMLAAGQRIFGENRVQEAQKRWAG 76
Query: 68 LRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
R+ + D+QLR IG LQSNK + +LFDVIET+ REK A L M K R +Y+QV
Sbjct: 77 RRETYPDLQLRLIGPLQSNKADDACALFDVIETLDREKLAGALVKAMEKTGRRPALYVQV 136
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
NTG E QK+G+ N+ +FV CR+ L VEGLMCIPP PHF LL+++A +
Sbjct: 137 NTGDEPQKAGLAVNECVEFVRHCRRDLDLPVEGLMCIPPVEEPAAPHFALLAKLAARADV 196
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFEL + GATS+R+GS +FGER +
Sbjct: 197 ARLSMGMSSDFELGVQLGATSMRVGSALFGEREAR 231
>gi|212696214|ref|ZP_03304342.1| hypothetical protein ANHYDRO_00750 [Anaerococcus hydrogenalis DSM
7454]
gi|212676843|gb|EEB36450.1| hypothetical protein ANHYDRO_00750 [Anaerococcus hydrogenalis DSM
7454]
Length = 224
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +++ L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDNLKKDMKDY---------DAMLLAVTKTHGVDKIMEVYNYGLRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+ IG LQ+NKV++IV +I +V K ++ K S
Sbjct: 52 LLDKKDK--LPDDINWHLIGHLQTNKVNKIVGEVCLIHSVDSLKILKKINNRAKKLSIVQ 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q+N E KSG +D + ++ + + GLM + P + +
Sbjct: 110 DCLLQINISKEESKSGFYEEDIEDIINQAKELENVKIRGLMTMAPNTEDVSVIKSCFKGL 169
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGMT D+++A+ GA +R+GS IFG+R +
Sbjct: 170 KKIFDNLSNLSYNNIEMEYLSMGMTHDYKIALEEGANIIRVGSKIFGKRMYK 221
>gi|220906661|ref|YP_002481972.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
7425]
gi|219863272|gb|ACL43611.1| alanine racemase domain protein [Cyanothece sp. PCC 7425]
Length = 228
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 100/232 (43%), Gaps = 26/232 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +++ + + DSV L+AVSK V IR A + G F EN++QEA
Sbjct: 7 SIVDRIIRIRTTL----------PDSVRLIAVSKGVSGDAIRQAYAAGVRDFGENRVQEA 56
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ IG LQSNK + FD I +V K A L+ S
Sbjct: 57 IAKQDELQDLNDIHWHLIGHLQSNKARIALQHFDWIHSVDSLKLAQHLNHLSQDLSP-PQ 115
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--------------AM 167
V +QV + K G P + Q L V GLM I P A
Sbjct: 116 VLLQVKLRNDPNKYGWNPVDLLQDLPQLAQCSHLQVAGLMVILPLGLSETERLSTFGQAR 175
Query: 168 GNPKPHFYLLSEIA-RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E + +T+LSMGM+ D+ A+ +G+T VR+G +FGER
Sbjct: 176 QLQLQIQAQMREQQWQNMPMTELSMGMSDDYLQAVKAGSTMVRLGRILFGER 227
>gi|188994039|ref|YP_001928291.1| hypothetical protein PGN_0175 [Porphyromonas gingivalis ATCC 33277]
gi|118200279|dbj|BAF37085.1| hypothetical protein [Porphyromonas gingivalis]
gi|188593719|dbj|BAG32694.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 224
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L + + V L AVSK +++ A GQ +FAE+++Q
Sbjct: 1 MTHIAERLVPILRSL----------PQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + DV+ FIG LQ+NKV IV +I++VS K +S + K R
Sbjct: 51 ELMSKVEAMPD--DVEWHFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRT 108
Query: 120 LPVYIQVNTGYEIQKSGIMP---NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+PV ++V+ E KSG P Q + V+ + + GLM + + +
Sbjct: 109 VPVLLEVHIASEDTKSGFTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRRE 168
Query: 177 LSEIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A +LSMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 169 FRRLASLFREMKERFFSDSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGERRY 224
>gi|256962576|ref|ZP_05566747.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|307272012|ref|ZP_07553278.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0855]
gi|256953072|gb|EEU69704.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|306511307|gb|EFM80311.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0855]
Length = 225
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 18/230 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D+Q IG+LQ KV I++ D + A + + ++ +
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQ---KRATKVIRC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++VN E K G F+ ++ + GLM + P + + E+ +
Sbjct: 119 FVEVNITGEESKHGFRKEDVLPFIQELAYLDKIQIVGLMTMAPFGASEEVLHATFREL-K 177
Query: 183 ECKL------------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E ++ T+LSMGM+ DF +A+ GAT +RIG+ +F R
Sbjct: 178 ELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF--RDA 225
>gi|88809280|ref|ZP_01124789.1| hypothetical protein WH7805_06291 [Synechococcus sp. WH 7805]
gi|88787222|gb|EAR18380.1| hypothetical protein WH7805_06291 [Synechococcus sp. WH 7805]
Length = 216
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L+AVSK + IR ++CGQ+ F E+++QEA K LR ++ FIG LQ+
Sbjct: 16 PSEVKLLAVSKGHPADAIRDLVACGQLDFGESRVQEALPKQDALRDLPQIRWHFIGRLQA 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F I ++ A S +++ + +QV + K G +D
Sbjct: 76 NKVRAVVKAFSWIHSIDSLALAQRASRIALEEQQLPTALLQVKLRDDPAKGGWEIEALQD 135
Query: 145 FVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ L + GLM + P A + F E+A L SMGM+ D+ A
Sbjct: 136 AWPELQTLQGLQISGLMTMAPMGVAAEDRSELFRECRELANSLGLQHCSMGMSGDWHEAA 195
Query: 202 ASGATSVRIGSGIFGER 218
A+GAT VR+GS +FG R
Sbjct: 196 AAGATWVRLGSVLFGPR 212
>gi|253682617|ref|ZP_04863414.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum D
str. 1873]
gi|253562329|gb|EES91781.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum D
str. 1873]
Length = 220
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K+ I + +L+AVSK K+++ A C F ENK+QE
Sbjct: 1 MAIKENVYKIKKSI----------PEGTTLIAVSKTRSLKELQEAYECNIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV+ IG LQ+NKV IV +I ++ + + +
Sbjct: 51 LIEKIDNFHN--DVRWHLIGHLQTNKVKYIVGKVHLIHSLDNIRLLKEIEKRYSMCHKVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLS 178
IQ+N G + KSG++ ++ + C + + ++G+M + P + +F +
Sbjct: 109 NALIQINIGRDPNKSGVLKEDLQNLINECEKCKYVKIKGIMTVIPKGNQDANREYFKEMK 168
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I K+ +SMGMT D+++A+ G+ VRIG GIFG+R
Sbjct: 169 NIYDFLSKNNYNNIKMEFISMGMTGDYKIALEEGSNMVRIGEGIFGKRVYN 219
>gi|223043759|ref|ZP_03613802.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus capitis
SK14]
gi|222442856|gb|EEE48958.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus capitis
SK14]
Length = 224
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +Q+I + ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLKQIEQEISEHLEKSS-NSAHPHVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K DV FIGSLQS KV E+++ D + R A ++ + +
Sbjct: 60 FKEKKAA--LPDDVVFHFIGSLQSRKVKEVINEVDYFHALDRLSLAKEINK---RADHVV 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI ++ +F+ + + V GLM + P + + +++
Sbjct: 115 SCFLQVNVSGEESKHGIALDEVNEFLKELKAYENIKVIGLMTMAPLTDDSVYIKSIFNDL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|295394941|ref|ZP_06805154.1| YggS family pyridoxal phosphate enzyme [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972274|gb|EFG48136.1| YggS family pyridoxal phosphate enzyme [Brevibacterium mcbrellneri
ATCC 49030]
Length = 238
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL +++ ++ A + D V ++ +K + KIRVAL G + EN++QE
Sbjct: 13 IRSKLDDVAERVRAASE-ASKHVDRVQILLATKTQPASKIRVALEHGFTLIGENRVQELN 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + IG LQ NKV+ + I+++ K A+ + + + +
Sbjct: 72 EKFDD-LADIPHETHLIGPLQRNKVNHTLGQASCIQSIDSMKLATKIHNRLELLDQTVEA 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E KSG+ P Q + + ++ + GLM I +P + L
Sbjct: 131 FVQVNTSREDTKSGVAPEQLGELLTEIAPLERIRLRGLMTIGLPGSTEAEVRPSYADLRN 190
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T+LSMGM+ DFELAIA GAT VRIGS +FG R
Sbjct: 191 LRDTHLDSGLLPEHATELSMGMSNDFELAIAEGATMVRIGSSVFGAR 237
>gi|325846632|ref|ZP_08169547.1| pyridoxal phosphate enzyme, YggS family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481390|gb|EGC84431.1| pyridoxal phosphate enzyme, YggS family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 224
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +++ L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDDLKKDMKDY---------DAMLLAVTKTHGVDKIMEVYNYGLRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+ IG LQ+NKV++IV +I +V K ++ K S
Sbjct: 52 LLDKKDE--LPDDINWHLIGHLQTNKVNKIVGEIRLIHSVDSLKILKKINNRAKKLSIVQ 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q+N E KSG +D + ++ + + GLM + P + +
Sbjct: 110 DCLLQINISKEESKSGFYEEDIEDIINQAKELENVKIRGLMTMAPNTEDVSVIRSCFKGL 169
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGMT D+++A+ GA +R+GS IFG+R +
Sbjct: 170 KKIFDNLSNLSYNNIEMEYLSMGMTHDYKIALEEGANIIRVGSKIFGKRMYK 221
>gi|257867503|ref|ZP_05647156.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873832|ref|ZP_05653485.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877582|ref|ZP_05657235.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801559|gb|EEV30489.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807996|gb|EEV36818.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811748|gb|EEV40568.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 223
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V L AV+K VD++ RV L G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRNASDVCLTAVTKSVDTETTRVLLENGVRDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L+ DV+ FIG+LQ KV I++ D + K A + + +
Sbjct: 62 EKKAALKDYPDVRWHFIGNLQRRKVKSIINEIDFFHALDSIKLAQEIQ---KRAEHPINC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++VN E K GI + F+ ++ V GLM + P + + E+ R
Sbjct: 119 FVEVNVSQEATKQGIFVEEVMAFIEALASFDKIRVVGLMTMAPLTASKDEQHQIFKELKR 178
Query: 183 ------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LT + SMGM+ DF +AI GAT +R+G+ +F
Sbjct: 179 IQQQIADLHLTHAPCLETSMGMSNDFPIAIQEGATFIRVGTALF 222
>gi|325680288|ref|ZP_08159848.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus albus 8]
gi|324107997|gb|EGC02253.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus albus 8]
Length = 246
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 11/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +EN+ + D+VS++AV+K V +KI A+S G + EN++QE
Sbjct: 20 NVLENYKRIIYNVENAKAKYRSADDNVSIMAVTKTVAPEKINFAISQGITLLGENRVQEY 79
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K Q+ IG LQ+NKV I++ +I++V K A ++ +K R +
Sbjct: 80 LSKKDQYDKT--AQVHMIGRLQTNKVKYIINEVAMIQSVDSIKLAKEINRLAVKNDRVMD 137
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +++N G E KSG+ + + Q + ++GLM IPP +G + F + I
Sbjct: 138 VLLEINIGDEASKSGVAAEGLDELIYEAAQLENVRIKGLMAIPP-VGCGEDMFDKMHSIF 196
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
K + LSMGM+ D+ELAI G+ VRIG+ +FG R
Sbjct: 197 LRVKEMAVPGVSMETLSMGMSGDYELAIKHGSNLVRIGTALFGARNY 243
>gi|299821561|ref|ZP_07053449.1| YggS family pyridoxal phosphate enzyme [Listeria grayi DSM 20601]
gi|299817226|gb|EFI84462.1| YggS family pyridoxal phosphate enzyme [Listeria grayi DSM 20601]
Length = 230
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 16/225 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ KL KQ+IE + A R DSV L+AV+K VD+ KI G F EN+
Sbjct: 9 MNEQTKLTEVKQRIEAACKRADRSTDSVELIAVTKHVDAAKILDLHQLGLSQFGENRADV 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK K+ + +IGSLQ+ KV +++ L + ++ RE A + + +
Sbjct: 69 LVKKAAE-LKDHSIDWHYIGSLQTRKVRQVLPLISCLHSLDRESLAVEIEKRAETE---I 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P ++QVN E K G P + FV + + GLM + P + +++
Sbjct: 125 PCFLQVNITGEASKHGFSPEEALAFVNRFDFQKIKVI-GLMTMAPLTEDDAIIRQAFTDL 183
Query: 181 A-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
A R+ KLSMGMT DFE+AI GAT +RIG +
Sbjct: 184 AALGQAIQKLAVRQAPCLKLSMGMTNDFEIAIEEGATHIRIGRAL 228
>gi|260425972|ref|ZP_05779951.1| pyridoxal phosphate enzyme, YggS family [Citreicella sp. SE45]
gi|260420464|gb|EEX13715.1| pyridoxal phosphate enzyme, YggS family [Citreicella sp. SE45]
Length = 189
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 2/188 (1%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVS 92
SK+ +++ L G +F ENK+QEA+ KW + V + IG LQ+NK + +
Sbjct: 2 SKVQPLERVEAVLEEGHRLFGENKVQEARGKWPEFISRFEGVSVHLIGPLQTNKARQAME 61
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
LF I +V R K A+ ++ + + +++QVNTG E QK+G++P + F+ R
Sbjct: 62 LFSAIHSVDRPKLATTIARLAQEMGQCPDLFLQVNTGEEPQKAGVLPAEADAFIAEVRA- 120
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212
L V+GLMCIPPA P HF LL++IA L LSMGM+ DFE AIA GAT VR+GS
Sbjct: 121 LDLPVKGLMCIPPAEETPSLHFALLAKIAERNGLAGLSMGMSSDFEEAIALGATHVRVGS 180
Query: 213 GIFGERPC 220
IFGER
Sbjct: 181 AIFGERDY 188
>gi|311272381|ref|XP_003133417.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like isoform 2 [Sus scrofa]
Length = 275
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R P LVAVSK + + A + GQ IF EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRELPAIQPRLVAVSKTKPADMVIEAYNHGQRIFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA----SLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSMKLADKVNSSWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +QVNT E K G++P++T V + + L GLM I + P P
Sbjct: 137 ERLKVMVQVNTSGEESKHGLLPSETVAMVEHVKAKCPSLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F +L E+ ++ + +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 197 DFQVLVSLREELCQKLHIPVDQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYS 253
>gi|221064850|ref|ZP_03540955.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
gi|220709873|gb|EED65241.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
Length = 243
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/238 (33%), Positives = 109/238 (45%), Gaps = 17/238 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L +I + A RP SV L+AVSK + +R A+ GQ F EN +QEA
Sbjct: 3 TIENNLGQIHARIAAACASASRPVTSVQLLAVSKTFGADAVREAMLAGQRSFGENYIQEA 62
Query: 62 KKKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K +R +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VEKIAAVRAMQLAGAEALQWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQVN KSG++ Q + + L + G+M IP P
Sbjct: 123 MVRLNVCIQVNVDGGATKSGVLAEQALELAEAMVKLPNLQLRGIMSIPDDTPDFEAQCAV 182
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ I K LSMGMT D E A+A+G+T VR+GSG+FG R T
Sbjct: 183 HKRAASIFDAIKSSGLAGLEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGRRTYST 240
>gi|298492677|ref|YP_003722854.1| alanine racemase domain-containing protein ['Nostoc azollae' 0708]
gi|298234595|gb|ADI65731.1| alanine racemase domain protein ['Nostoc azollae' 0708]
Length = 222
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + SV L+AVSK V ++ +R A + G FAE+++QEA
Sbjct: 4 SISQRIVTIRASL----------PASVRLIAVSKQVTTELMREAYTAGIRDFAESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ FIG+LQSNK + + LFD I +V + A L +
Sbjct: 54 ASKQAELQDLPDITWHFIGNLQSNKAKKALELFDWIHSVDSLQIAQRLDTLASQLGVTPL 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
V +QV + KSG M ++ + Q L ++GLM IPP + + +
Sbjct: 114 VCLQVKILPDPNKSGWMVSELLADLEALNQCKNLQIQGLMTIPPFGLDHDEISSIFNHTQ 173
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A+E K+ LSMGM+ D++LA+ +GAT VR+G+ +FG R
Sbjct: 174 KLAKEIESQQWLHIKMLHLSMGMSGDYQLAVRAGATMVRLGTILFGNR 221
>gi|29375580|ref|NP_814734.1| hypothetical protein EF0998 [Enterococcus faecalis V583]
gi|227517921|ref|ZP_03947970.1| alanine racemase domain protein [Enterococcus faecalis TX0104]
gi|227555108|ref|ZP_03985155.1| alanine racemase domain protein [Enterococcus faecalis HH22]
gi|229546845|ref|ZP_04435570.1| alanine racemase domain protein [Enterococcus faecalis TX1322]
gi|229548939|ref|ZP_04437664.1| alanine racemase domain protein [Enterococcus faecalis ATCC 29200]
gi|255974067|ref|ZP_05424653.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256617922|ref|ZP_05474768.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761756|ref|ZP_05502336.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852651|ref|ZP_05558022.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256957091|ref|ZP_05561262.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960182|ref|ZP_05564353.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|257077887|ref|ZP_05572248.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257081251|ref|ZP_05575612.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083909|ref|ZP_05578270.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086357|ref|ZP_05580718.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089407|ref|ZP_05583768.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415617|ref|ZP_05592611.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257418588|ref|ZP_05595582.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257421247|ref|ZP_05598237.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382547|ref|ZP_06628481.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
R712]
gi|293387852|ref|ZP_06632391.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
S613]
gi|300860004|ref|ZP_07106092.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TUSoD Ef11]
gi|307268078|ref|ZP_07549466.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4248]
gi|307275481|ref|ZP_07556623.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2134]
gi|307278951|ref|ZP_07560010.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0860]
gi|307289400|ref|ZP_07569354.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0109]
gi|307290040|ref|ZP_07569964.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0411]
gi|312901043|ref|ZP_07760334.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0470]
gi|312904560|ref|ZP_07763718.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0635]
gi|312906850|ref|ZP_07765847.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 512]
gi|312952730|ref|ZP_07771592.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0102]
gi|312978895|ref|ZP_07790621.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 516]
gi|29343041|gb|AAO80804.1| conserved hypothetical protein TIGR00044 [Enterococcus faecalis
V583]
gi|227074675|gb|EEI12638.1| alanine racemase domain protein [Enterococcus faecalis TX0104]
gi|227175776|gb|EEI56748.1| alanine racemase domain protein [Enterococcus faecalis HH22]
gi|229305960|gb|EEN71956.1| alanine racemase domain protein [Enterococcus faecalis ATCC 29200]
gi|229308010|gb|EEN73997.1| alanine racemase domain protein [Enterococcus faecalis TX1322]
gi|255966939|gb|EET97561.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256597449|gb|EEU16625.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683007|gb|EEU22702.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711996|gb|EEU27033.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256947587|gb|EEU64219.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256950678|gb|EEU67310.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256985917|gb|EEU73219.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256989281|gb|EEU76583.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991939|gb|EEU79241.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994387|gb|EEU81689.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998219|gb|EEU84739.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157445|gb|EEU87405.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160416|gb|EEU90376.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257163071|gb|EEU93031.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080095|gb|EFE17459.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
R712]
gi|291082699|gb|EFE19662.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
S613]
gi|295113826|emb|CBL32463.1| pyridoxal phosphate enzyme, YggS family [Enterococcus sp. 7L76]
gi|300850822|gb|EFK78571.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TUSoD Ef11]
gi|306498882|gb|EFM68376.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0411]
gi|306499655|gb|EFM69018.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0109]
gi|306504338|gb|EFM73549.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0860]
gi|306507869|gb|EFM76997.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2134]
gi|306515719|gb|EFM84246.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4248]
gi|310627104|gb|EFQ10387.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 512]
gi|310629246|gb|EFQ12529.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0102]
gi|310632073|gb|EFQ15356.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0635]
gi|311288332|gb|EFQ66888.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 516]
gi|311291869|gb|EFQ70425.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0470]
gi|315026974|gb|EFT38906.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2137]
gi|315029687|gb|EFT41619.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4000]
gi|315031716|gb|EFT43648.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0017]
gi|315034227|gb|EFT46159.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0027]
gi|315144383|gb|EFT88399.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2141]
gi|315147949|gb|EFT91965.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4244]
gi|315149521|gb|EFT93537.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0012]
gi|315153074|gb|EFT97090.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0031]
gi|315156847|gb|EFU00864.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0043]
gi|315157633|gb|EFU01650.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0312]
gi|315162937|gb|EFU06954.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0645]
gi|315165137|gb|EFU09154.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1302]
gi|315168036|gb|EFU12053.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1341]
gi|315171935|gb|EFU15952.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1342]
gi|315173288|gb|EFU17305.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1346]
gi|315574258|gb|EFU86449.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0309B]
gi|315577386|gb|EFU89577.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0630]
gi|315581587|gb|EFU93778.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0309A]
gi|323480237|gb|ADX79676.1| alanine racemase, N-terminal domain protein [Enterococcus faecalis
62]
gi|327534584|gb|AEA93418.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecalis
OG1RF]
Length = 225
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 18/230 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D+Q IG+LQ KV I++ D + A + + ++ +
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQ---KRATKVIRC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++VN E K G F+ ++ + GLM + P + + E+ +
Sbjct: 119 FVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFREL-K 177
Query: 183 ECKL------------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E ++ T+LSMGM+ DF +A+ GAT +RIG+ +F R
Sbjct: 178 ELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF--RDA 225
>gi|332361767|gb|EGJ39571.1| cell division protein YlmE [Streptococcus sanguinis SK1056]
Length = 223
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAQHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAYGSTYVRIGTAFF 222
>gi|239636335|ref|ZP_04677337.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus warneri
L37603]
gi|239597690|gb|EEQ80185.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus warneri
L37603]
Length = 223
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +I + +++AV+K V ++ + A G F EN+L+ K
Sbjct: 4 VKENLAQINSEINEHREKSNIS-TQPNVIAVTKYVTIERAKEAYQAGIRHFGENRLEGFK 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D L FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 63 EKKEA--LPKDAVLHFIGSLQSRKVKDVINDVDYFHALDRMSLAKEINK---RAEHTISC 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QVN E K GI ++ F+ +Q + + GLM + P + L ++
Sbjct: 118 FLQVNVSGESSKHGISLDEVNAFIDEIKQFENIKIVGLMTMAPYTDDEGYIQSLFRKLRT 177
Query: 182 -----RECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L +LSMGM+ D+ +AI GAT VRIG+ + GE
Sbjct: 178 KRDEIKQLNLEYAPCEELSMGMSNDYPIAIEEGATFVRIGTKLVGE 223
>gi|169831572|ref|YP_001717554.1| alanine racemase domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169638416|gb|ACA59922.1| alanine racemase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 234
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L+ +++I +A A R ++V LVAVSK + ++IR A+ G IF E+++QE
Sbjct: 5 DVVHNLEQVRRRIAAAARRAGRDPETVGLVAVSKSIGPEQIRKAMEAGVQIFGESRVQEL 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + FIG LQ NKV +V ++I ++ R A L +Q +
Sbjct: 65 VRKHPDVP---GPRWHFIGHLQRNKVKYLVGRVELIHSLDRWSLAEELDRRAREQGQPFR 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QV G E K G+ + DFV L VEGLM + P +P+ E+
Sbjct: 122 VLVQVKVGAEEGKFGVEAVKVGDFVNRVAGLRGLRVEGLMAMAPFCDDPEQARPYFREVK 181
Query: 182 R---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + LSMGM+ D+E+A+ GA VR+G+ IFG R
Sbjct: 182 RLFDGLAGVPGFERRYLSMGMSSDYEVAVEEGANLVRVGTAIFGPR 227
>gi|304437222|ref|ZP_07397182.1| YggS family pyridoxal phosphate enzyme [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369714|gb|EFM23379.1| YggS family pyridoxal phosphate enzyme [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 239
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 23/239 (9%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVI 52
MS +G ++Q + +I + A+R V L+AV+K ++ A+ G +
Sbjct: 1 MSEGTMIGEQIQKVRAEIMAA--RARRTHVSKDAPVELIAVTKNHPVAAMQEAIDAGIMN 58
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
EN++QEA K E +V+ IG LQ+NK V FD+I +V A ++
Sbjct: 59 IGENRIQEALDKAE--TLEREVKWHLIGHLQTNKAKYAVRQFDLIHSVDSVHLAQAVNRA 116
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
K + + +QVN E KSG+ + + + ++G MCI P + +
Sbjct: 117 AEKFGKVQNILVQVNLAREESKSGVYREDLDELLAAIDGMDSVRLQGFMCIAPNYEDVEQ 176
Query: 173 HFYLLSEIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 177 CRPLFRAMYELYGTIKAAEPHKADIRYLSMGMTHDYRIAVEEGANLVRVGTAIFGARNY 235
>gi|291296085|ref|YP_003507483.1| alanine racemase domain-containing protein [Meiothermus ruber DSM
1279]
gi|290471044|gb|ADD28463.1| alanine racemase domain protein [Meiothermus ruber DSM 1279]
Length = 214
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 13/219 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQ 59
MSL ++IE + R V LVAV+K +IR L G E+++Q
Sbjct: 1 MSLP----GVLERIEKACGRVGRDPKGVRLVAVTKEHTVAEIREQVLRYGHFPLGESRIQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +P E + + FIG LQ NK V ++I ++ + A ++ + ++Q +
Sbjct: 57 EA----LPKMGELEAEWHFIGPLQRNKAKFAVRF-ELIHSIDSLRLAEAVARKALEQGKV 111
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V +++N G E QK G + + + + L VEGLM + P P +P F
Sbjct: 112 QRVLLELNLGREPQKHGFLEEELPQAIAQIQALEGLRVEGLMTVAPYTDTPETVRPIFAQ 171
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
LS +A L + SMGM+ D E+A+ GAT VR+G IF
Sbjct: 172 LSRLADRYGLPERSMGMSGDLEVAVEEGATLVRVGRAIF 210
>gi|123965691|ref|YP_001010772.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9515]
gi|123200057|gb|ABM71665.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9515]
Length = 212
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 14/223 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + K+++ +V+L+AVSK S+ I++ GQ F E++ QE
Sbjct: 1 MEIS-NYLQIKKEL----------PLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ D++ FIG +QSNK+ +IV FD I +V + +S ++ +
Sbjct: 50 AIEKKLLLKDFKDIKWHFIGRIQSNKIRKIVQNFDYIHSVDSYEKLLKISNIAFEEHKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P +Q + ++GLM I P N + L E
Sbjct: 110 LIMLQVKLMDDPSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNSTQNIKLFKEC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A KL SMGM++D++ A+ +G+T +R+GS IFG R
Sbjct: 170 RNLANSLKLHDCSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY 212
>gi|56752042|ref|YP_172743.1| hypothetical protein syc2033_d [Synechococcus elongatus PCC 6301]
gi|81300869|ref|YP_401077.1| hypothetical protein Synpcc7942_2060 [Synechococcus elongatus PCC
7942]
gi|56687001|dbj|BAD80223.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169750|gb|ABB58090.1| Protein of unknown function UPF0001 [Synechococcus elongatus PCC
7942]
Length = 221
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + ++ SV L+AVSK + IR A + GQ F EN++QEA
Sbjct: 4 IAERLASLRSQL----------PPSVQLIAVSKNHPAAAIREAYAAGQRHFGENRVQEAI 53
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ +G LQSNK + V FD I +V A L + R +
Sbjct: 54 AKQAELTDLPDLTWHLLGKLQSNKARKAVEHFDWIHSVDSWALAERLDRIAGELGRSPKL 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----------AMGNPKP 172
+QV + K+G P + + Q Q+ + GLM I P +
Sbjct: 114 CLQVKLLPDPNKAGWDPADLRAELPQLSQLQQVQIRGLMVIAPLGLTAAETQALFAQART 173
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + A + +LT+LSMGM+ D+ LA+A GAT +R+G+ +FG R
Sbjct: 174 FAAELQQQAPQLRLTELSMGMSSDWPLAVAEGATWIRVGTQLFGPR 219
>gi|169827022|ref|YP_001697180.1| hypothetical protein Bsph_1446 [Lysinibacillus sphaericus C3-41]
gi|168991510|gb|ACA39050.1| UPF0001 protein [Lysinibacillus sphaericus C3-41]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L I + R ++V ++AV+K V ++ + A+ G EN+ +
Sbjct: 8 ILANLNKLNDLIAAAETRVNREANNVQIIAVTKEVSVERTQEAIEAGLTHLGENRPEGLN 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K ++ DV +IGSLQ+ KV ++++ D + ++ R A + + + +
Sbjct: 68 RKISAIQA--DVNWHYIGSLQTRKVKQVINSIDFLHSLDRLSLAEEIEK---RAVKPVKC 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+IQVN E K G+ + FV R ++ V GLM + P + + ++ +
Sbjct: 123 FIQVNVSGEESKHGLSMEEVLPFVESLRSFTKVQVVGLMTMAPNTEDEALIRSVFKQLKQ 182
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 183 CQQQIAEQGFAHAPCTELSMGMSNDFEIAVEEGATFVRVGTALVGN 228
>gi|227498577|ref|ZP_03928721.1| alanine racemase [Acidaminococcus sp. D21]
gi|226904033|gb|EEH89951.1| alanine racemase [Acidaminococcus sp. D21]
Length = 234
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L KL ++KI+ + L K K D V+++AV+K + + AL G EN++Q
Sbjct: 2 LSEKLASVQKKIDEALALRKEKKVTGDMVTILAVTKNHPPEVVTEALDAGLTEIGENRVQ 61
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K IG LQ+NK V FD+IE+ K + L + +
Sbjct: 62 EAMHKQE--VLPKRGHWHLIGHLQTNKAKHAVEHFDLIESADSAKILTHLDRAAEQVGKV 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V +Q+N E QKSG P + V L V G+M I A + +
Sbjct: 120 QDVLLQINEAGESQKSGFQPADFRAIVKTLDAYPHLRVRGVMVIAQATDQVEETRPVFRA 179
Query: 180 -------IARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K + LSMGMT D+ +A+ GA +R+GS +FG R
Sbjct: 180 GYEDFLFLRDALKHEDVNILSMGMTHDYWIAVEEGANEIRVGSALFGARDY 230
>gi|327469025|gb|EGF14497.1| cell division protein YlmE [Streptococcus sanguinis SK330]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAQHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|325971292|ref|YP_004247483.1| hypothetical protein SpiBuddy_1464 [Spirochaeta sp. Buddy]
gi|324026530|gb|ADY13289.1| protein of unknown function UPF0001 [Spirochaeta sp. Buddy]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I +A LA R + + L+AVSK I+ CGQ++F EN++Q
Sbjct: 1 MTDLQRNREELLAEIGQAATLAGRKPEDIKLMAVSKTHPFSAIQELYGCGQLVFGENRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++K+ LR +Q+ IG LQ+NK + ++ + + + L +
Sbjct: 61 EVEQKFPSLRPSL-MQVHLIGHLQTNKAKKA---LELFDGIDSVDSLKLAQKLEALAEKP 116
Query: 120 LPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ + +++ T E KSG + + + + V+GLM I P GN K S
Sbjct: 117 VSILLELRTAPEETKSGFENETELFRALDVLSTFSNVRVKGLMTIGPLHGNEKEIREAFS 176
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ DF LAIA G+T +R+GS +FG+R
Sbjct: 177 LLRETAERAKVRFSHLDFSTLSMGMSSDFRLAIAEGSTQIRVGSRLFGKREA 228
>gi|126649716|ref|ZP_01721952.1| hypothetical protein BB14905_16000 [Bacillus sp. B14905]
gi|126593435|gb|EAZ87380.1| hypothetical protein BB14905_16000 [Bacillus sp. B14905]
Length = 255
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L I + R ++V ++AV+K V ++ + A+ G EN+ +
Sbjct: 25 ILANLNKLNDLIAAAETRVNREANNVQIIAVTKEVSVERTQEAIEAGLTHLGENRPEGLN 84
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K ++ + +IGSLQ+ KV ++++ D + ++ R A + + + +
Sbjct: 85 RKLSAIQAHVN--WHYIGSLQTRKVKQVINSIDYLHSLDRLSLAEEIEK---RAVKPVKC 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+IQVN E K G+ + FV + ++ V GLM + P + + ++ +
Sbjct: 140 FIQVNVSGEESKHGLSMEEVLPFVESLKSFTKVEVVGLMTMAPNTEDEALIRTVFKQLKQ 199
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 200 CQQQIAEQGFAHAPCTELSMGMSNDFEIAVEEGATFVRVGTALVGN 245
>gi|327284097|ref|XP_003226775.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Anolis carolinensis]
Length = 276
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 26/239 (10%)
Query: 7 LQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L+ +++++ + RP+ LVAVSK ++ + A + GQ F EN +QE
Sbjct: 16 LRTVREQVQQATAR--RPQSLPAIQPRLVAVSKTKPAEMVIEAYNLGQRSFGENYVQELL 73
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIK 115
+K R D++ FIG LQ N V++++ + ++ + + S +
Sbjct: 74 EKASDSRILSSCPDIKWHFIGHLQKNNVNKLIGVPNLFMLETVDSLKLADRVNASWQKKG 133
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN----P 170
S L + +Q+NT E K G+ P +T V ++ L GLM I + P
Sbjct: 134 CSEKLKIMVQINTSGEDSKHGLPPGETVTTVAHILQKCPGLEFVGLMTIGSFGHDLSMGP 193
Query: 171 KPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F +L E+ + + +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 194 NPDFQMLISLRQEMCDKLNIPIEKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGERDYS 252
>gi|315194074|gb|EFU24467.1| hypothetical protein CGSSa00_05193 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGETSKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|325694120|gb|EGD36038.1| cell division protein YlmE [Streptococcus sanguinis SK150]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASDEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|16930823|ref|NP_473398.1| proline synthase co-transcribed bacterial homolog protein isoform a
[Mus musculus]
gi|12230502|sp|Q9Z2Y8|PROSC_MOUSE RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|4126980|dbj|BAA36843.1| Proline synthetase associated [Mus musculus]
gi|26328127|dbj|BAC27804.1| unnamed protein product [Mus musculus]
gi|148700851|gb|EDL32798.1| proline synthetase co-transcribed [Mus musculus]
Length = 274
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ S R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S + +
Sbjct: 77 ASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQKKGPT 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G++P++T V + L GLM I + P P
Sbjct: 137 EPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E+ + + +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 197 DFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYS 253
>gi|258423768|ref|ZP_05686654.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9635]
gi|257846000|gb|EEV70028.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9635]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSKKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|114051511|ref|NP_001040304.1| proline synthetase co-transcribed bacterial-like protein [Bombyx
mori]
gi|87248205|gb|ABD36155.1| proline synthetase co-transcribed bacterial-like protein [Bombyx
mori]
Length = 262
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 23/238 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ +IE + + + LVAVSK+ + I A + GQ F EN + E K
Sbjct: 23 LKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDK 82
Query: 65 WIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-----MIKQ 116
K D++ FIG LQ+NK+++++ + + + +L K+
Sbjct: 83 ASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKE 142
Query: 117 SRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PK 171
L V +QVNT E KSG+ P TK + L+ +GLM I + P
Sbjct: 143 KERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPN 202
Query: 172 PHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P + L E+ + L +LSMGM+ DF AI GAT+VR+GS IFG RP +
Sbjct: 203 PDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAIELGATTVRVGSTIFGARPPK 260
>gi|325845144|ref|ZP_08168453.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sp. HGF1]
gi|325488809|gb|EGC91209.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sp. HGF1]
Length = 216
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 19/224 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +Q I+ +R ++ V +VA +K V+ ++++ CG I EN++
Sbjct: 1 MNIEKNVEQVQQDIQA----CQRDREKVRIVAATKYVNVEQMKRLYDCGITIMGENRVDA 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + FIG+LQS KV E+++ DV+ ++ R A + + + L
Sbjct: 57 LLEKKAQLHLPI--EWHFIGTLQSRKVKEVINEIDVLHSLDRLSLAKEIEKY---RDKPL 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQVN E K G+ ++ F+ ++ V GLM + P N SE+
Sbjct: 112 KCLIQVNISGEKTKHGLAKDEVVTFIEQLNSFSKIEVIGLMTMAPNTENELTLRRCFSEL 171
Query: 181 ARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +L +LSMGM+ D+ +A+ GAT VR+GS +F
Sbjct: 172 -KQLQLDLEKNYKSCQELSMGMSNDYLIAVEEGATYVRLGSILF 214
>gi|125717512|ref|YP_001034645.1| pyridoxal 5'-phosphate dependent enzymes class III [Streptococcus
sanguinis SK36]
gi|125497429|gb|ABN44095.1| PyridoxaL 5'-phosphate Dependent Enzymes class III, putative
[Streptococcus sanguinis SK36]
gi|324993405|gb|EGC25325.1| cell division protein YlmE [Streptococcus sanguinis SK405]
gi|324995283|gb|EGC27195.1| cell division protein YlmE [Streptococcus sanguinis SK678]
gi|327461679|gb|EGF08010.1| cell division protein YlmE [Streptococcus sanguinis SK1]
gi|327489532|gb|EGF21325.1| cell division protein YlmE [Streptococcus sanguinis SK1058]
gi|332366084|gb|EGJ43840.1| cell division protein YlmE [Streptococcus sanguinis SK1059]
Length = 223
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|160899144|ref|YP_001564726.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160364728|gb|ABX36341.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 283
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + ++ + A R SV L+ VSK +R+A + G + ENK+QEA
Sbjct: 35 DFRHNLATVQARMAAACRRAGRDPASVRLLPVSKTKPESSLRLAHAAGCRMLGENKVQEA 94
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW ++ D+Q IG LQ+NK + + + + A L + + R L
Sbjct: 95 FGKWEAMQDLADLQWSVIGHLQTNKARLVARFASEFQALDNLRVAEALDRRLQAEGRALD 154
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V++QVNT E K G+ P++ + FV L V GLM + + +
Sbjct: 155 VFVQVNTSGEASKYGLPPDEVQGFVQALPAFSALRVRGLMTLALFSSEAERVRQCFVLLR 214
Query: 182 RE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 215 RLRDQLRQSAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 262
>gi|239978967|ref|ZP_04701491.1| hypothetical protein SalbJ_06012 [Streptomyces albus J1074]
gi|291450846|ref|ZP_06590236.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353795|gb|EFE80697.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 239
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q+I + A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLERVEQRIAGACAAAGRDRDEVTLIVVTKTYPASDVRLLAELGVGQVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ F+G LQ+NK + D +++V R K + LS + R L
Sbjct: 68 PKAAACADL-DLTWHFVGQLQTNKARSVAGYADFVQSVDRAKLVTSLSSAAERAGRELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
+QV G + G+ P+ ++ L L + G+M + P G P F
Sbjct: 127 LVQVALDAEAGGRGDRGGVAPDGVEELAGLIEAAPGLRLGGVMTVAPLSGTYAGRPAAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L EI+ + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 ERLREISTSLRAAWPAATMVSAGMSGDLEHAVAAGATHVRVGSAVLGVRPA 237
>gi|238060244|ref|ZP_04604953.1| alanine racemase [Micromonospora sp. ATCC 39149]
gi|237882055|gb|EEP70883.1| alanine racemase [Micromonospora sp. ATCC 39149]
Length = 250
Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 13/225 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I ++ R + V+++AV+K + + S G V EN+ QEA K
Sbjct: 22 LARVRARIADACAAVGRDRTEVTMIAVTKTYPASDVLALASLGVVDMGENRDQEAAGKAA 81
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSR-EKTASLLSLEMIKQSRFLPVYI 124
+ + FIG LQ NK +V DV+++V +L + + + R + V++
Sbjct: 82 EVAAAGATPRWHFIGQLQRNKCRSVVRYADVVQSVDSVRLARALDAAALTNRDRPVDVFV 141
Query: 125 QVNTGYEIQKSGIMPNQTKDF------VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
QV+ + + G +P L + GLM + P P+ F L+
Sbjct: 142 QVSVDADPARGGALPGSVDPDAGLGPVAEAVAGAAGLRLAGLMAVAPLGWEPERAFARLA 201
Query: 179 EIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR + LS GM+ D E+AI GAT VR+GS + G R
Sbjct: 202 EVARTFRTAHPEAVALSAGMSGDLEIAIEYGATHVRVGSALLGMR 246
>gi|212636422|ref|YP_002312947.1| hypothetical protein swp_3673 [Shewanella piezotolerans WP3]
gi|212557906|gb|ACJ30360.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 214
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 75/200 (37%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSE 89
+AVSK +++I A + GQ F EN +QE ++K + D++ FIG LQSNK
Sbjct: 1 MAVSKTKPNEQIIEAYTAGQRRFGENYVQEGEEKVKSLSQDYPDIEWHFIGPLQSNKTKI 60
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I LFD + TV REK AS L+ + + L V IQVN E KSG+ +
Sbjct: 61 IAGLFDWMHTVEREKIASRLNDQRPEHMSPLNVCIQVNISQEASKSGVTTAEIAALAEKI 120
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAI 201
LN+ GLM IP A + L+E+ ++ + + LS+GM+ D ELA+
Sbjct: 121 HLLPNLNLRGLMAIPSASVDNVTAIAELAELQKQYQRLSAKYPSVDTLSVGMSNDLELAV 180
Query: 202 ASGATSVRIGSGIFGERPCQ 221
A G+T VRIGS IFG R
Sbjct: 181 AHGSTMVRIGSAIFGARDYP 200
>gi|15924178|ref|NP_371712.1| hypothetical protein SAV1188 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926771|ref|NP_374304.1| hypothetical protein SA1031 [Staphylococcus aureus subsp. aureus
N315]
gi|49483351|ref|YP_040575.1| hypothetical protein SAR1164 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57651758|ref|YP_186064.1| hypothetical protein SACOL1201 [Staphylococcus aureus subsp. aureus
COL]
gi|151221310|ref|YP_001332132.1| hypothetical protein NWMN_1098 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979509|ref|YP_001441768.1| hypothetical protein SAHV_1178 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509362|ref|YP_001575021.1| hypothetical protein USA300HOU_1125 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140640|ref|ZP_03565133.1| hypothetical protein SauraJ_03256 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253314958|ref|ZP_04838171.1| hypothetical protein SauraC_02035 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005975|ref|ZP_05144576.2| hypothetical protein SauraM_05880 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425242|ref|ZP_05601667.1| YlmE protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427902|ref|ZP_05604300.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430535|ref|ZP_05606917.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433296|ref|ZP_05609654.1| YlmE protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436138|ref|ZP_05612185.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257795756|ref|ZP_05644735.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9781]
gi|258415980|ref|ZP_05682250.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258419727|ref|ZP_05682694.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9719]
gi|258438769|ref|ZP_05689922.1| YlmE protein [Staphylococcus aureus A9299]
gi|258444525|ref|ZP_05692854.1| YlmE protein [Staphylococcus aureus A8115]
gi|258447642|ref|ZP_05695786.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6300]
gi|258449484|ref|ZP_05697587.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6224]
gi|258451886|ref|ZP_05699907.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5948]
gi|258454863|ref|ZP_05702827.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5937]
gi|262048761|ref|ZP_06021643.1| hypothetical protein SAD30_1591 [Staphylococcus aureus D30]
gi|262051688|ref|ZP_06023907.1| hypothetical protein SA930_1515 [Staphylococcus aureus 930918-3]
gi|269202803|ref|YP_003282072.1| hypothetical protein SAAV_1159 [Staphylococcus aureus subsp. aureus
ED98]
gi|282892674|ref|ZP_06300909.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8117]
gi|282903740|ref|ZP_06311628.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus C160]
gi|282905504|ref|ZP_06313359.1| pyridoxal phosphate enzyme YggS family protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908480|ref|ZP_06316310.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910761|ref|ZP_06318564.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913964|ref|ZP_06321751.1| YlmE protein [Staphylococcus aureus subsp. aureus M899]
gi|282916438|ref|ZP_06324200.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282918886|ref|ZP_06326621.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
C427]
gi|282919969|ref|ZP_06327698.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9765]
gi|282924009|ref|ZP_06331685.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282929233|ref|ZP_06336808.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A10102]
gi|283770250|ref|ZP_06343142.1| YlmE [Staphylococcus aureus subsp. aureus H19]
gi|283957931|ref|ZP_06375382.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus A017934/97]
gi|284024112|ref|ZP_06378510.1| hypothetical protein Saura13_05954 [Staphylococcus aureus subsp.
aureus 132]
gi|293500997|ref|ZP_06666848.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|293509955|ref|ZP_06668664.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|293526544|ref|ZP_06671229.1| YlmE protein [Staphylococcus aureus subsp. aureus M1015]
gi|295427674|ref|ZP_06820306.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296276136|ref|ZP_06858643.1| hypothetical protein SauraMR_07292 [Staphylococcus aureus subsp.
aureus MR1]
gi|297591368|ref|ZP_06950006.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|304381252|ref|ZP_07363905.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|4009493|gb|AAC95460.1| YlmE [Staphylococcus aureus]
gi|13700987|dbj|BAB42283.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246958|dbj|BAB57350.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|49241480|emb|CAG40166.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57285944|gb|AAW38038.1| conserved hypothetical protein TIGR00044 [Staphylococcus aureus
subsp. aureus COL]
gi|150374110|dbj|BAF67370.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721644|dbj|BAF78061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368171|gb|ABX29142.1| hypothetical protein USA300HOU_1125 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257271699|gb|EEV03837.1| YlmE protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274743|gb|EEV06230.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278663|gb|EEV09282.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281389|gb|EEV11526.1| YlmE protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284420|gb|EEV14540.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257789728|gb|EEV28068.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9781]
gi|257839316|gb|EEV63790.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257844312|gb|EEV68694.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9719]
gi|257848028|gb|EEV72021.1| YlmE protein [Staphylococcus aureus A9299]
gi|257850018|gb|EEV73971.1| YlmE protein [Staphylococcus aureus A8115]
gi|257853833|gb|EEV76792.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6300]
gi|257857472|gb|EEV80370.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6224]
gi|257860494|gb|EEV83321.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5948]
gi|257863246|gb|EEV86010.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5937]
gi|259160423|gb|EEW45448.1| hypothetical protein SA930_1515 [Staphylococcus aureus 930918-3]
gi|259163217|gb|EEW47777.1| hypothetical protein SAD30_1591 [Staphylococcus aureus D30]
gi|262075093|gb|ACY11066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED98]
gi|269940682|emb|CBI49061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313981|gb|EFB44373.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282316696|gb|EFB47070.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
C427]
gi|282319878|gb|EFB50226.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282322032|gb|EFB52356.1| YlmE protein [Staphylococcus aureus subsp. aureus M899]
gi|282325366|gb|EFB55675.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327542|gb|EFB57825.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330796|gb|EFB60310.1| pyridoxal phosphate enzyme YggS family protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282589192|gb|EFB94289.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A10102]
gi|282594685|gb|EFB99669.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9765]
gi|282595358|gb|EFC00322.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus C160]
gi|282764671|gb|EFC04796.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8117]
gi|283460397|gb|EFC07487.1| YlmE [Staphylococcus aureus subsp. aureus H19]
gi|283790080|gb|EFC28897.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285816870|gb|ADC37357.1| protein of unknown function [Staphylococcus aureus 04-02981]
gi|290920616|gb|EFD97679.1| YlmE protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096002|gb|EFE26263.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|291467405|gb|EFF09922.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|295128032|gb|EFG57666.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576254|gb|EFH94970.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|302332793|gb|ADL22986.1| alanine racemase [Staphylococcus aureus subsp. aureus JKD6159]
gi|302751011|gb|ADL65188.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340235|gb|EFM06176.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312438435|gb|ADQ77506.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH60]
gi|312829582|emb|CBX34424.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130979|gb|EFT86963.1| hypothetical protein CGSSa03_05529 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196918|gb|EFU27261.1| hypothetical protein CGSSa01_04090 [Staphylococcus aureus subsp.
aureus CGS01]
gi|329725028|gb|EGG61524.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21189]
gi|329727366|gb|EGG63822.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21172]
Length = 224
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|284048328|ref|YP_003398667.1| alanine racemase domain protein [Acidaminococcus fermentans DSM
20731]
gi|283952549|gb|ADB47352.1| alanine racemase domain protein [Acidaminococcus fermentans DSM
20731]
Length = 234
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 19/234 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK-----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
L +K+ + KI+ + LA R + D V+++AV+K + + L+ G EN+
Sbjct: 2 LQDKIAAVEAKIQEA--LANRKEPKATGDKVTILAVTKNHPADIVTETLAAGLTEIGENR 59
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QEA K IG LQ+NK V F +IE+V K + L +
Sbjct: 60 VQEAMHKQA--VLPPGGNWHLIGHLQTNKARHAVEHFALIESVDSLKLMAHLEKAAAELD 117
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----------PAM 167
+ V +Q+N E+QKSG P + V + + V G+M I P
Sbjct: 118 KVQDVLLQINEAGEVQKSGFAPEDFRAAVPELKNYPHIRVRGVMVIAQATDHVEETRPVF 177
Query: 168 GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + + + LSMGMT D+ +A+ GA VR+GS +FG R
Sbjct: 178 AAGYRDFLFLRDALPDIPVDILSMGMTHDYWIAVEEGANEVRVGSALFGARDYS 231
>gi|87198458|ref|YP_495715.1| hypothetical protein Saro_0433 [Novosphingobium aromaticivorans DSM
12444]
gi|87134139|gb|ABD24881.1| Protein of unknown function UPF0001 [Novosphingobium
aromaticivorans DSM 12444]
Length = 191
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/191 (39%), Positives = 113/191 (59%), Gaps = 2/191 (1%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKV 87
+LVAVSK ++ I ++ GQ +F EN++QEA+ KW +R D+ L IG LQSNK
Sbjct: 2 TLVAVSKTKPAEAILDLVAQGQRVFGENRVQEAQAKWPAIRAAHPDISLHLIGQLQSNKA 61
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ ++LFD I ++ R + L+ K + +P ++QVN G E QK G ++
Sbjct: 62 EDAIALFDCIHSLDRPSLVAALAKAQDKLGKRVPCFVQVNIGAEEQKGGCAVADL-PALL 120
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
++ ++V GLMC+PPA P F LL ++A + L+ LSMGM+ D E A+ GAT
Sbjct: 121 ADAREKGIDVVGLMCVPPAGIEAAPFFALLDKLADDNGLSGLSMGMSDDLETAVQLGATH 180
Query: 208 VRIGSGIFGER 218
VR+GS +FGER
Sbjct: 181 VRVGSALFGER 191
>gi|332362880|gb|EGJ40673.1| cell division protein YlmE [Streptococcus sanguinis SK49]
Length = 223
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLVEDLEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|298694479|gb|ADI97701.1| hypothetical protein SAOV_1189 [Staphylococcus aureus subsp. aureus
ED133]
gi|323440960|gb|EGA98667.1| hypothetical protein SAO11_0027 [Staphylococcus aureus O11]
gi|323442277|gb|EGA99907.1| hypothetical protein SAO46_1759 [Staphylococcus aureus O46]
Length = 224
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIGDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|253733573|ref|ZP_04867738.1| possible TIM-barrel fold protein [Staphylococcus aureus subsp.
aureus TCH130]
gi|253728443|gb|EES97172.1| possible TIM-barrel fold protein [Staphylococcus aureus subsp.
aureus TCH130]
Length = 224
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV +++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKGVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|322375674|ref|ZP_08050186.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C300]
gi|321279382|gb|EFX56423.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C300]
Length = 223
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQA-LKDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKRT---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + Q+ GLM + P + +
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDELKEIFKDT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNIPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|329313856|gb|AEB88269.1| Possible enzyme with a TIM-barrel fold [Staphylococcus aureus
subsp. aureus T0131]
Length = 224
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KYFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|327482661|gb|AEA85971.1| TIM-barrel fold family protein [Pseudomonas stutzeri DSM 4166]
Length = 201
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 75/196 (38%), Positives = 96/196 (48%), Gaps = 6/196 (3%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + IR A + G F EN LQEA K L + FIG +QSNK
Sbjct: 3 LLAVSKTQPAAAIRDAFAAGLRDFGENYLQEALDKQAELDDL-PLTWHFIGPIQSNKTKA 61
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I FD + +V R K A LS + L + +QVN E KSG P + +
Sbjct: 62 IAEHFDWVHSVDRLKIAQRLSDQRPAALPPLNICLQVNVSGEASKSGCAPQEVQQLARAI 121
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAREC--KLTKLSMGMTRDFELAIASG 204
+L + GLMCIP +P F L ++ E L LSMGM++D E AIA G
Sbjct: 122 TALPRLRLRGLMCIPAPSEDPAEQRAAFARLRQLRDELALDLDTLSMGMSQDLEAAIAEG 181
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIG+ +FG R
Sbjct: 182 ATWVRIGTALFGARDY 197
>gi|326404445|ref|YP_004284527.1| hypothetical protein ACMV_22980 [Acidiphilium multivorum AIU301]
gi|325051307|dbj|BAJ81645.1| hypothetical protein ACMV_22980 [Acidiphilium multivorum AIU301]
Length = 229
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/218 (37%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I +A R V+L+AVSK I AL+ GQ++F EN++QEA
Sbjct: 13 TIRPALDSIRARIATAAQ--GRA---VTLIAVSKTKPVAAIEAALAAGQLVFGENRVQEA 67
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + L IG LQ+NK E V+LFD I+++ R K A L+ + +
Sbjct: 68 AAKFPLLRAAHPGLALHLIGPLQTNKAREAVALFDCIDSLDRPKLADALAAAAERAGQMP 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+G+ P + F+ R ++ + GLM IPP +P PHF L +
Sbjct: 128 RLLVQVNVGDEPQKAGVSPAEADGFIRAMRARFGERLRGLMAIPPLGEDPAPHFGTLVAM 187
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L S+GM+ DFE AIA GAT VR+GS +FG R
Sbjct: 188 ADTHGLPVRSIGMSDDFETAIACGATEVRVGSALFGAR 225
>gi|324990667|gb|EGC22603.1| cell division protein YlmE [Streptococcus sanguinis SK353]
Length = 223
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQDNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLIWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|314933364|ref|ZP_07840729.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus caprae C87]
gi|313653514|gb|EFS17271.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus caprae C87]
Length = 224
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +QKI + ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLRQIEQKISEHLEKSS-NSAHPHVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K D FIGSLQS KV E+++ D + R A ++ + +
Sbjct: 60 FKEKKA--TLPDDAVFHFIGSLQSRKVKEVINEVDYFHALDRLSLAKEINK---RADHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI ++ +F+ + + V GLM + P + + +++
Sbjct: 115 SCFLQVNVSGEESKHGIALDEVNEFLKELKAYENIKVIGLMTMAPLTDDSAYIKSIFNDL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|315658525|ref|ZP_07911397.1| YggS family pyridoxal phosphate enzyme [Staphylococcus lugdunensis
M23590]
gi|315496854|gb|EFU85177.1| YggS family pyridoxal phosphate enzyme [Staphylococcus lugdunensis
M23590]
Length = 222
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L +Q+IE+ + ++++AV+K V ++ + A G F EN+L+
Sbjct: 1 MDVKSNLAHIQQEIESHKKKSTIDSH-INVIAVTKYVTIERAKEAFDAGLRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + + +
Sbjct: 60 FLEKKAA--LPEDAVMHFIGSLQSRKVKDVINEVDYFHALDRMSLAKEINK---RANHTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI N+ F+ + + + GLM + P + + L ++
Sbjct: 115 SCFLQVNVSGEASKHGIHLNEVDKFIDDIKAYENIKIVGLMTMAPFTDDTQYIQELFKKL 174
Query: 181 A---RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDDIQQRQLTYAPCTELSMGMSNDYPVAVEEGATYIRIGTKLVGE 222
>gi|327458763|gb|EGF05111.1| cell division protein YlmE [Streptococcus sanguinis SK1057]
Length = 223
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQMFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|285018925|ref|YP_003376636.1| alanine racemase [Xanthomonas albilineans GPE PC73]
gi|283474143|emb|CBA16644.1| putative alanine racemase protein [Xanthomonas albilineans]
Length = 229
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 76/220 (34%), Positives = 105/220 (47%), Gaps = 11/220 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +E +A A RP L+AVSK + + + GQ F EN +QEA K
Sbjct: 6 LQQIRLDMERAADAAGRPPA--QLLAVSKTQTAAAVAALAAQGQRAFGENYVQEAADKVA 63
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
E ++ IG LQSNK +LFD +++V R K + L+ L V IQV
Sbjct: 64 A-LAEAGLEWHLIGHLQSNKAELAATLFDWVQSVDRPKLIAPLAKGRPSTRGPLNVLIQV 122
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P+Q + I + L + GLM IP P + F + +
Sbjct: 123 NIDDEASKHGCHPDQIEPLAIAIAAQPALALRGLMAIPAPWPEAERREAAFIRMRTLFEH 182
Query: 184 CK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DF AIA+GAT VRIG+ +FG R
Sbjct: 183 LRDAYPRVDTLSMGMSGDFAQAIAAGATLVRIGTALFGAR 222
>gi|328352082|emb|CCA38481.1| UPF0001 protein PM0112 [Pichia pastoris CBS 7435]
Length = 246
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 73/234 (31%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +I + RP V+LV VSK+ S I G F EN +QE
Sbjct: 15 LLENVNHILDQITSVKSPNGRP---VNLVCVSKLKPSSDIMALYDAGFRHFGENYVQELV 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSE---IVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K D++ FIG LQ+NK + + +ET+ K A+ L+
Sbjct: 72 SKAQE--LPKDIKWHFIGGLQTNKCKDLATRIDNLYAVETIDSIKKANKLNSSRDASKPK 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNP-----KP 172
+ V+IQVNT E QKSGI ++ L ++GLM I +
Sbjct: 130 INVFIQVNTSGEEQKSGISSYDDLLALAKVIKNDCPNLTLKGLMTIGSIQQSTAAGERNK 189
Query: 173 HFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L+ + + +LSMGM+ DFE AI G+TSVR+GS IFG RP +
Sbjct: 190 DFDQLTAHNEKLESDLGTTLELSMGMSSDFEQAIRQGSTSVRVGSSIFGARPPR 243
>gi|159026852|emb|CAO89103.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 219
Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++++ + + L+AVSK V S IR A G FAE+KLQE
Sbjct: 1 MTIASRIESIRLTL----------PSCTRLIAVSKQVSSDYIRQAYRAGVRDFAESKLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +++ FD+I ++ K A L +
Sbjct: 51 AISKQQELKDLPDISWHFIGHLQANKARKVLESFDLIHSLDSLKLAQRLDRLASELEINP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QV + K G + + QL ++GLM I P + +
Sbjct: 111 QVLLQVKVVPDPDKFGWDKAELIADLPALVNCQQLKIQGLMTILPQGLSAGEKLAAFEKT 170
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D+ LA+ +GAT +R+G+GIFGER
Sbjct: 171 SDLAQIIENSSSLCLPHLSMGMSNDYPLAVKAGATLIRVGTGIFGERIY 219
>gi|37520271|ref|NP_923648.1| hypothetical protein glr0702 [Gloeobacter violaceus PCC 7421]
gi|35211264|dbj|BAC88643.1| glr0702 [Gloeobacter violaceus PCC 7421]
Length = 232
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +++ + + +V LVAV+K V ++IR A CG F E+++QE
Sbjct: 1 MGVAERIEWLR----------GQLPAAVRLVAVTKQVPVERIREAYDCGLRDFGESRIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K L V IGSLQ NK + +FD I +V A L+ M R
Sbjct: 51 VQQKIPQLTDLQGVSWHLIGSLQRNKARPALEVFDWIHSVDSLPLAERLASLMDSVGRRP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QV + KSG + + + QL++ GL I P + + L ++
Sbjct: 111 RLLLQVKLAADPTKSGWSQAELEAALPRLAALPQLDIRGLTAIAPLGLGEQGNRTLFGQV 170
Query: 181 A---------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + ++ +LSMGM+ D+ AIA+GAT VR+G +FG R
Sbjct: 171 AALARDLGRRAGEAGWQHIRMEELSMGMSGDYPQAIAAGATMVRLGQVLFGSR 223
>gi|188585941|ref|YP_001917486.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350628|gb|ACB84898.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 233
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 14/231 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + LQ K+K+ SA L + D ++L+ ++K +++I G ENK+
Sbjct: 1 MTAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
Q+A K L ++ F+G LQSNKV +++ + + + R A L K +
Sbjct: 61 QDALPKIEELEDL-EINWHFVGHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNV 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ +Q+N + K G+ +T+ F+ ++N++GLM +PP P +P++
Sbjct: 120 NVNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIKGLMTMPPYFSEPEQVRPYY 179
Query: 175 YLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E+ E LSMGM+ D+ +AI GA VR+G +F +R
Sbjct: 180 SRMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQR 230
>gi|91069819|gb|ABE10751.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC1092]
Length = 211
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ K KI +V+++AVSK S++I+ + GQ F E+K+QE
Sbjct: 1 MN-PANYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ + FIG +QSNK+ +IV F I +V + +S ++ +
Sbjct: 50 AFEKQLTLKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEKKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P + + + GLM I P + K + L +
Sbjct: 110 LIMLQVKLSDDPTKGGFNPEFLILKWREIQDLKNITLTGLMTINPKGLSSKENSGLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 170 RALADSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSLIFGSR 210
>gi|328945578|gb|EGG39729.1| cell division protein YlmE [Streptococcus sanguinis SK1087]
Length = 223
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A R KDSV+++AV+K VD + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAHRLKDSVNIIAVTKYVDCETTQELARTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|124023841|ref|YP_001018148.1| hypothetical protein P9303_21481 [Prochlorococcus marinus str. MIT
9303]
gi|123964127|gb|ABM78883.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9303]
Length = 225
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 98/221 (44%), Gaps = 13/221 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ D V L+AVSK + IR GQ F E++LQE
Sbjct: 1 MTLSARWHDLVDRLA----------DGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ FIG LQ+NKV +V F VI +V A ++ ++
Sbjct: 51 ALPKLEDLADLKGLRWHFIGRLQANKVRGVVRSFAVIHSVDSLALAERIARIAAEEQCCP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QV + K G Q K Q L + GLM + P + F
Sbjct: 111 QVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFRQC 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + L SMGM+ D+ A+ +GAT +R+GS +FG R
Sbjct: 171 RELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSILFGAR 211
>gi|21282800|ref|NP_645888.1| hypothetical protein MW1071 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486028|ref|YP_043249.1| hypothetical protein SAS1122 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208170|ref|ZP_06924600.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912248|ref|ZP_07129691.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|21204238|dbj|BAB94936.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244471|emb|CAG42899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296886909|gb|EFH25812.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886494|gb|EFK81696.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|329728876|gb|EGG65297.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21193]
Length = 224
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV +++ D + R A ++ + +
Sbjct: 60 FLQKKEA--LPSDAVIHFIGSLQSRKVKGVINDVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|226479872|emb|CAX73232.1| putative Proline synthetase co-transcribed bacterial homolog
protein [Schistosoma japonicum]
Length = 253
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 19/235 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +IE + ++ + LVAVSK + I A + GQ F ENK+ K
Sbjct: 4 NLHSILNRIEEARKVSTSGQKFCRLVAVSKEKPVQSIIEAYNIGQRHFGENKIVHLYDKS 63
Query: 66 IPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL---LSLEMIKQSRF 119
D++ FIG +Q+NK+ + + ++ + + + SL +
Sbjct: 64 HSPEVVKCCPDIRWHFIGRIQTNKIKRLAGVNNLFMVETLDSISHAEILDSLWALNHQMP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA----MGNPKPHF 174
L + IQVNT E+QK GI P++ DF + + L V GLMCI P P F
Sbjct: 124 LKIMIQVNTSGELQKGGIKPSEVIDFYSQIKAKCSNLEVAGLMCIGQEGVDINSGPNPDF 183
Query: 175 YLLSEIARECK-------LT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + +LSMGM+ DFE AI G+T+VRIG+ IFG+R +
Sbjct: 184 VKLVQCREKLASHLGKSPFDFELSMGMSHDFEHAIQLGSTNVRIGTAIFGQRDSK 238
>gi|118101365|ref|XP_424381.2| PREDICTED: similar to Proline synthetase associated [Gallus gallus]
Length = 276
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAIL--AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ +A P LVAVSK ++ + A S GQ F EN +QE +K
Sbjct: 16 LRAVTEQVQQAAARRPKGLPDMQPRLVAVSKTKPAEMVLDAYSHGQRSFGENYVQELLEK 75
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
R +++ FIG LQ + V++++++ ++ + + S +
Sbjct: 76 ASDSRILSSCPEIKWHFIGHLQKSNVNKLIAVPNLFMLETVDSVKLADRVNSSWQKKGSP 135
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN----PKP 172
+ L V +QVNT E K G+ P T V + L GLM I + P P
Sbjct: 136 QKLKVMVQVNTSGEDSKHGLPPRDTTAAVEHVINKCPSLEFVGLMTIGSIGHDLSKGPNP 195
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F +L E+ + L +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 196 DFQVLLSLRQEVCEKLNLPIEKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGERDYS 252
>gi|254568594|ref|XP_002491407.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia pastoris GS115]
gi|238031204|emb|CAY69127.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia pastoris GS115]
Length = 269
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 73/234 (31%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +I + RP V+LV VSK+ S I G F EN +QE
Sbjct: 38 LLENVNHILDQITSVKSPNGRP---VNLVCVSKLKPSSDIMALYDAGFRHFGENYVQELV 94
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSE---IVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K D++ FIG LQ+NK + + +ET+ K A+ L+
Sbjct: 95 SKAQE--LPKDIKWHFIGGLQTNKCKDLATRIDNLYAVETIDSIKKANKLNSSRDASKPK 152
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNP-----KP 172
+ V+IQVNT E QKSGI ++ L ++GLM I +
Sbjct: 153 INVFIQVNTSGEEQKSGISSYDDLLALAKVIKNDCPNLTLKGLMTIGSIQQSTAAGERNK 212
Query: 173 HFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L+ + + +LSMGM+ DFE AI G+TSVR+GS IFG RP +
Sbjct: 213 DFDQLTAHNEKLESDLGTTLELSMGMSSDFEQAIRQGSTSVRVGSSIFGARPPR 266
>gi|315613573|ref|ZP_07888480.1| YggS family pyridoxal phosphate enzyme [Streptococcus sanguinis
ATCC 49296]
gi|315314264|gb|EFU62309.1| YggS family pyridoxal phosphate enzyme [Streptococcus sanguinis
ATCC 49296]
Length = 223
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQA-LKDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKRT---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + Q+ GLM + P + +
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDDLKEIFKDT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNIPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|297243143|ref|ZP_06927081.1| TIM-barrel fold enzyme [Gardnerella vaginalis AMD]
gi|296889354|gb|EFH28088.1| TIM-barrel fold enzyme [Gardnerella vaginalis AMD]
Length = 266
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 26/242 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + I + R +SV+L+A +K D +I AL G + EN+ QE
Sbjct: 22 IADGVHSVQDAIAQAESHYGRKAESVTLLAATKTRDVGEIMAALRAGVRVIGENRPQEIV 81
Query: 63 KKWI-----------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K + ++ L IG LQSNK+++++ L + I++V + A +S
Sbjct: 82 AKAEILRAQAAREGLSVGVNGEIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKIST 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
V ++VN E KSG P + D + LN+ G M + + + K
Sbjct: 142 RTQNLGLCTDVMLEVNVSGEATKSGCAPERAIDEALAISSLPALNLRGFMTLGARVDDEK 201
Query: 172 PHFYLLSEIAR-------ECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+++ + +LSMGM+ DF AIA G+T VRIGS IFG
Sbjct: 202 IVRSGFAKLREIRDCVSEQLAQDYDGNSAKLELSMGMSGDFAWAIAEGSTMVRIGSAIFG 261
Query: 217 ER 218
R
Sbjct: 262 PR 263
>gi|282862154|ref|ZP_06271217.1| alanine racemase domain protein [Streptomyces sp. ACTE]
gi|282563179|gb|EFB68718.1| alanine racemase domain protein [Streptomyces sp. ACTE]
Length = 239
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAEVEDRIASACASAGRGRDEVTLIVVTKTYPASDVRILRELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V DV+++V R K + LS +++ R L
Sbjct: 68 PKAAACEDLS-LTWHFVGQLQTNKVRSVVGYADVVQSVDRVKLVTALSAAAVRRGRDLGC 126
Query: 123 YIQVN----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+QV +G + G+ P+ + L ++GLM + P G + F
Sbjct: 127 LLQVALDAESGERGGRGGVAPDAIGELAAAVEDAPGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E++ + +S GM+ D E A+A+GAT VR+G+ + G+RP
Sbjct: 187 DRLMELSSRLRGDHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGDRP 236
>gi|119026489|ref|YP_910334.1| hypothetical protein BAD_1471 [Bifidobacterium adolescentis ATCC
15703]
gi|118766073|dbj|BAF40252.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
Length = 272
Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 31/247 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVT 82
Query: 63 KKWIPLRKEW-------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
K L + + IG LQSNK+ +++ + D IE+V
Sbjct: 83 AKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSI 142
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A +S + + + V ++VN E KSG P + ++GLM I
Sbjct: 143 DLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTI 202
Query: 164 PPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIASGATSVRIG 211
+ + S + + L +LSMGMT D ELAIA G+T VR+G
Sbjct: 203 GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVG 262
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 263 TAIFGER 269
>gi|156538527|ref|XP_001607241.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Nasonia vitripennis]
Length = 247
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/246 (27%), Positives = 105/246 (42%), Gaps = 28/246 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ + KI ++ AKR + LVAVSK ++ + A GQ F EN
Sbjct: 3 DIATNLQAIRDKIVAAS--AKRALEYKYFEPQLVAVSKFHPAEAVITAYEAGQKHFGENY 60
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS---- 110
+ E K K D++ FIG LQ + V++++ + ++ + + +
Sbjct: 61 VNELADKANSSDILEKCKDIRWHFIGHLQKSNVNKLLKVANLHIVETVDSEKIATALDSA 120
Query: 111 --LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
L + +QVNT E KSG V + L GLM I
Sbjct: 121 WPKFRKSDDAKLKIMVQVNTSREEAKSGCEVENASSMVKYIFEKCPNLEFTGLMTIGEYG 180
Query: 168 GN----PKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L ++ + L +LSMGM+ D+E AI G++ VR+G+ IF
Sbjct: 181 YDVSKGPNPDFLALKDVKAKVCEDLGLDTKKVELSMGMSTDYEHAIELGSSLVRVGTAIF 240
Query: 216 GERPCQ 221
GERP +
Sbjct: 241 GERPKK 246
>gi|294053951|ref|YP_003547609.1| alanine racemase domain protein [Coraliomargarita akajimensis DSM
45221]
gi|293613284|gb|ADE53439.1| alanine racemase domain protein [Coraliomargarita akajimensis DSM
45221]
Length = 231
Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L + +Q+I ++ A+R DSV L+ V+K + A G EN++QEA
Sbjct: 8 EKRLGLVQQRIVDACRQAERRVDSVHLLPVTKNHPLDAVLYAARSGLAAVGENRVQEALD 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + + IG LQSNK + V FD I++V K L + + +
Sbjct: 68 KKAKMTTTVRWE--LIGHLQSNKAKDAVEQFDRIQSVDSLKLLQRLDRMAAACGKRMSIL 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEI 180
+Q N G + K G P + V + L ++GLM I P NP F L +
Sbjct: 126 LQCNAGEDPNKYGFSPAGLEQAVEVALNCSNLQLDGLMTIAPLTDNPDVAKACFERLRTL 185
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
C L +LSMGMT D + AIA+G+T +R+G+ ++G R
Sbjct: 186 RDHCADTFSVALPELSMGMTGDLDSAIAAGSTQIRVGTALYGSRGY 231
>gi|325282518|ref|YP_004255059.1| hypothetical protein Deipr_0269 [Deinococcus proteolyticus MRP]
gi|324314327|gb|ADY25442.1| protein of unknown function UPF0001 [Deinococcus proteolyticus MRP]
Length = 217
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 14/224 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQ 59
MSL + +I + A R + S LVAV+K ++IR L+ G EN+ Q
Sbjct: 1 MSLPD----VLSRIRTAEARAGRLQGSARLVAVTKGHSLEEIRRKVLAHGNFPLGENRGQ 56
Query: 60 EAKKKWIPLRKE----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E + K + + +IG LQSNKV + + + + ++
Sbjct: 57 EVRDKVAEWTETAQGAPQPEWHYIGPLQSNKVKYLERVALIHAIEDVAQAETVARY---A 113
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPH 173
+ + + + + V+ + L+V GLM + P +
Sbjct: 114 EKWGRAPGVLLQLHNGEAQKHGIAPAELSGVLAGVRATGLDVRGLMVMAPYGQPEEARRI 173
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F + ++ A + L++LSMGM+ DFE A+ G+T VR+GS +FGE
Sbjct: 174 FRVAAQRAHDLGLSELSMGMSGDFEAAVEEGSTLVRVGSALFGE 217
>gi|228902406|ref|ZP_04066560.1| hypothetical protein bthur0014_35820 [Bacillus thuringiensis IBL
4222]
gi|228966854|ref|ZP_04127898.1| hypothetical protein bthur0004_36600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792953|gb|EEM40511.1| hypothetical protein bthur0004_36600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228857150|gb|EEN01656.1| hypothetical protein bthur0014_35820 [Bacillus thuringiensis IBL
4222]
Length = 217
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+ I+ S A R + LVAV+K V +K + G + EN+ + +K+
Sbjct: 3 VNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFG 62
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ + FIGSLQ+ KV EI++ D + ++ R A + + + + +IQV T
Sbjct: 63 SKVN--WHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTS 117
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RE 183
E K G+ + F+ ++ ++ V GLM + P + E+ +E
Sbjct: 118 SEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQE 177
Query: 184 CKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 178 LELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 216
>gi|320449859|ref|YP_004201955.1| pyridoxal phosphate enzyme, YggS family [Thermus scotoductus SA-01]
gi|320150028|gb|ADW21406.1| pyridoxal phosphate enzyme, YggS family [Thermus scotoductus SA-01]
Length = 211
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 8/212 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L + +E + A R V LVAV+K ++IR L G E+++QEA KK
Sbjct: 3 LPEVLEAMEAACRRAGRDPRGVRLVAVTKGRSVEEIREKVLRYGSFPLGESRVQEALKKM 62
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + IG LQ NK +I ++ + A L K+ L V ++
Sbjct: 63 E----LLEAEWHLIGPLQRNKAKFAPRF-ALIHSLDSLRLAEALDRVGEKEGVRLKVLVE 117
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARE 183
VN G E QK G + + + V R+ L V G M +PP +P F LSE+A
Sbjct: 118 VNLGREPQKHGFLEEELPEAVARVREMAHLEVLGFMTVPPMGPEAVVRPIFRRLSELADR 177
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ DF +AI GAT VR+G +F
Sbjct: 178 YGLPERSMGMSDDFPIAIEEGATLVRVGRALF 209
>gi|302546154|ref|ZP_07298496.1| YggS family pyridoxal phosphate enzyme [Streptomyces hygroscopicus
ATCC 53653]
gi|302463772|gb|EFL26865.1| YggS family pyridoxal phosphate enzyme [Streptomyces himastatinicus
ATCC 53653]
Length = 239
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAANLATVEERISAACAAAGRKREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--- 119
K + F+G LQ+NKV + S DV+++V R++ LS + +R
Sbjct: 68 PKAAECADL-PLIWHFVGQLQTNKVRSVCSYADVVQSVDRKRLVDALSGAAVGAARELGV 126
Query: 120 -LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+ V + V++G Q+ G+ P+ L ++GLM + P P+ F
Sbjct: 127 LIQVALDVDSGERGQRGGVGPDGVGALAEAVAAADGLRLDGLMTVAPLAGPYADQPRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 GRLMEISSGLRVAHPAANMVSAGMSSDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|327473400|gb|EGF18820.1| cell division protein YlmE [Streptococcus sanguinis SK408]
Length = 223
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K V + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVGCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLVEDLEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|145595724|ref|YP_001160021.1| alanine racemase domain-containing protein [Salinispora tropica
CNB-440]
gi|145305061|gb|ABP55643.1| alanine racemase domain protein [Salinispora tropica CNB-440]
Length = 248
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R V+++AV+K + + + G EN+ QEA
Sbjct: 16 LAAGLARVRTRIADACAAAGRDPGEVTMIAVTKTYPASDVVALIGLGATEVGENRDQEAA 75
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL- 120
K + + FIG LQ NK +V DV+ +V + A L +
Sbjct: 76 AKAAEVAAAGVTPRWHFIGQLQRNKAKSVVRYADVVHSVDSVRLARALDRAAGAERDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL------NVEGLMCIPPAMGNPKPHF 174
V +QV+ + + G +P L + + GLM + P P F
Sbjct: 136 DVLLQVSIDGAVGRGGALPGSADPDAGLDPLAEVVAGVDGLRLTGLMAVAPLGWEPDRAF 195
Query: 175 YLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+A + + T LS GM+ D E A+ GAT VR+GS + G RP
Sbjct: 196 ARLAEVAAGFRVQHPQATLLSAGMSGDLEPAVRYGATHVRVGSALLGMRPT 246
>gi|327441146|dbj|BAK17511.1| predicted enzyme with a TIM-barrel fold [Solibacillus silvestris
StLB046]
Length = 222
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 107/228 (46%), Gaps = 18/228 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L+ + +IE + + +V ++AV+K VD + A+ G + EN+ +
Sbjct: 1 MTKIIENLKQIQHQIEIAKQRVN-AQQTVEIIAVTKEVDVNRTEEAIEAGLIHLGENRPE 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + V +IGSLQ+ KV +++ D + ++ R A + + ++
Sbjct: 60 GLLNKLDSINSA--VSWHYIGSLQTRKVKQVIDQIDYLHSLDRLSLAEEIEK---RATKR 114
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G+ Q DFV Q ++ V GLM + P + + +
Sbjct: 115 VKCFVQVNVSGEESKHGLTREQALDFVKQLEQFPKIEVVGLMTMAPFTEDETMIRQVFKQ 174
Query: 180 IAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + T+LSMGM+ D+E+A+ GAT VRIG+ + G
Sbjct: 175 LKQLQQEVSQLNIPNVPCTELSMGMSNDYEIAVEEGATFVRIGTALVG 222
>gi|325697070|gb|EGD38957.1| cell division protein YlmE [Streptococcus sanguinis SK160]
Length = 223
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLVEDLEVVLPELEKLENIQIVGLMTMTPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|242242470|ref|ZP_04796915.1| alanine racemase domain protein [Staphylococcus epidermidis W23144]
gi|242234044|gb|EES36356.1| alanine racemase domain protein [Staphylococcus epidermidis W23144]
Length = 222
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + +I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIETEIDASVKKSA-HSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K D++L FIGSLQS KV +I++ D + R A ++ + + +
Sbjct: 60 FKGKKES--LPSDIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINK---RANHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI + F+ ++ + + GLM + P + L E+
Sbjct: 115 KCFLQVNVSGEKSKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKEL 174
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|319401518|gb|EFV89728.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
FRI909]
Length = 222
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + +I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIETEIDASVKKSA-HSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KKK D++L FIGSLQS KV +I++ D + R A ++ + + +
Sbjct: 60 FKKKKES--LPSDIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINK---RANHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI + F+ ++ + + GLM + P + L E+
Sbjct: 115 KCFLQVNVSGEESKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKEL 174
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|301606812|ref|XP_002933001.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Xenopus (Silurana) tropicalis]
Length = 265
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 76/245 (31%), Positives = 113/245 (46%), Gaps = 24/245 (9%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G LQ +++++++A + P LVAVSK + A S GQ F EN
Sbjct: 6 MSEEIGKALQCVRERVQHAAARRLKTLPAIDPRLVAVSKTKPVDMVIDAYSHGQRYFGEN 65
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS----REKTASLL 109
+QE +K D++ FIG LQ ++++V + ++ + +
Sbjct: 66 YVQELAEKASDPNLLASCPDIKWHFIGHLQKTHINKLVGVPNLYILETIDSIKLADKVNS 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPA-- 166
S + S L V +QVNT E K G+ P +T + + + L GLM I
Sbjct: 126 SWQKKGSSEKLKVMVQVNTSSEDSKHGLAPTETTELVKHIREKCSSLEFVGLMTIGSFGY 185
Query: 167 --MGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F +L E+ + L +LSMGM+ DFE AI G+T+VRIGS IFG
Sbjct: 186 DITQGPNPDFQMLLAQREEVCEKLGLQIDSVELSMGMSSDFEHAIEVGSTNVRIGSTIFG 245
Query: 217 ERPCQ 221
ER
Sbjct: 246 ERVYS 250
>gi|57866695|ref|YP_188336.1| hypothetical protein SERP0753 [Staphylococcus epidermidis RP62A]
gi|57637353|gb|AAW54141.1| conserved hypothetical protein TIGR00044 [Staphylococcus
epidermidis RP62A]
Length = 222
Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + +I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIETEIDASVKKSA-HSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K D++L FIGSLQS KV +I++ D + R A ++ + + +
Sbjct: 60 FKEKKES--LPSDIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINK---RANHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI + F+ ++ + + GLM + P + L E+
Sbjct: 115 KCFLQVNVSGEKSKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKEL 174
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|310778064|ref|YP_003966397.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
gi|309747387|gb|ADO82049.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
Length = 226
Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 17/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ N +Q + I + V LVAV+K V ++++ L+ G I EN++Q
Sbjct: 3 SIKNNIQEISEDI----KKYSPCPEKVKLVAVTKYVGTEEMTDVLASGVNIVGENRVQVL 58
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K K + ++ FIG+LQ NKV I ++I +V++ A ++ R
Sbjct: 59 KDKKEKFDQSELGSKIKWHFIGNLQKNKVKYISDYIELIHSVNKLSLAKEINKRAEATDR 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V +++N E K G + + + + V GLM + P + +
Sbjct: 119 IIEVLLEINIAGEESKEGYKIEKLYKELPEILKLKNIKVTGLMTMAPFTEDTDLVRRIFR 178
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + + +L +LSMGM+ D+++A+ GAT +RIGS IF
Sbjct: 179 ELRKLKDDLSRDYFQGELKELSMGMSGDYKIALEEGATLIRIGSKIF 225
>gi|332363496|gb|EGJ41278.1| cell division protein YlmE [Streptococcus sanguinis SK355]
Length = 223
Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLEKYHA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|319787656|ref|YP_004147131.1| alanine racemase domain protein [Pseudoxanthomonas suwonensis 11-1]
gi|317466168|gb|ADV27900.1| alanine racemase domain protein [Pseudoxanthomonas suwonensis 11-1]
Length = 253
Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+LQ +IE +A A RP L+AVSK+ + + + GQ F EN +QE
Sbjct: 28 AARLQDVLARIEAAAKAAGRPC--PRLLAVSKLQPAGAVAALAAAGQRAFGENYVQEGAA 85
Query: 64 KWIPLRKEWDV--QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D + IG LQSNK + F + +V R L+ + L
Sbjct: 86 KRQALDPALDAGLEWHLIGHLQSNKAAVAARTFGWVHSVDRTSVIDALAARRDPAAAPLN 145
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V +QVN E K G P + + + +L + GLM IP P + +P F +
Sbjct: 146 VLLQVNVEGEEGKGGCRPGEVEALAAAVAAQPRLALRGLMAIPVPHPDPEDRRPAFRAMK 205
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + LSMGM+ DF +AIA GAT VRIG+ +FG RP +
Sbjct: 206 QLFDALAARHPGVDTLSMGMSDDFAVAIAEGATLVRIGTALFGPRPPR 253
>gi|307707456|ref|ZP_07643938.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|307616408|gb|EFN95599.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
Length = 223
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q+I++++ A R +SVS+VAV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQIKDASQQAGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQK---RSDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + ++ GLM + P + +
Sbjct: 117 KCFLQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQIPNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|306824768|ref|ZP_07458112.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432979|gb|EFM35951.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 223
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ E
Sbjct: 1 MNLKKNTELVFQQIADASQKANRNLDAVSVIAVTKYVDVQTAEALLPLGIHHIGENRVDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQA-LKDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKRT---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + Q+ GLM + P +
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEAGSDELKEIFKDT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|293400021|ref|ZP_06644167.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306421|gb|EFE47664.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 216
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 15/207 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L+AVSK ++I A + G IF ENK+QE K+K+ P + IG LQ
Sbjct: 14 PKDVVLIAVSKTHTKEEIDEAYASGCRIFGENKVQEIKEKYDP-----NYHWHMIGHLQR 68
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++V L D+I+++ + A + + K + +PV ++VN E K+GI+ +
Sbjct: 69 NKVKDVVPLVDMIQSLDSLRLAEEIEKQCAKIEKVMPVLVEVNIAREANKTGILLEECLS 128
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMT 194
FV C L+V+GLMC+ P G + F + + + + LSMGM+
Sbjct: 129 FVKQCMSFPHLDVQGLMCVGPMNGTTADIEACFEKMQVLYHTLQNEYGAGRIRYLSMGMS 188
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQ 221
+D+ LA+ G+ +R+G+ IFG+R
Sbjct: 189 QDYALALKHGSNMIRLGTIIFGQRNYN 215
>gi|293376230|ref|ZP_06622473.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sanguinis
PC909]
gi|292645122|gb|EFF63189.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sanguinis
PC909]
Length = 216
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 19/224 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +Q I+ +R + V +VA +K V+ ++++ CG I EN++
Sbjct: 1 MNIEKNVEQVQQDIQA----CQRDCEKVRIVAATKYVNVEQMKRLYDCGITIMGENRVDA 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + FIG+LQS KV E+++ DV+ ++ R A + + + L
Sbjct: 57 LLEKKAQLHLPI--EWHFIGTLQSRKVKEVINEIDVLHSLDRLSLAKEIEKY---RDKPL 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
IQVN E K G+ ++ F+ ++ V GLM + P N SE+
Sbjct: 112 KCLIQVNISGEKTKHGLAKDEVVTFIEQLNSFSKIEVIGLMTMAPNTENELTLRRCFSEL 171
Query: 181 ARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +L +LSMGM+ D+ +A+ GAT VR+GS +F
Sbjct: 172 -KQLQLDLEKNYKSCQELSMGMSNDYLIAVEEGATYVRLGSILF 214
>gi|293365889|ref|ZP_06612592.1| cell division protein YlmE [Streptococcus oralis ATCC 35037]
gi|307702293|ref|ZP_07639251.1| alanine racemase, N-terminal domain protein [Streptococcus oralis
ATCC 35037]
gi|331265953|ref|YP_004325583.1| hypothetical protein SOR_0580 [Streptococcus oralis Uo5]
gi|291315567|gb|EFE56017.1| cell division protein YlmE [Streptococcus oralis ATCC 35037]
gi|307624096|gb|EFO03075.1| alanine racemase, N-terminal domain protein [Streptococcus oralis
ATCC 35037]
gi|326682625|emb|CBZ00242.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 223
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQA-LKDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKRT---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + Q+ GLM + P + +
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDELKEIFKDT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|256084107|ref|XP_002578274.1| proline synthetase associated protein [Schistosoma mansoni]
gi|238663640|emb|CAZ34512.1| proline synthetase associated protein, putative [Schistosoma
mansoni]
Length = 237
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 19/233 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++E + + + LVAVSK + I A + GQ F ENK+ K
Sbjct: 4 NLPHILRQVEEACKASPYNQKFCRLVAVSKEKPIQSIIEAYNFGQRHFGENKIVHLYDKS 63
Query: 66 IPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL---LSLEMIKQSRF 119
D++ FIG +QSNK+ ++ + ++ + + S +
Sbjct: 64 YAPELINSCPDIKWHFIGRIQSNKIRKLAGVNNLYMVETVDSMDHAEILNSTWGLNHQIP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA----MGNPKPHF 174
L + IQVNT E QK+GI P + + + L V GLMCI P P F
Sbjct: 124 LNIMIQVNTSGEPQKNGIKPTEVINLYNQIEVKCPNLKVVGLMCIGQEGVDINSGPNPDF 183
Query: 175 YLLSEIARECK-------LT-KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + L +LSMGM+ DFE AI G+T+VRIG+ IFG+R
Sbjct: 184 VKLVQCRELLASSLGKSPLDFELSMGMSHDFEQAIRLGSTNVRIGTAIFGQRD 236
>gi|270292374|ref|ZP_06198585.1| YlmE protein [Streptococcus sp. M143]
gi|270278353|gb|EFA24199.1| YlmE protein [Streptococcus sp. M143]
Length = 223
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q++ ++ A R SVS++AV+K VD K L G EN++ +
Sbjct: 1 MDLKKNTEFVFQQVAEASREANRDPASVSIIAVTKYVDVKTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ KE+ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKY-QTLKEFPVTWHLIGTLQRRKVKEVIPFVDYFHALDSLKLAQEIQKRT---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + Q Q+ GLM + P + +
Sbjct: 117 KCFLQVNISGEESKHGFSKKELLELLPDLAQLDQIEYVGLMTMAPFEADSDELKQIFKKT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QELQAEIREKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|283782601|ref|YP_003373355.1| pyridoxal phosphate enzyme, YggS family [Gardnerella vaginalis
409-05]
gi|298253236|ref|ZP_06977028.1| TIM-barrel fold enzyme [Gardnerella vaginalis 5-1]
gi|283441773|gb|ADB14239.1| pyridoxal phosphate enzyme, YggS family [Gardnerella vaginalis
409-05]
gi|297532631|gb|EFH71517.1| TIM-barrel fold enzyme [Gardnerella vaginalis 5-1]
Length = 266
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 28/243 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + I + R +SV+L+A +K D +I AL G + EN+ QE
Sbjct: 22 IADGVHSVQDAIAQAESHYGRKAESVTLLAATKTRDVGEIMAALKAGVRVIGENRPQEIV 81
Query: 63 KKWI-----------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K + ++ L IG LQSNK+++++ L + I++V + A +S
Sbjct: 82 AKAEILRAEAAREGLSVGVNGEIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISA 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ V ++VN E KSG P + D LN+ G M + + +
Sbjct: 142 RAQNLGLCVDVMLEVNVSGEATKSGCAPERAIDEAFAISSLPALNLHGFMTLGARVDDET 201
Query: 172 PHFYLLSEIAR----------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ KL +LSMGM+ DF AIA G+T VRIGS IF
Sbjct: 202 IVRSGFAKLREIRDCVSKQLVQDYDGSSVKL-ELSMGMSGDFAWAIAEGSTMVRIGSAIF 260
Query: 216 GER 218
G R
Sbjct: 261 GPR 263
>gi|197101691|ref|NP_001126869.1| proline synthase co-transcribed bacterial homolog protein [Pongo
abelii]
gi|75041031|sp|Q5R4Z1|PROSC_PONAB RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|55732977|emb|CAH93175.1| hypothetical protein [Pongo abelii]
Length = 275
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + L R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 76
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA----SLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSLGPEIKWHFIGHLQKQNVNKLMAVPNLFVLETVDSVKLAGKVNSSWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G+ P++T V + L GLM I + P P
Sbjct: 137 ERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LL E+ ++ + +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 197 DFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYS 253
>gi|307297898|ref|ZP_07577702.1| alanine racemase domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915984|gb|EFN46367.1| alanine racemase domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 217
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 23/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +I D V++VA SK + +I L G EN +QEA+
Sbjct: 2 IAENVKRLRSEI----------PDYVTIVAASKTRTASEILEILESGLKDVGENYVQEAE 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + + + IG LQ NKV + +FD+I+TV K A + S+ +PV
Sbjct: 52 GKFEAIGNK--ARWHCIGHLQRNKVKRAIEIFDIIQTVDSFKLAEEIDKRCSYLSKKMPV 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---- 178
++VN+G E K+G++P + + V GLM + P +P+ L
Sbjct: 110 MVEVNSGKEENKAGVLPENVLQLITEISPLKNIAVVGLMTMGPFTEDPEEIRPSLRLTRR 169
Query: 179 ---EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
EI++E ++ LSMGM+ + +AI G+ VR+G+ IFGER
Sbjct: 170 LFEEISKEKIEGVEMKYLSMGMSNSYRVAIEEGSNMVRLGTIIFGER 216
>gi|299472696|emb|CBN79867.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 252
Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats.
Identities = 70/239 (29%), Positives = 105/239 (43%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L+ ++++E + K LVAVSK + ++ A GQ IF EN QE
Sbjct: 18 IADNLEAVRKRVEEVTGEGEAGKPVPRLVAVSKTKPLENLQDAYDAGQRIFGENYAQELI 77
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK-----TASLLSLEMIKQS 117
K + DV FIG LQSNK +V+ + + + ++
Sbjct: 78 DKSPQMPD--DVVWHFIGHLQSNKAKALVAGVPNLAVLETLDTVKLANKLQSACVSSERK 135
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDF----VILCRQKYQLNVEGLMCIPPAMGNPKPH 173
R L VY+Q++T E K+GI + L L ++GLM I
Sbjct: 136 RPLGVYLQIDTSGEDSKAGIYHSDLDACLSLARHLKDNCPALELKGLMTIGAPGDM--EC 193
Query: 174 FYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER--PCQT 222
F L+ E + +LSMGM+ D+E AI G+T+VR+GS IFG R P +T
Sbjct: 194 FDRLNACRDAVAGGLGMEAQALELSMGMSGDYEEAIRRGSTNVRVGSTIFGARFYPNKT 252
>gi|162456467|ref|YP_001618834.1| hypothetical protein sce8184 [Sorangium cellulosum 'So ce 56']
gi|161167049|emb|CAN98354.1| conserved hypothetical protein UPF0001 [Sorangium cellulosum 'So ce
56']
Length = 247
Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 108/224 (48%), Gaps = 7/224 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I ++A A R + V L+AVSK ++ IR A + GQ F EN QE
Sbjct: 23 NVAPRLDEVRHRIASAAARAGRGPEEVRLIAVSKGKPAEAIRAAYAAGQRDFGENYAQEL 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + IG LQ NK + + V+++V RE+ A L +R L
Sbjct: 83 VEKAEALADLDGLVWHAIGQLQRNKAKLVARVAHVVQSVDREELAVELDRRAAALNRTLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLS 178
V I+VN G E K G + + L GLM I P + +P P F L
Sbjct: 143 VLIEVNVGGEASKGGCASGDFAPLLAAIARCAHLRPIGLMTIAPFLEDPNDVAPFFAQLR 202
Query: 179 EIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFE AIA GAT +R+G+ IFG R
Sbjct: 203 ALRDAHGGRAVLPELSMGMSHDFEAAIAEGATWIRVGTAIFGAR 246
>gi|225352554|ref|ZP_03743577.1| hypothetical protein BIFPSEUDO_04178 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156748|gb|EEG70142.1| hypothetical protein BIFPSEUDO_04178 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 274
Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IADGVHRVLDRIASAEQHAGRDAGSVRLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLRKEW---------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K L + IG LQSNK+ +++ + + IE+V
Sbjct: 83 AKAEGLMARCGERGFALGVADDAGASTIAGEHIPFHLIGQLQSNKIGKVLPVVNTIESVD 142
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
A +S + + + V ++VN E KSG P+ L ++GLM
Sbjct: 143 SLDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPSHAIRIAQKIGTLDGLELQGLM 202
Query: 162 CIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + F L + +LSMGMT D ELA+A G+T VR
Sbjct: 203 TIGAHVDDETAIRKGFEHLRKTRDHILESGEPGTQSCRELSMGMTGDMELAVAEGSTIVR 262
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 263 VGTAIFGER 271
>gi|253996004|ref|YP_003048068.1| alanine racemase domain-containing protein [Methylotenera mobilis
JLW8]
gi|253982683|gb|ACT47541.1| alanine racemase domain protein [Methylotenera mobilis JLW8]
Length = 232
Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 104/228 (45%), Gaps = 10/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N+LQ I+++A + + V L+AVSK + IR A + GQ F EN QEA
Sbjct: 3 TISNRLQDILATIQSAAATS-PSQQQVQLLAVSKAQPAAAIREAYAAGQTAFGENYSQEA 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L ++ FIG +QSNK I F + +V R K A L+ L
Sbjct: 62 VEKQKQLTDLA-IEWHFIGPIQSNKTQLIAQHFSWVHSVDRLKIAQRLNEARSSMPLPLQ 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
V IQVN E KSG+ P Q + L + GLM IP +
Sbjct: 121 VCIQVNVSNEDTKSGVPPEQLEALASAISALPHLKLRGLMAIPAPTTETAKQIAQFKQVR 180
Query: 180 ------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + L LS+GM+ D+ AIA GAT VRIGS +FG R
Sbjct: 181 ECYDALIRKGFALNTLSIGMSSDYPAAIAQGATIVRIGSALFGARTPP 228
>gi|325690197|gb|EGD32201.1| cell division protein YlmE [Streptococcus sanguinis SK115]
Length = 223
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A R KDSV+++AV+K VD + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAHRLKDSVNIIAVTKYVDCETTQELARTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++Q+N E K G + + + + + + GLM + P + + +
Sbjct: 117 KCFLQLNISKEESKHGFLVEDLEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|82750795|ref|YP_416536.1| hypothetical protein SAB1052 [Staphylococcus aureus RF122]
gi|82656326|emb|CAI80741.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 224
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FFQKKEA--LPSDAVIHFIGSLQSRKVKDVINYVDYFHALDRLSLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGE 222
>gi|254525563|ref|ZP_05137615.1| pyridoxal phosphate enzyme, YggS family [Prochlorococcus marinus
str. MIT 9202]
gi|221536987|gb|EEE39440.1| pyridoxal phosphate enzyme, YggS family [Prochlorococcus marinus
str. MIT 9202]
Length = 210
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ K KI +V+++AVSK S++I+ + GQ F E+K QE
Sbjct: 1 MN-PANYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ + FIG +QSNK+ +IV F I +V + +S ++ ++
Sbjct: 50 AYEKQLILKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEEKYP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P ++ +++ GLM I P + K + L +
Sbjct: 110 SIMLQVKFSDDPTKGGFNPEFLILKWREIQELKNISLTGLMTINPKGLSSKENSGLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 170 RVLADSLQLPDCSMGMSSDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|148261046|ref|YP_001235173.1| alanine racemase domain-containing protein [Acidiphilium cryptum
JF-5]
gi|146402727|gb|ABQ31254.1| alanine racemase domain protein [Acidiphilium cryptum JF-5]
Length = 229
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 82/218 (37%), Positives = 118/218 (54%), Gaps = 6/218 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I +A R V+L+AVSK I AL+ GQ++F EN++QEA
Sbjct: 13 TIRPALDSIRARIATAAQ--GRA---VTLIAVSKTKPVAAIEAALAAGQLVFGENRVQEA 67
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + L IG LQ+NK E V+LFD I+++ R K A L+ + R
Sbjct: 68 AAKFPLLRAAHPGLALHLIGPLQTNKAREAVALFDCIDSLDRPKLADALAAAAERAGRMP 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+G+ + F+ R ++ + GLM IPP +P PHF L +
Sbjct: 128 RLLVQVNVGDEPQKAGVSLAEADGFIRAMRARFGERLRGLMAIPPLGEDPAPHFRTLVAM 187
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L S+GM+ DFE AIA GAT VR+GS +FG R
Sbjct: 188 ADTHGLPVRSIGMSDDFETAIACGATEVRVGSALFGAR 225
>gi|296140337|ref|YP_003647580.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
gi|296028471|gb|ADG79241.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
Length = 236
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 18/234 (7%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS L L + +++ + A R + V+L+ V+K + I + G F EN
Sbjct: 1 MSRRDELAEGLAATRSRLDAACRAAGRDRTEVALLPVTKFFPASDIALLQELGCTDFGEN 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK- 115
+ QEA K + +L +G +Q NK + ++ ++ + A L
Sbjct: 61 REQEAAAKAA---ELTGARLHMLGHIQRNKAKSVARWAAMVHSLDSIRLAGALERSTEAA 117
Query: 116 -----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
++ L V IQ++ + + G+ V Q L + G+M +PP +P
Sbjct: 118 LEAGVRAAPLDVLIQISLDGDPARGGVTRADLAALVETVAQSPSLRLRGVMGVPPLEADP 177
Query: 171 KPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L+E+ S GM+ D ELA+ G+T VR+G+ I G RP
Sbjct: 178 ERAFTELAELWTDVRRDHPDADVFSAGMSGDLELAVKLGSTCVRVGTAILGRRP 231
>gi|154488149|ref|ZP_02029266.1| hypothetical protein BIFADO_01720 [Bifidobacterium adolescentis
L2-32]
gi|154083622|gb|EDN82667.1| hypothetical protein BIFADO_01720 [Bifidobacterium adolescentis
L2-32]
Length = 272
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 31/247 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A R SV L+A +K D +I VA+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMVAIDAGVRMIGENRPQEVT 82
Query: 63 KK-------------------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
K P + IG LQSNK+ +++ + D IE+V
Sbjct: 83 AKAKGLARRCAERGFSLGVAGVAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSI 142
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A +S + + + V ++VN E KSG P + ++GLM I
Sbjct: 143 DLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTI 202
Query: 164 PPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIASGATSVRIG 211
+ + S + + L +LSMGMT D ELAIA G+T VR+G
Sbjct: 203 GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVG 262
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 263 TAIFGER 269
>gi|156405523|ref|XP_001640781.1| predicted protein [Nematostella vectensis]
gi|156227917|gb|EDO48718.1| predicted protein [Nematostella vectensis]
Length = 297
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 72/244 (29%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
++G L+ QKI A RP++ LVAVSK + I A + GQ F EN
Sbjct: 5 NIGLALKTVLQKINEVAEK--RPENLQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENY 62
Query: 58 LQEAKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS----LLSL 111
+QE K R ++ FIG LQ NK + +V + ++ + + S
Sbjct: 63 VQELVGKSNDPRLRNLVGLRWHFIGHLQRNKCNNLVGVPNLYMVETVDSEKLAATLNNSW 122
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAM--- 167
L V ++VNT E K G +P + + L + GLM I
Sbjct: 123 GKFPNREPLKVMVEVNTSEEKSKKGCLPAEATQLTEFVFNECPHLRLSGLMTIGQYNYDW 182
Query: 168 GNPKPHFYLLS------EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P+ L EI + L +LSMGM+ D+E AI G+T+VR+GS IFG
Sbjct: 183 EKHGPNPDFLRLIRCREEICGKLNLPLERFELSMGMSSDYEKAITMGSTNVRVGSTIFGV 242
Query: 218 RPCQ 221
R +
Sbjct: 243 REPK 246
>gi|241191502|ref|YP_002968896.1| hypothetical protein Balac_1487 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196907|ref|YP_002970462.1| hypothetical protein Balat_1487 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|240249894|gb|ACS46834.1| hypothetical protein Balac_1487 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251461|gb|ACS48400.1| hypothetical protein Balat_1487 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794494|gb|ADG34029.1| hypothetical protein BalV_1441 [Bifidobacterium animalis subsp.
lactis V9]
Length = 281
Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A RP V L+A +K D +I A+ G + EN+ QE
Sbjct: 19 IADGVHRVMDRIAAAEERAGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVV 78
Query: 63 KKWIPLRKEWDVQ--------------------------------LRFIGSLQSNKVSEI 90
K LR + + IG LQSNK+S+I
Sbjct: 79 AKIDGLRYQCKQRGYVIGAYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKI 138
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ + +E+V + A ++ + + R + V ++VN E KSG P+Q +
Sbjct: 139 LPTVNTVESVDSLELAEKIARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIA 198
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKLT------KLSMGMTRDFE 198
+ ++GLM + + + + + + + + +LSMGM+ D E
Sbjct: 199 ALGGVELQGLMTVGAHVRDERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLE 258
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AIA GAT VR+GS IFGER +
Sbjct: 259 YAIAEGATIVRVGSAIFGERDFK 281
>gi|27467781|ref|NP_764418.1| hypothetical protein SE0863 [Staphylococcus epidermidis ATCC 12228]
gi|251810618|ref|ZP_04825091.1| possible enzyme with a TIM-barrel fold [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876381|ref|ZP_06285248.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
SK135]
gi|293366847|ref|ZP_06613523.1| cell division protein YlmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315325|gb|AAO04460.1|AE016746_250 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805778|gb|EES58435.1| possible enzyme with a TIM-barrel fold [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295406|gb|EFA87933.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
SK135]
gi|291319148|gb|EFE59518.1| cell division protein YlmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329729987|gb|EGG66378.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU144]
gi|329734427|gb|EGG70740.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU045]
gi|329736249|gb|EGG72521.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU028]
Length = 222
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +++I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIEKEIDASIKKSA-HSAQPHVIAVTKYVTIERAREAYKVGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K DV+L FIGSLQS KV +I++ D + R A ++ + + +
Sbjct: 60 FKEKKES--LPSDVKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINK---RANHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI + F+ ++ + + GLM + P + L E+
Sbjct: 115 KCFLQVNVSGEESKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIRNLFKEL 174
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|284036036|ref|YP_003385966.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
gi|283815329|gb|ADB37167.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
Length = 219
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 25/229 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +++ + ++ + A L+AV+K + +R A G F ENK+QE
Sbjct: 2 IADTIRLIESELHDKA----------KLIAVTKTKPVELLREAYEAGCRRFGENKVQEMA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K DVQ IG LQ+NKV I +I +V K ++ + K +R +
Sbjct: 52 EKQPQ--LPDDVQWHLIGHLQTNKVKYIAPFVALIHSVDSLKLLQEINKQAAKSNRVIDC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+Q+ E K G+ + + + + GLM + + F L
Sbjct: 110 LLQIYIADEETKFGLSAEEAEALLNAPELDALSHIRIVGLMGLATNTDDTDKVRLEFRGL 169
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + ++LSMGM+ D+ LA+ G+T VR+GS IFG R
Sbjct: 170 KELYDKLGQIKRPMIQFSELSMGMSGDYRLAVEEGSTLVRVGSAIFGSR 218
>gi|322389015|ref|ZP_08062585.1| cell division protein YlmE [Streptococcus parasanguinis ATCC 903]
gi|321144320|gb|EFX39728.1| cell division protein YlmE [Streptococcus parasanguinis ATCC 903]
Length = 222
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E + A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLVENADLVRQQVETARNKANR-QDQVNVIAVTKYVDVATTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ +D+ IGSLQ KV ++++L D + K A + + +
Sbjct: 60 FLEKYQA-LNGYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAQEIQK---RAEHPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G P++ D + Q ++ + GLM + P + + +
Sbjct: 116 KCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSKT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 176 HQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|306829912|ref|ZP_07463099.1| YggS family pyridoxal phosphate enzyme [Streptococcus mitis ATCC
6249]
gi|304427923|gb|EFM31016.1| YggS family pyridoxal phosphate enzyme [Streptococcus mitis ATCC
6249]
Length = 223
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I ++++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASLEANRALDAVSVIAVTKYVDIQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQA-LKDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKRT---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G + + + + Q+ GLM + P + + + E
Sbjct: 117 KCFLQVNISGEKSKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSEKLKEIFKET 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|320011291|gb|ADW06141.1| alanine racemase domain protein [Streptomyces flavogriseus ATCC
33331]
Length = 239
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLAQVEERIASACASAGREREDVTLIVVTKTYPASDVRILYELGVRQVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + V+++V R K + LS ++ R L
Sbjct: 68 PKAAACADLS-LTWHFVGQLQTNKVRSVAGYAGVVQSVDRVKLVTALSAAAVRGGRELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
IQV +G + G+ P+ ++ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGDRGGVAPDAIEELAASVEEAEGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E + + +S GM+ D E AIA+GAT VR+G+ + G RP
Sbjct: 187 DRLVEFSSRLRGNHPAANMVSAGMSADLEDAIAAGATHVRVGTAVLGVRP 236
>gi|323356547|ref|YP_004222943.1| hypothetical protein MTES_0099 [Microbacterium testaceum StLB037]
gi|323272918|dbj|BAJ73063.1| predicted enzyme with a TIM-barrel fold [Microbacterium testaceum
StLB037]
Length = 227
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 98/228 (42%), Gaps = 9/228 (3%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS L ++L +I ++A A R ++ + V+K +R + G EN+
Sbjct: 1 MSTALADRLADVDARIADAARSAGRDLSGITRIVVTKFHPVSLVRELRALGVRDVGENRQ 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K L D+ FIG Q+NK + + DV+ +V R + A L
Sbjct: 61 QELTAKRDELADVVDLHWHFIGQAQTNKARAVRAAADVVHSVDRPRIADALD--AAGSGD 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN + + G+ P + L V G+M + P P F L
Sbjct: 119 PLDVLLQVNLTDDAGRGGVAPRDVEALATHVAGLSTLRVRGVMAVAPLDEEPARAFERLR 178
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A + T +S GMT DF A+A GAT +RIGS I G RP +
Sbjct: 179 GSADAVRTVVPDATWISAGMTGDFPEAVAMGATHLRIGSAITGPRPVR 226
>gi|270013195|gb|EFA09643.1| hypothetical protein TcasGA2_TC011768 [Tribolium castaneum]
Length = 248
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 29/241 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ ++IE +++ LVAV+K + I A GQ F EN +QE
Sbjct: 10 LRKVLERIEQASLK---TPQELRCKPPRLVAVTKTKPVELIVQAYEAGQRHFGENYVQEL 66
Query: 62 KKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS-----LEM 113
++K K +++ FIG LQ+NK++++++ ++ + + +
Sbjct: 67 EEKSHHPLILEKCKEIKWHFIGHLQTNKINKVLATPNLYMVETVHSQKLAANLNKSWPKF 126
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA----MG 168
L V +Q+NT E +KSGI PN+ D + L++EGLM I
Sbjct: 127 GPLDSKLNVMVQINTSAEEEKSGIEPNEVVDLTKFVLNECPNLHLEGLMTIGKFGYDISN 186
Query: 169 NPKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F L + RE L +LSMGM+ +E AI G+T+VR+G+ IFGER
Sbjct: 187 GPNPDFLTLRSCRDRVCRELGLDWKTVELSMGMSDGYEHAIELGSTNVRVGTAIFGERTK 246
Query: 221 Q 221
+
Sbjct: 247 K 247
>gi|91090970|ref|XP_974705.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Tribolium castaneum]
Length = 292
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/241 (29%), Positives = 112/241 (46%), Gaps = 29/241 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ ++IE +++ LVAV+K + I A GQ F EN +QE
Sbjct: 54 LRKVLERIEQASLK---TPQELRCKPPRLVAVTKTKPVELIVQAYEAGQRHFGENYVQEL 110
Query: 62 KKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS-----LEM 113
++K K +++ FIG LQ+NK++++++ ++ + + +
Sbjct: 111 EEKSHHPLILEKCKEIKWHFIGHLQTNKINKVLATPNLYMVETVHSQKLAANLNKSWPKF 170
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA----MG 168
L V +Q+NT E +KSGI PN+ D + L++EGLM I
Sbjct: 171 GPLDSKLNVMVQINTSAEEEKSGIEPNEVVDLTKFVLNECPNLHLEGLMTIGKFGYDISN 230
Query: 169 NPKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F L + RE L +LSMGM+ +E AI G+T+VR+G+ IFGER
Sbjct: 231 GPNPDFLTLRSCRDRVCRELGLDWKTVELSMGMSDGYEHAIELGSTNVRVGTAIFGERTK 290
Query: 221 Q 221
+
Sbjct: 291 K 291
>gi|33862479|ref|NP_894039.1| hypothetical protein PMT0206 [Prochlorococcus marinus str. MIT
9313]
gi|33640592|emb|CAE20381.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 225
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 13/221 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ D V L+AVSK + IR GQ F E++LQE
Sbjct: 1 MTLSARWHDLVDRLA----------DGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ FIG LQ+NKV +V F VI +V A +S +++
Sbjct: 51 ALPKLEALADLKGLRWHFIGRLQANKVRGVVRSFAVIHSVDSLALAERISRIAVEEQCCP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QV + K G Q K Q L + GLM + P + F
Sbjct: 111 QVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFGQC 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + L SMGM+ D+ A+ +GAT +R+GS +FG R
Sbjct: 171 RELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSLLFGAR 211
>gi|289177628|gb|ADC84874.1| proline synthetase-associated protein [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 297
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A RP V L+A +K D +I A+ G + EN+ QE
Sbjct: 35 IADGVHRVMDRIAAAEERAGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVV 94
Query: 63 KKWIPLRKEWDVQ--------------------------------LRFIGSLQSNKVSEI 90
K LR + + IG LQSNK+S+I
Sbjct: 95 AKIDGLRYQCKQRGYVIGAYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKI 154
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ + +E+V + A ++ + + R + V ++VN E KSG P+Q +
Sbjct: 155 LPTVNTVESVDSLELAEKIARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIA 214
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKLT------KLSMGMTRDFE 198
+ ++GLM + + + + + + + + +LSMGM+ D E
Sbjct: 215 ALGGVELQGLMTVGAHVRDERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLE 274
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AIA GAT VR+GS IFGER +
Sbjct: 275 YAIAEGATIVRVGSAIFGERDFK 297
>gi|294791193|ref|ZP_06756350.1| pyridoxal phosphate enzyme, YggS family [Scardovia inopinata F0304]
gi|294457664|gb|EFG26018.1| pyridoxal phosphate enzyme, YggS family [Scardovia inopinata F0304]
Length = 259
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 103/230 (44%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +A A R V L+A +K D +I A++ G + EN+ QE
Sbjct: 27 IAENVHRCLDSLAQAADQAGRRPSDVQLLAATKTRDVGEIMAAVTAGITLIGENRPQEVV 86
Query: 63 KKWIPLRKEWDVQ--LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R E IG LQSNK+++I+ D IE+V A +S + +
Sbjct: 87 LKGGAIRAESTSPLGFHLIGQLQSNKINKILPYVDTIESVDSASLARKISDRALAAGKTA 146
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---L 177
++++VN E KSG P Q L + GLM + P + + + L
Sbjct: 147 RIFLEVNVSGEESKSGCQPQQVGQLADQIASLPALTLAGLMTVGPHVTDESAIRHAYSDL 206
Query: 178 SEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ T LSMGM++D+ LA+A GAT VR+G+ IFG R
Sbjct: 207 RQLRDGLLEQNDPAWASCTDLSMGMSQDYPLAVAEGATIVRLGTAIFGPR 256
>gi|312867083|ref|ZP_07727293.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
parasanguinis F0405]
gi|311097212|gb|EFQ55446.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
parasanguinis F0405]
Length = 222
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E + A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLVENADLVRQQVETARNKANR-QDQVNVIAVTKYVDVTTTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ KE+D+ IGSLQ KV ++++L D + K A + + +
Sbjct: 60 FLEKYQA-LKEYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAQEIQK---RAEHPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G P++ D + Q ++ + GLM + P + + +
Sbjct: 116 KCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSKT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 176 HQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|294628845|ref|ZP_06707405.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. e14]
gi|292832178|gb|EFF90527.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. e14]
Length = 239
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAGNLARVEERIATACAAAGRGREEVTLIVVTKTYPASDVRLLADLGVRQVAENRDQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V D +++V R + + LS E ++ R +
Sbjct: 68 PKAAECADL-PLTWHFVGQLQTNKVRSVVGYADFVQSVDRLRLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGYEIQ----KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV + G+ P + L + GLM + P G + F
Sbjct: 127 LIQVALDAGESARGERGGVAPGGIGELADAIASAEGLRLGGLMTVAPLTGEYAGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTRLRANHPAATMVSAGMSGDLEQAVAAGATHVRVGTSVLGVRP 236
>gi|264680539|ref|YP_003280449.1| hypothetical protein CtCNB1_4407 [Comamonas testosteroni CNB-2]
gi|262211055|gb|ACY35153.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 240
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/236 (33%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L ++ + A RP SV L+AVSK + +R A+ GQ F EN +QEA
Sbjct: 3 TIENNLGQIHARMAAACASASRPVTSVQLLAVSKTFGADAVREAVLAGQRSFGENYIQEA 62
Query: 62 KKKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K LR +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VEKIAALRAMQLAGGEALQWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQVN KSG+M Q + + L + G+M IP P
Sbjct: 123 MARLNVCIQVNVDGGATKSGVMAEQALELAEAMVKLPNLQLRGIMSIPDDAPDFEAQCAV 182
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGMT D E A+A+G+T VR+GSG+FG+R
Sbjct: 183 HKKAKAVFESIKASGLAGLEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGKRSY 238
>gi|126695752|ref|YP_001090638.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9301]
gi|126542795|gb|ABO17037.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9301]
Length = 211
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ K KI +V+++AVSK S++I+ + GQ F E+K+QE
Sbjct: 1 MN-PANYLEIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ + FIG +QSNK+ +IV F I +V + +S ++ +
Sbjct: 50 ALEKQLTLKDHKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEKKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P ++ +++ GLM I P + K + L +
Sbjct: 110 LIMLQVKLSDDPTKGGFNPEFLIMKWREIQELKNISLTGLMTINPKGLSSKENSGLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 170 RALADSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|157412807|ref|YP_001483673.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9215]
gi|157387382|gb|ABV50087.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9215]
Length = 211
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ K KI +V+++AVSK S++I+ + GQ F E+K QE
Sbjct: 1 MN-PANYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ + FIG +QSNK+ +IV F I +V + +S ++ ++
Sbjct: 50 AYEKQLILKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEEKYP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P ++ +++ GLM I P + K + L +
Sbjct: 110 SIMLQVKFSDDPTKGGFNPEFLILKWREIQELENISLTGLMTINPKGLSSKENSGLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 170 RTLADTLQLPDCSMGMSSDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|183602732|ref|ZP_02964095.1| hypothetical protein BIFLAC_00835 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683168|ref|YP_002469551.1| enzyme with a TIM-barrel fold [Bifidobacterium animalis subsp.
lactis AD011]
gi|183217970|gb|EDT88618.1| hypothetical protein BIFLAC_00835 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620818|gb|ACL28975.1| predicted enzyme with a TIM-barrel fold [Bifidobacterium animalis
subsp. lactis AD011]
Length = 285
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A RP V L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IADGVHRVMDRIAAAEERAGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVV 82
Query: 63 KKWIPLRKEWDVQ--------------------------------LRFIGSLQSNKVSEI 90
K LR + + IG LQSNK+S+I
Sbjct: 83 AKIDGLRYQCKQRGYVIGAYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKI 142
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ + +E+V + A ++ + + R + V ++VN E KSG P+Q +
Sbjct: 143 LPTVNTVESVDSLELAEKIARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIA 202
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKLT------KLSMGMTRDFE 198
+ ++GLM + + + + + + + + +LSMGM+ D E
Sbjct: 203 ALGGVELQGLMTVGAHVRDERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLE 262
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AIA GAT VR+GS IFGER +
Sbjct: 263 YAIAEGATIVRVGSAIFGERDFK 285
>gi|86605564|ref|YP_474327.1| hypothetical protein CYA_0860 [Synechococcus sp. JA-3-3Ab]
gi|86554106|gb|ABC99064.1| conserved hypothetical protein TIGR00044 [Synechococcus sp.
JA-3-3Ab]
Length = 224
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 21/224 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++Q + +I + V ++AVSK IR A G F E+++QEA
Sbjct: 5 IHSRIQAIRAQI----------PEHVEIMAVSKGYSVNHIRAAYRAGIRHFGESRVQEAA 54
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D+ IG LQ+NKV + F I++V + A L++ + + +
Sbjct: 55 AKQAQLQDLTDIVWHLIGHLQTNKVKPALRQFAWIDSVDSLRLAKLINQKAWELHLTPKL 114
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
+QV + K G + + Q Q+ + GLM I P + + L ++A
Sbjct: 115 CLQVKLAPDPHKFGWLIPDLLQSLPQLNQLLQVQIVGLMTILPLGLSSEAALELFRKLAE 174
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+L LSMGM+ D+ LA+A+G+ +R+G +F
Sbjct: 175 LADHIQRSGYEHLQLHTLSMGMSDDYPLAVAAGSNLIRLGRALF 218
>gi|330686339|gb|EGG97944.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU121]
Length = 223
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L +I + +++AV+K V ++ + A G F EN+L+ K
Sbjct: 4 VKDNLAQINLEINEHREKSNIS-TQPNVIAVTKYVTIERAKEAYQAGIRHFGENRLEGFK 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D L FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 63 EKKEA--LPKDAVLHFIGSLQSRKVKDVINDVDYFHALDRMSLAKEINK---RAEHTISC 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QVN E K GI ++ F+ +Q + + GLM + P + L ++
Sbjct: 118 FLQVNVSGESSKHGISLDEVNAFIEEIKQFENIKIVGLMTMAPYTDDNAYIQSLFRKLRT 177
Query: 182 -----RECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L +LSMGM+ D+ +AI GAT VRIG+ + GE
Sbjct: 178 KRDEIKKLNLEYAPCEELSMGMSNDYPIAIEEGATFVRIGTKLVGE 223
>gi|321475478|gb|EFX86441.1| hypothetical protein DAPPUDRAFT_313114 [Daphnia pulex]
Length = 316
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 27/243 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ L+ K K+ +++ R +++ +LVAVSK + A GQ F EN
Sbjct: 7 IKENLEFVKAKMMAASLK--RVQEAAAFKAPTLVAVSKTKPVDDVIEAYHGGQRHFGENY 64
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS----REKTASLLS 110
+ E K + + D++ IG LQSNK+ ++ S+ ++ + + A S
Sbjct: 65 IPELGGKSTDPKILEECPDIRWHMIGHLQSNKMKKLASVQNLYMVETIDSVKIADALNKS 124
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + L V +QV T E KSG+ P++ K + + +L GLM I + +
Sbjct: 125 WIKLNKMEKLKVMVQVKTSDEETKSGVEPSEAIKLAKFIIEKCPELEFCGLMTIGASNYD 184
Query: 170 ----PKPHFYLLSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F + E +E +LSMGM+ D+E AI G+T+VR+GS IFG+
Sbjct: 185 VSLGPNPDFLKMIECHKEITCIPDLPKESLELSMGMSSDYEHAIELGSTNVRVGSLIFGQ 244
Query: 218 RPC 220
R
Sbjct: 245 REY 247
>gi|25028604|ref|NP_738658.1| hypothetical protein CE2048 [Corynebacterium efficiens YS-314]
gi|259507662|ref|ZP_05750562.1| pyridoxal-5-phosphate dependent enzyme [Corynebacterium efficiens
YS-314]
gi|23493890|dbj|BAC18858.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164709|gb|EEW49263.1| pyridoxal-5-phosphate dependent enzyme [Corynebacterium efficiens
YS-314]
Length = 234
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L K++I+++ + A RP SVSL+ V+K + IR+ G EN+ QEA+
Sbjct: 7 LQANLDRVKKRIDDATVAAGRPPGSVSLLPVTKFHPVRDIRILHELGITAVGENREQEAR 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIK 115
K ++ IG +Q+ K + + + +V + A L +
Sbjct: 67 AKHQEFPA---MEFHMIGQIQTKKANAVARWAAAVHSVDSVRLAEALDRGVGLALERGDR 123
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
LP +IQ++ + + G+ + + + L + GLMC+PP +P F
Sbjct: 124 SVDKLPCFIQLSLDGDTSRGGVAADTAMEVAQALEEAPHLTLTGLMCVPPLGWDPLTAFS 183
Query: 176 LLSE----IARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E + + + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 184 QAREVLTGMEQHFDRDMEFSAGMSGDLAEAILHGSTIVRVGTEILGSRPIP 234
>gi|289167470|ref|YP_003445739.1| hypothetical protein smi_0622 [Streptococcus mitis B6]
gi|288907037|emb|CBJ21871.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 223
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q+I++++ + R +SVS+VAV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQIKDASQQSGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQK---RSDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + ++ GLM + P + +
Sbjct: 117 KCFLQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQIPNMPMTDLSMGMSRDYKEAIKFGSTFVRIGTAFF 222
>gi|21232187|ref|NP_638104.1| hypothetical protein XCC2756 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767684|ref|YP_242446.1| hypothetical protein XC_1357 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113943|gb|AAM42028.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573016|gb|AAY48426.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 227
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK + + + GQ F EN +QEA K L+ ++ IG LQSNK
Sbjct: 25 RLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATKIAQLQALQ-LEWHLIGHLQSNKAD 83
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
FD ++TV R K +LL+ L V IQVN E K G P
Sbjct: 84 MASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSKHGCAPEAIDVLAAE 143
Query: 149 CRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELA 200
L + GLM IP P + F + + + + LSMGM+ DF A
Sbjct: 144 IATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFATLRSQYPQADTLSMGMSADFADA 203
Query: 201 IASGATSVRIGSGIFGERPCQ 221
IA+GAT VR+G+ +FG+R
Sbjct: 204 IAAGATMVRVGTALFGQRNAP 224
>gi|312196226|ref|YP_004016287.1| alanine racemase [Frankia sp. EuI1c]
gi|311227562|gb|ADP80417.1| alanine racemase domain protein [Frankia sp. EuI1c]
Length = 291
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/265 (24%), Positives = 98/265 (36%), Gaps = 49/265 (18%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
L L +++I +A A R ++LVAVSK + + V G FAEN+ QEA
Sbjct: 23 LRANLGDVRERITAAARAAGRDPAELTLVAVSKTWPAADVVVLRGLGVTHFAENREQEAA 82
Query: 62 ----------------------------------KKKWIPLRKEWDVQLRFIGSLQSNKV 87
++G LQ NK
Sbjct: 83 RKVVEVHARLGLLPAGANGVAAGSGLAADAGRGGDSCHAGTSGTDGTIWHYVGQLQRNKA 142
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ---------KSGIM 138
+ + D ++ V R + + L+ R L V +QV+ + G
Sbjct: 143 NAVARWADWVQCVDRPELVASLARAAATAGRELTVCLQVSLDTSPGGPNGAPTAGRGGAA 202
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGM 193
P L L + G+M + P P+P F L E+A + +S GM
Sbjct: 203 PADVPGLADLVAAAGWLRLAGVMAVAPRGQPPRPAFARLREVAERLRQIHPDACVISAGM 262
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+A GAT +RIG+ +FGER
Sbjct: 263 SGDLEAAVAEGATHLRIGTALFGER 287
>gi|146318137|ref|YP_001197848.1| hypothetical protein [Streptococcus suis 05ZYH33]
gi|146320324|ref|YP_001200034.1| TIM-barrel fold family protein [Streptococcus suis 98HAH33]
gi|253751322|ref|YP_003024463.1| hypothetical protein SSUSC84_0419 [Streptococcus suis SC84]
gi|253753223|ref|YP_003026363.1| hypothetical protein SSU0435 [Streptococcus suis P1/7]
gi|253755046|ref|YP_003028186.1| hypothetical protein SSUBM407_0422 [Streptococcus suis BM407]
gi|145688943|gb|ABP89449.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis
05ZYH33]
gi|145691130|gb|ABP91635.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis
98HAH33]
gi|251815611|emb|CAZ51197.1| conserved hypothetical protein [Streptococcus suis SC84]
gi|251817510|emb|CAZ55254.1| conserved hypothetical protein [Streptococcus suis BM407]
gi|251819468|emb|CAR44987.1| conserved hypothetical protein [Streptococcus suis P1/7]
gi|292557895|gb|ADE30896.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis GZ1]
gi|319757607|gb|ADV69549.1| TIM-barrel fold family protein [Streptococcus suis JS14]
Length = 223
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + +A A RP +SV ++AV+K VDS ++ G EN++ +
Sbjct: 1 MNFQKNKDAIFSAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQLVNTGITHIGENRVDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + IG+LQ KV +I+ D + K A + + ++ +
Sbjct: 61 FLEKYNA-LADKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSVKLAQEIDK---RATKIV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G ++ + + + GLM + P F +
Sbjct: 117 KCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMAPIDATDDELDEIFSKM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI E T+LSMGM+ DFE AIA GAT VRIGS F
Sbjct: 177 QEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIGSAFF 222
>gi|254167228|ref|ZP_04874081.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|197624084|gb|EDY36646.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
Length = 218
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + Q++ V L+A +K ++I A++ G + EN +QE
Sbjct: 1 MNISENVIKIIQEL----------PPGVRLLAATKSRTVEEILEAINAGVDLIGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K+ + + V+ FIG LQ NKV + + +FDVIETV + A + +
Sbjct: 51 ALQKYEKIGNK--VEWHFIGHLQKNKVKKALQIFDVIETVDNVELAKEIDKRAKNMEKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
V I++N+ E QK+G+MP D L + G+M + P + P+
Sbjct: 109 FVMIEINSAREPQKAGVMPEYALDLADEIYSLEHLQLIGVMTMGPVVDEPEEIRSYFRKT 168
Query: 179 -EIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI E ++ LSMGMT + +AI GA VRIG+GIFG R
Sbjct: 169 KEIFDELRYIYGDKQIKYLSMGMTNTWRVAIEEGANIVRIGTGIFGPRKY 218
>gi|325688222|gb|EGD30241.1| cell division protein YlmE [Streptococcus sanguinis SK72]
Length = 223
Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 15/224 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSG 213
++ +E K ++LSMGM+RD+ AIA G+T VRIG+
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTA 220
>gi|323352737|ref|ZP_08087707.1| cell division protein YlmE [Streptococcus sanguinis VMC66]
gi|322121773|gb|EFX93519.1| cell division protein YlmE [Streptococcus sanguinis VMC66]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K +D + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYIDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHA-LKDENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLDNVQIVGLMTMAPFEASHEELNQMFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|126138400|ref|XP_001385723.1| hypothetical protein PICST_48387 [Scheffersomyces stipitis CBS
6054]
gi|126093001|gb|ABN67694.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 250
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 23/238 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +++++ A V LVAVSK+ S I + G F EN +QE
Sbjct: 16 LVANYNTVLEQVQSLAKKHSNVP--VRLVAVSKLKPSGDIMALYNAGVRHFGENYVQELI 73
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
K D++ FIG +QS K ++ + + V +SR
Sbjct: 74 GKSKE--LPKDIKWHFIGGMQSGKAKDLAKGVESLFAVETIDALKKCKQLDNTRSRLDGA 131
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE-----GLMCIPPAMGNP--- 170
+ VY+Q+NT E QKSG + + + GLM I +
Sbjct: 132 PIEVYLQINTSEEDQKSGYSLSNLTELYETIDYILSDECKKLKLGGLMTIGSFAESHTDG 191
Query: 171 --KPHFYLLSEIAR----ECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + + + KL +LSMGM+ DFE AI G+TSVR+G+ IFG RP +
Sbjct: 192 EENEDFSKLVNLKKIVDEKYKLNLQLSMGMSSDFEQAIKQGSTSVRVGTSIFGARPPR 249
>gi|242373474|ref|ZP_04819048.1| alanine racemase domain protein [Staphylococcus epidermidis
M23864:W1]
gi|242348837|gb|EES40439.1| alanine racemase domain protein [Staphylococcus epidermidis
M23864:W1]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I N ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLNKIEEEISNHIEKNSISA-QPHVIAVTKYVTIERAKEAYQAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K D FIGSLQS KV ++++ D + R A ++ + + +
Sbjct: 60 FKEKKAA--LPDDAIFHFIGSLQSRKVKDVINEVDYFHALDRLSLAKEINK---RANHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI ++ +F+ + + + GLM + P + + ++
Sbjct: 115 SCFVQVNVSGEESKHGIALDEVNEFLNELKDYENIKIVGLMTMAPLTDDASYIKSIFHDL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|294626281|ref|ZP_06704884.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666673|ref|ZP_06731910.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599427|gb|EFF43561.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603579|gb|EFF46993.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 248
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A + V L+AVSK + + + GQ F EN +QEA
Sbjct: 21 ASSLQQILDAIHAAAAAR--ARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADA 78
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR D++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 79 KIAQLRAL-DLEWHLIGHLQSNKAELASLCFDWVQTVDRAKLIPLLARHRPDDRAPLNVL 137
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQVN E K G P V + +L + GLM IP P + F + +
Sbjct: 138 IQVNIDDEDSKHGCAPEAIDSLVEAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQAL 197
Query: 181 ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 198 FQQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGAR 240
>gi|299535879|ref|ZP_07049199.1| hypothetical protein BFZC1_07645 [Lysinibacillus fusiformis ZC1]
gi|298728631|gb|EFI69186.1| hypothetical protein BFZC1_07645 [Lysinibacillus fusiformis ZC1]
Length = 255
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L I + R + V ++AV+K V K+ + A+ G + EN+ +
Sbjct: 25 ILTNLNKLNDLITAAEKKGNREGEKVQIIAVTKEVSVKRTQEAIEAGLIHLGENRPEGLH 84
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + +V +IGSLQ+ KV ++++ D + ++ R A + + + +
Sbjct: 85 RKITDIHA--NVHWHYIGSLQTRKVKQVINSIDYLHSLDRLSLAEEIEK---RAEQPVKC 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN E K G+ + FV + ++ V GLM + P N + ++ +
Sbjct: 140 FVQVNVSGEESKHGLTIEEVLPFVEALKGFTKIQVVGLMTMAPNTENEAIIRSVFKQLKQ 199
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 200 CQQQIAEQGFAHAPCTELSMGMSNDFEIAVEEGATFVRVGTALVGN 245
>gi|221214454|ref|ZP_03587425.1| conserved hypothetical protein TIGR00044 [Burkholderia multivorans
CGD1]
gi|221165711|gb|EED98186.1| conserved hypothetical protein TIGR00044 [Burkholderia multivorans
CGD1]
Length = 232
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VRIG+ IFG R
Sbjct: 181 ALRTLFDALRADGLPLDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYS 231
>gi|149742615|ref|XP_001492309.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Equus caballus]
Length = 275
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 22/235 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A S GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L + +Q+NT E K G++P++T V + + L GLM I + P P
Sbjct: 137 ERLKIMVQINTSGEESKHGLLPSETVATVEHIKAKCPSLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F +L + E KL+ +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 197 DFQVLLSLREELCKKLSIPTEQVELSMGMSLDFQHAIEVGSTNVRIGSTIFGERD 251
>gi|294502896|ref|YP_003566958.1| hypothetical protein YPZ3_0786 [Yersinia pestis Z176003]
gi|262360931|gb|ACY57652.1| hypothetical protein YPD4_0743 [Yersinia pestis D106004]
gi|262364871|gb|ACY61428.1| hypothetical protein YPD8_0738 [Yersinia pestis D182038]
gi|294353355|gb|ADE63696.1| hypothetical protein YPZ3_0786 [Yersinia pestis Z176003]
Length = 202
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 8/199 (4%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK I A++ GQ F EN +QE K ++ FIG LQSNK +
Sbjct: 2 LAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFVDNKTLEWHFIGPLQSNKSRLV 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
F TV R K A LS + L V IQ+N E K+GI ++
Sbjct: 62 AENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSIS 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIA 202
L + GLM IP + + + +++ AR ++ LSMGMT D + AI+
Sbjct: 122 TLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAIS 181
Query: 203 SGATSVRIGSGIFGERPCQ 221
+G+T VRIG+ IFG R
Sbjct: 182 AGSTLVRIGTAIFGARVYN 200
>gi|238787371|ref|ZP_04631170.1| alanine racemase [Yersinia frederiksenii ATCC 33641]
gi|238724633|gb|EEQ16274.1| alanine racemase [Yersinia frederiksenii ATCC 33641]
Length = 203
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ---EAKKKWIPLRKEWDVQLRFIGSLQSN 85
+L+AVSK I A++ GQ F EN +Q + + ++ FIG LQSN
Sbjct: 2 TLLAVSKTKPVTAIEEAIAAGQFAFGENYVQEGVDKIHYFADTPHATKLEWHFIGPLQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F TV R K A LS + L V IQVN E KSGI +
Sbjct: 62 KSRLVAENFAWCHTVDRLKIAQRLSAQRPNNMPALNVLIQVNICDEQSKSGIALAELPAL 121
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC--------KLTKLSMGMTRDF 197
Q L++ GLM IP + + + ++ + ++ LSMGMT D
Sbjct: 122 AASISQLPHLHLRGLMAIPAPETDYQRQLAVFEQMNQAFLTLKACYPQMDTLSMGMTDDM 181
Query: 198 ELAIASGATSVRIGSGIFGER 218
AIA+G+T VRIG+ IFG R
Sbjct: 182 AAAIAAGSTLVRIGTAIFGSR 202
>gi|330993134|ref|ZP_08317072.1| UPF0001 protein [Gluconacetobacter sp. SXCC-1]
gi|329759904|gb|EGG76410.1| UPF0001 protein [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 84/193 (43%), Positives = 111/193 (57%), Gaps = 2/193 (1%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
LVAVSK + AL GQ +F EN++QEA K+ LR W D++L IG LQ+NK
Sbjct: 3 LVAVSKFHPQASVIAALEAGQRLFGENRVQEAAAKFPALRTRWPDLRLHIIGGLQTNKAL 62
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E V + D+IE++ R + L+ + R + +QVNTG E QKSG+ + F+
Sbjct: 63 EAVRIADMIESLDRPALSDALARAADRAGRLPGLLVQVNTGDEGQKSGVRLEEADAFINA 122
Query: 149 C-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
+ V GLMCIPP +P PHF L+ +A L +SMGM+ DFE AIA GAT
Sbjct: 123 SLERFGPAVVRGLMCIPPHDRDPTPHFRTLATMAHRHGLDVVSMGMSADFERAIACGATL 182
Query: 208 VRIGSGIFGERPC 220
VR+GS IFG RP
Sbjct: 183 VRVGSAIFGARPA 195
>gi|294942693|ref|XP_002783649.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
gi|239896151|gb|EER15445.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
Length = 246
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 25/236 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKK 64
L+ + ++ A+ R + V L+AVSK + A CGQ F EN +QE +K
Sbjct: 15 NLERIRAEV--VALSKGRD-EEVKLLAVSKTKPMDMLMEAYEKCGQRHFGENYVQELMEK 71
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS---------LLSLEMIK 115
+ K D+Q IG LQ NKV+ ++ + V + +++
Sbjct: 72 AREMPK--DIQWHMIGHLQRNKVAPLLKAVPHLYAVESVDSIKLADKLNAAAATAMDEGL 129
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIP-PAMGNPKP 172
+S L V+I+V T EI K+G+ ++ D + + ++ GLM + P + +
Sbjct: 130 RSEPLNVFIEVMTSDEITKTGVEKDEDIDALAEHIATHCQGLKLFGLMTVANPDLEIARE 189
Query: 173 HFYLLSEIARECKLT-------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+F L+ I + +LSMGMT D +AI G+T VR+GS IFG R +
Sbjct: 190 NFERLAAIRERLEKNLSLTYKLELSMGMTHDMPIAIECGSTEVRVGSAIFGARNYK 245
>gi|223933926|ref|ZP_03625887.1| alanine racemase domain protein [Streptococcus suis 89/1591]
gi|302023462|ref|ZP_07248673.1| hypothetical protein Ssui0_02136 [Streptococcus suis 05HAS68]
gi|330832328|ref|YP_004401153.1| alanine racemase domain-containing protein [Streptococcus suis ST3]
gi|223897403|gb|EEF63803.1| alanine racemase domain protein [Streptococcus suis 89/1591]
gi|329306551|gb|AEB80967.1| alanine racemase domain protein [Streptococcus suis ST3]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + +A A RP +SV ++AV+K VDS ++ G EN++ +
Sbjct: 1 MNFQKNKDAIFSAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQLVNTGITHIGENRVDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + + IG+LQ KV +I+ D + K A + + ++ +
Sbjct: 61 FLEKYNA-LADKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSVKLAQEIDK---RATKIV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G ++ + + + GLM + P + S+I
Sbjct: 117 KCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMAPIDATDDELDEIFSKI 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM+ DFE AIA GAT VRIGS F
Sbjct: 177 QEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIGSAFF 222
>gi|307110697|gb|EFN58933.1| hypothetical protein CHLNCDRAFT_48564 [Chlorella variabilis]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 68/206 (33%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LVAVSK ++ +R A G +F EN +QE D FIG LQSNKV
Sbjct: 17 LVAVSKTKPAEAVREAYEAGHRVFGENYVQELAD--KAPLLPQDCAWHFIGHLQSNKVKA 74
Query: 90 IVSLFDVIETVSREKTASLLSLEMIK----QSRFLPVYIQVNTGYEIQKSGIMPNQT-KD 144
++ + + +A L S L V++QVNT E K G+ P
Sbjct: 75 LLEAVPNLALLETVDSAKLASKLDSTVASLGRPPLAVFVQVNTSGEESKYGVEPQDCLAL 134
Query: 145 FVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIARE----CKLTK----LSMGMTR 195
+ Q L + GLM I P + +F L++ R L + LSMGM+
Sbjct: 135 ARHIHEQCPHLRLAGLMTIGMPDYTSRPENFRCLADCRRAVCAALGLQEGDLELSMGMSG 194
Query: 196 DFELAIASGATSVRIGSGIFGERPCQ 221
DFE AI G+T+VR+GS IFG R
Sbjct: 195 DFEAAIEMGSTNVRVGSTIFGARQYP 220
>gi|260826782|ref|XP_002608344.1| hypothetical protein BRAFLDRAFT_126227 [Branchiostoma floridae]
gi|229293695|gb|EEN64354.1| hypothetical protein BRAFLDRAFT_126227 [Branchiostoma floridae]
Length = 295
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 26/239 (10%)
Query: 7 LQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L+ +++ +A AKRP+ LVAV+K + I A GQ F EN +QE
Sbjct: 16 LRSVLDRVQTAA--AKRPEHLPKVQPRLVAVTKTKPKELILSAYKAGQRHFGENYVQELT 73
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA----SLLSLEMIK 115
K + D++ FIG LQ NKV+++ + ++ + + S E +
Sbjct: 74 DKASDPEIVGQLNDIRWHFIGHLQRNKVNKVTGIPNLYMVETVDSEKLATAINASWEKLG 133
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIP----PAMGNP 170
++ L V IQVNT E QK G P + + + L G+M I P
Sbjct: 134 RTDRLKVMIQVNTSREEQKHGTSPEKVCDLYKHVVENCPHLQAVGIMTIGVYDYDLRNGP 193
Query: 171 KPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F +L E I + L +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 194 NPDFQVLLECRTNICQTFNLQPEDVELSMGMSTDFEHAIEVGSTNIRVGSTIFGARQYP 252
>gi|145340986|ref|XP_001415597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575820|gb|ABO93889.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 237
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ +V LVAVSK ++++ G F EN +QE +K + + D + FIG LQS
Sbjct: 27 QGAVRLVAVSKTKPVEQLKECYDAGHRDFGENYVQEMIEKVPRMPE--DTRWHFIGHLQS 84
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSL----EMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
NK ++ + + +A L + + L V +QVNT E K G+ P
Sbjct: 85 NKCKALLEACPRLAMLETVDSAKLANKLNAAVPEGRVDALRVLVQVNTSGEASKHGVEPG 144
Query: 141 QTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIARE----CKLTK----LS 190
+ +L GLM I P + +F L + E +++ LS
Sbjct: 145 DCVTLAKHIVSECPRLKFAGLMTIGMPDYTSKPENFETLRKCREEVCAALGMSESECELS 204
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGM+ DFE AIA G+T+VR+GS IFG R
Sbjct: 205 MGMSGDFEAAIAMGSTNVRVGSTIFGARDYS 235
>gi|111221636|ref|YP_712430.1| PLP-binding domain-containing protein [Frankia alni ACN14a]
gi|111149168|emb|CAJ60851.1| putative enzyme with PLP-binding domain [Frankia alni ACN14a]
Length = 303
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/268 (25%), Positives = 112/268 (41%), Gaps = 51/268 (19%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V +++I +A A R ++L+AVSK + + + + G FAEN+ QEA
Sbjct: 33 LARRLSVIEERIATAARTAGRDPAGLTLIAVSKTYPAADVVMLHTLGARQFAENREQEAG 92
Query: 63 KK---------------------------------WIPLRKEWDVQLRFIGSLQSNKVSE 89
K P E +V F+G LQ NK
Sbjct: 93 PKVTMVTRELAQVSGDPSAGGGDGLAGAGVAPGAAADPAPGEPNVIWHFVGQLQRNKARS 152
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ-------------KSG 136
++ D +++V R +LS +++ R L + +QV+ + G
Sbjct: 153 VLRWADWVQSVDRSALVGVLSRLAVERGRPLSICLQVSLDSRSDSRGRVGSVVADSGRGG 212
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSM 191
+ P + L + L + G+M + P +P F L +A + T +S
Sbjct: 213 VDPGELPALADLVDEAPGLTLRGVMAVAPRGEPARPAFERLRAVAERLVVDHPQATVISA 272
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERP 219
GM+ D E A+A GAT +RIG+ +FGERP
Sbjct: 273 GMSSDLEAAVAEGATHLRIGTALFGERP 300
>gi|87160902|ref|YP_493779.1| hypothetical protein SAUSA300_1082 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194894|ref|YP_499694.1| hypothetical protein SAOUHSC_01153 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267680|ref|YP_001246623.1| alanine racemase domain-containing protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150393738|ref|YP_001316413.1| alanine racemase domain-containing protein [Staphylococcus aureus
subsp. aureus JH1]
gi|253731807|ref|ZP_04865972.1| hypothetical protein HMPREF0776_2189 [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|294848181|ref|ZP_06788928.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9754]
gi|295407126|ref|ZP_06816927.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8819]
gi|297245988|ref|ZP_06929847.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8796]
gi|87126876|gb|ABD21390.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202452|gb|ABD30262.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740749|gb|ABQ49047.1| alanine racemase domain protein [Staphylococcus aureus subsp.
aureus JH9]
gi|149946190|gb|ABR52126.1| alanine racemase domain protein [Staphylococcus aureus subsp.
aureus JH1]
gi|253724457|gb|EES93186.1| hypothetical protein HMPREF0776_2189 [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|294824981|gb|EFG41403.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9754]
gi|294967979|gb|EFG44007.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8819]
gi|297177152|gb|EFH36406.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8796]
gi|320140997|gb|EFW32844.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143053|gb|EFW34843.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus MRSA177]
Length = 222
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFF 59
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 QKKEA--LPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHKIKC 114
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QVN E K GI F+ ++ ++ + GLM + P + L ++
Sbjct: 115 FLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRL 174
Query: 182 -----RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 KKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 220
>gi|189349455|ref|YP_001945083.1| hypothetical protein BMULJ_00583 [Burkholderia multivorans ATCC
17616]
gi|189333477|dbj|BAG42547.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 232
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 181 ALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|148232210|ref|NP_001091336.1| proline synthetase co-transcribed homolog [Xenopus laevis]
gi|125858539|gb|AAI29542.1| LOC100037173 protein [Xenopus laevis]
Length = 261
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 24/245 (9%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G LQ +++++++A + P LVAVSK + A GQ F EN
Sbjct: 1 MSEEIGKALQSVRERVQHAAARRIKTLPAIDPRLVAVSKTKPVDVVIEAYRHGQRYFGEN 60
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS----REKTASLL 109
+QE +K D++ FIG LQ ++++V + ++ + +
Sbjct: 61 YVQELAEKASDPSLLSSCPDIKWHFIGHLQKTHINKLVGVPNLYILETIDSVKLADKVNS 120
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA-- 166
S + S L V +QVNT E K G+ P +T V R + L GLM I
Sbjct: 121 SWQKKGSSEKLKVMVQVNTSSEDSKYGLAPAETAGLVKHIREKCPSLEFVGLMTIGSFGY 180
Query: 167 ---MGNPKPHFYLLSE---IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
G LL++ + + L +LSMGM+ DFE AI G+T+VRIGS +FG
Sbjct: 181 DLTQGPNPDFQMLLAQRDMVCEKLGLQIDSVELSMGMSSDFEHAIEVGSTNVRIGSTLFG 240
Query: 217 ERPCQ 221
+R
Sbjct: 241 DRVYS 245
>gi|239617209|ref|YP_002940531.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239506040|gb|ACR79527.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 218
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ +I D V++VA +K ++I A+ G I EN +QE
Sbjct: 1 MGIKENIKKILSEI----------PDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+K + + K+ Q IG LQ NKV + V +FD+I+TV K A+ ++ + + +
Sbjct: 51 AQKAFEAVGKK--AQWHMIGHLQKNKVKKAVQIFDMIQTVDSVKIANEINKRAAQFGKVM 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
PV I+VN+G E QK+G++P V + + +EGLM + P + P +P+F L
Sbjct: 109 PVLIEVNSGREEQKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEELRPYFSLT 168
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ LSMGM+ +++AI GA +R+G+ +FG R
Sbjct: 169 RELFENLSREKLPGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPR 217
>gi|84622958|ref|YP_450330.1| hypothetical protein XOO_1301 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577983|ref|YP_001914912.1| hypothetical protein PXO_01992 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366898|dbj|BAE68056.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522435|gb|ACD60380.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 230
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A L R V L+A SK ++ + + GQ F EN +QEA
Sbjct: 3 ASSLQQILDAIHAAATLHART--DVRLLAASKTKPAEAVAALAAQGQRAFGENYVQEADA 60
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR ++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 61 KIAQLRAL-GLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPLNVL 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQVN E K G P + +L + GLM IP P F + +
Sbjct: 120 IQVNIDDEDSKHGCAPEAIDSLAAAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRMQVL 179
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 180 FEQLKTRYRQVDTLSMGMSSDFAEAIAAGATMVRMGTALFGAR 222
>gi|91070350|gb|ABE11267.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88F10]
Length = 211
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ K KI +V+++AVSK S++I + GQ F E+K+QE
Sbjct: 1 MN-PANYLKIKNKI----------PSNVNILAVSKGFKSQEIMTIQNIGQNDFGESKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ + FIG +QSNK+ +IV F I +V + +S ++ +
Sbjct: 50 AFEKQLTLKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEKKKP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ +QV + K G P ++ +++ GLM I P + K + L +
Sbjct: 110 LIMLQVKLRDDPTKGGFNPEFLILKWREIQELKNISLTGLMTINPKGLSSKENLGLFKKC 169
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 170 RALADSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|320101819|ref|YP_004177410.1| alanine racemase domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319749101|gb|ADV60861.1| alanine racemase domain protein [Isosphaera pallida ATCC 43644]
Length = 295
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 92/235 (39%), Gaps = 23/235 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + KI + A RP S LVAV+K ++ + + G F EN Q
Sbjct: 49 LRANVAMVRGKIAEAESRAGRPAGSARLVAVTKYWPAEWLAPLAALGADTFGENHPQAVW 108
Query: 63 K-------KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASL 108
P + + IG LQSNK + + ++I V ++ A+
Sbjct: 109 SKVPALASWRGPDGEILTIHWHLIGHLQSNKARRTLPMVEMIHGVDSLKLLKTLDQLAAN 168
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
+ V +QVN E K G +++ GLM +
Sbjct: 169 VGTATTTSHPLARVCLQVNLSGEASKHGWSAEGLMADAQEIAALRSISIVGLMTMAALGT 228
Query: 169 NPK---PHFYLLSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + P F L E+ L +LSMGM+ D+E A+ +G+T VRIGS +
Sbjct: 229 DTRTARPTFEALRELRDRFAQASGLTLPELSMGMSNDYEAAVEAGSTLVRIGSAL 283
>gi|161525824|ref|YP_001580836.1| alanine racemase domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|160343253|gb|ABX16339.1| alanine racemase domain protein [Burkholderia multivorans ATCC
17616]
Length = 235
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 4 MSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 63
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + +V R K A L+ +
Sbjct: 64 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 124 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 183
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 184 ALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 234
>gi|329117481|ref|ZP_08246198.1| pyridoxal phosphate enzyme, YggS family [Streptococcus parauberis
NCFD 2020]
gi|326907886|gb|EGE54800.1| pyridoxal phosphate enzyme, YggS family [Streptococcus parauberis
NCFD 2020]
Length = 223
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + +AI A R + ++++AV+K VD+ + G AEN++ +
Sbjct: 1 MDLQKNRDQVLKDVGTAAIEAHRNPEDINVIAVTKYVDAGIAGALMETGLTHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K D+ IGSLQ KV +++L D + A + + +
Sbjct: 61 FLDKYES-LKNKDLTWHLIGSLQRRKVKSVINLVDYFHALDSVSLAEEIQK---RAKHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G ++ + Q Q+ + GLM + P + +
Sbjct: 117 KCFLQVNISEEESKHGFTISELPQVIEELAQLNQIQLVGLMTMAPLGASEGTIRDIFKKA 176
Query: 179 ---------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E + T+LSMGM+ D+++AI GAT VRIGS F
Sbjct: 177 NKLRLKLESENRKNMPFTELSMGMSGDYKIAIQEGATFVRIGSSFF 222
>gi|257784296|ref|YP_003179513.1| alanine racemase domain-containing protein [Atopobium parvulum DSM
20469]
gi|257472803|gb|ACV50922.1| alanine racemase domain protein [Atopobium parvulum DSM 20469]
Length = 244
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + ++A + R + +VAVSK V + + A G +F EN+ QE
Sbjct: 12 IKARKAQIESLVADAAKKSGRSASEIEIVAVSKTVPVEAVLAAYKAGYRVFGENRPQELT 71
Query: 63 K---KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ IG+LQ NK++++V I ++S E A +S +
Sbjct: 72 HKLTCLSETSFGSEITFDMIGNLQKNKINQVVGKVRYIHSISSEHLAEAVSKRAEAKGSQ 131
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
V ++VN E KSG P + + + + ++V GLM + P K F L
Sbjct: 132 ESVLLEVNVSAEASKSGFSPEEVSESIQKVVELSHISVVGLMTMAPRDDPERAKRTFAGL 191
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ KL LS GM+ DF AI G+T++R+G +F
Sbjct: 192 RELRDRLSQQVGLKLDVLSCGMSDDFTYAIEEGSTTIRLGRILF 235
>gi|220912344|ref|YP_002487653.1| alanine racemase domain protein [Arthrobacter chlorophenolicus A6]
gi|219859222|gb|ACL39564.1| alanine racemase domain protein [Arthrobacter chlorophenolicus A6]
Length = 245
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I + A R L+ ++K + IR + G EN+ +
Sbjct: 15 LAQRLEAVRERIAKAVASAGRGGQPPRLIVITKFHPADDIRRLAALGVTDVGENR-DQEA 73
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-------LLSLEMIK 115
+ F+G LQ+ K +V + +V R + +
Sbjct: 74 AAKAAELAGAGLAWHFVGQLQTKKAKSVVRYAAAVHSVDRPQLVDALAKAVLNEQAATGR 133
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ + + + + G +P L + G+M + P P+P F
Sbjct: 134 EPLDCFIQVSLEDDAGAHRGGALPADVPALADRIATAEGLRLAGVMAVAPLGAAPEPAFE 193
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+++ T +S GM++D E AI GAT +RIGS I G RP
Sbjct: 194 KLAKVSELLVRDHPAATGISAGMSQDLEAAIKFGATHLRIGSDILGSRPA 243
>gi|34558498|ref|NP_908313.1| hypothetical protein WS2225 [Wolinella succinogenes DSM 1740]
gi|34481792|emb|CAE11213.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 223
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 10/223 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L ++IE + I R V +VAVSK S I+ CGQ F EN++Q+
Sbjct: 1 MNLAQNLDQAIKRIEQARIAYSRH-HIVKIVAVSKYSSSDAIQTLYECGQRAFGENRVQD 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRF 119
+K L + ++ FIG+LQSNK++ ++S ++ ++ + A L + +++
Sbjct: 60 LAQK-SELLGDLPLEWHFIGTLQSNKINALLSLKPALMHSLHSLELAKELHKRLESRNQT 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
LP +Q+N+ E KSG+ P + + + + + Q+ ++G+M I + +
Sbjct: 119 LPALLQINSAKEESKSGVEPQKAVETYHKILEEFPQIKLQGVMTIGAHVEDRAIIQKSFE 178
Query: 179 E---IARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + K LSMGM+ DFELAIA G+ VR+GS +F
Sbjct: 179 TTQVIFEQLKPHGAEILSMGMSGDFELAIACGSNLVRLGSTLF 221
>gi|221202249|ref|ZP_03575283.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2M]
gi|221209162|ref|ZP_03582155.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2]
gi|221170980|gb|EEE03434.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2]
gi|221177823|gb|EEE10236.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2M]
Length = 235
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 4 MSDLAVRLKSVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 63
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + ++ R K A L+ +
Sbjct: 64 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSIDRLKIAQRLAEQRPAHLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 124 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 183
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 184 ALRTLFDALRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 234
>gi|237785348|ref|YP_002906053.1| hypothetical protein ckrop_0752 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758260|gb|ACR17510.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 249
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 19/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L ++I +A A R + L+ V+K + ++ CG + EN+ QEA+
Sbjct: 11 LSSRLDEVSRRIARAAESAGRDPKDIELLPVTKFHPYEDLQALADCGVTVVGENREQEAR 70
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-------- 113
K + + IG +QS K + I + TV R K L M
Sbjct: 71 DKARRLGEDGVGLHIDMIGQVQSKKTNHIARWAHRVHTVDRLKIVHGLDNGMKRALDAGD 130
Query: 114 -----IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
+ LPV+IQ + + + G + L +EGLM +PP
Sbjct: 131 RVSTQHENVDELPVFIQWSADGDPSRGGAKEDDLDSLADAVNSSQYLTLEGLMVVPPRDD 190
Query: 169 NPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F +E++ + LS GM+ D E AIA+G+T VR+G+ I G RP
Sbjct: 191 DSAQVFARAAELSEAIRQKHEGRGGLSAGMSGDLENAIAAGSTVVRVGTAILGSRP 246
>gi|254469009|ref|ZP_05082415.1| conserved hypothetical protein TIGR00044 [beta proteobacterium
KB13]
gi|207087819|gb|EDZ65102.1| conserved hypothetical protein TIGR00044 [beta proteobacterium
KB13]
Length = 223
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 14/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +++I+ R +SL+AVSK +KI + G + F EN +QE
Sbjct: 1 MDIK-NYSRIREEIQIFEENHNRK---ISLIAVSKKQSIEKINYLIDYGHLDFGENYVQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + FIG +QSNK +I F+ + ++ R K + E + +
Sbjct: 57 GVDKI-KTISNPSLIWHFIGPIQSNKTKQITEHFNWVHSIDRLKIYERIKNEANSLRKKI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
IQ+N E KSGI N + + L G+M IP N S
Sbjct: 116 NFLIQINISKENTKSGININDLDEILDGIDPSDDYLRFRGIMAIPSNTSNINLLEKEFSL 175
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D+ LA+ G+T +R+GS IFGER
Sbjct: 176 LNKAYISLKERFHTVDTLSMGMSNDYHLAMDHGSTMIRVGSKIFGER 222
>gi|255729862|ref|XP_002549856.1| hypothetical protein CTRG_04153 [Candida tropicalis MYA-3404]
gi|240132925|gb|EER32482.1| hypothetical protein CTRG_04153 [Candida tropicalis MYA-3404]
Length = 276
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 26/236 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +I++ +V L+AVSK+ S I S G F EN +QE
Sbjct: 41 LISNYNTVLSQIKSL-------NSNVQLIAVSKLKPSSDIMALYSIGVRHFGENYVQELI 93
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL-- 120
K D+ FIG LQS K ++ + +V + + +
Sbjct: 94 SKSQE--LPQDINWHFIGGLQSGKCKDLSKHVKNLYSVETIDSFKKCKQLNNSRDKIDGD 151
Query: 121 --PVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGN-----P 170
VY+Q+NT E QKSG + + I + +L + GLM I +
Sbjct: 152 VINVYLQINTSEEEQKSGFLKIEDIQETIEYLISDECKKLKILGLMTIGSFNESVSSDGE 211
Query: 171 KPHFYLLSEIAR----ECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L EI + + L +L+MGM+ DFE AI G+T+VR+G+ IFG RP +
Sbjct: 212 NKDFKKLVEIKKVLDEKYNLDLQLNMGMSNDFEQAIKQGSTNVRVGTTIFGARPPK 267
>gi|157823503|ref|NP_001100790.1| proline synthase co-transcribed bacterial homolog protein [Rattus
norvegicus]
gi|149057846|gb|EDM09089.1| proline synthetase co-transcribed (predicted) [Rattus norvegicus]
Length = 275
Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 108/237 (45%), Gaps = 22/237 (9%)
Query: 7 LQVFKQKIENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ S R P LVAVSK ++ + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQSVARRPRGLPAIQPRLVAVSKTKPTEMVIEAYGHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS----REKTASLLSLEMIKQS 117
+++ FIG LQ V++++++ ++ + + S +
Sbjct: 77 ASNPTLLSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETIDSVKLADKVNSSWQKKGSP 136
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G++P++T V + L GLM I + P P
Sbjct: 137 ERLKVMVQINTSGEDSKHGLLPSETVAVVEHIKASCPNLEFVGLMTIGSFGHDLSQGPNP 196
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E+ + L +LSMGM+ DF+ AI G+T++R+GS IFGER
Sbjct: 197 DFQRLLSLRQELCEKLGLPVEQVELSMGMSVDFQHAIEVGSTNIRVGSTIFGERDYS 253
>gi|291276586|ref|YP_003516358.1| hypothetical protein HMU03530 [Helicobacter mustelae 12198]
gi|290963780|emb|CBG39615.1| Putative hypothetical protein [Helicobacter mustelae 12198]
Length = 224
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 10/220 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NKL QKIE + I R + + LVAVSK +KI CGQ F ENK+Q+
Sbjct: 4 LKNKLDFVLQKIERARIAYSRHQ-IIKLVAVSKYSGVEKIAELYHCGQRAFGENKVQDL- 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ + + ++ FIG+LQ NK++ ++ S + + Q++ + +
Sbjct: 62 REKQQHLRSFPLEWHFIGNLQRNKINALLESRP-FLIHSVDSLELAKEINKRAQNQVVRI 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ E K+GI P + + L +EGLMC+ + K
Sbjct: 121 LLQVNSAREEGKNGISPEECIEVYDQILSTCKNLKLEGLMCMGAHSIDSKKIEQSFGITK 180
Query: 179 EIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + LSMGM+ D+E+AI+ GA +RIGS IF
Sbjct: 181 DLFDRLQDRGAKILSMGMSGDYEIAISYGANLLRIGSEIF 220
>gi|86609204|ref|YP_477966.1| hypothetical protein CYB_1746 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557746|gb|ABD02703.1| conserved hypothetical protein TIGR00044 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 227
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 21/224 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++Q + +I D V ++AVSK + IR A G F E+++QEA
Sbjct: 8 IHSRIQAIRAQI----------PDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAA 57
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + IG LQ+NKV + F I++V + A L++ + + +
Sbjct: 58 VKQGQLQDLTGIVWHLIGHLQTNKVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKL 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
+QV + K G + + Q Q+ + GLM I P + + L ++A
Sbjct: 118 CLQVKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILPLGLSSEAALDLFRKLAE 177
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ LSMGM+ D+ LA+A+G+ +R+G +F
Sbjct: 178 LADYIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALF 221
>gi|329296971|ref|ZP_08254307.1| alanine racemase domain-containing protein [Plautia stali symbiont]
Length = 235
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R + ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIEHNLQQVRERIAAAAARCGRAPEEITLLAVSKTKPASAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+Q FIG LQSNK + F TV R + A L+ + L
Sbjct: 63 VEKVAELAAHPDLQWHFIGPLQSNKSRLVAENFAWCHTVDRLRIAQRLNDQRPAALPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM +L + GLM IP + + ++A
Sbjct: 123 VLIQVNISDEHSKSGIMLEAVAGLAQQIAALPRLRLRGLMAIPAPEQDYARQLAVCQQMA 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D + AIA+G+T VRIG +FG R
Sbjct: 183 SAFRALQQDYPDVDTLSLGMSDDMDAAIAAGSTMVRIGITVFGARDY 229
>gi|322377422|ref|ZP_08051913.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. M334]
gi|321281622|gb|EFX58631.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. M334]
Length = 223
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q++++++ A R +SVS++AV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQVKDASQQAGREDNSVSVLAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQK---RSDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + ++ GLM + P + +
Sbjct: 117 KCFLQVNISREESKHGFSKEELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQISNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|295696449|ref|YP_003589687.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
gi|295412051|gb|ADG06543.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
Length = 249
Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS G ++ K +I + R V LVAVSK +D+ + + + G EN+LQ
Sbjct: 1 MSTGERIAEVKMRIARACARVGRDPSGVRLVAVSKYIDAARAKEWVQAGLTDLGENRLQV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM---IKQS 117
A++K V FIG LQ+NKV ++ F + ++ R L+ +
Sbjct: 61 AQEKLEA--LGSGVTWHFIGHLQTNKVKAVIQHFAWLHSLDRPSLVDALARRFAEGPPEG 118
Query: 118 RFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
L V QVN E QKSG+ D++ + + + G M + PA+ +P+
Sbjct: 119 PPLKVLAQVNVAGEEQKSGVAREEIGDFLDYIQSKNRFSRWIMAGFMTMAPAVNDPEEVR 178
Query: 175 YLLSEIAR-------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ E+ + L +LSMGM+ DFE+A+ GAT VR+G +
Sbjct: 179 GVFRELRQLRDRFGHHPVWRNRDNL-ELSMGMSGDFEVAVEEGATIVRLGRIL 230
>gi|196015285|ref|XP_002117500.1| hypothetical protein TRIADDRAFT_61518 [Trichoplax adhaerens]
gi|190580029|gb|EDV20116.1| hypothetical protein TRIADDRAFT_61518 [Trichoplax adhaerens]
Length = 254
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 107/234 (45%), Gaps = 22/234 (9%)
Query: 8 QVFKQKIENSAIL--AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ Q+IE + + A+ P LVAVSK I A GQ F EN +QE ++K
Sbjct: 21 ENILQRIEAAKLRRSAELPNIEPRLVAVSKTKPVNLIIDAFESGQTHFGENYVQELERKA 80
Query: 66 IPLR----KEWDVQLRFIGSLQSNKVSEIVSLFD----VIETVSREKTASLLSLEMIKQS 117
+ ++ FIG LQSNK ++ ++ + + + E +
Sbjct: 81 NDEELLKATKGQIKWHFIGHLQSNKCKKLAAIPNLDTVETVDSKKLADCLNKAWESAGKL 140
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP---AMGNPKPH 173
L + +QVNT E KSG P+ V ++ +LN GLM I + P
Sbjct: 141 EQLNIMVQVNTSQEENKSGCPPDDCVTIVDHVLKRCKKLNFVGLMTIGQLGRHDADSNPD 200
Query: 174 FYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F LLSE + +LSMGM++DFE AI G+TSVR+GS IFG RP
Sbjct: 201 FRLLSECRKTVSDKMGIPIDALELSMGMSQDFEHAIEMGSTSVRVGSAIFGSRP 254
>gi|307707040|ref|ZP_07643837.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617566|gb|EFN96736.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 223
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q+I +++ + R +SVS+VAV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQIIDASQQSGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQK---RSDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + ++ GLM + P + +
Sbjct: 117 KCFLQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 179 -----EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQIPNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|121603196|ref|YP_980525.1| alanine racemase domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120592165|gb|ABM35604.1| alanine racemase domain protein [Polaromonas naphthalenivorans CJ2]
Length = 259
Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 23/240 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-- 59
++ + L++ +I + + A R V L+AVSK + + A++ GQ F EN +
Sbjct: 19 TIAHHLRLVHDRINVACLAAGRDPCGVRLLAVSKTFGADAVADAVAAGQQAFGENYIAEG 78
Query: 60 ----------EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
+A++ ++ IG +QSNK + FD +++V R K A L
Sbjct: 79 VEKILALRRWQAEEAARSGVAAAALEWHCIGPIQSNKTRPVAEHFDWVQSVDRLKIAQRL 138
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--- 166
S + L + +QVN KSG+ P + +L + GLM IP
Sbjct: 139 SEQRPPGLAPLQICLQVNIDGGANKSGLAPEDVLALAEEVARLPRLVLRGLMAIPEPAID 198
Query: 167 MGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + LS+GMT D E AI +G+T VR+G+ IFG R
Sbjct: 199 FVAACAIHASAKAIFDHINAAGVLAVPMDTLSLGMTADLEAAIHAGSTMVRVGTAIFGGR 258
>gi|309801688|ref|ZP_07695808.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium dentium
JCVIHMP022]
gi|308221630|gb|EFO77922.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium dentium
JCVIHMP022]
Length = 276
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 19 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVT 78
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L K+ + IG LQSNK+ +++ + +
Sbjct: 79 AKAEGLLKQCAQRGFTLGAATAEVVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVVN 138
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 139 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 198
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIAS 203
++GLM I + + + + + L +LSMGMT D ELAIA
Sbjct: 199 ELQGLMTIGAHVDDETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 258
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 259 GSTIVRVGTAIFGER 273
>gi|306824218|ref|ZP_07457588.1| YggS family pyridoxal phosphate enzyme [Bifidobacterium dentium
ATCC 27679]
gi|304552421|gb|EFM40338.1| YggS family pyridoxal phosphate enzyme [Bifidobacterium dentium
ATCC 27679]
Length = 319
Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 62 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVT 121
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L K+ + IG LQSNK+ +++ + +
Sbjct: 122 AKAEGLLKQCAQRGFTLGAATAEVVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVVN 181
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 182 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 241
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIAS 203
++GLM I + + + + + L +LSMGMT D ELAIA
Sbjct: 242 ELQGLMTIGAHVDDETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 301
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 302 GSTIVRVGTAIFGER 316
>gi|229819925|ref|YP_002881451.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
gi|229565838|gb|ACQ79689.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
Length = 230
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 14/231 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L +++I ++A + R + L+ K +R A+S G + N++Q
Sbjct: 1 MTDVRATLAAARERIADAAGVVGRDPAEIDLLLAVKTQPVAAMRAAISAGGHLLGHNRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E L ++ IG LQSNKV ++ ++TV E A L R
Sbjct: 61 EMAASGPELADL-PHEMHLIGHLQSNKVRAALAWATCVQTVDDEALAVRLDRVAGDLGRS 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V++QVNT E KSG P + L + G M I + +
Sbjct: 120 LDVFVQVNTSGETTKSGTTPEEAHGLARRIGALPSLRLRGFMTIGANSTDVDVVRASYAS 179
Query: 180 IARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR +LSMGM+ D E+A+A+GAT VR+G+ +FG R
Sbjct: 180 LARVRDDVVASGDEGTGLARELSMGMSGDLEIAVAAGATMVRLGTAVFGAR 230
>gi|295398670|ref|ZP_06808694.1| YggS family pyridoxal phosphate enzyme [Aerococcus viridans ATCC
11563]
gi|294973105|gb|EFG48908.1| YggS family pyridoxal phosphate enzyme [Aerococcus viridans ATCC
11563]
Length = 226
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N +Q + I N+ + V+L+ VSK + G FAEN+ +
Sbjct: 1 MTIRNNVQSIEGIIANAQQSSALSSSDVTLICVSKYHSIDEANTVYDAGVRHFAENRPEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + D+ IG+LQ+ KV ++++ D + R K A ++ + + +
Sbjct: 61 FQEKSAAMAD--DIVWHLIGTLQTRKVKDVINEIDYFHALDRIKLAKEINK---RADKVI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K GI P + F+ + ++ + GLM + P +F L
Sbjct: 116 KCFLQVNVSGEESKHGIAPTEIAAFIEAVAEFPKVKIVGLMTMAPIDASEEEIHGYFANL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + + LSMGM+ D+ +A+A GA VR+GS IF
Sbjct: 176 RQLRDQVQAMGKAYAPCQHLSMGMSGDYPIAVAEGADFVRVGSAIF 221
>gi|212715372|ref|ZP_03323500.1| hypothetical protein BIFCAT_00267 [Bifidobacterium catenulatum DSM
16992]
gi|212661678|gb|EEB22253.1| hypothetical protein BIFCAT_00267 [Bifidobacterium catenulatum DSM
16992]
Length = 280
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IADGVHRVLDRIASAEQHAGRDAGSVRLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVT 82
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L + IG LQSNK+ +++ + +
Sbjct: 83 AKAEGLMARCAERGFALGVAGDSGIASASGDSEVACERIPFHLIGQLQSNKIGKVLPVVN 142
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 143 AIESVDSLDLAEKISRRAVARGVTVGVLLEVNESGETSKSGCSPAYAIRIAQKIGTLDGL 202
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIAS 203
++GLM I + + + R +LSMGMT D ELAIA
Sbjct: 203 ELQGLMTIGAHVSDETAIRRGFEHLRRTRDRILASGEPGTQSCRELSMGMTGDMELAIAE 262
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 263 GSTIVRVGTAIFGER 277
>gi|70982173|ref|XP_746615.1| alanine racemase family protein [Aspergillus fumigatus Af293]
gi|66844238|gb|EAL84577.1| alanine racemase family protein, putative [Aspergillus fumigatus
Af293]
gi|159122150|gb|EDP47272.1| alanine racemase family protein, putative [Aspergillus fumigatus
A1163]
Length = 286
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 63/253 (24%), Positives = 97/253 (38%), Gaps = 32/253 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK-DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+L L +I +A+ A RP + L+AVSK+ + I + +
Sbjct: 29 TLLANLSSVTSRISTAALNANRPATKPIRLIAVSKLKPAADILALHNPPTNHLHFGENYL 88
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL------------FDVIETVSREKTASL 108
+ ++ FIG LQSNK + + R
Sbjct: 89 QELLEKSKLLPPSIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDRGWGERS 148
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCI--- 163
+ + L V++QVNT E K+G+ P + + +L ++G+M I
Sbjct: 149 EEVRGVALEDRLRVFVQVNTSGEENKAGVDPVAGAVPLARFIREKCPRLKLQGVMTIGAI 208
Query: 164 ----PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSVR 209
F L E I RE L +LSMGM+ DFE AI G+ VR
Sbjct: 209 ARSKATTPETENEDFVCLRETRDRIVRELGLQGDDAELELSMGMSEDFEGAIKLGSDEVR 268
Query: 210 IGSGIFGERPCQT 222
+G+ IFGERP ++
Sbjct: 269 VGTTIFGERPPKS 281
>gi|23016024|ref|ZP_00055785.1| COG0325: Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magnetotacticum MS-1]
Length = 190
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 94/189 (49%), Positives = 126/189 (66%), Gaps = 1/189 (0%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSE 89
+AVSK ++ + AL+ GQ +F EN++QEAK K+ D++L IG LQ+NKV +
Sbjct: 1 MAVSKTHSAEAVAQALAAGQRVFGENRVQEAKAKFPDLRGGYPDLELHLIGPLQTNKVRD 60
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
++LFDVIETV R K A L+ EM + R + IQVNTG E QK+G+ P+Q V +C
Sbjct: 61 AIALFDVIETVDRPKLARALADEMERTGRRPRILIQVNTGREAQKAGVDPDQLDAMVAIC 120
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVR 209
R +Y+L + GLMCIPPA +P PHF LL+++AR L +SMGM+ DFE AI GAT VR
Sbjct: 121 RNEYKLPLAGLMCIPPAEDDPAPHFRLLADMARRHGLDVISMGMSGDFETAITEGATHVR 180
Query: 210 IGSGIFGER 218
+GS IFG R
Sbjct: 181 VGSAIFGHR 189
>gi|322392780|ref|ZP_08066238.1| cell division protein YlmE [Streptococcus peroris ATCC 700780]
gi|321144358|gb|EFX39761.1| cell division protein YlmE [Streptococcus peroris ATCC 700780]
Length = 223
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L Q++ + R SVS++AV+K VD + G EN++ +
Sbjct: 1 MDLKENTNQVFQQVTKAIQETGRKDGSVSVIAVTKYVDIATAANLIDQGVKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV IGSLQ KV +I+ D + K A + + +R +
Sbjct: 61 FLEKYHA-LSDRDVTWHLIGSLQRRKVKDIIPYVDYFHALDSLKLAQEIQK---RANRKV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G + + Q+ GLM + P + + E
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLTVLQDLSSLDQIEYVGLMTMAPFDAQTEELQKIFKET 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QELQQYIREQELPNMPMTELSMGMSRDFKEAIQCGSTFVRIGTAFF 222
>gi|121608653|ref|YP_996460.1| alanine racemase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121553293|gb|ABM57442.1| alanine racemase domain protein [Verminephrobacter eiseniae EF01-2]
Length = 239
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++ + + A R SV L+AV+K ++ + A++ GQ F EN +QE
Sbjct: 3 TIATNLQQVADRMTRACMAAGRAPASVGLLAVAKTFNADAVAQAVAAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + LR Q IG +QSNK + FD + +V R K A LS +
Sbjct: 63 VDKILALRAALPDAALQWHCIGPVQSNKTRLVAEHFDWVHSVDRLKIAQRLSAQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L + IQVN KSG+ Q + Q +L + GLM IP P K
Sbjct: 123 PLQLCIQVNLDGGATKSGVTAGQLPGLLRAIAQLPRLRLRGLMSIPDPAPDFQAQKAIHA 182
Query: 176 LLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + LS+GMT D E AI +G+T VR+GSGIFG+RP
Sbjct: 183 SVKRLFDQICASAVPGLEDFDTLSLGMTADLEAAIWAGSTLVRVGSGIFGDRP 235
>gi|326389984|ref|ZP_08211547.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|325994044|gb|EGD52473.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
200]
Length = 202
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 12/201 (5%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ + +V+ FIG LQ+NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYP--YLKNEVEFHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + ++S + +++N G E K GI P + +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEENKYGIPPEEMHNFVKEME 118
Query: 151 QKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELA 200
+ + + GLM I P +P+F + E+ E K + LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGERPCQ 221
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQRQYN 199
>gi|118377078|ref|XP_001021721.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|89303487|gb|EAS01475.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 262
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ K+ ++ + + ++V SK + ++ A G F EN + E
Sbjct: 5 IAKSLKQVIDKVNSAIKNSTKTSR-CTIVGASKTKPLELLQQAYDAGLRHFGENYVDEIV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI-VSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ D++ +IG LQ+NK+ ++ V ++ET+ K A+ ++ E K S+ L
Sbjct: 64 T--KAPKLPQDIKWHYIGHLQTNKIKQVLVPNLYMLETIDSIKLATKVNKECQKLSKKLK 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQV T E + S +F++ + + + + L EI
Sbjct: 122 VLIQVKTSTEDRVSTEDAPALVEFIMTQCPNLEFSGLMTIGYEGDENAFIQLYDLKIEIC 181
Query: 182 RECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ KL +LSMGM++DFE AI G+T+VRIG+ IFG R
Sbjct: 182 EKFKLNKDEIELSMGMSQDFEKAILYGSTNVRIGTTIFGAREYP 225
>gi|21243652|ref|NP_643234.1| hypothetical protein XAC2925 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109229|gb|AAM37770.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 230
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 71/200 (35%), Positives = 95/200 (47%), Gaps = 9/200 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + + GQ F EN +QEA K LR D++ IG LQSNK
Sbjct: 24 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRAL-DLEWHLIGHLQSNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
FD ++TV R K LL+ L V IQVN E K G P+
Sbjct: 83 AELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPDAIDSLA 142
Query: 147 ILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFE 198
+ +L + GLM IP P + F + + R+ + LSMGM+ DF
Sbjct: 143 EAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQALFRQLQARHRQVDTLSMGMSSDFA 202
Query: 199 LAIASGATSVRIGSGIFGER 218
AIA+GAT VR+G+ +FG R
Sbjct: 203 EAIAAGATMVRVGTALFGAR 222
>gi|332667877|ref|YP_004450665.1| hypothetical protein Halhy_5969 [Haliscomenobacter hydrossis DSM
1100]
gi|332336691|gb|AEE53792.1| protein of unknown function UPF0001 [Haliscomenobacter hydrossis
DSM 1100]
Length = 252
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 22/230 (9%)
Query: 7 LQVFKQKI--ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ + I + + LVAVSK + I GQ IF ENK+QE K
Sbjct: 25 LENIQLNIMYKELIQQLG----TARLVAVSKTQPHEAIMQLYEQGQRIFGENKVQELVPK 80
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ D++ IG LQSNKV I +I +V K + + + + R + +
Sbjct: 81 YEA--LPKDIEWHLIGHLQSNKVKFIAPFVAMIHSVDSLKLLAEIDKQAAQHQRTIDCLL 138
Query: 125 QVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Q E K G+ N+ + + G+M + + + + +
Sbjct: 139 QFKINDEETKFGLDINEAYALLESATYPNLQHIRICGVMGMASFVEDKAQIQREFKALKQ 198
Query: 183 ------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E ++SMGM+ D+ +A+A G+T VRIG+ +FG R
Sbjct: 199 IFDTLKARYFPNEASFKEISMGMSDDYSIAVAEGSTLVRIGTLLFGARNY 248
>gi|71652235|ref|XP_814779.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879780|gb|EAN92928.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 252
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 74/238 (31%), Positives = 107/238 (44%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +++ ++ RP V+LVAVSK ++ CG F EN +QE
Sbjct: 15 IAENYKNVLGRMDAASG--GRP---VTLVAVSKTKSPACVQALYDCGHRCFGENYVQELV 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQS 117
+ D+Q FIG LQSNKV E++ D + V + +
Sbjct: 70 E--KAGVLPKDIQWHFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRGG 127
Query: 118 RFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKPH 173
R L VYIQVNT E KSG P + + LNV G+M +P P+
Sbjct: 128 RSLNVYIQVNTSGEESKSGTEPGNQTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPENF 187
Query: 174 FYLLS---EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER--PCQT 222
LL +AR + LSMGMT DFE A+ G+T VR+G+ +FG+R P ++
Sbjct: 188 ECLLQVREAVARALSVPADSLALSMGMTGDFENAVKMGSTIVRVGTALFGKRYCPPKS 245
>gi|78048625|ref|YP_364800.1| hypothetical protein XCV3069 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925537|ref|ZP_08186925.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas perforans
91-118]
gi|78037055|emb|CAJ24794.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544041|gb|EGD15436.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas perforans
91-118]
Length = 230
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + + GQ F EN +QEA K LR ++ IG LQSNK
Sbjct: 24 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRAL-GLEWHLIGHLQSNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 83 AELASQCFDWVQTVDRAKLIPLLARHRPADRAPLNVLIQVNIDDEDSKHGCAPEAIDSLA 142
Query: 147 ILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFE 198
+ +L + GLM IP P + F + + + + LSMGM+ DF
Sbjct: 143 EAIALQPRLQLRGLMAIPAPFPDQARRQAAFMRMQALFEQLQARHRQVDTLSMGMSSDFA 202
Query: 199 LAIASGATSVRIGSGIFGERP 219
AIA+GAT VR+G+ +FG R
Sbjct: 203 EAIAAGATMVRVGTALFGARD 223
>gi|213691153|ref|YP_002321739.1| alanine racemase domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522614|gb|ACJ51361.1| alanine racemase domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457211|dbj|BAJ67832.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 278
Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats.
Identities = 66/253 (26%), Positives = 102/253 (40%), Gaps = 37/253 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 23 IADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVGEILAAIDAGVRCIGENRPQEVT 82
Query: 63 KKWIPLRKE-------------------------WDVQLRFIGSLQSNKVSEIVSLFDVI 97
K L K V IG LQ+NK+ +++ D I
Sbjct: 83 VKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVPFHLIGQLQANKIGKVLPAVDTI 142
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
E+V + A ++ + + V ++VN E KSG P+ D L +
Sbjct: 143 ESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRL 202
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGA 205
+GLM I + + + + + R T+LSMGMT D AI G+
Sbjct: 203 QGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGS 262
Query: 206 TSVRIGSGIFGER 218
T VR+G+ IFGER
Sbjct: 263 TIVRVGTAIFGER 275
>gi|322827132|gb|EFZ31435.1| hypothetical protein TCSYLVIO_2251 [Trypanosoma cruzi]
Length = 252
Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 107/238 (44%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +++ ++ RP V+LVAVSK ++ CG F EN +QE
Sbjct: 15 IAENYKNVLGRMDAASG--GRP---VTLVAVSKTKSPACVQALYDCGHRCFGENYVQELV 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQS 117
+ D+Q FIG LQSNKV E++ D + V + +
Sbjct: 70 E--KAGVLPKDIQWHFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRGG 127
Query: 118 RFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKPH 173
R L VYIQVNT E KSG P + + LNV G+M +P P+
Sbjct: 128 RSLNVYIQVNTSGEESKSGTEPGNQTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPENF 187
Query: 174 FYLLS---EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER--PCQT 222
LL +AR + LSMGMT DFE AI G+T VR+G+ +FG+R P ++
Sbjct: 188 ECLLQVREAVARALSVPADSLALSMGMTGDFENAIKMGSTVVRVGTALFGKRYCPPKS 245
>gi|312864654|ref|ZP_07724885.1| pyridoxal phosphate enzyme, YggS family [Streptococcus downei
F0415]
gi|311099781|gb|EFQ57994.1| pyridoxal phosphate enzyme, YggS family [Streptococcus downei
F0415]
Length = 225
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +++ +A A R +S+VAV+K VDS + G EN++ +
Sbjct: 2 MDLRKNKDFVYEQVAQAASQAGRQVSDISIVAVTKYVDSHIAEQLVDLGVKHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV IGSLQ KV +I++ D + K A+ + + +
Sbjct: 62 FLDKYQA-LKGKDVTWHLIGSLQRRKVKDIINYVDYFHALDSVKLAAEIQK---RADHTI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G P Q + + +L + GLM + P + + + +
Sbjct: 118 KCFLQVNVSGEESKHGFAPEQVNEALEELASFDKLEIVGLMTMAPIDADEQELDEIFRQT 177
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +E K LSMGM+RDF +AI++G+T VRIG+ F
Sbjct: 178 NALRQELKERKIKNMPFDDLSMGMSRDFPIAISNGSTFVRIGTSFF 223
>gi|237654358|ref|YP_002890672.1| alanine racemase [Thauera sp. MZ1T]
gi|237625605|gb|ACR02295.1| alanine racemase domain protein [Thauera sp. MZ1T]
Length = 237
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 75/211 (35%), Positives = 102/211 (48%), Gaps = 13/211 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
V L+AVSK ++ +R A + GQ F EN +QE K + ++ FIG LQ
Sbjct: 25 DPADVKLLAVSKTWPAEAVREAAAAGQRAFGENYVQEGVDKVEA-LRALGLEWHFIGPLQ 83
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + + FD + + R K A LS + L V IQVN E KSG+ P++
Sbjct: 84 SNKTRPVANAFDWVHGIDRLKIAERLSAQRDVHLPPLDVCIQVNVSGEDSKSGVAPDEAG 143
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTR 195
+L + GLMCIP + + F +L + E + L LSMGM+
Sbjct: 144 ALAHAVAALPRLRLRGLMCIPEPSADEAVLRARFAVLRGLHDELRAAGLALDTLSMGMSH 203
Query: 196 DFELAIASGATSVRIGSGIFGER----PCQT 222
D E AIA GA VR+G+ IFGER P T
Sbjct: 204 DLEPAIAEGANIVRVGTAIFGERARTAPTPT 234
>gi|308161351|gb|EFO63803.1| PLP dependent protein [Giardia lamblia P15]
Length = 220
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/218 (33%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRK 70
I + K LVAVSK + I A + GQ +F EN +QE KK
Sbjct: 2 SNIAGALRDIKAGLGHAKLVAVSKTKPVEAILEAYAAGQRLFGENYVQELVKKTRAVQNV 61
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D++ FIG LQ+NK +I S+ + + +TV +K A LS L V IQ+NT
Sbjct: 62 ANDIEWHFIGHLQTNKARDIASIPNCVVQTVDSDKLARRLSDLRPGDLDPLRVMIQINTS 121
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKL 186
E+ KSG + + + +L + GLM I + L+ I + KL
Sbjct: 122 GELTKSGCTVDGAIELAQVIGVLPRLRLIGLMTIGAPNSSADSFQALIDARNVIEKAIKL 181
Query: 187 TK---LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D++LA+ GA VR+GS IFGER
Sbjct: 182 EEKLELSMGMSSDYQLAVRMGADYVRVGSAIFGERTYP 219
>gi|327314522|ref|YP_004329959.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola
F0289]
gi|326944751|gb|AEA20636.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola
F0289]
Length = 223
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ D V LVA+SK + I A GQ +F E++ QE
Sbjct: 3 DVAKNLRKVL----------GSLPDGVRLVAISKFHPVEYIEAAYHEGQRVFGESQEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV I +IE V K ++ + + R +
Sbjct: 53 ARKVES--LPKDIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARYGRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G P ++ ++ +++ GLM + + + +
Sbjct: 111 VLLELHIAEEESKYGFTPAACRELLENGEWKELRNVHISGLMMMASNVDDRSQIRGEMTL 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ E K + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKARFFADDPAFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPRVY 223
>gi|171742035|ref|ZP_02917842.1| hypothetical protein BIFDEN_01139 [Bifidobacterium dentium ATCC
27678]
gi|171277649|gb|EDT45310.1| hypothetical protein BIFDEN_01139 [Bifidobacterium dentium ATCC
27678]
Length = 319
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 62 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVM 121
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L K+ + IG LQSNK+ +++ + +
Sbjct: 122 AKAEGLLKQCAQRGFTLGAATAEAVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVIN 181
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 182 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 241
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIAS 203
++GLM I + N + + + L +LSMGMT D ELAIA
Sbjct: 242 ELQGLMTIGAHVDNETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 301
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 302 GSTIVRVGTAIFGER 316
>gi|325270978|ref|ZP_08137565.1| proline synthetase associated protein [Prevotella multiformis DSM
16608]
gi|324986775|gb|EGC18771.1| proline synthetase associated protein [Prevotella multiformis DSM
16608]
Length = 223
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L D V LVA+SK ++ I A GQ +F E++ QE
Sbjct: 3 DVAKNLHEVL----------GTLPDGVKLVAISKFHPAEYIEAAYREGQRLFGESQEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV I +IE V K ++ + + R +
Sbjct: 53 ARKVE--CLPKDIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARHGRVIR 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G P ++ R +++ GLM + + + +
Sbjct: 111 VLLELHIAEEESKYGFSPAACRELLENGEWRALRNVHISGLMMMASNVEDRSQIRREMTL 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ E K + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKAKYFADDPEFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPRVY 223
>gi|256788301|ref|ZP_05526732.1| hypothetical protein SlivT_27764 [Streptomyces lividans TK24]
gi|289772195|ref|ZP_06531573.1| YggS family pyridoxal phosphate enzyme [Streptomyces lividans TK24]
gi|289702394|gb|EFD69823.1| YggS family pyridoxal phosphate enzyme [Streptomyces lividans TK24]
Length = 239
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++ A RP+ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEQRITDACAAAGRPRQDVTLIVVTKTYPADDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V DV+++V R + + LS E ++ R +
Sbjct: 68 PKAAACSDL-PLSWHFVGQLQTNKVRSVVGYADVVQSVDRARLVTALSKEAVRAGREVGC 126
Query: 123 YIQVN----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
+QV G ++ G+ P ++ L L ++GLM + P G + F
Sbjct: 127 LLQVALDAEEGGRGERGGVPPAGIEELADLVAGSEGLRLDGLMTVAPLSGEYSGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 EHLMDLSTRVRRTHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|212275792|ref|NP_001130828.1| hypothetical protein LOC100191932 [Zea mays]
gi|194690222|gb|ACF79195.1| unknown [Zea mays]
Length = 243
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV +VAVSK IR G F EN +QE + D++ FIG+LQS
Sbjct: 32 PGSVRVVAVSKTKPVPVIRGVYDAGHRCFGENYVQELID--KAPQLPEDIEWHFIGNLQS 89
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPVYIQVNTGYEIQKSGIMPN 140
NK +++ ++ V + + + L V +QVNT E K G+ P+
Sbjct: 90 NKARALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPS 149
Query: 141 -QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-----SEIARECKLTK----LS 190
+ + L GLM I + P + E+ +E + + LS
Sbjct: 150 GCMELAKHVKLNCPNLVFSGLMTIGMLDYSSTPENFKALANCREEVCKELGIPEEQCELS 209
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 210 MGMSADFEQAIEMGSTNVRVGSTIFGAREYP 240
>gi|307266460|ref|ZP_07547995.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306918501|gb|EFN48740.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 202
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 12/201 (5%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ + +V+ FIG LQ+NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYP--YLKNEVEFHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + ++S + +++N G E K GI P + +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKSLVIDCLVEINIGGEESKYGIPPEEMHNFVKEME 118
Query: 151 QKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELA 200
+ + + GLM I P +P+F + E+ E K + LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGERPCQ 221
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQRQYN 199
>gi|296876956|ref|ZP_06901000.1| YggS family pyridoxal phosphate enzyme [Streptococcus parasanguinis
ATCC 15912]
gi|296431991|gb|EFH17794.1| YggS family pyridoxal phosphate enzyme [Streptococcus parasanguinis
ATCC 15912]
Length = 222
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLIENADLVRQQVETVRNKANR-QDQVNVIAVTKYVDVATTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ KE+++ IGSLQ KV ++++ D + K A + + +
Sbjct: 60 FLEKYQA-LKEYELTWHLIGSLQRRKVKDVINFVDYFHALDSVKLAQEIQK---RAEHPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G P++ D + Q ++ + GLM + P + + +
Sbjct: 116 KCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSKT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 176 HQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|228475001|ref|ZP_04059729.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
SK119]
gi|228270986|gb|EEK12374.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
SK119]
Length = 224
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ + +I + + +++AV+K V + + A G F EN+++
Sbjct: 1 MKVTENLEKIQAEINHHLEKSVIKTA-PNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV + FIGSLQS KV +++ D + + R A ++ + + +
Sbjct: 60 FLEKKQA--LPKDVTMHFIGSLQSRKVKYVINDIDYLHALDRLSLAKEINK---RATHTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN E K GI ++ DF+ + + + GLM + P + L ++
Sbjct: 115 SCFIQVNVSGEETKHGIALSEVNDFIEQIKAFDNIKIVGLMTMAPYTDDKDYIHQLFKQL 174
Query: 181 A------RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ KL LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDEIKNLKLNYAPCEYLSMGMSNDYTIAVEEGATFIRIGTKLVGE 222
>gi|21220560|ref|NP_626339.1| hypothetical protein SCO2080 [Streptomyces coelicolor A3(2)]
gi|5689952|emb|CAB51989.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 239
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++ A RP+ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEQRITDACAAAGRPRQDVTLIVVTKTYPADDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V DV+++V R + + LS E ++ R +
Sbjct: 68 PKAAACSDL-PLSWHFVGQLQTNKVRSVVGYADVVQSVDRARLVTALSKEAVRAGREVGC 126
Query: 123 YIQVN----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
+QV G ++ G+ P ++ L L ++GLM + P G + F
Sbjct: 127 LLQVALDAEEGGRGERGGVPPAGIEELADLVAGSEGLRLDGLMTVAPLSGEYAGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 EHLMDLSTRVRRTHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|314936650|ref|ZP_07843997.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
subsp. hominis C80]
gi|313655269|gb|EFS19014.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
subsp. hominis C80]
Length = 224
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ + +I + + +++AV+K V + + A G F EN+++
Sbjct: 1 MKVTENLEKIQAEINHHLEKSVIKTA-PNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV + FIGSLQS KV ++++ D + + R A ++ + + +
Sbjct: 60 FLEKKQA--LPKDVTMHFIGSLQSRKVKDVINDIDYLHALDRLSLAKEINK---RATHTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN E K GI ++ DF+ + + + GLM + P + L ++
Sbjct: 115 SCFIQVNVSGEETKHGIALSEVNDFIEQIKAFDNIKIVGLMTMAPYTDDKDYIHQLFKQL 174
Query: 181 A------RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ KL LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDEIKNLKLNYAPCEYLSMGMSNDYTIAVEEGATFIRIGTKLVGE 222
>gi|307183253|gb|EFN70122.1| Proline synthetase co-transcribed bacterial-like protein protein
[Camponotus floridanus]
Length = 248
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/246 (29%), Positives = 113/246 (45%), Gaps = 28/246 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ L+ KI +A R + LVAVSK+ ++ I A GQ F EN
Sbjct: 3 DIAANLKSVCDKILYAATK--RTSEHQYYEPRLVAVSKLQSTESILSAYKAGQRHFGENY 60
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS---- 110
+ E +K + + K ++Q FIG+LQ NKV++I+S+ ++ S
Sbjct: 61 VNELVEKALNPQILEKCKEIQWHFIGNLQRNKVNKILSVPNLYIIESVGNEKLADLLNNS 120
Query: 111 --LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPA- 166
+ L V +QVNT E +K+G + + + + L GLM I
Sbjct: 121 WPKFRKSDNCKLNVMVQVNTSQEEEKNGCDIVEVSTLVKHIINNCHNLKFMGLMTIGMFG 180
Query: 167 ---MGNPKPHFYLL--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
P P+F L +E+A + K +LSMGM+ D+E AI G+T+VR+G+ IF
Sbjct: 181 YDITNGPNPYFTCLIKCREKISNELAIDIKNIELSMGMSNDYEHAIELGSTNVRVGTAIF 240
Query: 216 GERPCQ 221
G RP +
Sbjct: 241 GNRPQK 246
>gi|182412322|ref|YP_001817388.1| alanine racemase domain-containing protein [Opitutus terrae PB90-1]
gi|177839536|gb|ACB73788.1| alanine racemase domain protein [Opitutus terrae PB90-1]
Length = 235
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 99/220 (45%), Gaps = 11/220 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ I + I A R V L+ V+K + G EN++QEA +K
Sbjct: 13 DAISKAIVEACIEAGRRPGEVQLLPVTKTQPAAAADYVARYGLPAVGENRVQEAIEKRAQ 72
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ + IG LQSNK FD I++V R K L + + LPV +QVN
Sbjct: 73 TQASVRWE--LIGHLQSNKARIAAQQFDRIQSVDRAKLLDPLDRAAAELGKTLPVLLQVN 130
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC 184
G + K G + + L VEGLM I P +P + F L + E
Sbjct: 131 AGRDPAKFGAELEDAPQLLEQALGRPHLRVEGLMTIAPLSSDPEVARRTFAALRTLRDEL 190
Query: 185 K------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++LSMGMT DF +AIA G+T+VR+G+ +FG R
Sbjct: 191 AARFGVPLSELSMGMTSDFRVAIAEGSTTVRVGTALFGAR 230
>gi|237738364|ref|ZP_04568845.1| proline synthetase associated protein [Fusobacterium mortiferum
ATCC 9817]
gi|229420244|gb|EEO35291.1| proline synthetase associated protein [Fusobacterium mortiferum
ATCC 9817]
Length = 228
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 16/225 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N ++ ++ I++ + V +AV+K VD++ + L CG +F ENK Q
Sbjct: 6 NIKNNIEEIQKDIKD----YSIYPEKVKFIAVTKYVDAEVMNSILDCGVKVFGENKAQVI 61
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K+ D++ FIG+LQ NKV I +I +V++ A + ++ +R
Sbjct: 62 KEKYEKYLSEGRKDIEWHFIGNLQKNKVKYIAPFVKLIHSVNKLSLAQEIDKRALQNNRV 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
+ V +++N E K G + + + +N+ GLM + P + + F
Sbjct: 122 IDVLLEINIAGEESKEGYELEELYKELPQLLELKNINIIGLMTMAPFVDDETLVRGVFRR 181
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
L EI E KLT+LSMGMT D+++A+ GAT +R+G I
Sbjct: 182 LREIKDELNKKTFNGKLTELSMGMTNDYKIALEEGATIIRVGRKI 226
>gi|257468458|ref|ZP_05632552.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
gi|317062721|ref|ZP_07927206.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
gi|313688397|gb|EFS25232.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
Length = 225
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + ++ I + +AV+K V +++ + CG +F ENK Q
Sbjct: 3 DIKKNISEIEEDI----KKHSLNPEKSRFIAVTKYVGPEEMLPIIDCGVKVFGENKAQVM 58
Query: 62 KKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + DV+ FIG+LQ NKV I +I +V++ A + + +R
Sbjct: 59 KDKQEKFNEMGIKDVEWHFIGNLQKNKVKYIAEYVKMIHSVNKLSLAQEIDKRAEQYNRV 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G + + + +N+ GLM + P + + + F
Sbjct: 119 IDVLLEINIAGEESKEGYDLEELYKELPQLMELKNINIIGLMTMAPFVEDEELLRSVFKR 178
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L EI E KL +LSMGMT D+++A+ GAT +R+G IF
Sbjct: 179 LREIKDELNEKWFKGKLVELSMGMTNDYKIALEEGATLIRVGRKIF 224
>gi|242010392|ref|XP_002425952.1| predicted protein [Pediculus humanus corporis]
gi|212509935|gb|EEB13214.1| predicted protein [Pediculus humanus corporis]
Length = 228
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 36/239 (15%)
Query: 2 SLGNKLQVFKQKIENSA--ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
++ L+ +++I N+ LVAVSK + I A +CGQ F EN +Q
Sbjct: 3 TIQKNLKTVQERIRNACLKRAVNLSNIEPRLVAVSKTKPIESIIEAYNCGQRHFGENYVQ 62
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK---- 115
E FIG LQ NKV++++S+ ++ + + +L
Sbjct: 63 EI--------------WHFIGHLQRNKVNKLLSIPNLFAVETVDSEKLADALNNYFSKTE 108
Query: 116 -QSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+++ + ++IQVNT E KSG PN+ + LNV GLM I
Sbjct: 109 DENKKINIFIQVNTSGEESKSGCKPNETCNLVKHIIDNCKHLNVMGLMTIGKYDNYLTSQ 168
Query: 174 FYLL----------SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ I + +T +LSMGM+ DFE AI +G+++VR+GS IFG R
Sbjct: 169 DKIDPDFQCLIDCKDNICKNLNVTFDQFELSMGMSADFERAILAGSSNVRVGSLIFGGR 227
>gi|167586211|ref|ZP_02378599.1| hypothetical protein BuboB_12783 [Burkholderia ubonensis Bu]
Length = 254
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 23 MSDLAVRLESVHRRIADAARAAGRAPAAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 82
Query: 60 EAKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L + FIG LQSNK + FD + ++ R K A L+ +
Sbjct: 83 ESIDKIDALADLRAALEWHFIGPLQSNKTRPVAERFDWVHSIDRLKIAQRLAEQRPAHLP 142
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P + L + GLM IP G+ +
Sbjct: 143 PLNVCVQVNISGEASKSGVAPADVAEVAHAVAALPSLRLRGLMAIPEPAGDADALRAPHR 202
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 203 ALRALFDALRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 253
>gi|330469286|ref|YP_004407029.1| alanine racemase domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328812257|gb|AEB46429.1| alanine racemase domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 248
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ + R + V+++AV+K + + G EN+ QEA
Sbjct: 16 LAAGLARVRTRIADACVAVGRDRTEVTMIAVTKTYPAADVIALAGLGVTDVGENRDQEAA 75
Query: 63 KKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL- 120
K + + FIG LQ NKV +V DV+++V + AS L +
Sbjct: 76 PKAEQVALAGVAPRWHFIGRLQRNKVKSVVRYADVVQSVDSVRLASALDAATTGRRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL------NVEGLMCIPPAMGNPKPHF 174
V++QV+ + + G +P+ + L + + GLM + P P+ F
Sbjct: 136 EVFVQVSIDGDPSRGGSVPDSADPDIGLGPVTAAVAASAGLRLAGLMAVAPLGWEPERAF 195
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ IA + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 196 ARLATIAETVRAEHPQAVALSAGMSGDLEAAIGHGATHVRVGSALLGMRPT 246
>gi|172057965|ref|YP_001814425.1| hypothetical protein Exig_1956 [Exiguobacterium sibiricum 255-15]
gi|171990486|gb|ACB61408.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15]
Length = 223
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 16/225 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +Q +Q ++ + K V L+ V+K V S+ L+ G EN+ +
Sbjct: 1 MSISENVQQVRQNMKQAYEKTD-QKKQVQLIGVTKSVSSEVAAELLAAGITALGENRPEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIG+LQ+ KV +++ DV+ ++ R A ++ + + +
Sbjct: 60 LTDKQT-VLGREACEWHFIGTLQTRKVRQVIDRIDVLHSLDRLHLAEEINK---RAKQPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K GI P F+ Q + V GLM + P + + F L
Sbjct: 116 DCFVQVNVSGEESKQGIDPEDVHSFLHEVGQYPMVRVIGLMTMAPLTEDEQVLRSVFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ E T+LSMGM+ D+++AI GAT VRIG+ +
Sbjct: 176 RVLRDEVATRQLPHAPCTELSMGMSSDYQIAIEEGATYVRIGTTL 220
>gi|71657511|ref|XP_817270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882450|gb|EAN95419.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 252
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 76/238 (31%), Positives = 106/238 (44%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++E ++ RP V+LVA SK ++ CG F EN +QE
Sbjct: 15 IAENYKNVLGRMEAASG--GRP---VTLVAASKTKSPACVQALYDCGHRCFGENYVQELV 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQS 117
+ D+Q FIG LQSNKV E++ D + V + +
Sbjct: 70 E--KAGVLPKDIQWHFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRGG 127
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPH 173
R L VYIQVNT E KSG P + + LNV G+M +P P+
Sbjct: 128 RSLNVYIQVNTSGEESKSGTEPGNPTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPENF 187
Query: 174 FYLLS---EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER--PCQT 222
LL +AR L LSMGMT DFE AI G+T VR+G+ +FG+R P ++
Sbjct: 188 ECLLQVREAVARALSLPADSLALSMGMTGDFENAIKMGSTVVRVGTALFGKRYCPPKS 245
>gi|325855519|ref|ZP_08171856.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola CRIS
18C-A]
gi|325483802|gb|EGC86761.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola CRIS
18C-A]
Length = 223
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ D V LVA+SK + I A GQ +F E++ QE
Sbjct: 3 DVAKNLREVL----------GSLPDGVRLVAISKFHPVEYIEAAYREGQRVFGESQEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV I +IE V K ++ + + R +
Sbjct: 53 ARKVES--LPKDIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARYDRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G P ++ ++ +++ GLM + + N +
Sbjct: 111 VLLELHIAEEESKYGFTPAACRELLENGEWKELRNVHISGLMMMASNVDNRSQIRGEMTL 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ E K + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKARFFADDPAFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPRVY 223
>gi|25010596|ref|NP_734991.1| hypothetical protein gbs0527 [Streptococcus agalactiae NEM316]
gi|23094949|emb|CAD46171.1| Unknown [Streptococcus agalactiae NEM316]
Length = 223
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 1 MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV ++++ D + K A+ + + + +
Sbjct: 61 FLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQK---RAQKPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 117 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 177 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 222
>gi|317056650|ref|YP_004105117.1| alanine racemase domain-containing protein [Ruminococcus albus 7]
gi|315448919|gb|ADU22483.1| alanine racemase domain protein [Ruminococcus albus 7]
Length = 244
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 11/224 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +EN+ + D + ++AV+K V +KI A+ G + EN++QE K
Sbjct: 21 DNYKRICYNVENAKAKYRSNDDKIDIMAVTKTVAPEKINFAIDQGITLLGENRVQEFLSK 80
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
K Q+ IG LQ+NKV I++ +I++V K A ++ +K R + V +
Sbjct: 81 KDSYNKS--AQVHMIGRLQTNKVKYIINEVSMIQSVDSLKLAKEINRLAVKNDRIMDVLL 138
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
++N G E+ KSG+ + + + Q + ++GLM IPP +G + F + I
Sbjct: 139 EINIGDEVSKSGVAADGLDELIYETAQLSNVRIKGLMAIPP-VGCGEDMFERMHSIFLRV 197
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
K + LSMGM+ D+ELAI G+ VRIG+ +FG R
Sbjct: 198 KENAVPNVSMEILSMGMSGDYELAIKHGSNLVRIGTALFGARNY 241
>gi|259047009|ref|ZP_05737410.1| cell division protein YlmE [Granulicatella adiacens ATCC 49175]
gi|259036328|gb|EEW37583.1| cell division protein YlmE [Granulicatella adiacens ATCC 49175]
Length = 227
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ + + +S R V + V+K +++ G FAEN+++
Sbjct: 1 MSIIKQNVSRIMNLVASSCNQVHRLSTEVCPIVVTKNRSQDEVQEMYDLGFRHFAENRVE 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ ++ +E D+ IG LQ KV ++++ D+ + R S + + +
Sbjct: 61 KLLERQEQFPQE-DIIWHLIGPLQKRKVKQVINHIDLFHALDRLSIMSEIDK---RLEQP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--- 176
L +++N E K G P + +Q +++V GLM + P + + +
Sbjct: 117 LDCLLEINVSGEETKHGFSPEEAFSAYKESKQYEKIHVAGLMTMAPFEASDEEIRFFFSR 176
Query: 177 LSEIARECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIF 215
L+++A++ + + LSMGM+ DF +AI GAT +RIG+ F
Sbjct: 177 LAQLAKKIEEKEKLSQPLQLSMGMSGDFPIAIQCGATYIRIGTSWF 222
>gi|289423142|ref|ZP_06424957.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
anaerobius 653-L]
gi|289156473|gb|EFD05123.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
anaerobius 653-L]
Length = 233
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + L+ + I A+ + R S+ L+ V+K VD + A+ G ENK QE
Sbjct: 3 SLKDNLERVRASINQVALSSNRDPKSILLLGVTKTVDVDVVESAIELGVEEVGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ ++ V+ IGSLQ+NKV I+ ++I ++ R + A ++L + R +
Sbjct: 63 ARKYDIIKDR--VKWHQIGSLQTNKVKYIIDKVELIHSLDRVRLADEINLRADRIDRDIK 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E K G+ P+ +DFV C ++ + G+M + A + K +
Sbjct: 121 CLVQVNMSGEESKHGLRPSDVEDFVRYCSSNCPRIRIVGMMTMAAADADEKGVRACFRGL 180
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K+ +LSMGM+ D+++AI G+T VR+G+ IFG+R
Sbjct: 181 RDLSQSIDRLGLDNVKMKELSMGMSGDYKIAIEEGSTIVRVGTSIFGKRDYS 232
>gi|159902932|ref|YP_001550276.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9211]
gi|159888108|gb|ABX08322.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9211]
Length = 213
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 3/201 (1%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A + + L+AVSK + +IR GQ+ F E++LQEA K+ L +++ FIG
Sbjct: 11 AGLSQLGIHLLAVSKGQPASEIRSLFIEGQIDFGESRLQEALTKFDVLNDLQEIRWHFIG 70
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NKV +V FDVI +V K A +S ++++ + QV + +K+G +
Sbjct: 71 RLQANKVRGVVKSFDVIHSVDSIKLAKRISRIAGEENKMPLIMFQVKFRKDDKKTGFEVD 130
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDF 197
+ + + + GLM IPPA + L E +A + L SMGM+RD+
Sbjct: 131 ELLEAWTKLITLPNVRICGLMTIPPAGLDRHGTKNLFKECRNLADQLSLQDCSMGMSRDW 190
Query: 198 ELAIASGATSVRIGSGIFGER 218
E AI +GAT +R+GS +FGER
Sbjct: 191 EDAIEAGATWIRLGSILFGER 211
>gi|58271268|ref|XP_572790.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114774|ref|XP_773685.1| hypothetical protein CNBH1400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256313|gb|EAL19038.1| hypothetical protein CNBH1400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229049|gb|AAW45483.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 259
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 107/249 (42%), Gaps = 35/249 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +Q I+N+A LVAVSK+ + I+ G F EN +QE
Sbjct: 16 DLRENIAAVQQDIDNAAG----TGAKPRLVAVSKLKPASDIKALYDAGYRHFGENYIQEM 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---MIKQSR 118
K D++ FIGSLQSNK S+ ++ + T L+ +
Sbjct: 72 VDKAAA--LPDDIKWHFIGSLQSNKSKLAASVPNLFILETLSSTKVADLLQKSLPPSRQS 129
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT------KDFVILCRQKYQLNVEGLMCIPPA-----M 167
L VY+QVNT E KSG+ P + + + + L + G+M I
Sbjct: 130 KLNVYLQVNTSGEDSKSGLSPLPSNSAELVDLAMHVIEKCPGLKLLGIMTIGSWDASHDP 189
Query: 168 GNPKPHFYLLS----EIARECKLT-----------KLSMGMTRDFELAIASGATSVRIGS 212
P P F L E+A+ +LSMGM+ DF AI G++SVR+G+
Sbjct: 190 TKPNPDFECLKRTRTELAKALAENGVQGAPKEDELELSMGMSADFVQAIKEGSSSVRVGT 249
Query: 213 GIFGERPCQ 221
IFGERP +
Sbjct: 250 RIFGERPKK 258
>gi|327539691|gb|EGF26298.1| pyridoxal phosphate-dependent enzyme, YBL036C type [Rhodopirellula
baltica WH47]
Length = 253
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 15/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K + +A R DSV +V V+K VD++ + G EN+ Q +
Sbjct: 21 IVDNWNSVKSAVSETAQRCGRSPDSVRVVGVTKYVDAEITSWLVEAGCHDLGENRPQLLE 80
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + +++ IG+LQ NKV ++ ++ ++ E+ + L E + QSR +
Sbjct: 81 SKF-QTLDDSNIRWHQIGNLQRNKVRRLLPAEPLVHAIASERLLNALHNECLLQSRSIDG 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-----KYQLNVEGLMCIP---PAMGNPKPHF 174
I++N E K+G+ +Q + ++ R+ LN+ GLM + F
Sbjct: 140 LIEINVSEEAAKTGLPIDQLEPLLVHWRELAGSSNAGLNITGLMAMAGWGTDETAAARQF 199
Query: 175 YLLSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E+ + L +LSMGM+ D+ AIA GAT VRIG+ +F
Sbjct: 200 AKLRELRDQMESPTGISLPELSMGMSGDYPAAIAEGATLVRIGTRLF 246
>gi|328696677|ref|XP_001943141.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Acyrthosiphon pisum]
gi|239791204|dbj|BAH72101.1| ACYPI009997 [Acyrthosiphon pisum]
Length = 278
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 103/242 (42%), Gaps = 24/242 (9%)
Query: 1 MSLGNK----LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS L +++IE A K LVAVSK + I GQ F EN
Sbjct: 31 MSTLENVIDGLNDVRRRIEVVAQKRKEGNVEPRLVAVSKTKPIEHIIGIYQKGQRYFGEN 90
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLF--DVIETVSREKTASLLSL 111
+QE K + K D++ FIG +Q NKVS+++ + VIET+ EK A+ ++
Sbjct: 91 YVQELITKSSDVELLEKCRDIKWHFIGHIQKNKVSKVLMVPGLHVIETIDSEKLANAVND 150
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
K ++ + I V +K + + L + GLM I
Sbjct: 151 GWKKLNKESKLKIMVQVNTSNEKEKFGVATDTVVDLCKFIIEKCDHLELIGLMTIGQYGY 210
Query: 169 NPKPHF--------YLLSEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ ++ + KL +LSMGM+ DFE AI G+T+VR+GS IFG
Sbjct: 211 DCSQGPNPDFLALIDCKRDVCDKLKLNPSEIELSMGMSDDFEQAIELGSTNVRVGSSIFG 270
Query: 217 ER 218
R
Sbjct: 271 FR 272
>gi|170589287|ref|XP_001899405.1| Hypothetical UPF0001 protein F09E5.8 in chromosome II [Brugia
malayi]
gi|158593618|gb|EDP32213.1| Hypothetical UPF0001 protein F09E5.8 in chromosome II, putative
[Brugia malayi]
Length = 268
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 84/240 (35%), Positives = 123/240 (51%), Gaps = 20/240 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + L++ +++IEN + A++ SLVAVSK S I+ GQ+ F EN +
Sbjct: 25 LVDNLRLIRRRIENVSKKAEQSPYWRGQKPSLVAVSKTKSSSLIQCCYDAGQMKFGENYI 84
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIK 115
QE K K +++ FIG++QSNK++++ + +ET+ +K AS+L E+ K
Sbjct: 85 QELVDKAEALKSKCPNIRWHFIGTVQSNKIAKLAEIDTLSCVETICNKKHASMLEKEVAK 144
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPA----MGNP 170
+R L V +QVNT E QK G P + + L G M I P
Sbjct: 145 HNRKLKVLVQVNTSKEKQKGGTTPEMAIELAEFIRIHCPSLKFGGFMTIGSFAHSVSETP 204
Query: 171 KPHFYLLSEIARE-CKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L E+ + C+LT+ LSMGM+ DFE AI G+TSVR+GS IFG R +T
Sbjct: 205 NRDFIQLFEVRKRFCELTQENERDFALSMGMSDDFEAAIMLGSTSVRVGSAIFGHRLLKT 264
>gi|317482742|ref|ZP_07941754.1| alanine racemase domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316915777|gb|EFV37187.1| alanine racemase domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 273
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 19 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 78
Query: 63 KKWI------------------------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
K + IG LQ+NK+ +++ + D IE
Sbjct: 79 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 138
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 139 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 198
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGAT 206
GLM I + + + + + R T+LSMGMT D AI G+T
Sbjct: 199 GLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGST 258
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 259 IVRVGTAIFGER 270
>gi|297544859|ref|YP_003677161.1| alanine racemase domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842634|gb|ADH61150.1| alanine racemase domain protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 202
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 12/201 (5%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ + +V FIG LQ NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYP--YLKEEVNFHFIGHLQRNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + +++ + +++N G E K GI P +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKNLIIDCLVEINIGGEESKYGISPEGMHNFVKEIE 118
Query: 151 QKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELA 200
+ + + GLM I P +P+F + E+ E K + LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVEVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGERPCQ 221
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQRQYN 199
>gi|307331670|ref|ZP_07610777.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
4113]
gi|306882696|gb|EFN13775.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
4113]
Length = 239
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAANLGRVTERISAACAEAGRKREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + S DV+++V R++ LS + +R + V
Sbjct: 68 PKAAECADL-PLIWHFVGQLQTNKVRSVSSYADVVQSVDRKRLVDALSRAAVGAAREMGV 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
IQV ++ + G+ P + + L ++GLM + P G P+ F
Sbjct: 127 LIQVALDADSDERGARGGVGPGGVERLAESVAEAEGLRLDGLMTVAPLTGPYEGRPRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRVAHPAANMVSAGMSSDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|159114248|ref|XP_001707349.1| Hypothetical protein, enzyme with a TIM-barrel fold [Giardia
lamblia ATCC 50803]
gi|157435453|gb|EDO79675.1| hypothetical protein, enzyme with a TIM-barrel fold [Giardia
lamblia ATCC 50803]
Length = 230
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSNKV 87
L+AVSK + I A + GQ +F EN +QE KK D++ FIG LQ+NK
Sbjct: 19 KLIAVSKTKPVEAILEAYAAGQRLFGENYVQELVKKAEAVQGVASDIEWHFIGHLQTNKA 78
Query: 88 SEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
++ + + + +TV ++ A LS + L V IQ+N E+ KSG +
Sbjct: 79 RDVAFIPNCVVQTVDSDRLARRLSELRPDELGPLRVMIQINISGELTKSGCTVEDAIELA 138
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTK---LSMGMTRDFELA 200
L +L + GLM I + L+ I + KL + LSMGM+ D++LA
Sbjct: 139 QLISALPRLRLIGLMTIGAPDASEYSFRALVDARNVIEQAVKLEEKLELSMGMSSDYQLA 198
Query: 201 IASGATSVRIGSGIFGERPCQ 221
+ GA VR+GS IFGER
Sbjct: 199 VKMGADYVRVGSAIFGERTYS 219
>gi|229823113|ref|ZP_04449182.1| hypothetical protein GCWU000282_00409 [Catonella morbi ATCC 51271]
gi|229787279|gb|EEP23393.1| hypothetical protein GCWU000282_00409 [Catonella morbi ATCC 51271]
Length = 228
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 24/231 (10%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+ + ++ Q +I+ ++ L+AVSK V + +I+ GQ F EN+
Sbjct: 1 MTQKLIQDRYQAVLDRIQ----KHSPEGNAPQLIAVSKTVGADQIQALYDLGQRHFGENR 56
Query: 58 LQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K + D+ FIG +Q+ +V E ++ D + + R A + +
Sbjct: 57 YPALLEKQAALAQTAPDIVWHFIGRVQTRQVKEFINQIDYLHALDRFDLAKEIQK---RA 113
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ ++QVN E K+G P Q + ++ + GLM + PA +
Sbjct: 114 DHPIKCFLQVNVSGEESKTGYEPEQVFAAIEQLAPYDKIEIVGLMTMAPADALEGELHFF 173
Query: 177 LSEIARECKL------------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L T+LSMGM++D+ +A GA+ +R+GS +F
Sbjct: 174 FKTL-KHLQLLVQEAGYPHAPCTELSMGMSQDYTIATEEGASFLRVGSALF 223
>gi|67479513|ref|XP_655138.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56472254|gb|EAL49752.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 229
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 15/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQ 59
MS KI LA + + V L+AVSK + I+ + +F EN +Q
Sbjct: 1 MS-EESYPSVIGKIN---HLASQREKPVCLIAVSKTKPKEAIQHLYNVYNHRVFGENYIQ 56
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVS--EIVSLFDVIETVSREKTASLLSLEMIKQ 116
E +K D++ FIG LQSNK+ ++TV + A L+ I
Sbjct: 57 ELHEKATELEEVCPDIEWHFIGRLQSNKLKLLVSTPHLKCVQTVHSIEIAEKLNKACINA 116
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
++ + V +Q+N+ E QK G+ + V + L+ G+M I K +F
Sbjct: 117 NKTIDVMVQINSSGEEQKGGVSVEEAISVVKEVMKCSNLHFIGIMTIGMVGD-SKKNFTT 175
Query: 177 LSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++A ++SMGM+ D+E AI GAT VR+G+ +FG R
Sbjct: 176 MKQLADTICSQEHLGSIEISMGMSSDYEQAIELGATMVRVGTALFGARDYS 226
>gi|167037282|ref|YP_001664860.1| alanine racemase domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040523|ref|YP_001663508.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256751715|ref|ZP_05492589.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914570|ref|ZP_07131886.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
gi|307724194|ref|YP_003903945.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
X513]
gi|320115698|ref|YP_004185857.1| alanine racemase domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854763|gb|ABY93172.1| alanine racemase domain protein [Thermoanaerobacter sp. X514]
gi|166856116|gb|ABY94524.1| alanine racemase domain protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749384|gb|EEU62414.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889505|gb|EFK84651.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
gi|307581255|gb|ADN54654.1| alanine racemase domain protein [Thermoanaerobacter sp. X513]
gi|319928789|gb|ADV79474.1| alanine racemase domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 202
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 12/201 (5%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ + +V+ FIG LQ+NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYP--YLKNEVKFHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + ++S + +++N G E K GI P + +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEME 118
Query: 151 QKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELA 200
+ + + GLM I P +P+F + E+ E K + LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGERPCQ 221
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQRQYN 199
>gi|283456835|ref|YP_003361399.1| hypothetical protein BDP_2003 [Bifidobacterium dentium Bd1]
gi|283103469|gb|ADB10575.1| Conserved hypothetical protein with alanine racemase, N-terminal
domain [Bifidobacterium dentium Bd1]
Length = 280
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L K+ + IG LQSNK+ +++ + +
Sbjct: 83 AKAEGLLKQCAQRGFTLGAATAEAVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVIN 142
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 143 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 202
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIAS 203
++GLM I + N + + + L +LSMGMT D ELAIA
Sbjct: 203 ELQGLMTIGAHVDNETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 262
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 263 GSTIVRVGTAIFGER 277
>gi|311063717|ref|YP_003970442.1| hypothetical protein BBPR_0280 [Bifidobacterium bifidum PRL2010]
gi|310866036|gb|ADP35405.1| Conserved hypothetical protein with alanine racemase, N-terminal
domain [Bifidobacterium bifidum PRL2010]
Length = 274
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IRDGVHRVLDAIAEAESAAGRAPGSVKLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLRKEW---------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K LR+ + IG LQ+NK+ +I+ + IE+V
Sbjct: 83 AKAEGLRRLCADRGFALGTGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVD 142
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A ++ + + + V ++VN E KSG P D Q + +EGLM
Sbjct: 143 GVELAQRIARRAVARGITVGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLM 202
Query: 162 CIPPAMGNPKPHFYLLSEIA---REC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + + T+LSMGMT D LAIA GAT VR
Sbjct: 203 TIGAHVDDEATIRACFAHLRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVR 262
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 263 VGTAIFGER 271
>gi|33239843|ref|NP_874785.1| TIM-barrel fold family protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237369|gb|AAP99437.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 207
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V LVAVSK + +IR S GQV F E++LQEA K L+ V+ FIGSLQ+
Sbjct: 11 PNGVKLVAVSKGQSTSQIRSLASQGQVDFGESRLQEALPKLNSLKDLKTVRWHFIGSLQA 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++V FDVI ++ K A +S ++ + V QV + K G P+ +
Sbjct: 71 NKVRQVVKAFDVIHSIDSLKLAKRISRISAEECKKPRVMAQVKFRNDPSKFGFTPDGLLE 130
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---RECKLTKLSMGMTRDFELAI 201
++V GLM I P + L E + L SMGM++D++ A+
Sbjct: 131 VWNEFIALPNIDVIGLMTISPKELDLNQRKILFRECRVFSEKLGLKDCSMGMSQDWKEAV 190
Query: 202 ASGATSVRIGSGIFGER 218
GAT +R+GS +FG R
Sbjct: 191 EEGATWIRVGSLLFGGR 207
>gi|317503300|ref|ZP_07961351.1| proline synthetase associated protein [Prevotella salivae DSM
15606]
gi|315665579|gb|EFV05195.1| proline synthetase associated protein [Prevotella salivae DSM
15606]
Length = 224
Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 96/236 (40%), Gaps = 28/236 (11%)
Query: 1 MSL--GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M++ L V LVA+SK + I A + GQ F E+
Sbjct: 1 MNVDVAKNLHEVI----------GNLPKGVELVAISKYHPCEYIEAAYAEGQRRFGESHE 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K+K D+Q FIG LQ+NKV I +IE V K ++ + K R
Sbjct: 51 QELKQKVEQ--LPKDIQWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAAKHDR 108
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYL 176
+ V ++++ E K G+ + + + +V+ GLM + N K
Sbjct: 109 VIKVLLELHIAEEETKYGLTIEDCRALLEEGTWRELEHVKICGLMMMASNTDNQKQIAAE 168
Query: 177 L---SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + S GM+ D+++A+ G+T VR+G+ IFG R
Sbjct: 169 FDTAKQFFDEIKNQYFSKEKDFKECSWGMSHDYKIAVEHGSTMVRVGTTIFGPRVY 224
>gi|149006734|ref|ZP_01830420.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
gi|147761649|gb|EDK68613.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
Length = 223
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELAGLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNIPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|310286820|ref|YP_003938078.1| Alanine racemase [Bifidobacterium bifidum S17]
gi|309250756|gb|ADO52504.1| Alanine racemase [Bifidobacterium bifidum S17]
Length = 274
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/249 (27%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IRDGVHRVLDAIAEAESAAGRAPGSVKLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLRKEW---------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K LR+ + IG LQ+NK+ +I+ + IE+V
Sbjct: 83 AKAEGLRRLCADRGFALGTGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVD 142
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A ++ + + + V ++VN E KSG P D Q + +EGLM
Sbjct: 143 GVELAQRIARRAVARGITVGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLM 202
Query: 162 CIPPAMGNPKPHFYLLSEIA---REC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + + T+LSMGMT D LAIA GAT VR
Sbjct: 203 TIGAHVDDEATIRACFAHLRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVR 262
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 263 VGTAIFGER 271
>gi|52353469|gb|AAU44036.1| unknown protein [Oryza sativa Japonica Group]
Length = 191
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 79/219 (36%), Gaps = 48/219 (21%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
D++ FIG+LQSNK +++ ++
Sbjct: 74 Q--LPEDIEWHFIGNLQSNKARALLAGVPNLD---------------------------- 103
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ V + P + E+ +E +
Sbjct: 104 --------------MVESVDDQKIANRLDRVVADLGRKPLKVLVQALANCRKEVCKELGI 149
Query: 187 TK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 150 PEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREYP 188
>gi|312133424|ref|YP_004000763.1| tim-barrel fold containing enzyme [Bifidobacterium longum subsp.
longum BBMN68]
gi|291517553|emb|CBK71169.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium longum
subsp. longum F8]
gi|311772653|gb|ADQ02141.1| Hypothetical TIM-Barrel fold containing enzyme [Bifidobacterium
longum subsp. longum BBMN68]
Length = 277
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 82
Query: 63 ------------------------KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ IG LQ+NK+ +++ + D IE
Sbjct: 83 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 142
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 143 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 202
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGAT 206
GLM I + + + + + R T+LSMGMT D AI G+T
Sbjct: 203 GLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGST 262
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 263 IVRVGTAIFGER 274
>gi|302550792|ref|ZP_07303134.1| alanine racemase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
gi|302468410|gb|EFL31503.1| alanine racemase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
Length = 239
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVERRIADACTAAGRERDEVTLIVVTKTYPASDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V D +++V R K + LS E ++ R L
Sbjct: 68 PKAAACMDL-PLTWHFVGQLQTNKVRSVVGYADFVQSVDRSKLVTALSKEAVRTGRELGC 126
Query: 123 YIQVN----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV ++ G+ P + L + L + GLM + P G + F
Sbjct: 127 LIQVALDAGESGRGERGGLAPEGIGELAGLVAEAPGLRLAGLMTVAPLTGEYAGREQAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 GRLLDLSTDLRRSHPTATMVSAGMSADLEQAVAAGATHVRVGSAVLGVRP 236
>gi|119486907|ref|XP_001262373.1| alanine racemase family protein, putative [Neosartorya fischeri
NRRL 181]
gi|119410530|gb|EAW20476.1| alanine racemase family protein, putative [Neosartorya fischeri
NRRL 181]
Length = 267
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/253 (24%), Positives = 97/253 (38%), Gaps = 32/253 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK-DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+L L ++ +A+ A RP + L+AVSK+ + I + +
Sbjct: 10 TLLANLSSVTSRVSTAALNANRPATKPIRLIAVSKLKPAADILALHNPPTNHLHFGENYL 69
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVS------------EIVSLFDVIETVSREKTASL 108
+ ++ FIG LQSNK E + + R
Sbjct: 70 QELLEKSKLLPPSIRWHFIGGLQSNKCVTLARDVRGLWAVESIDSEKKASLLDRGWGERS 129
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCI--- 163
+ + L V +QVNT E K+G+ P + + +L ++G+M I
Sbjct: 130 EEVRGVAHEDRLRVLVQVNTSGEENKAGVDPVAGAVPLARFIREKCPRLKLQGVMTIGAI 189
Query: 164 ----PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSVR 209
F L E I RE L +LSMGM+ DFE AI G+ VR
Sbjct: 190 ARSKATTPETENEDFVCLRETRDRIVRELGLQGDDAELELSMGMSEDFEGAIKLGSDEVR 249
Query: 210 IGSGIFGERPCQT 222
+G+ IFGERP ++
Sbjct: 250 VGTTIFGERPPKS 262
>gi|262202905|ref|YP_003274113.1| alanine racemase domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262086252|gb|ACY22220.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247]
Length = 259
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++++ + A RP +V L+ V+K + +R + G F E++ EA
Sbjct: 24 LAARLRAVRERLDAAVAAAHRPAGAVELLVVTKFFPADDVRRLIGLGVRTFGESREPEAG 83
Query: 63 KKWIPLR----KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI---- 114
+K +R IG++Q+ K + + +V R K A L+
Sbjct: 84 RKIAEVRAGGEITPPPTFDMIGTVQTKKAGGVARWARAVHSVDRRKLAERLADAAQAALD 143
Query: 115 --KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
+ L V +QV+ + + G++ D L++ GLM I P G
Sbjct: 144 AGDRDDPLGVLLQVSLDGDPHRGGLLEADLADVADAVAGSPALSLRGLMAIAPLAGERAH 203
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+ I + T+LS GM+ D E+A+A G+T VR+G+ I GERP
Sbjct: 204 WMAELARIHADFTRSHPDATELSAGMSGDLEIAVAHGSTCVRVGTAILGERP 255
>gi|77408380|ref|ZP_00785120.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
COH1]
gi|77413550|ref|ZP_00789738.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
515]
gi|77160379|gb|EAO71502.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
515]
gi|77172983|gb|EAO76112.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
COH1]
gi|319744577|gb|EFV96930.1| cell division protein YlmE [Streptococcus agalactiae ATCC 13813]
Length = 224
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV ++++ D + K A+ + + + +
Sbjct: 62 FLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQK---RAQKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|148241568|ref|YP_001226725.1| TIM-barrel fold family protein [Synechococcus sp. RCC307]
gi|147849878|emb|CAK27372.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. RCC307]
Length = 212
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + + Q++ V L+AVSK + +IR GQ F E+++QEA
Sbjct: 3 SLAQRYEAILQEL----------PPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEA 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ +FIG LQ+NKV ++ F I V A+ +S +
Sbjct: 53 ALKQQELADLADIDWQFIGRLQANKVRPVLKAFTTIHAVDSFNLAARVSRIAGELGLCPQ 112
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
+Y+Q+ + K+G+ + + + ++ +G+M IPP + L +E
Sbjct: 113 LYLQLKLRPDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELAEQDLGALFAEAV 172
Query: 180 -IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
A L SMGM+ D+ LA G+T VR+GS +FG
Sbjct: 173 GHADALGLAGRSMGMSGDWPLAAQQGSTVVRVGSALFGS 211
>gi|32477788|ref|NP_870782.1| enzyme with TIM-barrel fold [Rhodopirellula baltica SH 1]
gi|32448342|emb|CAD77859.1| conserved hypothetical protein-putative enzyme with TIM-barrel fold
[Rhodopirellula baltica SH 1]
Length = 253
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 15/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +A R DSV +V V+K VD++ + G EN+ Q +
Sbjct: 21 IVDNWNSVNSSVSETAQRCGRSPDSVRVVGVTKYVDAEITSWLVEAGCHDLGENRPQLLE 80
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + +++ IG+LQ NKV ++ ++ ++ E+ L E + QSR +
Sbjct: 81 SKF-QTLDDSNIRWHQIGNLQRNKVRRLLPAEPLVHAIASERLLDALHNECLLQSRSIDG 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-----KYQLNVEGLMCIP---PAMGNPKPHF 174
I++N E K+G+ +Q + ++ R+ LN+ GLM + F
Sbjct: 140 LIEINVSEEEAKTGLPIDQLEPLLVHWRELAGSSNAGLNINGLMAMAGWGTDETAAARQF 199
Query: 175 YLLSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E+ + L +LSMGM+ D+ AIA GAT VRIG+ +F
Sbjct: 200 AKLRELRDQMESSTGISLPELSMGMSGDYPAAIAEGATLVRIGTRLF 246
>gi|255035778|ref|YP_003086399.1| alanine racemase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254948534|gb|ACT93234.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053]
Length = 220
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 25/230 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +IE + LVAV+K + + A G +F ENK+QE
Sbjct: 3 SIADNLA----QIEQALRK------ETRLVAVTKTKPTTLLMEAYEAGARLFGENKVQEM 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ D++ IG LQ+NKV + ++ +V K ++ E K R +
Sbjct: 53 VAKYEE--LPKDIEWHMIGHLQTNKVKYMAPFVSLVHSVDSFKLLKEINKEARKNDRIID 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLSE 179
+Q+ E K G+ ++ + NV GLM + + +
Sbjct: 111 CLLQIYIAREETKFGLSEDEALALITSPELATLANVRIAGLMGMASNTDDQEAVRSEFRG 170
Query: 180 I-----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +LSMGM+ D+ +A+ G+T VR+GS IFG R
Sbjct: 171 LKSTFEAFKNHENAQVTMRELSMGMSGDYLIAMEEGSTLVRVGSAIFGSR 220
>gi|225859420|ref|YP_002740930.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
70585]
gi|225720359|gb|ACO16213.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
70585]
Length = 223
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|195108629|ref|XP_001998895.1| GI23376 [Drosophila mojavensis]
gi|193915489|gb|EDW14356.1| GI23376 [Drosophila mojavensis]
Length = 255
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++IE+ RP++ LVAVSK + I A + GQ F EN
Sbjct: 10 DIAAGLQHVLKRIESVLQ--SRPQEINTPKPLLVAVSKTKPVECIIEAYNAGQRHFGENY 67
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----- 109
+QE +K + D++ IG LQSNK+++++ L ++ + +
Sbjct: 68 VQELVEKSQHPDILAQCPDIKWHLIGHLQSNKINKVLKLPNLYMIQTVDSEKLANGIDAA 127
Query: 110 -SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA- 166
+ + + L V +QVNT E KSG+ + L G+M I
Sbjct: 128 WAKRQPEPTEPLRVLVQVNTSGEDVKSGVDASAAPSLYQYISDNLKHLKPVGIMTIGAYG 187
Query: 167 ---MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIF 215
P P F L ++ RE CK L SMGM+ D++ AI G+T VR+G+ IF
Sbjct: 188 FDYSNGPNPDFVALLQVQREICKANSLPADAVQVSMGMSNDYDRAIEMGSTIVRVGTAIF 247
Query: 216 GERPCQT 222
G RP +
Sbjct: 248 GHRPKAS 254
>gi|310828910|ref|YP_003961267.1| hypothetical protein ELI_3342 [Eubacterium limosum KIST612]
gi|308740644|gb|ADO38304.1| hypothetical protein ELI_3342 [Eubacterium limosum KIST612]
Length = 220
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 94/230 (40%), Gaps = 27/230 (11%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+ + + K+ I ++V+LV V+K ++ + + G ENK
Sbjct: 1 MTENVIAENIAAIKKDI----------PENVTLVGVTKHRSVEETQAVVDAGVYDLGENK 50
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QE K ++ V+ FIG LQ NKV ++ +I +V + E K
Sbjct: 51 VQEFLAKVDEVKGP--VRWHFIGHLQRNKVKYLMGKVSLIHSVHSVPLLKTIEKESAKHG 108
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V IQ N E KSG M + + + L V+GLMCI P +
Sbjct: 109 VKTNVLIQFNLAKEDSKSGFMAEEYEMVMKEVGNCPHLEVQGLMCIGPMTKKSDEIHKVF 168
Query: 178 SEIAR------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K+ LSMGMT D+ +AI GAT VRIG IF
Sbjct: 169 KHLKELYDTIEKEYHGENIKMQYLSMGMTDDYPIAIEEGATIVRIGRKIF 218
>gi|118595166|ref|ZP_01552513.1| hypothetical protein MB2181_05820 [Methylophilales bacterium
HTCC2181]
gi|118440944|gb|EAV47571.1| hypothetical protein MB2181_05820 [Methylophilales bacterium
HTCC2181]
Length = 221
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 16/227 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + L + Q+IE+ + R +VAVSK DS KI A+ GQ IF EN +Q
Sbjct: 1 MDKIKKNLLILNQQIES-IKASNRTV----IVAVSKKQDSSKIIEAIKSGQTIFGENYVQ 55
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K + K+++++ FIG +QSNK I F ++TV R KTA ++
Sbjct: 56 EALEK-QEILKKYNLEWHFIGPIQSNKCKAIAENFSWVQTVDRLKTAIRINDAREGMEPI 114
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
V +Q+N E K G+M +D + LN+ GLM IP N F L
Sbjct: 115 -NVCLQINISSEDSKGGVMLEAAEDLFKEVSKLKNLNIRGLMAIPSNTSNAHVLKKEFQL 173
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E K + LSMGM+ D+ AI GA +R+GS IFGER
Sbjct: 174 LKNAYDEFKKTYPSIDTLSMGMSNDYLEAIQQGANMIRVGSNIFGER 220
>gi|166711257|ref|ZP_02242464.1| hypothetical protein Xoryp_07245 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 230
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 101/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ + +A + R V L+AVSK ++ + + GQ F EN +QEA
Sbjct: 3 ASSLQQILDAMHAAAAVHART--DVRLLAVSKTKPAEAVAALAAQGQRAFGENYVQEADA 60
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR ++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 61 KIAQLRAL-GLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPLKVL 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQVN E K G P + +L + GLM IP P F + +
Sbjct: 120 IQVNIDDEDSKHGCAPEAIDSLAEAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRMQVL 179
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 180 FEQLKTRYRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGAR 222
>gi|77411425|ref|ZP_00787771.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
CJB111]
gi|77162511|gb|EAO73476.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
CJB111]
Length = 224
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV ++++ D + K A+ + + + +
Sbjct: 62 FLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQK---RAQKPI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|148984102|ref|ZP_01817397.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
gi|147923391|gb|EDK74504.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
gi|301800476|emb|CBW33115.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
Length = 223
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELMEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|326560147|gb|EGE10536.1| putative alanine racemase [Moraxella catarrhalis 103P14B1]
gi|326570756|gb|EGE20781.1| putative alanine racemase [Moraxella catarrhalis BC1]
gi|326573541|gb|EGE23504.1| putative alanine racemase [Moraxella catarrhalis 101P30B1]
Length = 236
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 97/225 (43%), Gaps = 10/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILA---KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L ++ KQ + + A L+AVSK I+ GQ F EN LQ
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPAKLIAVSKTKPVAMIQTLFHQGQQDFGENYLQ 71
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + + +IGS+Q NK +I FD + T+ R + + E +
Sbjct: 72 EALGKISQLSQL-PIIWHYIGSIQRNKTRDIAKHFDWVHTLER-EIIAQRLNEQRAGMQP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHF 174
L V IQ+N E KSG P + + LN+ G+M IP K F
Sbjct: 130 LNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTKELF 189
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ +SMGM+ D A+A G+T VR+G+ IFGER
Sbjct: 190 DAMARRFDLPNWDTISMGMSGDMTQAVAHGSTMVRVGTAIFGERD 234
>gi|169833346|ref|YP_001695046.1| YggS family pyridoxal phosphate protein [Streptococcus pneumoniae
Hungary19A-6]
gi|168995848|gb|ACA36460.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Hungary19A-6]
Length = 223
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLNAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQFVDYFHALDSVKLAEEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQKEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|303321047|ref|XP_003070518.1| hypothetical protein CPC735_062460 [Coccidioides posadasii C735
delta SOWgp]
gi|240110214|gb|EER28373.1| hypothetical protein CPC735_062460 [Coccidioides posadasii C735
delta SOWgp]
gi|320036044|gb|EFW17984.1| alanine racemase [Coccidioides posadasii str. Silveira]
Length = 280
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/256 (26%), Positives = 98/256 (38%), Gaps = 41/256 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +I +++ P SV LVAVSK+ + I + + +
Sbjct: 22 LLANLSSVTSRISAASV----PGSSVRLVAVSKLKPASDILALYNPPTSHLHFGENYLQE 77
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKV--------------------SEIVSLFDVIETVSR 102
+++ FIG LQSNK + E +
Sbjct: 78 LLEKSKILPPEIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTQKKATLLDKGWGERLKN 137
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLM 161
+ + L V++QVNT E KSG+ P+Q + + Q +L +EGLM
Sbjct: 138 HSAQQQQQEQSRAEPERLRVFVQVNTSGEESKSGVEPSQAVELCRFIREQCPRLKLEGLM 197
Query: 162 CI-------PPAMGNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGA 205
I F L E I +E L +LSMGM+ DFE AIA G+
Sbjct: 198 TIGAIARSKATTPETQNEDFDCLRETRDRICQELGLEGEEKLELSMGMSEDFEGAIAMGS 257
Query: 206 TSVRIGSGIFGERPCQ 221
VR+GS IFG RP +
Sbjct: 258 NEVRVGSTIFGARPPK 273
>gi|322690406|ref|YP_004219976.1| hypothetical protein BLLJ_0214 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455262|dbj|BAJ65884.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 277
Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 82
Query: 63 ------------------------KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ IG LQ+NK+ +++ + D IE
Sbjct: 83 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 142
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 143 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 202
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGAT 206
GLM I + + + + + R T+LSMGMT D AI G+T
Sbjct: 203 GLMTIGAHVDDERTIRAGFAHLRRTRDQIIASGAEGTADCTELSMGMTHDMTYAIEEGST 262
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 263 IVRVGTAIFGER 274
>gi|119179922|ref|XP_001241476.1| hypothetical protein CIMG_08639 [Coccidioides immitis RS]
Length = 268
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/256 (26%), Positives = 98/256 (38%), Gaps = 41/256 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +I +++ P SV LVAVSK+ + I + + +
Sbjct: 10 LLANLSSVTSRISAASV----PGSSVRLVAVSKLKPASDILALYNPPTSHLHFGENYLQE 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKV--------------------SEIVSLFDVIETVSR 102
+++ FIG LQSNK + E +
Sbjct: 66 LLEKSKILPPEIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTQKKATLLDKGWGERLKN 125
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLM 161
+ + L V++QVNT E KSG+ P+Q + + Q +L +EGLM
Sbjct: 126 HSAQQQQQQQGRAEPERLRVFVQVNTSGEESKSGVEPSQAVELCRFIREQCPRLKLEGLM 185
Query: 162 CI-------PPAMGNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGA 205
I F L E I +E L +LSMGM+ DFE AIA G+
Sbjct: 186 TIGAIARSKATTPETQNEDFDCLRETRDRICQELGLEGEEKLELSMGMSEDFEGAIAMGS 245
Query: 206 TSVRIGSGIFGERPCQ 221
VR+GS IFG RP +
Sbjct: 246 NEVRVGSTIFGARPPK 261
>gi|229495772|ref|ZP_04389500.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas endodontalis
ATCC 35406]
gi|229317346|gb|EEN83251.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas endodontalis
ATCC 35406]
Length = 242
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 93/236 (39%), Gaps = 29/236 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I + +LV VSK +I+ A G F EN++QE
Sbjct: 19 TIQERLDQIRPQI----------PSNATLVVVSKYHAVDEIKEAYDAGVRDFGENRVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K D++ IGSLQ NKV I I+++ + + +R +
Sbjct: 69 VSKVDK--LPEDIRWHLIGSLQRNKVKYIAPFITSIQSIESLALYDEVERRAAQHNRTID 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV-----ILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
++V E KSG+ ++ + F + + GLM + +
Sbjct: 127 CLVEVYVAQEETKSGVPYDEVEAFFAALLDRQAEGNAHIRLRGLMGMATHTDSEAEIRAE 186
Query: 177 LSEIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ + LSMGM+ D+ +A++ G+ VRIG+ I G R
Sbjct: 187 FAKLRGLFYRLKEGLMSQYPCFDTLSMGMSEDWSIALSEGSNMVRIGTAIMGPRAY 242
>gi|116610245|gb|ABK02969.1| Protein of unknown function UPF0001 [Arthrobacter sp. FB24]
Length = 242
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+G++L +++I + A RP + L+ V+K + +R + G EN+ QEA
Sbjct: 11 DIGSRLAAVRRRITAATEAAGRPDNPPELIVVTKFHPAADVRRLAALGVTDVGENRDQEA 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-- 119
+ + ++ F+G LQSNK +V I +V R + A+ L+ + +
Sbjct: 71 -SEKAASLSDLRLRWHFVGQLQSNKAKSVVRYAHAIHSVDRPQLAAALAKSIAAEQERTG 129
Query: 120 -----LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ + ++ + G + L + G+M + P +P F
Sbjct: 130 RAPLECFIQVSLDEDAGSHRGGASRLEVAPLADQLAGSPGLVLAGVMAVAPLGSDPDAAF 189
Query: 175 YLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E + +S GM++D E AI +GAT +RIGS I G RP
Sbjct: 190 GKLAEISAQLLREHPSAKGISAGMSQDLESAIRAGATHLRIGSDILGSRPA 240
>gi|23465017|ref|NP_695620.1| hypothetical protein BL0419 [Bifidobacterium longum NCC2705]
gi|23325620|gb|AAN24256.1| hypothetical protein in upf0001 [Bifidobacterium longum NCC2705]
Length = 294
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 101/252 (40%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 40 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 99
Query: 63 ------------------------KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ IG LQ+NK+ +++ + D IE
Sbjct: 100 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 159
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 160 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 219
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGAT 206
GLM I + + + + + R T+LSMGMT D AI G+T
Sbjct: 220 GLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGST 279
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 280 IVRVGTAIFGER 291
>gi|304570632|ref|YP_831069.2| hypothetical protein Arth_1575 [Arthrobacter sp. FB24]
Length = 248
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 99/231 (42%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+G++L +++I + A RP + L+ V+K + +R + G EN+ QEA
Sbjct: 17 DIGSRLAAVRRRITAATEAAGRPDNPPELIVVTKFHPAADVRRLAALGVTDVGENRDQEA 76
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-- 119
+ + ++ F+G LQSNK +V I +V R + A+ L+ + +
Sbjct: 77 -SEKAASLSDLRLRWHFVGQLQSNKAKSVVRYAHAIHSVDRPQLAAALAKSIAAEQERTG 135
Query: 120 -----LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ + ++ + G + L + G+M + P +P F
Sbjct: 136 RAPLECFIQVSLDEDAGSHRGGASRLEVAPLADQLAGSPGLVLAGVMAVAPLGSDPDAAF 195
Query: 175 YLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E + +S GM++D E AI +GAT +RIGS I G RP
Sbjct: 196 GKLAEISAQLLREHPSAKGISAGMSQDLESAIRAGATHLRIGSDILGSRPA 246
>gi|325915089|ref|ZP_08177417.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas vesicatoria
ATCC 35937]
gi|325538701|gb|EGD10369.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas vesicatoria
ATCC 35937]
Length = 285
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A R V L+AVSK + + + GQ F EN +QEA
Sbjct: 60 ASSLQQILDAIHAAAAEHARS--DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEAHT 117
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR+ ++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 118 KIAALREL-GLEWHLIGHLQSNKADIASQYFDWVQTVDRAKLIPLLARYRPDDRAPLNVL 176
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQVN E K G P+ + +L + GLM IP P F + ++
Sbjct: 177 IQVNIDDEDSKYGCAPDAIDRLADAIALQPRLQLRGLMAIPAPFPDQARRVSAFARMQDL 236
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 237 FAQLQQRHRQVDTLSMGMSADFAEAIAAGATMVRVGTALFGAR 279
>gi|149011473|ref|ZP_01832720.1| ylmE protein [Streptococcus pneumoniae SP19-BS75]
gi|147764463|gb|EDK71394.1| ylmE protein [Streptococcus pneumoniae SP19-BS75]
Length = 223
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD LS G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLSLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|254167572|ref|ZP_04874423.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|289596946|ref|YP_003483642.1| alanine racemase domain protein [Aciduliprofundum boonei T469]
gi|197623381|gb|EDY35945.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|289534733|gb|ADD09080.1| alanine racemase domain protein [Aciduliprofundum boonei T469]
Length = 218
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + Q++ V L+A +K ++I A++ G + EN +QE
Sbjct: 1 MNISENVIKIIQEL----------PPGVRLLAATKSRTVEEILEAINAGVDLIGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K+ + + V+ FIG LQ NKV + + +FDVIETV + A + +
Sbjct: 51 ALQKYEKIGNK--VEWHFIGHLQKNKVKKALQIFDVIETVDNVELAKEIDKRAKNMEKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
V I++N+ E QK+G+MP D L + G+M + P + P+
Sbjct: 109 FVMIEINSAREPQKAGVMPEYALDLADEIYSLEHLRLMGVMTMGPVVDEPEEIRPYFRNT 168
Query: 179 -EIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI E ++ LSMGMT + +A+ G VRIG+GIFG R
Sbjct: 169 KEIFDELRYIYGDEQIKYLSMGMTNTWRVAVEEGTNIVRIGTGIFGPRKY 218
>gi|282877895|ref|ZP_06286704.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccalis ATCC
35310]
gi|281299896|gb|EFA92256.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccalis ATCC
35310]
Length = 221
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L ++++ D V LVA+SK + I A + GQ +F E++ QE
Sbjct: 3 DVAKNLHDVQKRL----------PDDVCLVAISKYHPKEMIASAYAAGQRVFGESREQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV I +IE+V K ++ + +R +
Sbjct: 53 AEKVEA--LPNDIEWHFIGHLQTNKVKYIAPYISMIESVDSPKLLREINKHAARSNRVID 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G ++ +DF V R+ + + GLM + + + + +
Sbjct: 111 VLLELHIAEEATKYGFTLDKCRDFLEVGEWRELSNVRICGLMMMASNVDDERQIRQEMLT 170
Query: 178 ----------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + + S GM+ D+ +A+ G+T VR+GS IFGER
Sbjct: 171 AKDFFNEVKERYFADQPSFKQRSWGMSHDYLIAVTCGSTMVRVGSAIFGER 221
>gi|326564235|gb|EGE14469.1| putative alanine racemase [Moraxella catarrhalis 46P47B1]
gi|326571669|gb|EGE21684.1| putative alanine racemase [Moraxella catarrhalis BC7]
Length = 236
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 97/225 (43%), Gaps = 10/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILA---KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L ++ KQ + + A L+AVSK I+ GQ F EN LQ
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPAKLIAVSKTKPVAMIQTLFHQGQQDFGENYLQ 71
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + + +IGS+Q NK +I FD + T+ R + + E +
Sbjct: 72 EALGKISQLSQL-PIIWHYIGSIQRNKTRDIAKHFDWVHTLER-EIIAQRLNEQRAGMQP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHF 174
L V IQ+N E KSG P + + LN+ G+M IP K F
Sbjct: 130 LNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTKVLF 189
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ +SMGM+ D A+A G+T VR+G+ IFGER
Sbjct: 190 DAMARRFDLPNWDTISMGMSGDMAQAVAHGSTMVRVGTAIFGERD 234
>gi|326382564|ref|ZP_08204255.1| alanine racemase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198683|gb|EGD55866.1| alanine racemase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 246
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 14/220 (6%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+ +A A R V+L+ V+K + + L G+ F E++ EA +K +R D
Sbjct: 23 IDAAAESADRDPGEVTLLVVTKFFPADDVLRLLDLGEREFGESREPEAGRKMAAVRAASD 82
Query: 74 VQL--RFIGSLQSNKVSEIVSLFDVIETVSR------EKTASLLSLEMIKQSRFLPVYIQ 125
V+ IGS+Q K I + +V AS + + ++ L + +Q
Sbjct: 83 VEFAADMIGSVQRKKAGGIARWARRVHSVDSLALIEAFDGASSRAQDSGDRTGPLGMMLQ 142
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQL-NVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
V+ + + G+ + ++GLM I P +P L+EI
Sbjct: 143 VSLDGDPDRGGLPVSGLAQAADRVLASPDALRLDGLMLIAPLGMDPGEAMSRLAEIRSHF 202
Query: 182 --RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R +LS GM+ D E AIA G+T VR+G+ I G RP
Sbjct: 203 LDRYPDARELSAGMSGDLESAIAHGSTCVRVGTAIMGARP 242
>gi|294787206|ref|ZP_06752459.1| pyridoxal phosphate enzyme, YggS family [Parascardovia denticolens
F0305]
gi|315227251|ref|ZP_07869038.1| TIM-barrel fold protein [Parascardovia denticolens DSM 10105]
gi|294484562|gb|EFG32197.1| pyridoxal phosphate enzyme, YggS family [Parascardovia denticolens
F0305]
gi|315119701|gb|EFT82834.1| TIM-barrel fold protein [Parascardovia denticolens DSM 10105]
Length = 262
Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 21/240 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++ I +A A R V L+A K + +I A+ G + EN+ QE
Sbjct: 23 ISDAVRRAFDSIAQAAEQAGRRPSDVRLLAAVKTRNVGEIMAAVKTGVRLLGENRPQEVM 82
Query: 63 KKWIPLRKEWDVQ---------LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
L + + IG LQSNK+++I+ L +E+V + LS
Sbjct: 83 AVASGLAQACREEGLDLGEQVGFHLIGQLQSNKINKILGLVSTVESVDSLELGVKLSSRA 142
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
++ L V+++VN E KSG P + +D Q L V GLM + + +
Sbjct: 143 VRAGLSLDVFLEVNVSGEEAKSGCRPQEAEDLAFALAQLPNLVVRGLMTVGAHVDDEAQV 202
Query: 174 FYLLSEIAR---------ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + R E L LSMGM+ D+ LAIA GAT VR+G+ +FG+R +
Sbjct: 203 RSGFAHLRRIREGILSQGEAGLDSCRDLSMGMSGDYPLAIAEGATIVRLGTALFGQRAYR 262
>gi|296112563|ref|YP_003626501.1| putative alanine racemase [Moraxella catarrhalis RH4]
gi|295920257|gb|ADG60608.1| putative alanine racemase [Moraxella catarrhalis RH4]
gi|326561327|gb|EGE11685.1| putative alanine racemase [Moraxella catarrhalis 7169]
gi|326567615|gb|EGE17728.1| putative alanine racemase [Moraxella catarrhalis 12P80B1]
gi|326569725|gb|EGE19775.1| putative alanine racemase [Moraxella catarrhalis BC8]
gi|326573019|gb|EGE22995.1| putative alanine racemase [Moraxella catarrhalis CO72]
Length = 236
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 97/225 (43%), Gaps = 10/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILA---KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L ++ KQ + + A L+AVSK I+ GQ F EN LQ
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPAKLIAVSKTKPVAMIQTLFHQGQQDFGENYLQ 71
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L + + +IGS+Q NK +I FD + T+ R + + E +
Sbjct: 72 EALGKISQLSQL-PIIWHYIGSIQRNKTRDIAKHFDWVHTLER-EIIAQRLNEQRAGMQP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHF 174
L V IQ+N E KSG P + + LN+ G+M IP K F
Sbjct: 130 LNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTKVLF 189
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ +SMGM+ D A+A G+T VR+G+ IFGER
Sbjct: 190 DAMARRFDLPNWDTISMGMSGDMTQAVAHGSTMVRVGTAIFGERD 234
>gi|288800037|ref|ZP_06405496.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
299 str. F0039]
gi|288333285|gb|EFC71764.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
299 str. F0039]
Length = 225
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 106/237 (44%), Gaps = 29/237 (12%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+ + N+L K + V LVAVSK ++ IR A GQ IF E++
Sbjct: 1 MNKEQVVNQLHQIKDSL----------PLGVHLVAVSKFRPAEFIRAAYDAGQRIFGESQ 50
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+E K D+Q FIG LQ+NKV I +IE+V K ++ + IK +
Sbjct: 51 EKELSLKVEE--LPVDIQWHFIGHLQTNKVKYIARYISLIESVDSLKLLKEINKQAIKNN 108
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFY 175
R + + +++ E KSG+ P++ + + K NV GLM + + +
Sbjct: 109 RVIDILLELRVAQEDTKSGLTPDECLALLEEGKWKSLSNVRICGLMTMASYCPDEQQIAS 168
Query: 176 LL---SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + K S GM+ D+++AI GA VRIG+ IFGER
Sbjct: 169 EFTIAHQLFNKIKGEYFSDKEYFKYRSWGMSGDYKIAIEHGANLVRIGTTIFGEREY 225
>gi|307705385|ref|ZP_07642244.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621048|gb|EFO00126.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 223
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVNK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKNRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAEEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
+IQVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFIQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|116512746|ref|YP_811653.1| TIM-barrel fold family protein [Lactococcus lactis subsp. cremoris
SK11]
gi|116108400|gb|ABJ73540.1| Predicted enzyme with a TIM-barrel fold [Lactococcus lactis subsp.
cremoris SK11]
Length = 225
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K V++ R G AEN+ +
Sbjct: 1 MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV ++++ D + K A +S + +
Sbjct: 61 FLEKYEA-LKDCEITWHLIGNLQRRKVKKVINYVDYFHALDSLKLAQEISK---RAEHLI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+I+VN E K G ++ K+ + + + + GLM + P + +
Sbjct: 117 KCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T+LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KELQVEISEMNLPKIPCTELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|303255986|ref|ZP_07342014.1| hypothetical protein CGSSpBS455_10830 [Streptococcus pneumoniae
BS455]
gi|302597045|gb|EFL64163.1| hypothetical protein CGSSpBS455_10830 [Streptococcus pneumoniae
BS455]
Length = 223
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKARDVAWHLIGTLQRRKVKDVIQFVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + D + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLDILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQKEIQEEQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|208780013|ref|ZP_03247356.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254372081|ref|ZP_04987574.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569812|gb|EDN35466.1| conserved hypothetical protein [Francisella novicida GA99-3549]
gi|208744017|gb|EDZ90318.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 227
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 24/231 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ + + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVIQSIIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R +T
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARLAKT 224
>gi|242089533|ref|XP_002440599.1| hypothetical protein SORBIDRAFT_09g003850 [Sorghum bicolor]
gi|241945884|gb|EES19029.1| hypothetical protein SORBIDRAFT_09g003850 [Sorghum bicolor]
Length = 243
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 63/211 (29%), Positives = 93/211 (44%), Gaps = 16/211 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV +VAVSK IR G F EN +QE + D++ FIG+LQS
Sbjct: 32 PGSVRVVAVSKTKPVPVIRGVYDAGHRCFGENYVQELID--KAPQLPEDIEWHFIGNLQS 89
Query: 85 NKVSEIVSLFDVIE----TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
NK +++ ++ + + L + + L V +QVNT E K G+ P+
Sbjct: 90 NKARALLAGVPNLDMVESVDDEKIASRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPS 149
Query: 141 QT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL----LSE-IARECKLTK----LS 190
+ + L GLM I + P + E + +E + + LS
Sbjct: 150 GCVELAKHVKLNCPNLVFSGLMTIGMLDYSSTPENFKTLANCREGVCKELGIPEEQCELS 209
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 210 MGMSADFEQAIEMGSTNVRVGSTIFGAREYP 240
>gi|225870031|ref|YP_002745978.1| hypothetical protein SEQ_0622 [Streptococcus equi subsp. equi 4047]
gi|225699435|emb|CAW92926.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
Length = 223
Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I + A RP++SVS++AV+K VD + G AEN++ +
Sbjct: 1 MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V FIG+LQ KV E+++ D + K A + + +
Sbjct: 61 FLDKYEA-LKDRQVTWHFIGTLQRRKVKEVINKVDYFHALDSVKLALEIEK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + +L++ G+M + P + + +
Sbjct: 117 KCFLQVNISEEESKHGFKIAELDAAIEEISKMEKLHLVGIMTMAPIDASQQELRSIFQKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIGTSFF 222
>gi|225868961|ref|YP_002744909.1| hypothetical protein SZO_13950 [Streptococcus equi subsp.
zooepidemicus]
gi|225702237|emb|CAW99985.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 223
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I + A RP++SVS++AV+K VD + G AEN++ +
Sbjct: 1 MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V FIG+LQ KV E+++ D + K A + + +
Sbjct: 61 FLDKYEA-LKDRQVTWHFIGTLQRRKVKEVINKVDYFHALDSVKLALEIEK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + +L++ G+M + P + + +
Sbjct: 117 KCFLQVNISEEESKHGFKIAELDAAIEEISKVEKLHLVGIMTMAPIDASQQELRSIFQKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIGTSFF 222
>gi|145296115|ref|YP_001138936.1| hypothetical protein cgR_2035 [Corynebacterium glutamicum R]
gi|140846035|dbj|BAF55034.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 234
Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+LQ + +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K
Sbjct: 10 RLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKA 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIKQSR 118
+ D+ IG +QS K + I + +V EK A L + S
Sbjct: 70 LE---LPDMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSD 126
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
LP +IQ++ + + G +Q L EGLMC+PP +P+ F
Sbjct: 127 ELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQAR 186
Query: 179 EIAREC--KLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 187 DVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 232
>gi|148988712|ref|ZP_01820145.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
gi|168491452|ref|ZP_02715595.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC0288-04]
gi|147925913|gb|EDK76988.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
gi|183574205|gb|EDT94733.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC0288-04]
gi|301794646|emb|CBW37097.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
Length = 223
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|15901500|ref|NP_346104.1| ylmE protein [Streptococcus pneumoniae TIGR4]
gi|111658555|ref|ZP_01409218.1| hypothetical protein SpneT_02000311 [Streptococcus pneumoniae
TIGR4]
gi|148993763|ref|ZP_01823190.1| ylmE protein [Streptococcus pneumoniae SP9-BS68]
gi|148997716|ref|ZP_01825280.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
gi|149001949|ref|ZP_01826903.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
gi|168483465|ref|ZP_02708417.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1873-00]
gi|168486966|ref|ZP_02711474.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1087-00]
gi|168488621|ref|ZP_02712820.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
SP195]
gi|168493566|ref|ZP_02717709.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC3059-06]
gi|194397968|ref|YP_002038279.1| YlmE protein [Streptococcus pneumoniae G54]
gi|221232402|ref|YP_002511555.1| hypothetical protein SPN23F_16660 [Streptococcus pneumoniae ATCC
700669]
gi|225855095|ref|YP_002736607.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
JJA]
gi|237650671|ref|ZP_04524923.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae CCRI 1974]
gi|298230130|ref|ZP_06963811.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254431|ref|ZP_06978017.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298503409|ref|YP_003725349.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
gi|307068290|ref|YP_003877256.1| hypothetical protein SPAP_1670 [Streptococcus pneumoniae AP200]
gi|4009471|gb|AAC95441.1| YlmE [Streptococcus pneumoniae G54]
gi|14973156|gb|AAK75744.1| ylmE protein [Streptococcus pneumoniae TIGR4]
gi|147756215|gb|EDK63257.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
gi|147759758|gb|EDK66748.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
gi|147927719|gb|EDK78743.1| ylmE protein [Streptococcus pneumoniae SP9-BS68]
gi|172043110|gb|EDT51156.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1873-00]
gi|183570133|gb|EDT90661.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1087-00]
gi|183572682|gb|EDT93210.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
SP195]
gi|183576347|gb|EDT96875.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC3059-06]
gi|194357635|gb|ACF56083.1| YlmE protein [Streptococcus pneumoniae G54]
gi|220674863|emb|CAR69438.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
700669]
gi|225722717|gb|ACO18570.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
JJA]
gi|298239004|gb|ADI70135.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
gi|306409827|gb|ADM85254.1| Predicted enzyme with a TIM-barrel fold [Streptococcus pneumoniae
AP200]
gi|332072494|gb|EGI82977.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
gi|332074000|gb|EGI84478.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
gi|332199694|gb|EGJ13769.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
gi|332200224|gb|EGJ14297.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
gi|332201091|gb|EGJ15162.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
Length = 223
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|88856516|ref|ZP_01131173.1| hypothetical protein A20C1_02184 [marine actinobacterium PHSC20C1]
gi|88814170|gb|EAR24035.1| hypothetical protein A20C1_02184 [marine actinobacterium PHSC20C1]
Length = 228
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 8/223 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL +L +I ++A A R S++ + ++K + +R G F EN+ QEA
Sbjct: 6 SLEQRLADIDGQIADAARAASRDLSSITRIVITKFHPASLVRELYGLGVRDFGENRHQEA 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D + F+G LQS K ++ S + +V R+ + LS E L
Sbjct: 66 QPKAAELVDL-DARWSFVGQLQSKKARQVRSYCHAVHSVDRDSLITALSSE--DAVVPLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V+IQVN + + G++P++ + F + + GLM + P +P+P F L ++
Sbjct: 123 VFIQVNLTDDPARGGVVPSELEAFADRVANASGIELRGLMGVAPLEVDPRPAFAALRSLS 182
Query: 182 RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DF AIA GAT +RIG+ I G+RP
Sbjct: 183 ERIGAQHPHARALSMGMSGDFAQAIAEGATHLRIGTAITGKRP 225
>gi|319939624|ref|ZP_08013983.1| YggS family pyridoxal phosphate enzyme [Streptococcus anginosus
1_2_62CV]
gi|319811213|gb|EFW07519.1| YggS family pyridoxal phosphate enzyme [Streptococcus anginosus
1_2_62CV]
Length = 223
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + + A R K+SV ++AV+K VDS + + G EN++ +
Sbjct: 1 MDLEKNTYQVLENVAQATQKANRSKNSVEVIAVTKYVDSSTAKELVKAGIHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E V IG+LQ KV ++++ D + K A ++ + +
Sbjct: 61 FLEKYQALKDER-VTWHLIGTLQRRKVKDVINYVDYFHALDSVKLAQEINK---RAEHII 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEASKHGFAIEEIDTILPELEKLENIQIVGLMTMAPIEADEAELNVIFQQA 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T LSMGM+ D+ +AIA+G+T VRIG+ F
Sbjct: 177 YQLQQRLQRKQLPNMPFTDLSMGMSHDYAIAIANGSTFVRIGTAFF 222
>gi|15673850|ref|NP_268025.1| hypothetical protein L120355 [Lactococcus lactis subsp. lactis
Il1403]
gi|12724900|gb|AAK05966.1|AE006416_11 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|326407361|gb|ADZ64432.1| pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis CV56]
Length = 225
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K VD+ R G AEN+ +
Sbjct: 1 MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV ++++ D + K A ++ + +
Sbjct: 61 FLEKYEALKDL-EITWHLIGNLQRRKVKQVINYVDYFHALDSLKLAQEINK---RAEHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+I++N E K G N+ + + + + + GLM + P + +
Sbjct: 117 KCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T+LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|91216469|ref|ZP_01253435.1| hypothetical protein P700755_02917 [Psychroflexus torquis ATCC
700755]
gi|91185263|gb|EAS71640.1| hypothetical protein P700755_02917 [Psychroflexus torquis ATCC
700755]
Length = 218
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 15/220 (6%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
K+ I+ +++ LVAVSK ++ + A GQ IF ENK+QE KW
Sbjct: 4 SIKEHIKTFTDELG---ENIDLVAVSKTKPNEDLLEAYKAGQRIFGENKVQEMTDKWDA- 59
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
D++ +G +Q+NKV + D+I V K ++ ++ R + +QV
Sbjct: 60 -LPKDIKWHMVGHVQTNKVKYMAPYVDLIHAVQNMKLLKEINKRAVENDRVIDCLLQVKI 118
Query: 129 GYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK- 185
E K G+ P K F+ + + + ++GLM + + + + K
Sbjct: 119 AEEESKYGMSPEDLKLFLKDDKLAELKNVRLKGLMAMATFTEDEEQIHREFKILETLYKE 178
Query: 186 -------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+++A+ VRIGS IFG R
Sbjct: 179 TSQTQKDFSILSMGMSGDYKIAMQHDTNMVRIGSSIFGAR 218
>gi|307709601|ref|ZP_07646054.1| alanine racemase, N-terminal domain protein [Streptococcus mitis
SK564]
gi|307619637|gb|EFN98760.1| alanine racemase, N-terminal domain protein [Streptococcus mitis
SK564]
Length = 223
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTERVFREVAEASLSAHRESGSVSVIAVTKYVDVLTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYQA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAEEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELAKLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQKEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|269215871|ref|ZP_06159725.1| pyridoxal phosphate enzyme, YggS family [Slackia exigua ATCC
700122]
gi|269130821|gb|EEZ61897.1| pyridoxal phosphate enzyme, YggS family [Slackia exigua ATCC
700122]
Length = 232
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ + ++ ++ + R +V ++ VSK VD + A++ G F EN+ E
Sbjct: 1 MALKDRYDAIRTQVADACAASGRDASAVRIIGVSKTVDVDAVAEAVAAGIHDFGENRPDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K E + FIG++QS + ++V +I ++ R A +
Sbjct: 61 LARKHDAFPSE---RWHFIGNIQSRHLKDVVGRACLIHSLYRPSHADKIDRLADAAGIVQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLS 178
V I+VN G E K G+ ++ + C + V GLM + P F L+
Sbjct: 118 DVLIEVNDG-EENKQGLSASELPAMIEHCFGLAHVRVRGLMMMAPKDSPEEADASFARLA 176
Query: 179 EIARE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I E L +LSMGM+ D+ AI G+T VRIG IF
Sbjct: 177 CIREEMRQRFGAQGLTLDLDELSMGMSDDYLQAIPYGSTMVRIGRAIF 224
>gi|325524417|gb|EGD02494.1| hypothetical protein B1M_21228 [Burkholderia sp. TJI49]
Length = 198
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVS 92
SK + +R A + GQ F EN +QE+ K L ++ FIG LQSNK +
Sbjct: 1 SKPFPADDVRAAHAAGQRAFGENYVQESVDKIESLADLRASLEWHFIGPLQSNKTRAVAE 60
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
FD + +V R K A L+ + L V +QVN E KSG+ P D
Sbjct: 61 RFDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPADVADVARAVAAL 120
Query: 153 YQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASG 204
L + GLM IP + + L + + L LSMGM+ D + A+ G
Sbjct: 121 PSLRLRGLMAIPEPAADIEAQRAPHRALRALFDALRADGLPLDTLSMGMSADLDAAVLEG 180
Query: 205 ATSVRIGSGIFGERPCQ 221
AT VR+G+ IFG R
Sbjct: 181 ATIVRVGTAIFGARDYS 197
>gi|149021241|ref|ZP_01835487.1| ylmE protein [Streptococcus pneumoniae SP23-BS72]
gi|225861493|ref|YP_002743002.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Taiwan19F-14]
gi|307127875|ref|YP_003879906.1| hypothetical protein SP670_1752 [Streptococcus pneumoniae 670-6B]
gi|147930342|gb|EDK81326.1| ylmE protein [Streptococcus pneumoniae SP23-BS72]
gi|225726653|gb|ACO22504.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Taiwan19F-14]
gi|306484937|gb|ADM91806.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327389851|gb|EGE88196.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
gi|332072833|gb|EGI83314.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
Length = 223
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +I+ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDIIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|312066549|ref|XP_003136323.1| hypothetical protein LOAG_00735 [Loa loa]
gi|307768518|gb|EFO27752.1| hypothetical protein LOAG_00735 [Loa loa]
Length = 265
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 82/236 (34%), Positives = 122/236 (51%), Gaps = 20/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + LQ+ ++IEN++ A++ SL+AVSK S I+ GQ+ F EN +
Sbjct: 25 LVDNLQLVLRRIENASKKAEQSPYWRGQKPSLIAVSKTKSSSLIQCCYDAGQMKFGENYI 84
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIK 115
QE K K ++Q FIG++QSNK++++ + + +ET+ +K +S+L E+ K
Sbjct: 85 QELADKAKTLKSKCPNIQWHFIGTIQSNKIAKLAEINNLSCVETICNKKHSSILEKEIAK 144
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPA----MGNP 170
+R L V +QVNT E QK G P + + L G M I P
Sbjct: 145 HNRTLKVLVQVNTSKEKQKGGTTPEMAVELAEFIRVHCPSLKFSGFMTIGSFARNMSETP 204
Query: 171 KPHFYLLSEIARE-CKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++ + C+LT+ LSMGM+ DFE AI G+TSVRIG+ IFG R
Sbjct: 205 NRDFIELFKVRKTFCELTEENEENFELSMGMSNDFEAAIMLGSTSVRIGNAIFGHR 260
>gi|291236536|ref|XP_002738198.1| PREDICTED: proline synthetase co-transcribed homolog [Saccoglossus
kowalevskii]
Length = 298
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 70/246 (28%), Positives = 103/246 (41%), Gaps = 30/246 (12%)
Query: 7 LQVFKQKIENSAILAKRPKD----------SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L+ ++I+ + + LVAVSK I+ A GQ F EN
Sbjct: 17 LKSVLERIQTACDSRSQKSKCNKFQDLPKVQPRLVAVSKTKAISTIQTAYIHGQRHFGEN 76
Query: 57 KLQEAKKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLL 109
+ E +K + D++ ++G LQ NKV++I+ + ++ S +
Sbjct: 77 YVHEIIEKATDPTIINECCDIRWHYVGHLQRNKVNKIIGIPNLFMVESLDTPKLADVLNA 136
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI----P 164
+ K+ L V +QVNT E K G + L GLM I
Sbjct: 137 AWGRKKKVGKLKVMVQVNTSNEASKHGCKLCDAESLAGHILLSCSNLEFNGLMTIGRVNH 196
Query: 165 PAMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F L EI ++ L +LSMGM+ DFE AI+ G+T+VR+GS IFG
Sbjct: 197 ELSQGPNPDFQQLVQCREEICKKFMLDKATVELSMGMSNDFEHAISVGSTNVRVGSAIFG 256
Query: 217 ERPCQT 222
RP T
Sbjct: 257 ARPDAT 262
>gi|260592419|ref|ZP_05857877.1| pyridoxal phosphate enzyme, YggS family [Prevotella veroralis
F0319]
gi|260535655|gb|EEX18272.1| pyridoxal phosphate enzyme, YggS family [Prevotella veroralis
F0319]
Length = 223
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + D V LVA+SK + I VA GQ IF E+ QE
Sbjct: 3 DVAKNLHEVLDTL----------PDGVKLVAISKFHPKEYIEVAYREGQRIFGESHEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K D++ FIG LQ+NKV I S +IE V K ++ + K +R +
Sbjct: 53 AGKVQS--LPQDIEWHFIGHLQTNKVKYIASYISMIEAVDTVKLLKEINKQAAKYNRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G PN ++F R+ +++ GLM + + + + +
Sbjct: 111 VLLELHIAEEESKYGFTPNACREFLKSGEWRELKNVHISGLMMMASNVEDQEQIRKEMIF 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S + E K + S GM+ D+ +A+ +T VR+G+ IFG R
Sbjct: 171 ASNLFDELKASYFSDDPEFKERSWGMSHDYPIAVECHSTMVRVGTAIFGPRVY 223
>gi|281492481|ref|YP_003354461.1| pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis KF147]
gi|281376145|gb|ADA65636.1| Pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis KF147]
Length = 225
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K VD+ R G AEN+ +
Sbjct: 1 MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IGSLQ KV ++++ D + K A ++ + +
Sbjct: 61 FLEKYEALKDL-EITWHLIGSLQRRKVKQVINYVDYFHALDSLKLAQEINK---RAEHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+I++N E K G N+ + + + + + GLM + P + +
Sbjct: 117 KCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T+LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|322688386|ref|YP_004208120.1| hypothetical protein BLIF_0195 [Bifidobacterium longum subsp.
infantis 157F]
gi|320459722|dbj|BAJ70342.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 273
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 36/247 (14%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI- 66
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K
Sbjct: 24 HRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADG 83
Query: 67 -----------------------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
+ IG LQ+NK+ +++ + D IE+V
Sbjct: 84 LAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSI 143
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
+ A ++ + + V ++VN E KSG P+ D L ++GLM I
Sbjct: 144 ELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTI 203
Query: 164 PPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGATSVRIG 211
+ + + + + R T+LSMGMT D AI G+T VR+G
Sbjct: 204 GAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIVRVG 263
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 264 TAIFGER 270
>gi|260945681|ref|XP_002617138.1| hypothetical protein CLUG_02582 [Clavispora lusitaniae ATCC 42720]
gi|238848992|gb|EEQ38456.1| hypothetical protein CLUG_02582 [Clavispora lusitaniae ATCC 42720]
Length = 268
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 59/239 (24%), Positives = 87/239 (36%), Gaps = 27/239 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K++N+ V LVAVSK+ S I + G F EN +QE
Sbjct: 34 LVENYERVLSKVKNAE-----TSKPVRLVAVSKLKPSSDIMALYNHGVRHFGENYVQELT 88
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+Q FIGSLQ+ K ++ D + V +
Sbjct: 89 AKAKE--LPKDIQWHFIGSLQTGKCKDLAKDIDNLYAVETIDALKKCKKLENARRAVDFA 146
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ----------KYQLNVEGLMCIPPAMGNP-- 170
I V + + + +L EGLM I +
Sbjct: 147 PINVYLQINTSSEDQKAGYRLENMEEIYETVDFLTNKTECKKLKFEGLMTIGSFAESTSE 206
Query: 171 ---KPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L+E+ + +LSMGM+ DF AI+ G++SVR+G+ IF RP
Sbjct: 207 SGLNQDFAKLAELKKTLDEKFSLDLQLSMGMSNDFTTAISQGSSSVRVGTSIFEARPPN 265
>gi|20808029|ref|NP_623200.1| TIM-barrel fold family protein [Thermoanaerobacter tengcongensis
MB4]
gi|254478764|ref|ZP_05092132.1| conserved hypothetical protein TIGR00044 [Carboxydibrachium
pacificum DSM 12653]
gi|20516607|gb|AAM24804.1| predicted enzyme with a TIM-barrel fold [Thermoanaerobacter
tengcongensis MB4]
gi|214035276|gb|EEB75982.1| conserved hypothetical protein TIGR00044 [Carboxydibrachium
pacificum DSM 12653]
Length = 197
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K I+ A+SCG EN++QE +K+ L+ + D FIG LQ+NKV I
Sbjct: 1 MAATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVD--FHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ ++ ++ REK A + ++ + I+VN G E K GI P + + V
Sbjct: 59 IDKVKLVHSLDREKLAEEIDKRAKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLE 118
Query: 151 QKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELA 200
+ + ++GLM I P +P+F + E+ + K LSMGM+ D+ +A
Sbjct: 119 KYDNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQRNVEAQYLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGER 218
+ GA VRIG+ IFGER
Sbjct: 179 VEEGANIVRIGTAIFGER 196
>gi|22298581|ref|NP_681828.1| hypothetical protein tll1037 [Thermosynechococcus elongatus BP-1]
gi|22294761|dbj|BAC08590.1| tll1037 [Thermosynechococcus elongatus BP-1]
Length = 233
Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 15/224 (6%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ + ++ L V L+AVSK + + IR A G F E+++QEA K
Sbjct: 5 AEIRDR---ASHLKSTLPPHVRLIAVSKFMPAAAIRAAYEAGIRDFGESRVQEAASKRAE 61
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQV 126
L D+ IG LQ+NKV + + LFD I TV R K A + + ++ + +QV
Sbjct: 62 LADLTDITWHLIGHLQTNKVRQALQLFDWIHTVDRWKLAERIDTLLKERGAASPRCLLQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA----- 181
+ QK G + + + L GLM I P P + E+
Sbjct: 122 KLRPDPQKYGWEKSDLEAALPQLDALLHLRCWGLMTILPLGLAPSEQLQVFQELRAWGEE 181
Query: 182 ------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + + SMGMT+D+ LA+ +GAT VRIG+ IFG+RP
Sbjct: 182 LSTKGWQQLRWQEYSMGMTQDYPLAVQAGATMVRIGTAIFGDRP 225
>gi|306817808|ref|ZP_07451549.1| YggS family pyridoxal phosphate enzyme [Mobiluncus mulieris ATCC
35239]
gi|304649457|gb|EFM46741.1| YggS family pyridoxal phosphate enzyme [Mobiluncus mulieris ATCC
35239]
Length = 281
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 53/271 (19%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +L ++++ +A + R V ++ VSK I+ A++ G F EN+ Q
Sbjct: 1 MTGFQERLVGIQERVAAAARASGREPRDVRILPVSKTHPISMIQAAMAAGAREFGENRPQ 60
Query: 60 EAKKKWIP------------------------------------------LRKEWDVQLR 77
+ K K +
Sbjct: 61 DLAAKAQELGANLRRSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWV 120
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG+LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+
Sbjct: 121 MIGNLQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNVSGETVKHGV 180
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLSEIARE-----CKLT 187
P DF L + G M + F L I + +
Sbjct: 181 EPGVALDFAGRVAALPGLRLTGFMGVAAPLSVVGESGVHEAFARLRAIRDAAVVSIPEAS 240
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE+AIA G+T VR+GSG+FG+R
Sbjct: 241 GLSMGMSGDFEIAIAEGSTCVRLGSGLFGQR 271
>gi|239622623|ref|ZP_04665654.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514620|gb|EEQ54487.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 271
Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 19 ITDGVHRVLDRIAEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEII 78
Query: 63 KKWI----------------------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K + IG LQ+NK+S+++ + D IE+V
Sbjct: 79 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKISKVLPVVDTIESV 138
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L ++GL
Sbjct: 139 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMDGLRLQGL 198
Query: 161 MCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGATSV 208
M I + + + + + R T+LSMGMT D AI G+T V
Sbjct: 199 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIV 258
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 259 RVGTAIFGER 268
>gi|195977733|ref|YP_002122977.1| pyridoxaL 5'-phosphate dependent enzyme class III family
[Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195974438|gb|ACG61964.1| pyridoxaL 5'-phosphate dependent enzyme class III family
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 224
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I + A RP++SVS++AV+K VD + G AEN++ +
Sbjct: 2 MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V FIG+LQ KV E+++ D + K A + + +
Sbjct: 62 FLDKYEA-LKDRQVTWHFIGTLQRRKVKEVINKVDYFHALDSVKLALEIEK---RADHPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
++QVN E K G + + + +L++ G+M + P + + +
Sbjct: 118 KCFLQVNISEEESKHGFKIAELDAAIEEISKMEKLHLVGIMTMAPIDASQQELRSIFQKA 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 178 NQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIGTSFF 223
>gi|322388908|ref|ZP_08062500.1| cell division protein YlmE [Streptococcus infantis ATCC 700779]
gi|321140291|gb|EFX35804.1| cell division protein YlmE [Streptococcus infantis ATCC 700779]
Length = 223
Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L Q++ + R SVS++AV+K VD + G EN++ +
Sbjct: 1 MDLKENTNQVFQQVTKAIQETGREDGSVSVIAVTKYVDIVTAANLIDQGVKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V IGSLQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYHA-LSDKGVTWHLIGSLQRRKVKDVIPFVDYFHALDSLKLAQEIQK---RADRTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G + + Q+ GLM + P + + E
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLTVLPDLSSLDQIEYVGLMTMAPFEAQTEELQKIFKET 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QELQQYIREQQFPNMPMTELSMGMSRDYKEAIQCGSTFVRIGTAFF 222
>gi|313679728|ref|YP_004057467.1| alanine racemase domain protein [Oceanithermus profundus DSM 14977]
gi|313152443|gb|ADR36294.1| alanine racemase domain protein [Oceanithermus profundus DSM 14977]
Length = 213
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 8/193 (4%)
Query: 27 SVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
SV LVAV+K D +I R L G EN++QEA+ K + + FIG LQ N
Sbjct: 23 SVRLVAVTKGRDLAEIERKVLRYGDFPLGENRIQEARAKIAAWP---EREWHFIGPLQRN 79
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + ++ +V + A L+ ++ + ++VN E QK G P++
Sbjct: 80 KVRYLRPF-RLVHSVDSLRLAEALAARAKREGYRPRILLEVNVAREPQKHGFDPDEVDAA 138
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---ECKLTKLSMGMTRDFELAIA 202
V RQ L + GLM + P +P+ ++ E+AR L +LSMGM+ DFE+A+
Sbjct: 139 VQAVRQLEPLELRGLMTMAPLAEDPEEVRWVFRELARMARHLGLPELSMGMSGDFEVAVE 198
Query: 203 SGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 199 EGATLVRVGRALF 211
>gi|319947485|ref|ZP_08021717.1| cell division protein YlmE [Streptococcus australis ATCC 700641]
gi|319746425|gb|EFV98686.1| cell division protein YlmE [Streptococcus australis ATCC 700641]
Length = 222
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ + A R D ++++AV+K V + + + G EN++ +
Sbjct: 1 MNLIENKERIFSQVAQAMETANRT-DQMNVIAVTKYVGIDQAKALVDTGVRHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV E+++ D + K A + + S +
Sbjct: 60 FLEKYQA-LKDEGLTWHLIGSLQRRKVKEVINFVDYFHALDSMKLAQEIQK---RASHPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
+IQVN E K G P + + L + GLM + P + +
Sbjct: 116 KCFIQVNISGEESKHGFAPEELDALLPEIEALDNLQIVGLMTMAPFEASQDELQAIFAAT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + T+LSMGM+RD+++AIA+GAT VRIG+ F
Sbjct: 176 HQLQKELQKKQLKNMPFTELSMGMSRDYDVAIANGATFVRIGTSFF 221
>gi|226226802|ref|YP_002760908.1| hypothetical protein GAU_1396 [Gemmatimonas aurantiaca T-27]
gi|226089993|dbj|BAH38438.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 224
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 13/227 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + + + +I + V+LVAV+K + A + G + ENK+Q
Sbjct: 1 MDHVRETVSEVRSRIAAARSRGG-HGQEVTLVAVTKTHGPDAVEAAYAAGVLDVGENKVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA+ K + V+ IG LQ NK + D++ ++ E+ A+ L E +K +R
Sbjct: 60 EAEGKMAQVAVP--VRWHLIGHLQRNKARSALRF-DLVHSMDSERLAAALHDEAVKAARS 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
L V +QVN E K G+ L V G+M + P + +
Sbjct: 117 LDVLLQVNVSGEDSKGGVALADVPALADRLHALGTLRVRGVMTMAPFEAAEATLRTVFAG 176
Query: 179 ------EIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ D+E+A+ GAT VR+G+ +FG R
Sbjct: 177 ARTARVALQQAGHPAEWLSMGMSGDYEIAVEEGATHVRLGTVLFGSR 223
>gi|254391600|ref|ZP_05006799.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294812127|ref|ZP_06770770.1| alanine racemase domain protein [Streptomyces clavuligerus ATCC
27064]
gi|326440716|ref|ZP_08215450.1| hypothetical protein SclaA2_06598 [Streptomyces clavuligerus ATCC
27064]
gi|197705286|gb|EDY51098.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294324726|gb|EFG06369.1| alanine racemase domain protein [Streptomyces clavuligerus ATCC
27064]
Length = 247
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+LV V+K + +R+ G AEN+ Q+A
Sbjct: 16 LAENLAKVEERIAAACAAAGRKREEVTLVVVTKTYPASDVRLLYELGVRNVAENRDQDAA 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+Q F+G LQ+NKV ++ DV+++V R K + LS ++ R +
Sbjct: 76 PKAAACADL-DLQWHFVGQLQTNKVRSVLGYSDVVQSVDRMKLVTALSSAAVRAGREVGC 134
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
IQV TG ++ G+ P T++ L +GLM + P G + F
Sbjct: 135 LIQVALDAETGARGERGGVAPGGTEELATAIEGSAGLRFDGLMTVAPLVGPYAGRQRAAF 194
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 195 DRLMEISADLRVGHPAANMVSAGMSTDLEEAVAAGATHVRVGTAVLGVRP 244
>gi|302335875|ref|YP_003801082.1| alanine racemase domain protein [Olsenella uli DSM 7084]
gi|301319715|gb|ADK68202.1| alanine racemase domain protein [Olsenella uli DSM 7084]
Length = 243
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++ + + + R D V L+ VSK V ++ +A G F EN+ QE K
Sbjct: 13 LRGRRAEILERLAAACVRSGRRADDVLLLGVSKTVGIDEVALAWEAGYRAFGENRPQELK 72
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K DV+ IG+LQ+NKV+ ++ +I +VS A +S + +
Sbjct: 73 RKLSACATSPKLADVRFDMIGNLQTNKVNMVIGNVSLIHSVSSTHLAEAISKRSVARGIR 132
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--L 177
V ++VN E KSG P+ + ++V GLM + P L
Sbjct: 133 SRVLLEVNVSGEESKSGFTPDGATTALDALLSLPGIDVRGLMTMAPRDDPDAARRTFSGL 192
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + L LS GM+ DFE A+ G+T VR+G +F
Sbjct: 193 RELRDALRGSHGLPLDVLSCGMSDDFESAVEEGSTLVRLGRTVF 236
>gi|309790060|ref|ZP_07684634.1| alanine racemase domain protein [Oscillochloris trichoides DG6]
gi|308227915|gb|EFO81569.1| alanine racemase domain protein [Oscillochloris trichoides DG6]
Length = 246
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/238 (32%), Positives = 109/238 (45%), Gaps = 21/238 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ +I +A A R ++LVAVSK +R A++ G F EN++QEA
Sbjct: 9 NIALRLEQIHARITAAAHRAARHPADITLVAVSKTHSPDHVRAAVAAGCYTFGENRVQEA 68
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + IG LQ NK V LFD+I++V + A L+ R +
Sbjct: 69 APKIAALQDLPRRPRWHMIGHLQRNKARLAVELFDLIQSVDSLRLAESLNQHAHDLGRRV 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ----------KYQLNVEGLMCIPPAMGNP 170
P+ +QVN E+ K G Q L V GLM IPP P
Sbjct: 129 PILLQVNVSGEVSKEGFALPGGIANHAAYAQLSTEIERILTLPNLEVRGLMTIPPLAEEP 188
Query: 171 ---KPHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F LL E+ + LSMGM+ DFE+AI+ AT +R+G IFGER
Sbjct: 189 EASRPYFRLLRELRTDLARRWPQANWRDLSMGMSDDFEVAISEEATIIRLGRAIFGER 246
>gi|300121038|emb|CBK21420.2| unnamed protein product [Blastocystis hominis]
Length = 618
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 27/243 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +++ + + +VAVSK ++ I+ G F EN +QE
Sbjct: 376 TVVTRFVALAKRVAEVSQQFNKTA--PRIVAVSKKKPAEAIQELYDYGHRDFGENYVQEL 433
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMIKQSR 118
K D++ IG LQS K ++++ VIE+V K A L+ + R
Sbjct: 434 LDKAEA--LPKDIRWHLIGHLQSGKCNQLIRKIPNLWVIESVDSIKLAEKLNSACLLAER 491
Query: 119 FLPVYIQVNTGYE------------IQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP 165
P+ + V +KSG +P + +L++ GLM +
Sbjct: 492 ADPLNVFVEVHTSGEETCALFVCLTSRKSGCLPEECLPLAEFILSNCPKLHLMGLMTVGK 551
Query: 166 AMGNPKPHFYLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+P+F L+ + E +LSMGM+ D+E A+ G+T++R+G+ IFG R
Sbjct: 552 LDAPPEPYFEQLNNLRADLLKKHPELGSLELSMGMSGDWETAVKMGSTNIRVGTTIFGAR 611
Query: 219 PCQ 221
Sbjct: 612 VYN 614
>gi|213510984|ref|NP_001135276.1| proline synthase co-transcribed bacterial homolog protein [Salmo
salar]
gi|209155828|gb|ACI34146.1| Proline synthetase co-transcribed bacterial homolog protein [Salmo
salar]
Length = 282
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 26/247 (10%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G LQ ++ +A + V LVAVSK + A G F EN
Sbjct: 6 MSEEVGKALQAVVDRVNQAAARRPKTLPVVPPRLVAVSKTKPPDMVIEAYRKGHRNFGEN 65
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+ E K + +++ FIG LQ N V++++ + ++ + + +
Sbjct: 66 YVNELVDKASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSVKLADKVNS 125
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA 166
++ L + +Q+NT E K G+ P++T V + L+ GLM I
Sbjct: 126 SWLRLRTASTQTLKIMVQINTSGEESKHGLPPDETVTTVKHILSKCSALHFSGLMTIGRY 185
Query: 167 ----MGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS I
Sbjct: 186 GYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTI 245
Query: 215 FGERPCQ 221
FG R
Sbjct: 246 FGNRDYP 252
>gi|281424386|ref|ZP_06255299.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris F0302]
gi|281401655|gb|EFB32486.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris F0302]
Length = 224
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 28/236 (11%)
Query: 1 MSL--GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M++ L V LVA+SK + I A + GQ IF E+
Sbjct: 1 MNVDVAKNLHEVL----------GNLPKDVRLVAISKYHPCEYIEAAYAEGQRIFGESHE 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K K D+Q FIG LQ+NKV I +IE V K ++ K +R
Sbjct: 51 QELKLKVEK--LPKDIQWHFIGHLQTNKVKYIAPYISMIEAVDSMKLLKEINKHANKHNR 108
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ V ++++ E K G+ P+ ++ R + + GLM + N
Sbjct: 109 IIKVLLELHIAEEETKYGLTPDACRELLAEGEWRTLDHVQICGLMMMASNTDNQDQIAGE 168
Query: 177 LSEIARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + S GM+ D++ AI G+T VR+G+ IFG R
Sbjct: 169 FETAARFFNEIKTHYFADSDAFKERSWGMSHDYKTAICHGSTMVRVGTTIFGPRVY 224
>gi|156501438|ref|YP_001427502.1| hypothetical protein FTA_0069 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954264|ref|ZP_06558885.1| hypothetical protein FtulhU_08547 [Francisella tularensis subsp.
holarctica URFT1]
gi|295312328|ref|ZP_06803115.1| hypothetical protein FtulhU_08534 [Francisella tularensis subsp.
holarctica URFT1]
gi|156252041|gb|ABU60547.1| hypothetical protein with alanine racemase N-terminal domain
[Francisella tularensis subsp. holarctica FTNF002-00]
Length = 222
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I+ V L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNID----------SKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + + + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIVKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|229816835|ref|ZP_04447117.1| hypothetical protein BIFANG_02083 [Bifidobacterium angulatum DSM
20098]
gi|229785851|gb|EEP21965.1| hypothetical protein BIFANG_02083 [Bifidobacterium angulatum DSM
20098]
Length = 286
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/259 (26%), Positives = 105/259 (40%), Gaps = 43/259 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++ + A R + SV L+A +K D +I A+ G + EN+ QE +
Sbjct: 25 IAGNVHAVLDRVAAAEQAAGRKEGSVRLLAATKTRDVGEIMAAIDAGIRMIGENRPQEVQ 84
Query: 63 KKWI-------------------------------PLRKEWDVQLRFIGSLQSNKVSEIV 91
K + IG LQSNK+ +I+
Sbjct: 85 VKAPGLLRLAAERGFALGVGGDATADASNAAASNTAAATNGMIPFHLIGQLQSNKIGKIL 144
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
D IE+V + A ++ + + + V ++VN E KSG + D
Sbjct: 145 PFVDTIESVDSIELAEKIARRAVMRGITVGVLLEVNESGEASKSGCPASHAIDLAQRIGN 204
Query: 152 KYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFEL 199
L ++GLM I + + F L + + T+LSMGMT D EL
Sbjct: 205 MGGLQLQGLMTIGAHVSDETTIRAGFAHLRKTRDQILASGAPGTEHCTELSMGMTGDMEL 264
Query: 200 AIASGATSVRIGSGIFGER 218
AIA GAT VR+G+GIFGER
Sbjct: 265 AIAEGATIVRVGTGIFGER 283
>gi|260584174|ref|ZP_05851922.1| pyridoxal phosphate enzyme, YggS family [Granulicatella elegans
ATCC 700633]
gi|260158800|gb|EEW93868.1| pyridoxal phosphate enzyme, YggS family [Granulicatella elegans
ATCC 700633]
Length = 219
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 11/222 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + + +I+ S R V + V+K +++I+ S G FAEN+++
Sbjct: 1 MTMIKSNAEQIVTRIQQSCDKVSRDVQEVCPIIVTKNRTNEEIQEVYSLGFRHFAENRVE 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ ++ + + D+ IG LQ KV +IV+ + R + +
Sbjct: 61 KLLER-QEVFPQEDIVWHLIGPLQKRKVKQIVNRIQYFHAIDRLSIMEEIEK---RLDSP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYL 176
L +++VN E K G + +Q ++++ G M + P + +F+
Sbjct: 117 LKCFLEVNVSGEESKHGFTKAGVFEAFEAAKQYEKIDIIGFMTMAPFEANEEEIRHYFHE 176
Query: 177 LSEIARECKLT---KLSMGMTRDFELAIASGATSVRIGSGIF 215
L E++++ + T KLSMGM++D+ +AI GA +RIG+ F
Sbjct: 177 LKEVSKKIQSTSTLKLSMGMSQDYPIAIEEGAHFIRIGTAWF 218
>gi|225704980|gb|ACO08336.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 26/247 (10%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G L ++ +A + +V LVAVSK + A G F EN
Sbjct: 6 MSEEVGKALHAVVDRVNQAAARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFGEN 65
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+ E K + +++ FIG LQ N V+ ++ + ++ + + +
Sbjct: 66 YVNELVDKASNPQILESCPEIEWHFIGHLQKNNVNRLLGVPNLFMVETVDSAKLADKVNS 125
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA 166
++ L + +Q+NT E K G+ P +T + V + L+ GLM I
Sbjct: 126 SWQRLRAASTQKLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSVLHFSGLMTIGRY 185
Query: 167 ----MGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS I
Sbjct: 186 GYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTI 245
Query: 215 FGERPCQ 221
FG R
Sbjct: 246 FGNRDYP 252
>gi|296453405|ref|YP_003660548.1| alanine racemase domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296182836|gb|ADG99717.1| alanine racemase domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length = 275
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 101/250 (40%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I S +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 23 IADGVHRVLDRIAESESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEIV 82
Query: 63 KKWI----------------------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K + IG LQ+NK+ +++ D IE+V
Sbjct: 83 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKIGKVLPAVDTIESV 142
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L+++GL
Sbjct: 143 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLHLQGL 202
Query: 161 MCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGATSV 208
M I + + + + + R T+LSMGMT D AI G+T V
Sbjct: 203 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIV 262
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 263 RVGTAIFGER 272
>gi|301306560|ref|ZP_07212622.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 124-1]
gi|300838178|gb|EFK65938.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 124-1]
Length = 220
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 35 KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVS 92
K + I A+ GQ F EN +QE K ++ ++ FIG LQSNK +
Sbjct: 22 KQKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAE 81
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
FD T+ R + A+ L+ + + L V IQ+N E KSGI + + +
Sbjct: 82 HFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAEL 141
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFELAIASG 204
+L + GLM IP F + ++A R + LS+GM+ D E AIA+G
Sbjct: 142 PRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAG 201
Query: 205 ATSVRIGSGIFGERPCQ 221
+T VRIG+ IFG R
Sbjct: 202 STMVRIGTAIFGARDYS 218
>gi|19553353|ref|NP_601355.1| TIM-barrel fold family protein [Corynebacterium glutamicum ATCC
13032]
gi|62390992|ref|YP_226394.1| pyridoxal-5'-phosphate dependent enzyme [Corynebacterium glutamicum
ATCC 13032]
gi|41326331|emb|CAF20493.1| pyridoxal-5'-phosphate dependent enzyme [Corynebacterium glutamicum
ATCC 13032]
Length = 234
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 15/226 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+LQ + +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K
Sbjct: 10 RLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKA 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIKQSR 118
+ D+ IG +QS K + I + +V EK A L + S
Sbjct: 70 LE---LPDMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSD 126
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
LP +IQ++ + + G +Q L EGLMC+PP P+ F
Sbjct: 127 ELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEKAFSQAR 186
Query: 179 EIAREC--KLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 187 DVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 232
>gi|156836871|ref|XP_001642476.1| hypothetical protein Kpol_264p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156113010|gb|EDO14618.1| hypothetical protein Kpol_264p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 270
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/246 (25%), Positives = 102/246 (41%), Gaps = 27/246 (10%)
Query: 1 MS----LGNKLQVFKQKIENSAILAK-RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
M+ L + +I ++ KD V L+AVSK+ + +++ G F E
Sbjct: 26 MTRKDELVTNYESILAQIRDAEAKYGINNKDQVMLLAVSKLKPASDVQLLYDHGIRHFGE 85
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-----ETVSREKTASLLS 110
N +QE +K I D+ FIG LQSNK ++ + ++ +++ + +
Sbjct: 86 NYVQELIEKSIA--LPKDINWHFIGGLQSNKCKDLAKIPNLYAVETVDSLKKANKLNEAR 143
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKS---GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
+ S + +IQ+NT E QKS +N+ GLM I
Sbjct: 144 SKYNPDSPPINCFIQINTSNEEQKSGLSDESEIFEIIEFFFNSNTKNINLIGLMTIGSWE 203
Query: 168 GNPKPHFYLLSEIAREC-----KLT-------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ ++ K+ KLSMGM+ DF+ AI G + VR+G+ IF
Sbjct: 204 TSHNNDPDYINLDFENLVNWKSKIDSKYNTNLKLSMGMSADFKQAIKQGTSEVRVGTDIF 263
Query: 216 GERPCQ 221
G RP +
Sbjct: 264 GVRPAK 269
>gi|159038975|ref|YP_001538228.1| alanine racemase domain-containing protein [Salinispora arenicola
CNS-205]
gi|157917810|gb|ABV99237.1| alanine racemase domain protein [Salinispora arenicola CNS-205]
Length = 248
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + ++ ++ A R VS+VAV+K + + + G EN+ QEA
Sbjct: 16 LAAGLTRVRTRVADACAAAGRDLGEVSMVAVTKTYPASDVIALVGLGATEVGENRDQEAS 75
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQSRFL 120
K + + FIG LQ NK +V DV+++V + A L + R L
Sbjct: 76 AKATEVAAAGVTPRWHFIGQLQRNKARSVVRYADVVQSVDSVRLARALDRASATVRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL------NVEGLMCIPPAMGNPKPHF 174
V++QV+ + G +P L + + GLM + P P+ F
Sbjct: 136 EVFVQVSIDGAGARGGALPGSADPEAGLEPVAEMVAGMDGLRLAGLMAVAPLGWEPERAF 195
Query: 175 YLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+A R + T LS GM+ D E+AI GAT VR+GS + G R
Sbjct: 196 ARLAEVAAGFRVRHPQATLLSAGMSGDLEVAIRYGATHVRVGSALLGMR 244
>gi|46190917|ref|ZP_00120889.2| COG0325: Predicted enzyme with a TIM-barrel fold [Bifidobacterium
longum DJO10A]
gi|189440084|ref|YP_001955165.1| hypothetical protein BLD_1222 [Bifidobacterium longum DJO10A]
gi|189428519|gb|ACD98667.1| Hypothetical TIM-barrel fold containing enzyme [Bifidobacterium
longum DJO10A]
Length = 271
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 19 ITDGVHRVLDRITEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEII 78
Query: 63 KKWI----------------------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K + IG LQ+NK+ +++ D IE+V
Sbjct: 79 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKIGKVLPAVDTIESV 138
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L ++GL
Sbjct: 139 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGL 198
Query: 161 MCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGATSV 208
M I + + + + + R T+LSMGMT D AI G+T V
Sbjct: 199 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIV 258
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 259 RVGTAIFGER 268
>gi|225703686|gb|ACO07689.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 26/247 (10%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G L ++ +A + +V LVAVSK + A G F EN
Sbjct: 6 MSEEVGKALHAVVDRVNQAAARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFGEN 65
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+ E K + +++ FIG LQ N V++++ + ++ + + +
Sbjct: 66 YVNELVDKASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSAKLADKVNS 125
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA 166
++ L + +Q+NT E K G+ P +T + V + L+ GLM I
Sbjct: 126 SWQRLRAASTQKLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSALHFSGLMTIGRY 185
Query: 167 ----MGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS I
Sbjct: 186 GYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTI 245
Query: 215 FGERPCQ 221
FG R
Sbjct: 246 FGNRDYP 252
>gi|89255507|ref|YP_512868.1| hypothetical protein FTL_0060 [Francisella tularensis subsp.
holarctica LVS]
gi|167009352|ref|ZP_02274283.1| hypothetical protein Ftulh_01145 [Francisella tularensis subsp.
holarctica FSC200]
gi|167010277|ref|ZP_02275208.1| hypothetical protein Ftulh_06040 [Francisella tularensis subsp.
holarctica FSC200]
gi|254366933|ref|ZP_04982970.1| hypothetical protein FTHG_00094 [Francisella tularensis subsp.
holarctica 257]
gi|89143338|emb|CAJ78501.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|134252760|gb|EBA51854.1| hypothetical protein FTHG_00094 [Francisella tularensis subsp.
holarctica 257]
Length = 222
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I+ V L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNID----------SKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|227488535|ref|ZP_03918851.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091429|gb|EEI26741.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 233
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + A R D V L+ V+K + + + S G EN+ QEAK
Sbjct: 7 IAAGLQRVRQRIAEAKAAAGRT-DEVRLLPVTKFHPASDVEILHSLGIEAVGENRDQEAK 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI-------K 115
KK + +G +Q+ K + + +++V L M +
Sbjct: 66 KKAAEFPS---MAFHMLGQIQTKKANSVARWASAVQSVDSLTLVQALDRGMQLALDRGDR 122
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L VY+Q++ + + G++ V L + GLMC+PP + F
Sbjct: 123 TTETLDVYVQLSLDGDESRGGVIAADVPFLVEAIEGSTHLRLVGLMCVPPVASDADEAFA 182
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ ++ + S GM+ D E+AI +G+T VR+G+ I G R
Sbjct: 183 TALDVKQDLDARAGHPLEFSAGMSADLEVAIKNGSTLVRVGTDILGPR 230
>gi|115314027|ref|YP_762750.1| hypothetical protein FTH_0059 [Francisella tularensis subsp.
holarctica OSU18]
gi|115128926|gb|ABI82113.1| possible alanine racemase [Francisella tularensis subsp. holarctica
OSU18]
Length = 222
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I+ V L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNID----------SKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|254368471|ref|ZP_04984488.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157121365|gb|EDO65566.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 222
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I+ V L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNID----------SKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|269976640|ref|ZP_06183619.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris 28-1]
gi|307700576|ref|ZP_07637608.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris
FB024-16]
gi|269935167|gb|EEZ91722.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris 28-1]
gi|307614221|gb|EFN93458.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris
FB024-16]
Length = 281
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 53/271 (19%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +L ++++ +A + R V ++ VSK I+ A++ G F EN+ Q
Sbjct: 1 MTGFQERLVGIQERVAAAARASGREPRDVRILPVSKTHPISMIQAAMAAGVREFGENRPQ 60
Query: 60 EAKKKWIP------------------------------------------LRKEWDVQLR 77
+ K K +
Sbjct: 61 DLAAKAQELGANLRRSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWV 120
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG+LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+
Sbjct: 121 MIGNLQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNVSGETVKHGV 180
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLSEIAR-----ECKLT 187
P DF L + G M + F L I + +
Sbjct: 181 EPGVALDFAGRVAALPGLRLTGFMGVAAPLSVVGEAGVHEAFARLRAIRDVAVVSIPEAS 240
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE+AIA G+T VR+GSG+FG+R
Sbjct: 241 GLSMGMSGDFEIAIAEGSTCVRLGSGLFGQR 271
>gi|169351607|ref|ZP_02868545.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
gi|169291829|gb|EDS73962.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
Length = 220
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 11/199 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+A +K V +I + G + F EN++Q +K+ + + IG+LQ N
Sbjct: 23 NDVKLIAATKYVGIDEINKLENLGVMYFGENRVQAFLEKYQKYNG--NCKFHMIGTLQPN 80
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I+ D+I +V + + K + + V IQVN E K G + ++
Sbjct: 81 KVKYIIDKVDLIHSVDSYSLIKEIEKQANKHNLVMKVLIQVNISKEESKHGFKVEEIEEV 140
Query: 146 VILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARECK-------LTKLSMGMTRD 196
+ + V+GLM + P + + +F L ++ + K LT+LSMGM+ D
Sbjct: 141 FDTLKNYPHIEVKGLMMMAPNIEAEKTREYFKLTQDLFNQLKIKYPEYSLTELSMGMSND 200
Query: 197 FELAIASGATSVRIGSGIF 215
+++A+ GAT VRIGS +F
Sbjct: 201 YKIALEYGATMVRIGSSLF 219
>gi|297568540|ref|YP_003689884.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296924455|gb|ADH85265.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 250
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 91/249 (36%), Positives = 126/249 (50%), Gaps = 31/249 (12%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +G L K +I +A + R SV LVAVSK V++++I A++ GQ +F EN LQ
Sbjct: 1 MTDIGANLAAVKARIAAAARRSGRDPASVRLVAVSKRVEAERIVTAVAAGQRLFGENYLQ 60
Query: 60 EAKKKWI-----------------PLRKEWDVQLRFIGSLQSNKVSEI-VSLFDVIETVS 101
EA+ K + +V FIG LQSNK + F ++ET+
Sbjct: 61 EAQAKISRVNELLAGPEAGPEASLDPTGKAEVSWHFIGHLQSNKAKAAATTDFTMVETID 120
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
R K A L R LPV +QVN G E QK+G+MP Q + + + L V GLM
Sbjct: 121 RLKLARALDRHAAAAGRLLPVLVQVNVGGEAQKAGVMPEQAPELLRSLAELPALRVMGLM 180
Query: 162 CIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVR 209
+PP +P +PHF L ++A E LSMGM+ DFE+A+ GA VR
Sbjct: 181 TMPPMAAHPEESRPHFARLRQLAEEFARQGLLGAHGSPLLSMGMSADFEVAVEEGANLVR 240
Query: 210 IGSGIFGER 218
+G+ IFG R
Sbjct: 241 VGTAIFGPR 249
>gi|33865194|ref|NP_896753.1| hypothetical protein SYNW0660 [Synechococcus sp. WH 8102]
gi|33638878|emb|CAE07175.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 220
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 4/198 (2%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ L+AVSK + IR GQ F E++LQEA K L +Q FIG LQS
Sbjct: 17 PATAQLLAVSKGHPAAVIRELAGSGQRAFGESRLQEALPKQEQLADLA-LQWHFIGRLQS 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F VI +V A +S ++ ++ V +QV + K G + ++
Sbjct: 76 NKVRSVVRAFPVIHSVDSLPLAQRVSRIAGEEEQWPEVLLQVKLRPDTNKGGFLRDELLS 135
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECKLTKLSMGMTRDFELAI 201
+ V GLM + P + L E+A + +L + SMGM+ D++ A
Sbjct: 136 AWTELAALPSMTVIGLMTMAPMGCDADDRRALFQECRELADQLELRECSMGMSGDWQDAA 195
Query: 202 ASGATSVRIGSGIFGERP 219
A+G+T +R+GS +FG RP
Sbjct: 196 AAGSTWLRLGSVLFGPRP 213
>gi|332295641|ref|YP_004437564.1| protein of unknown function UPF0001 [Thermodesulfobium narugense
DSM 14796]
gi|332178744|gb|AEE14433.1| protein of unknown function UPF0001 [Thermodesulfobium narugense
DSM 14796]
Length = 222
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 12/221 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +Q K++++ + AKR D V ++ V+K ++ IR + G +F EN+++EAK
Sbjct: 1 MQENVQKVKERVQKAKEAAKRK-DEVFILPVTKTKSTEIIRALIEMGFNVFGENRVREAK 59
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K +V+ IG LQ+NKV + + +F I++V K + ++ K+ +PV
Sbjct: 60 EKIKE---LSNVKFEMIGHLQTNKVKDALDIFTRIQSVDSLKLLTEINERAAKKKIVMPV 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
+++N E QK G +P + + + +N+EGLM + + S +
Sbjct: 117 LVEINISGESQKYGFLPGEVMNLFRVTSSLRFVNIEGLMGMASLTNDTDKIRKEFSTLRI 176
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
A L LSMGMT DFE+AI G+ VRIG F
Sbjct: 177 LYERLNAEGYNLNVLSMGMTDDFEVAIMEGSNMVRIGRAFF 217
>gi|227545702|ref|ZP_03975751.1| possible TIM-barrel fold protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213818|gb|EEI81657.1| possible TIM-barrel fold protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 292
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 40 ITDGVHRVLDRIAEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEII 99
Query: 63 KKWI----------------------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K + IG LQ+NK+S+++ + D IE+V
Sbjct: 100 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKISKVLPVVDTIESV 159
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L ++GL
Sbjct: 160 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGL 219
Query: 161 MCIPPAMGNPKPHFYLLSEIARE------------CKLTKLSMGMTRDFELAIASGATSV 208
M I + + + + + R T+LSMGMT D AI G+T V
Sbjct: 220 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIV 279
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 280 RVGTAIFGER 289
>gi|110639046|ref|YP_679255.1| hypothetical protein CHU_2661 [Cytophaga hutchinsonii ATCC 33406]
gi|110281727|gb|ABG59913.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 220
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 16/208 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ +L+AV+K + ++ A S G IF ENK+QE K D+Q IG LQS
Sbjct: 15 PYNTTLIAVTKTHPVEVLQQAYSSGLRIFGENKVQELISKAE--VLPKDIQWHLIGHLQS 72
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +I +V K ++ E K R + +QV E K G+ + +
Sbjct: 73 NKVKYIAPFIYMIHSVDSFKLLQEINKEAKKNKRVIACLLQVYIANEDTKFGLDTQELTN 132
Query: 145 F--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------------RECKLTKLS 190
Q + ++GLM + + + + + ++S
Sbjct: 133 LLLHPELEQLENIQIQGLMGMATNTNDQEQVRKEFRYLKNLFKSLAETIEKKNVAWKEIS 192
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+ LA+ G+T VRIGS IFG R
Sbjct: 193 MGMTSDYRLAVEEGSTMVRIGSAIFGNR 220
>gi|237749781|ref|ZP_04580261.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229374646|gb|EEO25037.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 222
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + IE R DS+ L+AVSK D +I+ A SCGQ+ F ENK+Q+
Sbjct: 2 ICENLAKTLESIEKIKERYNRK-DSIKLIAVSKYSDIDEIQQAFSCGQIAFGENKVQDLM 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQSRFLP 121
K +++ FIG+LQ NK++ ++ + + + + +++ +
Sbjct: 61 AKSRS-LSTHNIEWHFIGTLQENKINMLIQIKPALLHSLHSLKLAHALQKRLMREDYKMK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM------GNPKPHF 174
+QVN+ E KSG + + + GLMC+
Sbjct: 120 ALLQVNSANEDSKSGFSLESAFSSYLEILETCPNIELNGLMCMGANSDDKALIEKGFLQT 179
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E + LSMGM+ D+E+AIA G+ +RIGS IF
Sbjct: 180 QNLYERLKPYNANILSMGMSSDYEIAIACGSNHLRIGSSIF 220
>gi|22536659|ref|NP_687510.1| ylmE protein [Streptococcus agalactiae 2603V/R]
gi|22533498|gb|AAM99382.1|AE014213_21 ylmE protein, putative [Streptococcus agalactiae 2603V/R]
Length = 224
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAHESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV ++++ D + K A+ + K +
Sbjct: 62 FLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKHAQKL---I 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|32267181|ref|NP_861213.1| hypothetical protein HH1682 [Helicobacter hepaticus ATCC 51449]
gi|32263234|gb|AAP78279.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 222
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/220 (30%), Positives = 105/220 (47%), Gaps = 10/220 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++IE + + P +SLVAVSK +++IR CGQ F ENK+Q+ +
Sbjct: 2 LALNLERILRRIERARLAYS-PHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLR 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG+LQ NK++ ++SL + S + L+L+ + +
Sbjct: 61 AKIESLDDL-PLEWHFIGNLQENKINTLLSLNPTL-LHSLDSIKLALALQKRLGEQKIRA 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QVN E KSG+ K+ + +EG+M I +
Sbjct: 119 LLQVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSIGAHSDDRALIERSFRLTR 178
Query: 179 EIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 179 DVFDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 218
>gi|254584384|ref|XP_002497760.1| ZYRO0F12870p [Zygosaccharomyces rouxii]
gi|238940653|emb|CAR28827.1| ZYRO0F12870p [Zygosaccharomyces rouxii]
Length = 274
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 20/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K + + A + V L+AVSK+ + I++ G F EN +QE
Sbjct: 36 LIARYNEVKSSCDAACEKAGVNR-EVLLLAVSKLKPASDIQILYDHGVRHFGENYVQELI 94
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ D+Q FIG LQ+NK ++ V+ +ET+ K A L+ ++ + +
Sbjct: 95 E--KSKLLPQDIQWHFIGGLQTNKCKDLAKVTNIRYVETIDSLKKAKKLNETRVEGAPVI 152
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPAM----GNPKPH 173
IQ+NT E QKSG+ + ++ + +EGL+ I +P
Sbjct: 153 LCNIQINTSDESQKSGLSNEKEIFELVEFFLSPESKNVQLEGLLTIGSWDSSHSDDPNVD 212
Query: 174 FYLLSEIAR-ECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
S +A + K+ + LSMGM+ DF+ A+ G++ +RIG+ IFG RP +
Sbjct: 213 NADFSTLAHWKSKIDEKFGINLKLSMGMSADFKQAVRQGSSEIRIGTDIFGTRPAK 268
>gi|182684607|ref|YP_001836354.1| ylmE protein [Streptococcus pneumoniae CGSP14]
gi|225857281|ref|YP_002738792.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
P1031]
gi|303258594|ref|ZP_07344574.1| ylmE protein [Streptococcus pneumoniae SP-BS293]
gi|303262681|ref|ZP_07348621.1| ylmE protein [Streptococcus pneumoniae SP14-BS292]
gi|303263621|ref|ZP_07349543.1| ylmE protein [Streptococcus pneumoniae BS397]
gi|303266382|ref|ZP_07352271.1| ylmE protein [Streptococcus pneumoniae BS457]
gi|303268255|ref|ZP_07354053.1| ylmE protein [Streptococcus pneumoniae BS458]
gi|182629941|gb|ACB90889.1| ylmE protein [Streptococcus pneumoniae CGSP14]
gi|225725473|gb|ACO21325.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
P1031]
gi|301802367|emb|CBW35121.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
gi|302636237|gb|EFL66732.1| ylmE protein [Streptococcus pneumoniae SP14-BS292]
gi|302640095|gb|EFL70550.1| ylmE protein [Streptococcus pneumoniae SP-BS293]
gi|302642206|gb|EFL72555.1| ylmE protein [Streptococcus pneumoniae BS458]
gi|302644082|gb|EFL74340.1| ylmE protein [Streptococcus pneumoniae BS457]
gi|302646659|gb|EFL76884.1| ylmE protein [Streptococcus pneumoniae BS397]
Length = 223
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVGEASLSAHRESSSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|324997732|ref|ZP_08118844.1| pyridoxal phosphate enzyme, YggS family protein [Pseudonocardia sp.
P1]
Length = 247
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +++++ + A R +VSL+AV+K V ++ + + G FAEN+ QEA
Sbjct: 13 LKERLGAVRERLDAACRAAGRDPAAVSLLAVTKTVPARDVADLIDLGLAAFAENRAQEAG 72
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TASLLSLEM 113
K + R + D + F+G LQ NKV ++ IE+V + + +
Sbjct: 73 TKVADVARLRPDADARWHFVGGLQRNKVRAVLPWVTRIESVDSPRLARAIDKEVAKARDR 132
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
++S LPV +Q + + + G+ + + L + L + GLM + P +G P+P
Sbjct: 133 GERSGPLPVLVQYSVDGDPDRGGVPDDGLDELTDLVTELPGLELGGLMAVAPLVGEPEPA 192
Query: 173 ----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R +LS GM+ D E A+ G+T VR+G+ + GER
Sbjct: 193 FATIAAAARRTRERHPGAVELSAGMSADLETAVDHGSTVVRVGTALVGER 242
>gi|253745137|gb|EET01241.1| PLP dependent enzymes class III [Giardia intestinalis ATCC 50581]
Length = 220
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + L+ K +I N+ L+AVSK + A + GQ +F EN +QE
Sbjct: 2 LSVADALKAIKAEIGNA-----------KLIAVSKTKPIGAVLEAYAAGQRLFGENYVQE 50
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSR 118
K + D++ FIG LQ+NKV ++ + + I+TV ++ A L+
Sbjct: 51 LIGKTEATQDVASDIEWHFIGHLQTNKVRDVALIPNCVIQTVDSDRLARRLNDARPDNLD 110
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+NT E KSG + +L + GLM I P
Sbjct: 111 LLRVMIQINTSGESTKSGCTAEDAIELAQTIMTLPRLRLIGLMTIGA----PGSPEASFR 166
Query: 179 EIARECKLTK----------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LSMGM+ D++LA+ GA VRIG+ IFGER
Sbjct: 167 ALVDARNAIEQVVKPEERLKLSMGMSTDYQLAVQMGADYVRIGTAIFGERVYS 219
>gi|168575146|ref|ZP_02721109.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
MLV-016]
gi|183578772|gb|EDT99300.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
MLV-016]
Length = 223
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA- 175
Query: 181 ARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
A++ + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 AQDLQIEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|76788184|ref|YP_329214.1| hypothetical protein SAK_0582 [Streptococcus agalactiae A909]
gi|76798290|ref|ZP_00780537.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
18RS21]
gi|77405597|ref|ZP_00782687.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
H36B]
gi|76563241|gb|ABA45825.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
A909]
gi|76586362|gb|EAO62873.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
18RS21]
gi|77175819|gb|EAO78598.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
H36B]
Length = 224
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAHESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ + IGSLQ KV ++++ D + K A+ + + + +
Sbjct: 62 FLEKYQA-LKDEKLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQK---RAQKPI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|167626952|ref|YP_001677452.1| hypothetical protein Fphi_0729 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596953|gb|ABZ86951.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 222
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 24/229 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I++ A L+AVSK KI S GQ+ F EN QE +
Sbjct: 7 IQSSYSSIIKNIDSKA----------RLLAVSKYQSIDKIEYLASLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K +++ FIGSLQS K+ IV D I++V + + +S I +++++ V
Sbjct: 57 QKAQQ---LPNLKWHFIGSLQSRKIKHIVKYADSIQSVEKIEHLEKISKAAINENKYIDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N ++ KSG Q D + ++ L V GLMCIP +P+ F +
Sbjct: 114 FLQINIDDDVSKSGFKSTQLDDVIEAIVKAKKFSNLKVVGLMCIPAKSDSPEKSFAKMKV 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A E KL++LSMGM+ D++LAI G+T VRIGS +FG R
Sbjct: 174 FFDTINASLAYELKLSRLSMGMSADYKLAIQYGSTDVRIGSSLFGIREA 222
>gi|123455783|ref|XP_001315632.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121898315|gb|EAY03409.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 227
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 103/234 (44%), Gaps = 23/234 (9%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+ + + + ++N + A LV VSK + ++ G IF EN
Sbjct: 1 MTESHVAENYKHINEIVKNLSSTAH-------LVCVSKTKPIEDLKQVFEAGGRIFGENY 53
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS-REKTASLLSLEMIKQ 116
+ E K D Q IG LQSNKV+++ + +++ S K + +
Sbjct: 54 VDEIITKGPQ---LPDAQFHMIGHLQSNKVAKLCKVENLVMIQSIDSKELATKVDKQYVN 110
Query: 117 SRFLPVYIQVNTGYEIQKSGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ L V IQ+NT E QKSGI ++ + + L G+M I +
Sbjct: 111 RKPLEVLIQINTSAEPQKSGIANGAEASELAKFIVENCHNLKFRGVMTIGETGEASRDFA 170
Query: 175 YLLSE---IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+ E IA E + +LSMGM+ D+ELA+ GAT VR+GS IFG R
Sbjct: 171 CLVEERRRIAGELGMKPEDLELSMGMSADYELALKMGATFVRVGSSIFGPRIYP 224
>gi|125624831|ref|YP_001033314.1| hypothetical protein llmg_2059 [Lactococcus lactis subsp. cremoris
MG1363]
gi|4138105|emb|CAA75617.1| hypothetical protein [Lactococcus lactis subsp. cremoris MG1363]
gi|124493639|emb|CAL98626.1| Hypothetical UPF0001 protein PM0112 [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071629|gb|ADJ61029.1| hypothetical protein LLNZ_10600 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 225
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K V++ R G AEN+ +
Sbjct: 1 MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV ++++ D + K A +S + +
Sbjct: 61 FLEKYEA-LKDCEITWHLIGNLQRRKVKKVINYVDYFHALDSLKLAQEISK---RAEHLI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+I+VN E K G ++ K+ + + + + GLM + P + +
Sbjct: 117 KCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 181 AR------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
E L +LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KELQVEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|320581837|gb|EFW96056.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia angusta DL-1]
Length = 236
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 23/233 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q+++ A LV VSK + I+ G F EN +QE
Sbjct: 13 LVSNANKIAQRVKELNDKA-------RLVCVSKFKPASDIKALYDAGYRHFGENYVQELL 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--- 119
+ D+Q FIG LQ+NK ++ D + V T +++
Sbjct: 66 E--KAKVLPKDIQWHFIGGLQTNKTKDLAKNIDNLYAVETIDTEKKARKLNDVRAQCGKP 123
Query: 120 -LPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMG----NPKPH 173
+ VYIQVNT E QKSGI P + + I+ + +LN+EGLM I + +
Sbjct: 124 IINVYIQVNTSGEEQKSGIAPEECLQLAKIIVNECPKLNLEGLMTIGSIVQSISSDENQD 183
Query: 174 FYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E++++ + +LSMGM+ DFE A+ G++SVR+GS IFG RP +
Sbjct: 184 FKTLVEVSKKLEAELGRKLELSMGMSNDFEEALRQGSSSVRVGSNIFGSRPTK 236
>gi|70726728|ref|YP_253642.1| hypothetical protein SH1727 [Staphylococcus haemolyticus JCSC1435]
gi|68447452|dbj|BAE05036.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 222
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ + +I++ ++ +++AV+K V + + A G F EN+L+
Sbjct: 1 MDVKQNLRNIESEIQSHFKNSE-ASTLPNVIAVTKYVTIDRAKEAYDVGLRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV + FIGSLQS KV E+++ D + + R A ++ + +
Sbjct: 60 FLEKKSA--LPNDVTMHFIGSLQSRKVKEVINEIDYLHALDRLSLAKEINK---RADHEI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN E K GI N+ F+ +Q ++ + GLM + P + L ++
Sbjct: 115 ACFIQVNVSGEESKHGIALNEVNHFIEQIQQYDKIKIVGLMTMAPYTEDTAYIRQLFKQL 174
Query: 181 A------RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ L LSMGM+ D+ +A+ GA+ +RIG+ + GE
Sbjct: 175 RVKRDEIKDLNLDYAPCHYLSMGMSNDYAIAVEEGASFIRIGTKLVGE 222
>gi|325068581|ref|ZP_08127254.1| alanine racemase domain protein [Actinomyces oris K20]
Length = 267
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 10/212 (4%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
A R + L+ VSK V +++R A + G ENK+QEA++K + +
Sbjct: 45 KRAGRDAADIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRK-SENLADLGISWSV 103
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK + + D + + + A L + R L VY+QVN+ E K G+
Sbjct: 104 IGHLQTNKAKNVAAFADEFQALDSLRLAEALDRRLQAAGRGLDVYVQVNSSGEPSKFGLE 163
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-CKLTK-----L 189
P+ DF+ L V GLM + + + F ++ + + L
Sbjct: 164 PDDVADFLAALPAYSSLRVRGLMTLAAHTDDAARVRECFSIMRRLRDAALQAGTVGDGLL 223
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGM+ DFE AI G+T VR+G IFG R
Sbjct: 224 SMGMSGDFEAAIEGGSTCVRVGQAIFGARATP 255
>gi|288928406|ref|ZP_06422253.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
317 str. F0108]
gi|288331240|gb|EFC69824.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
317 str. F0108]
Length = 220
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVAVSK ++++ A GQ IF E++ QE +K D+ FIG LQ+
Sbjct: 13 PPHVRLVAVSKFHPNEELMAAYEQGQRIFGESQEQELSRKAAE--LPKDIAWHFIGHLQT 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I D+IE V + ++ + K R + V ++++ E K G P+ ++
Sbjct: 71 NKVKYIAPFIDMIEAVDSLRLLREINKQAEKCGRVIDVLLELHVAQEATKYGFTPDACRE 130
Query: 145 F--VILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEI-----ARECKLTKLS 190
R+ + + GLM + + N + ++ EI A + + S
Sbjct: 131 MLASGEWRKLSHIRICGLMTMASNVDNEEQIRAEMTTAWHFFDEIKSQYFAHDDAFKERS 190
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
GM+ D+ +A+ G+T VR+G+ IFGER
Sbjct: 191 WGMSHDYPIALQCGSTMVRVGTNIFGERQY 220
>gi|300727951|ref|ZP_07061329.1| pyridoxal phosphate enzyme, YggS family [Prevotella bryantii B14]
gi|299774793|gb|EFI71407.1| pyridoxal phosphate enzyme, YggS family [Prevotella bryantii B14]
Length = 224
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + V LVA+SK ++ I A GQ IF E+ QE
Sbjct: 4 DVAKNLHEVLDNL----------PQDVRLVAISKYHPNEYIEAAYQEGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK D++ FIG LQ+NKV I +IE V K ++ + K R +
Sbjct: 54 AKKVES--LPKDIEWHFIGHLQTNKVKYIAPYISMIEAVDSFKLLKEINKQAAKHDRIIN 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G+ + ++ + K + + GLM + + +
Sbjct: 112 VLLELHIAEEETKYGLTLDDCRNLLAEGTWKELEHVQICGLMMMASNTDDTQLIEKEFDI 171
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ E K + S GM+ D++LAI +T VR+G+ IFG R
Sbjct: 172 AAKFFDEIKQKYFTNDNHFCERSWGMSNDYQLAIKHQSTMVRVGTFIFGPRIY 224
>gi|326577686|gb|EGE27562.1| putative alanine racemase [Moraxella catarrhalis O35E]
Length = 236
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILA------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L ++ KQ + + A RP L+AVSK I+ GQ F EN
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPA---KLIAVSKTKPVAMIQTLFHQGQQDFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
LQEA K L + + +IGS+Q NK +I FD + T+ R + + E
Sbjct: 69 YLQEALGKISQLSQL-PIIWHYIGSIQRNKTRDIAKHFDWVHTLER-EIIAQRLNEQRAG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPK 171
+ L V IQ+N E KSG P + + LN+ G+M IP K
Sbjct: 127 MQPLNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTK 186
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F ++ +SMGM+ D A+ G+T VR+G+ IFGER
Sbjct: 187 VLFDAMARRFDLPNWDTISMGMSGDMTQAVVHGSTMVRVGTAIFGERD 234
>gi|251772207|gb|EES52777.1| conserved protein of unknown function [Leptospirillum
ferrodiazotrophum]
Length = 232
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 91/228 (39%), Gaps = 14/228 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ + I + + R D LV V+K + +R + G AEN+ +
Sbjct: 1 MSTIAENVEAIRADIREVSQASGRS-DLPRLVGVTKTRSLEDVRALILAGVDHLAENRWE 59
Query: 60 EAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
++ + + FIG +Q + IE++ + LS ++
Sbjct: 60 SWHERLLAFPGNLWPSIFWHFIGPIQGRALKRFYRPLFCIESLDNLSHGTALSRLALESG 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------ 171
V ++VN ++G++P + L +EGLM + P G+ K
Sbjct: 120 APQSVLLEVNVCRAPGRTGVLPENLFPEIEALAALPGLRLEGLMVMGPIPGDAKSPSSSE 179
Query: 172 ---PHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E R + LSMGM+ D+ AI G+T VRIG +F
Sbjct: 180 VFGEGNALFQEARRLIPSMGTLSMGMSEDYREAIRWGSTEVRIGRSLF 227
>gi|292669562|ref|ZP_06602988.1| cell division protein YlmE [Selenomonas noxia ATCC 43541]
gi|292648771|gb|EFF66743.1| cell division protein YlmE [Selenomonas noxia ATCC 43541]
Length = 239
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 19/237 (8%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS + +LQ + +I + R V L+AV+K + ++ A+ G +
Sbjct: 1 MSNDAMIYERLQSVRAEIAAARARRTRVSAETPVELIAVTKNHPVEAMQKAIDAGVMNIG 60
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QEA V+ IG LQ+NK + V FD+I +V + A +
Sbjct: 61 ENRVQEALS--KAGTLARAVKWHLIGHLQTNKAKQAVRQFDLIHSVDSVRLAQEIDKAAE 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH- 173
+ + V +QVN E KSG+ + + + + ++G MCI P N +
Sbjct: 119 RFGKVQNVLVQVNLAREESKSGVYREDLDELLAAIDELCSVRLQGFMCIAPNYENVEQCR 178
Query: 174 --FYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F + E+ R+ K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 179 PLFREMYELFRQMKAAGPRTADIRYLSMGMTHDYGIAVEEGANLVRVGTAIFGARQY 235
>gi|78213542|ref|YP_382321.1| hypothetical protein Syncc9605_2025 [Synechococcus sp. CC9605]
gi|78198001|gb|ABB35766.1| Protein of unknown function UPF0001 [Synechococcus sp. CC9605]
Length = 220
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A+ A RP S L+AVSK + +R GQ F E+++QEA K L +++
Sbjct: 11 ALQAVRPSSS-RLLAVSKGHPAASVRCVAELGQCDFGESRVQEALPKQEALIDL-NLRWH 68
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQSNKV +V FDVI +V A +S +++ R V +QV + K G+
Sbjct: 69 FIGRLQSNKVRPVVKAFDVIHSVDSLSLAERVSRIALEEDRRPEVLLQVKFRPDPSKGGL 128
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECKLTKLSMGMT 194
+ + L + GLM + P + L +A + L + SMGM+
Sbjct: 129 SAEELGAIWSDLQALPGLRISGLMTMAPLDMAAEQRKALFSDCRALADQLALAECSMGMS 188
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D++ A +G+T +RIGS +FG R T
Sbjct: 189 TDWKEAAEAGSTWLRIGSALFGPRLVST 216
>gi|316964562|gb|EFV49608.1| pyridoxal phosphate enzyme, YggS family [Trichinella spiralis]
Length = 256
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 100/244 (40%), Gaps = 26/244 (10%)
Query: 3 LGNKLQVFKQKIENS---AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+ + + +I + A R LVAVSK I A + GQ F EN +Q
Sbjct: 5 VQRNIVAVQSQITAAWNCTDPALRFGSIPRLVAVSKRKPVVDICAAYAAGQRHFGENYVQ 64
Query: 60 EAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK--------TASL 108
E +K + D++ FIG LQ NKV +++ + V
Sbjct: 65 ELIEKANDEQLLVACPDIRWHFIGHLQLNKVRKLIENVPNLHVVETVDSVKLAETLNRVA 124
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAM 167
+ V +QVNT EIQK G P Q + ++ + L + GLM I A
Sbjct: 125 RGRVDQTLLGKINVMLQVNTSGEIQKHGCEPEQVLQLARMVVQDCPFLQLIGLMTIGTAS 184
Query: 168 GNPKPHFYLLSEIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ S++ + E +LSMGM+ DF+ AI G++SVR+GS IFG
Sbjct: 185 SCAEVARGEFSKLFQIRNQICTDLDWEVGQLELSMGMSNDFQEAICCGSSSVRVGSAIFG 244
Query: 217 ERPC 220
R
Sbjct: 245 SRDA 248
>gi|227548919|ref|ZP_03978968.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079008|gb|EEI16971.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
Length = 241
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 97/234 (41%), Gaps = 18/234 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR---VALSCGQVIFAENKLQ 59
L LQ +++I + A RP SV L+ VSK I G + EN+ Q
Sbjct: 7 LAANLQRVREQIGEAVEAAGRPAGSVRLIPVSKFHPVTDIVALGELGELGVDLVGENREQ 66
Query: 60 EAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ K L + V++ IG +QS K + + + +V K AS L M
Sbjct: 67 EARAKAEELAQAGSAVRIAMIGQIQSKKANAVARWAAEVHSVDSVKLASGLDRGMELALE 126
Query: 119 F-------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
L +QV+ + + G+ + L + GLM +PP +
Sbjct: 127 RGDRTTTLLRCLVQVSDDGDTARGGVAYGGLDEVADAIESAQHLELGGLMVVPPLGADET 186
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F E A + LS GM+ DFE AIA G+ VR+G+G+FG RP
Sbjct: 187 AVFSRARERADALGQRFGRPMD-LSAGMSGDFEKAIACGSDIVRVGTGVFGARP 239
>gi|242309417|ref|ZP_04808572.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523988|gb|EEQ63854.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 223
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 11/224 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L KIE + I R + + LVAVSK V ++I+ CGQ F ENK+Q
Sbjct: 1 MNRFQENLINAIDKIEKARISVDRHR-IIRLVAVSKYVSHQEIQALYECGQRAFGENKVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSR 118
+ K + ++ FIG+LQSNK++ ++ + ++ A+ L + +++
Sbjct: 60 DLSYK-SQTLESLPLEWHFIGNLQSNKINALLKLKPFMFHSLHSLSLANELQKRLERENL 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L +Q+N+ E KSG P + ++ + + + GLM I + K
Sbjct: 119 TLKTLLQINSAKETTKSGFDPESAYESYLQIQETCPNIKLCGLMSIGAHTQDTKIIQNSF 178
Query: 178 ------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E ++ LSMGM+ DFELAI G+ VR+GS +F
Sbjct: 179 ELTSKIYEKLQKNGANILSMGMSGDFELAIKCGSNCVRLGSTLF 222
>gi|171778698|ref|ZP_02919794.1| hypothetical protein STRINF_00646 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282655|gb|EDT48079.1| hypothetical protein STRINF_00646 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 224
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +++ + A R ++SV ++AV+K VDS + G EN++
Sbjct: 1 MTDFQKNKDLVFEQVAQATKAANRSQESVKIIAVTKYVDSGVAARLIDTGIEHIGENRVD 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+ K+ ++ IG+LQ KV +++ D + K A+ + +
Sbjct: 61 MFLDKYEA-LKDKNLTWHLIGTLQRRKVKNVINYVDYFHALDSVKLAAEIQK---RAEHP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
+ ++QVN E K G ++ + + ++ + GLM + P + +
Sbjct: 117 IKCFLQVNISEEESKHGFKVSEIDEALAEISDFDKVEIVGLMTMAPKNASESEIDDIFGK 176
Query: 178 -SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + T+LSMGM+ DF +AI +GAT VRIGS F
Sbjct: 177 ADKLRQELQARQLAHMPFTELSMGMSGDFPIAIRNGATFVRIGSSFF 223
>gi|241667528|ref|ZP_04755106.1| hypothetical protein FphipA2_02080 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876074|ref|ZP_05248784.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842095|gb|EET20509.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 222
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 24/229 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I++ A L+AVSK KI S GQ+ F EN QE +
Sbjct: 7 IQSSYSSIIKNIDSKA----------RLLAVSKYQSIDKIEYLASLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K +++ FIGSLQS K+ IV D I++V + + +S I +++ + V
Sbjct: 57 QKAQQ---LPNLKWHFIGSLQSRKIKHIVKYADSIQSVEKIEHLEKISKAAINENKHIDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N ++ KSG Q D + ++ L V GLMCIP +P+ F +
Sbjct: 114 FLQINIDDDVSKSGFKSIQLDDVIEAIVKAKKFSNLKVVGLMCIPAKSDSPEKSFAKMKV 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A E KL++LSMGM+ D++LAI G+T VRIGS +FG R
Sbjct: 174 FFDTINASLAYELKLSRLSMGMSADYKLAIQYGSTDVRIGSSLFGIREA 222
>gi|299140885|ref|ZP_07034023.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris C735]
gi|298577851|gb|EFI49719.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris C735]
Length = 224
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 28/236 (11%)
Query: 1 MSL--GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M++ L V LVA+SK + I A + GQ IF E+
Sbjct: 1 MNVDVAKNLHEVL----------GNLPKDVRLVAISKYHPCEYIEAAYAEGQRIFGESHE 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K K D+Q FIG LQ+NKV I +IE V K ++ K +R
Sbjct: 51 QELKLKVEK--LPKDIQWHFIGHLQTNKVKYIAPYISMIEAVDSMKLLKEINKHANKHNR 108
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ V ++++ E K G+ P+ ++ R + + GLM + N
Sbjct: 109 IIKVLLELHIAEEETKYGLTPDACRELLADGEWRTLDHVQICGLMMMASNTDNQDQIASE 168
Query: 177 L---SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K S GM+ D++ AI G+T VR+G+ IFG R
Sbjct: 169 FETAARFFDEIKAHYFADSDAFKDRSWGMSHDYKTAICHGSTMVRVGTTIFGPRVY 224
>gi|167381023|ref|XP_001735540.1| proline synthetase associated protein [Entamoeba dispar SAW760]
gi|165902419|gb|EDR28257.1| proline synthetase associated protein, putative [Entamoeba dispar
SAW760]
Length = 228
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 15/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQ 59
MS + KI L+ + + V L+AVSK + ++ + +F EN +Q
Sbjct: 1 MS-EESYPLVIDKIN---HLSSQREKPVCLIAVSKTKPKEAVQHLYNKYNHYVFGENYIQ 56
Query: 60 EAKKKWIP-LRKEWDVQLRFIGSLQSNKVS--EIVSLFDVIETVSREKTASLLSLEMIKQ 116
E +K +++ FIG LQSNK+ I+T+ + A L+ I
Sbjct: 57 ELHEKATELEEVCPNIEWHFIGRLQSNKLKLLISTPHLKCIQTIHSLEIAEKLNKACINA 116
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
++ + V +Q+N+ E QK G+ + + V + L+ G+M I K +F
Sbjct: 117 NKVIDVMVQINSSGEEQKGGVSVEEALNVVKEVMKYSNLHFIGIMTIGMVGD-SKKNFTT 175
Query: 177 LSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++A + ++SMGM+ D+ELAI GAT VR+G+ +FG R
Sbjct: 176 MKQLADIICSQEHLESIEISMGMSSDYELAIELGATMVRVGTALFGARDYS 226
>gi|322412243|gb|EFY03151.1| pyridoxaL 5'-phosphate dependent enzyme class III family protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 223
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ + + A RP+ SVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQKNKRIVFDNVRLATEAAHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V IG+LQ KV E+++ D + K AS + + +
Sbjct: 61 FLDKYEA-LKDRSVTWHLIGTLQRRKVKEVINSVDYFHALDSVKLASEIEK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + + + GLM + PA + + + E
Sbjct: 117 KCFLQVNISEEDSKHGFKVSEIEVAIEEISKMENIQLVGLMTMAPADASQERIASIFREA 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSGDYLIAIQEGSTFVRIGTSFF 222
>gi|224419125|ref|ZP_03657131.1| hypothetical protein HcanM9_07617 [Helicobacter canadensis MIT
98-5491]
gi|253828061|ref|ZP_04870946.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313142632|ref|ZP_07804825.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511467|gb|EES90126.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131663|gb|EFR49280.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 223
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 106/222 (47%), Gaps = 10/222 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L +KIE + I R + V LVAVSK +++I+ CGQ F ENK+Q+
Sbjct: 3 NFKENLINAIEKIEKARIAVDRHR-IVRLVAVSKYSTTQEIQALYECGQRAFGENKVQDL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG+LQSNK++ ++ + ++ + A L + ++ +L
Sbjct: 62 TQK-ANTLESLPLEWHFIGNLQSNKINALLKLKPFMFHSLHSLELAKQLQKRLEQEHIYL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM------GNPKPH 173
+Q+N+ E KSG+MP + + + + + GLM I
Sbjct: 121 KTLLQINSAKESTKSGVMPEEAIEIYYQILEECPNVKLCGLMSIGAHSTDCNLIQKSFET 180
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E + LSMGM+ DFELAI G+ VR+GS +F
Sbjct: 181 TRALFEKLQNFGANTLSMGMSGDFELAIRCGSNCVRLGSTLF 222
>gi|309812660|ref|ZP_07706404.1| pyridoxal phosphate enzyme, YggS family [Dermacoccus sp. Ellin185]
gi|308433355|gb|EFP57243.1| pyridoxal phosphate enzyme, YggS family [Dermacoccus sp. Ellin185]
Length = 259
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I + A R D+ +LV V+K + G EN+ QE
Sbjct: 30 LQANLERVRVRIAAATSAAGRD-DAPTLVVVTKFFPVTDLVALADLGVGDVGENREQELV 88
Query: 63 KKWIPLRKEWD-----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K LR E + FIG +QS K I DV++++ R K LL +
Sbjct: 89 EKVDALRAERPDLIASPRRHFIGQIQSKKARRIARHADVVQSLDRLKLVPLLDAGAADRE 148
Query: 118 RFLPVYIQVNTGYEIQ-KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L +++QV + + G + + Q L + GLM + P P F
Sbjct: 149 NPLDIFVQVALERDGSGRGGAQETELHEVAAAVEQAPHLRLCGLMAVAPLGEEPAAAFSR 208
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+ + ++ + T LS GM+ D E A+ GAT +R+GS I G RP
Sbjct: 209 LAHVRQDFLANFPQATSLSAGMSGDLEDAVQIGATHLRVGSAILGSRP 256
>gi|260912321|ref|ZP_05918872.1| K+ uptake protein [Prevotella sp. oral taxon 472 str. F0295]
gi|260633622|gb|EEX51761.1| K+ uptake protein [Prevotella sp. oral taxon 472 str. F0295]
Length = 224
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ Q + +V LVAVSK ++++ A GQ IF E+ QE
Sbjct: 4 DVAGNLKRVVQSL----------PPNVKLVAVSKFHPNEELMAAYEQGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNKV I D+IE V K ++ + + R +
Sbjct: 54 SRKAAE--LPKDIAWHFIGHLQSNKVKYIAPYIDMIEAVDSLKLLREINKQAERCGRVID 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G + ++ R+ + + GLM + + + + +
Sbjct: 112 VLLELHVAQEASKFGFTLDACRELLAGGEWRELSHVRICGLMTMASNVDDEQQIRTEMTT 171
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E K + S GM+ D+ +A+ G+T VR+G+ IFGER
Sbjct: 172 TWRFFDEMKSLHFAHDDAFKERSWGMSHDYPIALQCGSTMVRVGTNIFGERQY 224
>gi|121714355|ref|XP_001274788.1| alanine racemase family protein, putative [Aspergillus clavatus
NRRL 1]
gi|119402942|gb|EAW13362.1| alanine racemase family protein, putative [Aspergillus clavatus
NRRL 1]
Length = 266
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 96/252 (38%), Gaps = 31/252 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK-DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+L + L +I +A A R V LVAVSK+ + I + +
Sbjct: 10 TLLSNLSSVTSRITTAASTAHRAPTHPVRLVAVSKLKTAADILALHNPPTNHSHFGENYL 69
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVS------------EIVSLFDVIETVSREKTASL 108
+ ++ FIG LQSNK E V + +
Sbjct: 70 QELTEKSKLLPPTIRWHFIGGLQSNKCVALARDVRGLWAVESVDSEKKASLLDKGWGERA 129
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCI---- 163
+ L V++QVNT E K+G+ P + +L ++G+M I
Sbjct: 130 AEVRATDADDRLRVFVQVNTSGEENKAGVEPAAAVALARFVREKCPRLRLQGVMTIGAIA 189
Query: 164 ---PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSVRI 210
N F L E I RE L +LSMGM+ DFE AIA G+ VR+
Sbjct: 190 RSKATTPENENEDFVCLRETRDRIVRELGLQGPEAELELSMGMSEDFEGAIALGSDQVRV 249
Query: 211 GSGIFGERPCQT 222
G+ IFG RP ++
Sbjct: 250 GTTIFGHRPPKS 261
>gi|238786366|ref|ZP_04630298.1| alanine racemase [Yersinia bercovieri ATCC 43970]
gi|238712724|gb|EEQ04804.1| alanine racemase [Yersinia bercovieri ATCC 43970]
Length = 198
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 89/196 (45%), Gaps = 11/196 (5%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
SK I A++ GQ F EN +Q + + ++ FIG LQSNK +
Sbjct: 2 SKTKPVTAIEEAIAAGQYAFGENYVQEGVDKIHYFANKPYNHPLEWHFIGPLQSNKSRLV 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
F TV R K A LS + + L V IQVN E KSGI +
Sbjct: 62 AENFAWCHTVDRLKIAQRLSAQRPAELPALNVLIQVNISDEQSKSGITLAELPALAANIS 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIA 202
+ L++ GLM IP + + + ++ A+ ++ LSMGMT D AIA
Sbjct: 122 ELPNLHLRGLMAIPAPEADYQRQLAVFEQMNQAFLTLKAQYPQMDTLSMGMTDDMPAAIA 181
Query: 203 SGATSVRIGSGIFGER 218
+G+T VRIG+ IFG R
Sbjct: 182 AGSTLVRIGTAIFGAR 197
>gi|257463045|ref|ZP_05627447.1| proline synthetase associated protein [Fusobacterium sp. D12]
gi|317060649|ref|ZP_07925134.1| proline synthetase associated protein [Fusobacterium sp. D12]
gi|313686325|gb|EFS23160.1| proline synthetase associated protein [Fusobacterium sp. D12]
Length = 226
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +++ + V ++AVSK ++++++ L G V EN+ Q +
Sbjct: 4 IEERMKEVYEEVRQ----YSPYPEKVKVIAVSKYLNAEEMLPYLETGIVTLGENRAQVIQ 59
Query: 63 KKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ ++ FIG+LQ NKV IV +I +V++ A ++ +M +R
Sbjct: 60 EKYELLSSYPFAKSLEWHFIGNLQKNKVKYIVDKVAMIHSVNKLSLAEEINKKMGSLNRK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+PV I+VN E K G + + + + + + GLM + P + + + +
Sbjct: 120 MPVLIEVNVSGEESKEGYDVLEAEQDIPALLKLENIRICGLMTMAPFTEDAEEQRKVFRK 179
Query: 180 I-------AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ ++ KLT+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 180 LRILKEEWNKKYFQDKLTELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|288802419|ref|ZP_06407858.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
D18]
gi|288334947|gb|EFC73383.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
D18]
Length = 223
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N L D V LVA+SK ++ + VA GQ IF E+++QE
Sbjct: 3 DVANNLHEVL----------GNLPDGVKLVAISKFHPNEYLEVAYREGQRIFGESQVQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV I ++E V K ++ + K +R +
Sbjct: 53 SRKVE--TLPKDIEWHFIGHLQTNKVKYIAPYISMVEAVDSLKLLKEINKQAAKYNRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G P+ ++ ++ +++ GLM + + + +
Sbjct: 111 VLLELHIAEEETKYGFTPDACRELLESGEWKELKNVHISGLMMMASNVDDRNQIKKEMML 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ E K + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKAKYFADDPEFKERSWGMSHDYDIAVECRSTMVRVGTTIFGPRVY 223
>gi|187607726|ref|NP_001119881.1| proline synthase co-transcribed bacterial homolog protein [Danio
rerio]
gi|169642405|gb|AAI60662.1| Prosc protein [Danio rerio]
Length = 283
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/250 (27%), Positives = 111/250 (44%), Gaps = 32/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIF 53
MS +G K+Q +++ + R + LVAVSK + + A GQ F
Sbjct: 7 MSEEVGKKVQAVVERVNQA---VSRRPKTLPCIPPRLVAVSKTKPPEMVVEAYKHGQRNF 63
Query: 54 AENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
EN + E +K + +++ FIG LQ V++++ + ++ + +
Sbjct: 64 GENYVNELVEKASNPQILSSCPEIKWHFIGHLQKGNVNKLLGVPNLYMVETIDSVKLAEK 123
Query: 111 LE------MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI 163
+ + L + +Q+NT E K G+ P++T + V Q L++ GLM I
Sbjct: 124 VNSSWQKLRAANTHRLKIMVQINTSGEDSKHGLPPDETVNMVKHVVSQCPALDLAGLMTI 183
Query: 164 PPA----MGNPKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIG 211
P P F LL E+ K+ +LSMGM+ DFE AI G+T++R+G
Sbjct: 184 GRYGYDLNDGPNPDFQLLLKCRVEVCESLKIPLEQVELSMGMSTDFEHAIEVGSTNIRVG 243
Query: 212 SGIFGERPCQ 221
S IFG R
Sbjct: 244 STIFGTREYP 253
>gi|315221955|ref|ZP_07863866.1| pyridoxal phosphate enzyme, YggS family [Streptococcus anginosus
F0211]
gi|315188921|gb|EFU22625.1| pyridoxal phosphate enzyme, YggS family [Streptococcus anginosus
F0211]
Length = 223
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + + A R K+SV ++AV+K VDS + + G EN++ +
Sbjct: 1 MDLAKNTYQVLENVAQATQKANRSKNSVEVIAVTKYVDSSTAKELVKAGIHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E V IG+LQ KV ++++ D + K A ++ + +
Sbjct: 61 FLEKYQALKDER-VIWHLIGTLQRRKVKDVINYVDYFHALDSVKLAQEINK---RAEHII 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEASKHGFAVEEIDTILPELEKLENIQIVGLMTMAPIEADEAELNVMFQQA 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T LSMGM+RD+ +AIA+G+T VRIG+ F
Sbjct: 177 YQLQQRLQRKQLPNMPFTDLSMGMSRDYTIAIANGSTFVRIGTAFF 222
>gi|169610101|ref|XP_001798469.1| hypothetical protein SNOG_08144 [Phaeosphaeria nodorum SN15]
gi|111063300|gb|EAT84420.1| hypothetical protein SNOG_08144 [Phaeosphaeria nodorum SN15]
Length = 269
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 98/247 (39%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L L +I+ +A + R V L+AVSK+ + I F EN +Q
Sbjct: 15 LTENLTSITSRIK-AANKSNRN---VRLIAVSKLKPANDILALHQPPNPLHTHFGENYVQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS--------- 110
E + ++ IG LQSNK ++ + VS + +
Sbjct: 71 ELLE--KSKLLPRSIRWHMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKAL 128
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPA--- 166
+E L + +QVNT E KSG+ P T + L + GLM I
Sbjct: 129 IEKDNAVEKLRIMVQVNTSGEEAKSGVEPADTTALCKHVIEKCPHLELIGLMTIGAIARS 188
Query: 167 ----MGNPKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L ++A+E +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 189 KETTPETENEDFVCLKDVRDKVAQELGWEQDKLELSMGMSADFEGAIKMGSDEVRVGSQI 248
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 249 FGERPVK 255
>gi|189204762|ref|XP_001938716.1| alanine racemase family protein (ISS) [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985815|gb|EDU51303.1| alanine racemase family protein (ISS) [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 269
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 98/247 (39%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL---SCGQVIFAENKLQ 59
L + +I+ ++ V L+AVSK+ + I F EN +Q
Sbjct: 15 LAENISTISSRIKAASK----DNKQVRLIAVSKLKPANDILALHQQPDPTHTHFGENYVQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------- 111
E + ++ IG LQSNK ++ + VS + +
Sbjct: 71 ELIE--KSKLLPRTIRWHMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKAL 128
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI------ 163
E + L V +QVNT E +KSG+ P+ + L + GLM I
Sbjct: 129 LEKDNSAEKLRVKVQVNTSGEKEKSGVEPSDAIILCRQIIEKCPHLQLSGLMTIGAIARS 188
Query: 164 -PPAMGNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGI 214
N F L E +A+E + LSMGM+ DFE AI G+ VR+GS I
Sbjct: 189 RATTPENENEDFVALRETRDKVAKELGWEEGQLELSMGMSADFEGAIRMGSDEVRVGSEI 248
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 249 FGERPQK 255
>gi|21910707|ref|NP_664975.1| hypothetical protein SpyM3_1171 [Streptococcus pyogenes MGAS315]
gi|28895603|ref|NP_801953.1| hypothetical protein SPs0691 [Streptococcus pyogenes SSI-1]
gi|94988873|ref|YP_596974.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS9429]
gi|94992763|ref|YP_600862.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS2096]
gi|21904910|gb|AAM79778.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810852|dbj|BAC63786.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|94542381|gb|ABF32430.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS9429]
gi|94546271|gb|ABF36318.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS2096]
Length = 223
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K V+ IG+LQ KV E+++ D + + A ++ + +
Sbjct: 61 FLEKYDA-LKCMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + ++ + GLM + PA + + + +
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 180 --IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L +LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|56808759|ref|ZP_00366476.1| COG0325: Predicted enzyme with a TIM-barrel fold [Streptococcus
pyogenes M49 591]
Length = 223
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K V+ IG+LQ KV E+++ D + + A ++ + +
Sbjct: 61 FLEKYDA-LKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + ++ + GLM + PA + + + +
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEMGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 180 --IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L +LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|297199060|ref|ZP_06916457.1| alanine racemase domain-containing protein [Streptomyces sviceus
ATCC 29083]
gi|197715987|gb|EDY60021.1| alanine racemase domain-containing protein [Streptomyces sviceus
ATCC 29083]
Length = 239
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I + A R ++ V+L+ V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVEQRIAAACAAAGRGREEVTLIVVTKTYPASDVRILSELGVRHVAENKDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V D++++V R K + LS E +K R +
Sbjct: 68 PKAAECSDL-PLTWHFVGQLQTNKVRSVVGYADLVQSVDRSKLVTALSKEAVKAEREVGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV + ++ G+ P + L + L ++GLM + P G + F
Sbjct: 127 LIQVALDAGSSERGERGGVAPGGIGELAGLVARAPGLRLDGLMTVAPLTGEYAGREQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTDLRRDHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|209736652|gb|ACI69195.1| Proline synthetase co-transcribed bacterial homolog protein [Salmo
salar]
Length = 282
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 26/247 (10%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G L K+ +A + +V LVAVSK + A G F EN
Sbjct: 6 MSEEVGKALHAVVDKVNQAAARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFGEN 65
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+ E K L+ +++ FIG LQ N V++++ + ++ + + +
Sbjct: 66 YVNELVDKASNLQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSAKLADKVNS 125
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA 166
++ L + +Q+NT E K G+ P +T + V + L+ GLM I
Sbjct: 126 SWQRLRAASTQTLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSALHFSGLMTIGRY 185
Query: 167 ----MGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS I
Sbjct: 186 GYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTI 245
Query: 215 FGERPCQ 221
FG R
Sbjct: 246 FGNRDYP 252
>gi|315453855|ref|YP_004074125.1| Alanine racemase domain-containing protein [Helicobacter felis ATCC
49179]
gi|315132907|emb|CBY83535.1| Alanine racemase domain protein [Helicobacter felis ATCC 49179]
Length = 218
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 7/219 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L+ Q IE + + R V L+AVSK ++++ +CGQ F EN +QE
Sbjct: 1 MELKKRLENLLQCIEKARLAYSRH-HIVQLIAVSKNATIEQVQGLYACGQRAFGENYIQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + ++ +G LQ NK+++++ L + + K+
Sbjct: 60 LQHKST-TLENLPLEWHMLGPLQHNKINKLLELKPALLHSLHSLELAQAINTRAKEPLKA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
+ + + + + + + +++++GLM I P G + + S+
Sbjct: 119 LLQVNIAGETQKSGVSAE-RALEIYAQIQETCPKISLQGLMVIGPLGGMEAQNEKVFSQA 177
Query: 180 --IAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LSMGM+ DFELAIA GA VRIGS +F
Sbjct: 178 KNLFDKLPDAKVLSMGMSGDFELAIAYGANLVRIGSLLF 216
>gi|289741895|gb|ADD19695.1| proline synthetase co-transcribed protein [Glossina morsitans
morsitans]
Length = 250
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 24/245 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS--LVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+ LQ ++I+ + + + LVAVSK + I A S GQ F EN +Q
Sbjct: 5 DVKAGLQQILKRIDAAYEQRPKDLEGGKPFLVAVSKTKPIEMIIDAYSVGQRHFGENYVQ 64
Query: 60 EAKKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM--- 113
E K +K D++ FIG LQ+NKV++I+ L ++ + + +L
Sbjct: 65 ELVDKSQHPDILQKCPDIKWHFIGHLQNNKVNKILKLPNIHLIQTVDTEKLADNLNNSWR 124
Query: 114 ---IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL-NVEGLMCIPPAMGN 169
I + L V IQ+NT E K+GI PN+ ++ V+G+M I +
Sbjct: 125 KLEIDNKQPLRVLIQINTSGEDAKNGIEPNEAPRLYKHIKENLTNLQVDGVMTIGAFGHD 184
Query: 170 PKPH--------FYLLSEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +I + L ++SMGM+ DFE AI G+T VR+GS IFG
Sbjct: 185 YTKGPNPDFVCLMQVHRQICEDYHLKPEEVQVSMGMSDDFEKAIEMGSTIVRVGSSIFGH 244
Query: 218 RPCQT 222
R Q+
Sbjct: 245 RAKQS 249
>gi|315609071|ref|ZP_07884041.1| YggS family pyridoxal phosphate enzyme [Prevotella buccae ATCC
33574]
gi|315249275|gb|EFU29294.1| YggS family pyridoxal phosphate enzyme [Prevotella buccae ATCC
33574]
Length = 222
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 28/234 (11%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + +L + V LVAVSK +++I A + GQ +F E+
Sbjct: 1 MNTDVAQRLHTVL----------GSLPEGVRLVAVSKYHPAERIFEAYNEGQRLFGESHE 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE + K D++ FIG LQ+NKV I +IE V + + + + R
Sbjct: 51 QELRHKVEA--LPRDIEWHFIGHLQTNKVKYIAPYIAMIEAVDSLRLLREIEKQAARCDR 108
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ V ++++ E K G+ + + R+ + + GLM + +
Sbjct: 109 TIRVLLELHIAEEATKYGLSLDDCRALLDGGEWREMTHVQICGLMMMASNTDDKLRIARE 168
Query: 177 L------------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + S GM+ D+ +A+ G+T VR+G+GIFGER
Sbjct: 169 FDLAARFFDEVKARHFAGNDNFCERSWGMSHDYRIAVDHGSTLVRVGTGIFGER 222
>gi|260891128|ref|ZP_05902391.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia hofstadii
F0254]
gi|260859155|gb|EEX73655.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia hofstadii
F0254]
Length = 227
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 14/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + V ++ VSK D ++ + + G F EN+ Q +
Sbjct: 8 IQQNYEKILEDI----KKYSPYPEKVKILFVSKYFDVEEHKALIEMGYDYFGENRAQLYR 63
Query: 63 KKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K +++ FIG LQ NK+ I++ ++I ++ + ++ + I+ R +
Sbjct: 64 DKLNEFSDEKYKNIKWDFIGRLQKNKIKYIINSVNLIHSIDSYELLDEINKKAIENDRII 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---L 177
IQVN E K+G+ K + + G M + P + +
Sbjct: 124 NGLIQVNVSKEESKTGVYIEDFKKDSEKYFSMSNVKIIGFMTMAPFEASESEINDYFLNM 183
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T++SMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 184 RKLKEEYQKQHDYVTEISMGMSNDYVEALKNGATIIRIGSKLF 226
>gi|307565803|ref|ZP_07628265.1| pyridoxal phosphate enzyme, YggS family [Prevotella amnii CRIS
21A-A]
gi|307345488|gb|EFN90863.1| pyridoxal phosphate enzyme, YggS family [Prevotella amnii CRIS
21A-A]
Length = 223
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +++ + V L+AVSK + I A + GQ F E+ +QE
Sbjct: 3 DVVDNLHSVLREL----------PNGVKLIAVSKYHPIEYIEAAYAEGQRAFGESLVQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK D++ FIG LQ+NKV IV +IE V K + + K +R +
Sbjct: 53 SKKVTS--LPKDIEWHFIGHLQTNKVKYIVPYISMIEAVDSVKLLREIEKQASKYNRVIK 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G + F+ R + + GLM + + + + +
Sbjct: 111 VLLELHIAKEESKYGFSFEDCRAFIDSGEWRNMSHVCISGLMMMASNVSDKEQVRKEMLS 170
Query: 178 ----------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + S GM++D+++A++ +T VRIG+ IFG R
Sbjct: 171 ASIFFDEIKKKYFSDKASFKERSWGMSQDYDVAVSCNSTMVRIGTKIFGPRLY 223
>gi|19746469|ref|NP_607605.1| hypothetical protein spyM18_1536 [Streptococcus pyogenes MGAS8232]
gi|71903849|ref|YP_280652.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS6180]
gi|94990773|ref|YP_598873.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10270]
gi|94994751|ref|YP_602849.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10750]
gi|139473459|ref|YP_001128175.1| hypothetical protein SpyM50604 [Streptococcus pyogenes str.
Manfredo]
gi|209559683|ref|YP_002286155.1| hypothetical protein Spy49_1172c [Streptococcus pyogenes NZ131]
gi|306827035|ref|ZP_07460333.1| YggS family pyridoxal phosphate enzyme [Streptococcus pyogenes ATCC
10782]
gi|19748673|gb|AAL98104.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|71802944|gb|AAX72297.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS6180]
gi|94544281|gb|ABF34329.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10270]
gi|94548259|gb|ABF38305.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10750]
gi|134271706|emb|CAM29939.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
gi|209540884|gb|ACI61460.1| hypothetical protein Spy49_1172c [Streptococcus pyogenes NZ131]
gi|304430781|gb|EFM33792.1| YggS family pyridoxal phosphate enzyme [Streptococcus pyogenes ATCC
10782]
Length = 223
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K V+ IG+LQ KV E+++ D + + A ++ + +
Sbjct: 61 FLEKYDA-LKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + ++ + GLM + PA + + + +
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 180 --IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L +LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|119960860|ref|YP_947475.1| alanine racemase N-terminal domain-containing protein [Arthrobacter
aurescens TC1]
gi|119947719|gb|ABM06630.1| putative alanine racemase, N-terminal domain protein [Arthrobacter
aurescens TC1]
Length = 252
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L + +++IE + A R D L+ V+K + +R ++ G EN+ QEA
Sbjct: 23 LADRLGLVRRRIEAAVHAAGRT-DPPKLIVVTKFHPAADVRRLVALGVTDVGENRDQEAA 81
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
K + + DV+ FIG LQSNK +V ++++ R + L + ++
Sbjct: 82 SKSVE-LADVDVRWHFIGQLQSNKAKSVVKYAHSVQSIDRPQVVDALVKAIAREKGATGR 140
Query: 119 ---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ + ++ + G P+ + L + GLM + P +P F
Sbjct: 141 SDLDCFIQVSLDDDAGAHRGGADPSDVEVLAEKIESADGLRLSGLMAVAPLGADPNAAFE 200
Query: 176 LLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ I+ + +S GM++D E A+ GAT +RIGS I G RP
Sbjct: 201 KLAGISEALRAVHPAATGISAGMSQDLEAAVTFGATHLRIGSDILGSRPA 250
>gi|15675419|ref|NP_269593.1| hypothetical protein SPy_1519 [Streptococcus pyogenes M1 GAS]
gi|71911061|ref|YP_282611.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS5005]
gi|13622607|gb|AAK34314.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853843|gb|AAZ51866.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS5005]
Length = 223
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K V+ IG+LQ KV E+++ D + + A ++ + +
Sbjct: 61 FLEKYDA-LKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + ++ + GLM + PA + + + +
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 180 --IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L +LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|241949269|ref|XP_002417357.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223640695|emb|CAX45006.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 246
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 67/237 (28%), Positives = 98/237 (41%), Gaps = 27/237 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q++++ V+LVAVSK+ S I S G F EN +QE
Sbjct: 16 LITNYNNTLQQVQSL-------NPKVNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELI 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL-- 120
K D++ FIG LQS K ++ + V + +++
Sbjct: 69 SKSQE--LPPDIKWHFIGGLQSGKAKDLSKHVKNLYAVETIDSLKKCKQLDNTRNKIDGS 126
Query: 121 ---PVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHF 174
V++QVNT E QKSG Q + + +L GLM I +
Sbjct: 127 DDINVFLQVNTSGEEQKSGFQNLQDIESTVEFLLSSDCKKLKFLGLMTIGSFNESISNEG 186
Query: 175 Y--------LLSEIAR-ECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +I + L +LSMGM+ DFE AI G+TSVR+G+ IFG RP +
Sbjct: 187 ENQDFKKLVEMKQILDSKYNLNLELSMGMSSDFEQAIKQGSTSVRVGTTIFGSRPPK 243
>gi|251782910|ref|YP_002997213.1| pyridoxaL 5'-phosphate dependent enzyme classIII family
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
gi|242391540|dbj|BAH81999.1| pyridoxaL 5'-phosphate dependent enzyme classIII family
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
Length = 223
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ + + A RP+ SVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQKNKRIIFDNVRLATEAAHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V IG+LQ KV ++++ D + K AS + + +
Sbjct: 61 FLDKYEA-LKDKSVTWHLIGTLQRRKVKDVINFVDYFHALDSVKLASEIEK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + + + GLM + PA + + + E
Sbjct: 117 KCFLQVNISEEDSKHGFKVSEIEAAIEEIGKMGNIQLVGLMTMAPADASQERIASIFREA 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSGDYSIAIQEGSTFVRIGTSFF 222
>gi|328675263|gb|AEB27938.1| hypothetical protein FN3523_0081 [Francisella cf. novicida 3523]
Length = 222
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI S GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIMYLASLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K ++ FIGSLQS K+ IV I++V + + ++ + ++ + V
Sbjct: 57 QKAQK---LPGLRWHFIGSLQSRKIRHIVKYASSIQSVEKLEQLEKINKAAKQLAKKIEV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L V GLMCIP +P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFINLKVVGLMCIPSKSNSPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYTLAIKYGSTDVRVGSSLFGAR 220
>gi|227543139|ref|ZP_03973188.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181127|gb|EEI62099.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 233
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + A R D V L+ V+K + + + S G EN+ QEAK
Sbjct: 7 IAAGLQRVRQRIAEAKAAAGRT-DEVCLLPVTKFHPASDVEILHSLGIEAVGENRDQEAK 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI-------K 115
KK + +G +Q+ K + + +++V L M +
Sbjct: 66 KKAAEFPS---MAFHMLGQIQTKKANSVARWASAVQSVDSLTLVQALDRGMQLALDRGDR 122
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L VY+Q++ + + G++ V L + GLMC+PP + F
Sbjct: 123 TTETLDVYVQLSLDGDESRGGVIAADVPFLVEAIEGSTHLRLVGLMCVPPVASDADEAFA 182
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ ++ + S GM+ D E+AI +G+T VR+G+ I G R
Sbjct: 183 TALDVKQDLDARAGHPLEFSAGMSADLEVAIKNGSTLVRVGTDILGPR 230
>gi|56708695|ref|YP_170591.1| hypothetical protein FTT_1686c [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671167|ref|YP_667724.1| hypothetical protein FTF1686c [Francisella tularensis subsp.
tularensis FSC198]
gi|134302727|ref|YP_001122695.1| hypothetical protein FTW_1929 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|224457903|ref|ZP_03666376.1| hypothetical protein FtultM_09950 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371325|ref|ZP_04987327.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875569|ref|ZP_05248279.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56605187|emb|CAG46319.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321500|emb|CAL09702.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134050504|gb|ABO47575.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569565|gb|EDN35219.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254841568|gb|EET20004.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159945|gb|ADA79336.1| hypothetical protein NE061598_09510 [Francisella tularensis subsp.
tularensis NE061598]
Length = 222
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|323127715|gb|ADX25012.1| pyridoxaL 5'-phosphate dependent enzyme class III family protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
Length = 223
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + + A RP+ SVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQKNKTIIFDNVRLATEAAHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V IG+LQ KV ++++ D + K AS + + +
Sbjct: 61 FLDKYEA-LKDKSVTWHLIGTLQRRKVKDVINFVDYFHALDSVKLASEIEK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + + + GLM + PA + + + E
Sbjct: 117 KCFLQVNISEEDSKHGFKVSEIETAIEEIGKMGNIQLVGLMTMAPADASQERIASIFREA 176
Query: 180 --IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSGDYSIAIQEGSTFVRIGTSFF 222
>gi|262282739|ref|ZP_06060507.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp.
2_1_36FAA]
gi|262262030|gb|EEY80728.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp.
2_1_36FAA]
Length = 223
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + A RP++SVS+VAV+K VDS + + G EN++ +
Sbjct: 1 MDLQKNKDQVFAAVAEATKKANRPENSVSIVAVTKYVDSSTAKELVKTGVNHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ ++ IG+LQ KV E+++ D + K A + + +
Sbjct: 61 FLEKY-QYLKDEELTWHLIGTLQRRKVKEVINFVDYFHALDSLKLAEEIEK---RAEHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G ++ + + + L + G+M + P + +
Sbjct: 117 KCFLQVNVSGEESKHGFAVDEIEAVLPALEKLEHLEIVGIMTMAPIDAGEEDLEKIFQAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ ++ + +++SMGM+RDF AIA+G+T VRIG+ F
Sbjct: 177 HELQKKLQDKQITNMPFSEISMGMSRDFATAIANGSTFVRIGTSFF 222
>gi|118496714|ref|YP_897764.1| hypothetical protein FTN_0099 [Francisella tularensis subsp.
novicida U112]
gi|194324022|ref|ZP_03057797.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|118422620|gb|ABK89010.1| conserved protein of unknown function [Francisella novicida U112]
gi|194321919|gb|EDX19402.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 222
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ + + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVIQSIIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|46447369|ref|YP_008734.1| hypothetical protein pc1735 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401010|emb|CAF24459.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 210
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
+ R V+L+ VSK ++ G F EN++ EA K + + D+Q I
Sbjct: 3 SSGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPR--DIQWHLI 60
Query: 80 GSLQSNKV-SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
G+LQSNKV + S +I +V A +S +++ + + +QVN E K G+
Sbjct: 61 GTLQSNKVAKILNSSISLIHSVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLT 120
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECK--------LT 187
++ + + ++ L +EGLM I P G + F L E+ + K
Sbjct: 121 HDEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFRQLFELREKWKKQMNNPTYFK 180
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFG 216
LSMGMT D+ +AI GAT +RIGSGIFG
Sbjct: 181 HLSMGMTNDYLIAIEEGATLLRIGSGIFG 209
>gi|302346534|ref|YP_003814832.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
ATCC 25845]
gi|302150942|gb|ADK97203.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
ATCC 25845]
Length = 223
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N L D V LVA+SK ++ + VA GQ IF E+++QE
Sbjct: 3 DVANNLHEVL----------GNLPDGVKLVAISKFHPNEYLEVAYREGQRIFGESQVQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV I ++E V K ++ + K +R +
Sbjct: 53 SRKVE--TLPKDIEWHFIGHLQTNKVKYIAPYISIVEAVDSLKLLKEINKQAAKFNRIIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G P+ ++ ++ +++ GLM + + + +
Sbjct: 111 VLLELHIAEEETKYGFTPDACRELLEGGEWKELKNVHISGLMMMASNVDDRNQIKKEMML 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ E K + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKAKYFADDPEFKERSWGMSHDYDIAVECRSTMVRVGTTIFGPRIY 223
>gi|269121913|ref|YP_003310090.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
gi|268615791|gb|ACZ10159.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
Length = 223
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 16/222 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + I + V ++ V+K D ++ + ++ G F ENK Q
Sbjct: 8 IIENYSKIENDI----KKYSPYPEKVKILFVTKYFDIEEHQKIVNMGFNYFGENKAQL-F 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ I +++ FIG LQ NK+ I+ ++I ++ ++ + + R + V
Sbjct: 63 RDKIKTIDNPELRWDFIGRLQKNKIKYIIKRVNLIHSIDTISLLEEVNEKACEIGRKVDV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN +E K+G + ++ + + +N+ GLM + P + E
Sbjct: 123 LIQVNVSHEETKTGF--HVSELSDVFKVRADNINIRGLMTMAPLTDDESELRKYFRETFE 180
Query: 183 ---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +LSMGM+ D++ A+ GAT VRIGS +F
Sbjct: 181 VKNDINKKYNLNLDELSMGMSNDYKEALMEGATIVRIGSKLF 222
>gi|163790533|ref|ZP_02184962.1| hypothetical protein CAT7_08130 [Carnobacterium sp. AT7]
gi|159874136|gb|EDP68211.1| hypothetical protein CAT7_08130 [Carnobacterium sp. AT7]
Length = 223
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ Q +Q ++ S + R + V ++AV+K V S++ A+ G + AEN+ +
Sbjct: 1 MSVKENSQKIEQLLDVSLAKSSRKRSDVQVIAVTKSVSSEQAVEAIEEGYLHLAENRPEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIG+LQ+ KV ++++ D + R A + + ++ +
Sbjct: 61 LALKQKE-LSDHRLVWHFIGNLQARKVKKVINDIDYFHALDRLSLAEEIEK---RANKVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E KSG+ P Q F+ Q ++ + GLM + P + F L
Sbjct: 117 LCFVQVNVTGEETKSGVSPEQLDAFITSLSQYSKIKIVGLMTMAPLNASEMVIRSAFVHL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K T+LSMGM++DF +A+ GAT VRIG+ F
Sbjct: 177 RKLQESIKDKALPYAPCTELSMGMSKDFTIAVEEGATFVRIGTSFF 222
>gi|54112585|gb|AAV28926.1| NT02FT1551 [synthetic construct]
Length = 222
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDHINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|15903552|ref|NP_359102.1| hypothetical protein spr1509 [Streptococcus pneumoniae R6]
gi|116516370|ref|YP_816934.1| YlmE protein [Streptococcus pneumoniae D39]
gi|15459170|gb|AAL00313.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076946|gb|ABJ54666.1| YlmE protein [Streptococcus pneumoniae D39]
Length = 223
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVIKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K+ DV IG+LQ KV +++ D + K A + + R +
Sbjct: 61 FLEKYEA-LKDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQK---RSDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G + + + + ++ GLM + P + + +
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|62262072|gb|AAX78042.1| unknown protein [synthetic construct]
Length = 257
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 27/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI GQ+ F EN QE +
Sbjct: 33 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 82
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 83 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 140 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 199
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER---PC 220
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R P
Sbjct: 200 FFDTVNSRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARATYPY 251
>gi|257466117|ref|ZP_05630428.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917274|ref|ZP_07913514.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691149|gb|EFS27984.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 226
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ ++++ + V ++AVSK + ++++ L G + EN++Q +
Sbjct: 4 IEERIKEIYEEVKQ----YSPYPEKVKVIAVSKYLTAQEMLPYLETGIITLGENRVQVIQ 59
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ ++ FIG+LQ NKV IV +I +V++ A ++ +M +
Sbjct: 60 EKYEELSTYPFAKSLEWHFIGNLQKNKVKYIVDKVSMIHSVNKLSLAEEINKKMEALGKK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+PV I+VN E K G + + + +++ GLM + P + + + +
Sbjct: 120 MPVLIEVNVSGEESKEGYEVLEAEKDLPKLLNLKNISICGLMTMAPFTEDIEEQRRVFQK 179
Query: 180 IA--------RECK--LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + LT+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 180 LRTLKEDWNEKYFQGSLTELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|94985526|ref|YP_604890.1| hypothetical protein Dgeo_1426 [Deinococcus geothermalis DSM 11300]
gi|94555807|gb|ABF45721.1| Protein of unknown function UPF0001 [Deinococcus geothermalis DSM
11300]
Length = 219
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 95/225 (42%), Gaps = 17/225 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVA------LSCGQVIFA 54
MSL I +A A RP +SV LVAV+K D + IR L G
Sbjct: 1 MSLPE----VLAGIRAAAERAGRPAESVRLVAVTKGHDLEAIRTQVLRYADLQPGGFPLG 56
Query: 55 ENKLQEAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
EN+ QE + K + FIG LQ NKV + ++ ++ + A ++
Sbjct: 57 ENRAQELRDKVAEWSALGWPSAEWHFIGPLQLNKVKYLRP-VRLVHSLEDVRQAQAIADA 115
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
K + V +Q++ G + V + L V GLM + P
Sbjct: 116 AAKWGQAPDVLLQLHNGEAQKHGIH--PADLRRVYAGVMQTGLKVRGLMVMAPEGDEAAA 173
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ F ++ A + L +LSMGM+ D+ LAI GAT VR+G +F
Sbjct: 174 RRVFAETAQRAHDLGLPELSMGMSGDYPLAIEQGATLVRVGRSLF 218
>gi|288926315|ref|ZP_06420239.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccae D17]
gi|288336920|gb|EFC75282.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccae D17]
Length = 222
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 28/234 (11%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + +L + V LVAVSK +++I A + GQ +F E+
Sbjct: 1 MNTDVAQRLHTVL----------GSLPEGVRLVAVSKYHPTERIFEAYNEGQRLFGESHE 50
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE + K D++ FIG LQ+NKV I +IE V + + + + R
Sbjct: 51 QELRHKVEA--LPRDIEWHFIGHLQTNKVKYIAPYIAMIEAVDSLRLLREIEKQAARCDR 108
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ V ++++ E K G+ + + R+ + + GLM + +
Sbjct: 109 TIRVLLELHIAEEATKYGLSLDDCRALLDGGEWREMTHVQICGLMMMASNTDDKLRIARE 168
Query: 177 L------------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + S GM+ D+ +AI G+T VR+G+GIFGER
Sbjct: 169 FDLAARFFDEVKARHFAGNDNFCERSWGMSHDYRIAIDHGSTLVRVGTGIFGER 222
>gi|224282377|ref|ZP_03645699.1| hypothetical protein BbifN4_00962 [Bifidobacterium bifidum NCIMB
41171]
gi|313139521|ref|ZP_07801714.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132031|gb|EFR49648.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 275
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 67/249 (26%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + A SV L+A +K D +I A+ G + EN+ QE
Sbjct: 24 IRDGVHRVLDAIAEAESAAGCAPGSVKLLAATKTRDVGEIMAAIDAGIRMIGENRPQEVM 83
Query: 63 KKWIPLRKEW---------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K LR+ + IG LQ+NK+ +I+ + IE+V
Sbjct: 84 AKAEGLRRLCADRGFALGTGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVD 143
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A ++ + + + V ++VN E KSG P D Q + +EGLM
Sbjct: 144 GVELAQRIARRAVARGITVGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLM 203
Query: 162 CIPPAMGNPKPHFYLLSEIA---REC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + + T+LSMGMT D LAIA GAT VR
Sbjct: 204 TIGAHVDDEATIRACFAHLRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVR 263
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 264 VGTAIFGER 272
>gi|325962954|ref|YP_004240860.1| hypothetical protein Asphe3_15570 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469041|gb|ADX72726.1| conserved hypothetical protein TIGR00044 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 244
Score = 131 bits (329), Expect = 7e-29, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +I ++A A R +L+ V+K + IR S G EN+ +
Sbjct: 14 LAGRLTAVQGRISSAAAAAGRVGPLPTLIVVTKFHPAGDIRRLASLGVTDVGENR-DQEA 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--- 119
L + + F+G LQ+ K + + +V R + L+ + K+
Sbjct: 73 AAKAELLADCGLTWHFVGQLQTKKAKSVARYASAVHSVDRLQLVEALAKAVQKEQERTGR 132
Query: 120 ----LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ + + + G MP + L + G+M + P P+P F
Sbjct: 133 APLDCFIQVSLEDDAGTHRGGAMPAEVPLLADAIAAAEGLRLAGVMAVAPLGAPPEPAFE 192
Query: 176 LL-----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +A+ T +S GM++D E AIA GAT +RIGS I G RP
Sbjct: 193 KLAGVSAQLVAQHPAATAISAGMSQDLEAAIAFGATHLRIGSDILGSRPA 242
>gi|323345163|ref|ZP_08085387.1| cell division protein YlmE [Prevotella oralis ATCC 33269]
gi|323094433|gb|EFZ37010.1| cell division protein YlmE [Prevotella oralis ATCC 33269]
Length = 224
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V LVAVSK + I A + GQ +F E+ QE K D++ FIG LQ+
Sbjct: 17 PEGVRLVAVSKFHPDEYIEAAYAEGQRVFGESHEQELSK--KAATLPKDIEWHFIGHLQT 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV +I+ V K + + + R + V ++++ E K G D
Sbjct: 75 NKVKHIVPYISMIDAVDSLKLLREIDKQAARCGRVIRVMLELHIAEEETKYGFSRQDCLD 134
Query: 145 F--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECK---------LTKLS 190
R+ + + + GLM + + + E + RE K + S
Sbjct: 135 MLAGGAWRELHNVQICGLMMMASNVDDEAQIAKEFDEAADLFREVKQRFFADDDAFCERS 194
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
GM+ D+ +A+ G+T VR+G+GIFG R
Sbjct: 195 WGMSHDYRIAVKHGSTMVRVGTGIFGPRVY 224
>gi|282879843|ref|ZP_06288570.1| pyridoxal phosphate enzyme, YggS family [Prevotella timonensis CRIS
5C-B1]
gi|281306237|gb|EFA98270.1| pyridoxal phosphate enzyme, YggS family [Prevotella timonensis CRIS
5C-B1]
Length = 222
Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVA+SK ++ I A +CGQ +F E++ QE +K D+Q FIG LQ+
Sbjct: 16 PAHVKLVAISKFHPAESIAEAYACGQRVFGESREQELSRKVE--MLPKDIQWHFIGHLQT 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +IE V EK + + + R + V ++++ E K G +
Sbjct: 74 NKVRLIAPYITMIEAVDSEKLLLEIEKQAARHQRVIDVLLELHIAEEATKYGFSLSDCSQ 133
Query: 145 F--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK---------LTKLS 190
+ R + + GLM + + + + S E K + S
Sbjct: 134 WLAKGQWRSLEHVRICGLMMMASNVDDEAQIREEMTLASRFFDEVKSQYFADAPYFKERS 193
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +A+ G+T VR+GS IFGER
Sbjct: 194 WGMSHDYRIAVECGSTMVRVGSAIFGER 221
>gi|269127132|ref|YP_003300502.1| alanine racemase domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268312090|gb|ACY98464.1| alanine racemase domain protein [Thermomonospora curvata DSM 43183]
Length = 244
Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + ++L+AV+K + +R+ G EN+ QEA
Sbjct: 19 LAANLDKVRRRIAAACAAAGRDPEQITLIAVTKTFPASDVRLLAGLGVAHVGENRDQEAA 78
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NK + DV+ +V R + S LS ++ R L
Sbjct: 79 PKAAQCADL-PLTWHFVGQLQTNKARSVARYADVVHSVDRSRLVSALSAGALRAGRTLRC 137
Query: 123 YIQVNTGYEIQ-KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+QV+ + + G P + + L + G+M + P +P P F L+++A
Sbjct: 138 LVQVSLEEHAEGRGGAAPERVPELAAQIASAEGLELGGVMAVAPLGADPAPAFERLAQVA 197
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E + T +S GM+ D E AIA GAT +RIG+ + G R
Sbjct: 198 AELRAEHPAATIISAGMSGDLEQAIACGATHLRIGTALLGGRNA 241
>gi|253581436|ref|ZP_04858661.1| proline synthetase associated protein [Fusobacterium varium ATCC
27725]
gi|251836506|gb|EES65041.1| proline synthetase associated protein [Fusobacterium varium ATCC
27725]
Length = 225
Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + ++ I+ ++ ++R +AV+K V ++++ ++CG +F ENK Q
Sbjct: 3 DIKKNILEIEEDIKKHSLNSERA----RFIAVTKYVGAEEMIPIVNCGVKVFGENKAQIM 58
Query: 62 KKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K + DV+ FIG+LQ NKV I +I +V++ A + + +R
Sbjct: 59 KEKQEKFNEMGIKDVEWHFIGNLQKNKVKYIAEYVKMIHSVNKLSLAQEIDKRAKQYNRI 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G + + + + +N+ GLM + P + + + F
Sbjct: 119 IDVLLEINIAGEESKEGYELEELYEELPQLMELKNINIVGLMTMAPFVNDEELLRSVFRR 178
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L EI E KL +LSMGMT D+++A+ GAT +R+G IF
Sbjct: 179 LREIKDELNEKWFKGKLVELSMGMTNDYKIALEEGATLIRVGRKIF 224
>gi|148273036|ref|YP_001222597.1| hypothetical protein CMM_1855 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830966|emb|CAN01911.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 243
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 10/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + + A R D V+ + V+K +R + G E++ QEA+
Sbjct: 24 LAERWASVQADVADGIRAAGRRPDEVTTIVVTKFQPVSLLRALVELGVRDLGESRHQEAQ 83
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + V F+G LQ K ++ VI +V R L+ + V
Sbjct: 84 GKAAE-LEGTGVAWHFVGQLQGKKARQVRRYASVIHSVDRPSLVDALA----SDEQETRV 138
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN + + G+ P + + + V G+M + P G P+ F L I+
Sbjct: 139 FLQVNLTDDDGRGGVRPAEAEALAEHAAAASGIRVLGVMAVAPDDGEPRRAFARLRGISD 198
Query: 183 EC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +S GM+ D A+ GAT +RIGS I G+RP
Sbjct: 199 DVRRILPGARAISAGMSGDLREALLEGATHLRIGSAITGKRP 240
>gi|73662892|ref|YP_301673.1| hypothetical protein SSP1583 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495407|dbj|BAE18728.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 224
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++IE ++AV+K V + A + G F EN+L+
Sbjct: 1 MDVQYNLEKINEQIEAHCKKGNITTK-PDVIAVTKYVTIDRANDAYNVGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K DV + FIGSLQ+ KV ++++ D + R K A ++ + +
Sbjct: 60 FQQKKAA--LPDDVVMHFIGSLQTRKVKDVINEIDYFHALDRLKLAKEINK---RAEHKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G+ ++ + F+ +Q + + GLM + P + L +
Sbjct: 115 KCFVQVNVSGESSKQGVSLSEVETFIKELKQYENIEIIGLMTMAPLTDDESYIKRLFQLL 174
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L T+LSMGM+ DF LA GA+ VRIG+ + G+
Sbjct: 175 KLKRDEIKALNLNYAPCTELSMGMSNDFHLAAEEGASFVRIGTKLVGK 222
>gi|72389014|ref|XP_844802.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62176349|gb|AAX70461.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801336|gb|AAZ11243.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261328062|emb|CBH11039.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 257
Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/241 (29%), Positives = 103/241 (42%), Gaps = 27/241 (11%)
Query: 3 LGNKLQVFKQKIENSAI------LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ + ++ I +A A R V LVAVSK ++ CG F EN
Sbjct: 15 IAENYREVQKCIREAAAEGAGGGSADRA---VKLVAVSKTKSPACLQALYDCGHRDFGEN 71
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK-----TASLLSL 111
+QE + D+ FIG LQSNKV E++S ++ V
Sbjct: 72 YVQEVVE--KAAVLPGDIHWHFIGHLQSNKVKELLSGVSGLQIVQTVDSESLAQKLDSGC 129
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMC--IPPAM 167
+ R L VY+QVNT E KSG+ P + + + L + GLM +P
Sbjct: 130 VSYRGGRPLDVYVQVNTSGETTKSGVEPGSATVELARHISTKCPNLRLTGLMTIGMPDYT 189
Query: 168 GNPKPHFYLLS---EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P+ LL E+A L LSMGM+ D+ AI G+T VR+G+G+FG+R
Sbjct: 190 SRPENFECLLRCREEVAAALNLDATTLALSMGMSGDYTNAIRMGSTVVRVGTGLFGQRYY 249
Query: 221 Q 221
Sbjct: 250 P 250
>gi|320546324|ref|ZP_08040643.1| cell division protein YlmE [Streptococcus equinus ATCC 9812]
gi|320449045|gb|EFW89769.1| cell division protein YlmE [Streptococcus equinus ATCC 9812]
Length = 224
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +++ N+ A R ++SV ++AV+K VDS + G EN++
Sbjct: 1 MTDFQKNKDLVFEQVANATKAANRSQESVKVIAVTKYVDSGVAARLIDTGIEHIGENRVD 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+ K+ ++ IG+LQ KV +++ D + K A+ + +
Sbjct: 61 MFLDKYEA-LKDKNLTWHLIGTLQRRKVKNVINYVDYFHALDSVKLAAEIQK---RAEHP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
+ ++Q+N E K G ++ + + ++ + GLM + P + +
Sbjct: 117 IKCFLQINISEEESKHGFKVSEIDEALEQISNFDKVEIVGLMTMAPKNASDSEIDDIFGK 176
Query: 178 -SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + T+LSMGM+ DF +AI +GAT VRIGS F
Sbjct: 177 ADQLRQDLQERHLPHMPFTELSMGMSGDFPIAIRNGATFVRIGSSFF 223
>gi|50914615|ref|YP_060587.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10394]
gi|50903689|gb|AAT87404.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10394]
Length = 223
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R D VS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDGVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K V+ IG+LQ KV E+++ D + + A ++ + +
Sbjct: 61 FLEKYDA-LKYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINK---RADHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
++QVN E K G ++ + + + ++ + GLM + PA + + + +
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 180 --IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L +LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|290961160|ref|YP_003492342.1| hypothetical protein SCAB_68051 [Streptomyces scabiei 87.22]
gi|260650686|emb|CBG73802.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 239
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R +D V+LV V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVESRIAAACAAAGRGRDEVTLVVVTKTYPADDVRILSELGVRHVAENKDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V D++++V R + + LS E ++ R +
Sbjct: 68 PKAAECSDLH-LVWHFVGQLQTNKVRSVVRYADLVQSVDRSRLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGYEIQ----KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
+QV + + G+ P+ + L + L V+GLM + P G + F
Sbjct: 127 LVQVALDADASGRGERGGVGPDGIGELADLLAEAPGLRVDGLMTVAPLTGEYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTDLRRTHPAATMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|188990801|ref|YP_001902811.1| hypothetical protein xccb100_1405 [Xanthomonas campestris pv.
campestris str. B100]
gi|167732561|emb|CAP50755.1| Conserved hypothetical protein [Xanthomonas campestris pv.
campestris]
Length = 227
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 72/215 (33%), Positives = 98/215 (45%), Gaps = 11/215 (5%)
Query: 17 SAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
+AI A P D+ L+AVSK + + + GQ F EN +QEA K L+ +
Sbjct: 11 AAIQAATPPDTAPARLLAVSKTQPADAVAALAAQGQQAFGENYVQEAAAKIAQLQALQ-L 69
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQSNK FD ++TV R K +LL+ L V IQVN E K
Sbjct: 70 EWHLIGHLQSNKADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSK 129
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIA-----RECKL 186
G P L + GLM IP P + F + + + +
Sbjct: 130 HGCAPEAIDVLAAEIATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFATLRSQYPQA 189
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LSMGM+ DF AIA+GAT VR+G+ +FG+R
Sbjct: 190 DTLSMGMSADFADAIAAGATMVRVGTALFGQRNAP 224
>gi|260435963|ref|ZP_05789933.1| pyridoxal phosphate enzyme, YggS family [Synechococcus sp. WH 8109]
gi|260413837|gb|EEX07133.1| pyridoxal phosphate enzyme, YggS family [Synechococcus sp. WH 8109]
Length = 255
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/208 (32%), Positives = 99/208 (47%), Gaps = 5/208 (2%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A+ A RP S L+AVSK + +R GQ F E+++QEA K L +++
Sbjct: 46 ALQAARPSSS-RLLAVSKGHPAASVRCVAELGQCDFGESRVQEALPKQEELIDL-NLRWH 103
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQSNKV +V FDVI +V A +S +++ R V +QV + K G+
Sbjct: 104 FIGRLQSNKVRPVVKAFDVIHSVDSLALAERVSRIAVEEGRQPEVLLQVKLHPDPSKGGL 163
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECKLTKLSMGMT 194
+ + L + GLM + P L +A L + SMGM+
Sbjct: 164 SAGELGAIWSDLQALPGLRISGLMTMAPLDMAIGQRKELFSDCRALADRLALAECSMGMS 223
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D++ A +G+T +RIGS +FG R T
Sbjct: 224 TDWKEAAEAGSTWLRIGSVLFGPRLVST 251
>gi|308234720|ref|ZP_07665457.1| pyridoxal phosphate enzyme, YggS family protein [Gardnerella
vaginalis ATCC 14018]
gi|311113967|ref|YP_003985188.1| YggS family pyridoxal phosphate enzyme [Gardnerella vaginalis ATCC
14019]
gi|310945461|gb|ADP38165.1| YggS family pyridoxal phosphate enzyme [Gardnerella vaginalis ATCC
14019]
Length = 266
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 26/242 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + I + +SV+L+A +K D +I AL G + EN+ QE
Sbjct: 22 IADGVHSVQDAIAQAESHYGCKSESVTLLAATKTRDVGEIMAALKAGVRVIGENRPQEIV 81
Query: 63 KKWI-----------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K + + L IG LQSNK+++++ L + I++V + A +S
Sbjct: 82 AKAEILRAQAARENLSVGVNGKIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISA 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
V ++VN E KSG +P + D + LN+ G M + + + K
Sbjct: 142 RAQNLGLCTDVMLEVNVSGEATKSGCVPERAIDEALAISSLTALNLRGFMTLGARVDDEK 201
Query: 172 PHFYLLSEIAR-------ECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+++ + +LSMGM+ DF AIA G+T VRIGS IFG
Sbjct: 202 IVRSGFAKLREIRDCVSEQLAQDHDGNSAKLELSMGMSGDFVWAIADGSTMVRIGSAIFG 261
Query: 217 ER 218
R
Sbjct: 262 PR 263
>gi|257452084|ref|ZP_05617383.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
gi|317058633|ref|ZP_07923118.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
gi|313684309|gb|EFS21144.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
Length = 226
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/226 (23%), Positives = 109/226 (48%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ ++++ + V ++AVSK + ++++ L G + EN++Q +
Sbjct: 4 IEERIKEIYEEVKQ----YSPYPEKVKVIAVSKYLTAQEMLPYLETGIITLGENRVQVIQ 59
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ ++ FIG+LQ NKV I +I +V++ A ++ +M +
Sbjct: 60 EKYEELSTYPFAKSLEWHFIGNLQKNKVKYIADKVSMIHSVNKLSLAEEINKKMEALGKK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+PV I+VN E K G + + + +++ GLM + P + + + +
Sbjct: 120 MPVLIEVNVSGEESKEGYEVLEAEKDLPKLLNLKNISICGLMTMAPFTEDIEEQRRVFHK 179
Query: 180 IA--------RECK--LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + LT+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 180 LRTLKEDWNEKYFQGSLTELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|296412370|ref|XP_002835897.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629694|emb|CAZ80054.1| unnamed protein product [Tuber melanosporum]
Length = 264
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/243 (28%), Positives = 101/243 (41%), Gaps = 30/243 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEA 61
L LQ Q+I + A +SV LVAVSK+ + + G F EN E
Sbjct: 23 LAENLQAVLQRISSVAH----SPNSVRLVAVSKLKPATDVLAIHERTGHTHFGENYSHEL 78
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV---------IETVSREKTASLLSLE 112
+K L + FIG+LQ+NK + ++ + L
Sbjct: 79 LEKAASLPTALN--WHFIGALQTNKCKHLAERIPNLWAVESVDTVKKADALEKGRAALLS 136
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP-----A 166
+ L VY+QVNT E KSG P + L ++GLM I
Sbjct: 137 TSPSTPKLRVYVQVNTSGEESKSGCQPTAAPVLAKHILEECKHLTLQGLMTIGAIARSRE 196
Query: 167 MGNPKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L E+A+ + +LSMGM+ DFE A++ G ++VR+G+ IFG+R
Sbjct: 197 SDIPNEDFLTLKRVRDEVAQRVGIDSDQLELSMGMSEDFEQAVSLGTSNVRVGTIIFGQR 256
Query: 219 PCQ 221
P +
Sbjct: 257 PLK 259
>gi|187930942|ref|YP_001890926.1| hypothetical protein FTM_0034 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711851|gb|ACD30148.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 222
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +L++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLRLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGAR 220
>gi|311895534|dbj|BAJ27942.1| hypothetical protein KSE_21190 [Kitasatospora setae KM-6054]
Length = 262
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG L V +++I ++ A RP+ V+L+ V+K ++ + G AEN+ Q+A
Sbjct: 30 LGANLDVVERRIADACAAAGRPRGEVTLIVVTKTYPAEDSALLAGLGVTDVAENRDQDA- 88
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL-----LSLEMIKQS 117
E + F+G LQ+NK +V DV+ +V R + + E
Sbjct: 89 APKAERCVELPLTWHFVGQLQTNKARSVVRYSDVVHSVDRARLVDSLAAAVRAAERPPLG 148
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPH 173
+ V ++ G ++G+ P + L ++G+M + P G P
Sbjct: 149 CLVQVALEKEAGEGEHRAGVAPAEVLALAERIADTPGLRLDGVMTVAPLAGPLAGDPARA 208
Query: 174 FYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+EIA + + +S GM+ D E AIA+GAT VR+G+ + G R
Sbjct: 209 FARLAEIASDVRAAHPAATMVSAGMSGDLEQAIAAGATHVRVGTAVLGVRSP 260
>gi|303289263|ref|XP_003063919.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454235|gb|EEH51541.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 248
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/246 (30%), Positives = 105/246 (42%), Gaps = 28/246 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L QK+ ++ A R + LVAV K +++R G +F EN QE
Sbjct: 1 MT-AKHLAEVVQKVAAASARAGRSAPA-RLVAVGKTKPVEQLRECYDAGHRVFGENYAQE 58
Query: 61 AKKKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASL 108
W P D + FIG LQSNK +V +IETV K A+
Sbjct: 59 RSIHWSPYDRELTEKSPAMPPDTRWHFIGHLQSNKAKTLVKAVPGLAMIETVDSVKLANR 118
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPA 166
L+ ++ R P+ + VNT E K G+ PN I+ L GLM I
Sbjct: 119 LADACVEAGRVEPLGVMVNTSGEASKHGVEPNAATALASHIVNECAPALAFRGLMTIGMP 178
Query: 167 MGNPKPHFYLL--------SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
+P + L ++ L +LSMGM+ D+E AI+ G+ +VR+GS I
Sbjct: 179 DYTSRPENFELLAKARSTRDDVCDALGLDATEVELSMGMSGDYESAISMGSDNVRVGSTI 238
Query: 215 FGERPC 220
FG R
Sbjct: 239 FGARDY 244
>gi|116071131|ref|ZP_01468400.1| hypothetical protein BL107_15835 [Synechococcus sp. BL107]
gi|116066536|gb|EAU72293.1| hypothetical protein BL107_15835 [Synechococcus sp. BL107]
Length = 220
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 4/200 (2%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
L+AVSK + IR S GQ F E++LQEA +K L + +Q FIG LQ
Sbjct: 17 PPRARLLAVSKGHPAASIRAVASLGQQAFGESRLQEAVEK-QALLSDLKLQWHFIGRLQR 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F VI +V A +S +++ V +QV + K G+ P++
Sbjct: 76 NKVRGVVKAFSVIHSVDSLALAERVSRIAVEEGCCPDVLLQVKFREDPTKGGMEPSELLS 135
Query: 145 FVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
L + GLM + P + F +A + L SMGM+ D+ A+
Sbjct: 136 AWPQLCALPSLRLMGLMTMAPLGLEGEERQSLFVECRSLADQLGLPDCSMGMSGDWTEAV 195
Query: 202 ASGATSVRIGSGIFGERPCQ 221
A+G+T +R+GS +FG+R
Sbjct: 196 AAGSTWLRLGSAVFGQRDVP 215
>gi|68488827|ref|XP_711760.1| hypothetical protein CaO19.10312 [Candida albicans SC5314]
gi|68488872|ref|XP_711736.1| hypothetical protein CaO19.2794 [Candida albicans SC5314]
gi|46433058|gb|EAK92514.1| hypothetical protein CaO19.2794 [Candida albicans SC5314]
gi|46433083|gb|EAK92538.1| hypothetical protein CaO19.10312 [Candida albicans SC5314]
Length = 277
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 96/238 (40%), Gaps = 28/238 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q++++ V+LVAVSK+ S I S G F EN +QE
Sbjct: 45 LITNYNNTLQQVQSL-------NPKVNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELI 97
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSR 118
K D++ FIG LQS K ++ + V + +
Sbjct: 98 AKSQE--LPNDIKWHFIGGLQSGKAKDLSKHVANLYAVETIDSLKKCKQLDNTRVKVEGD 155
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ V++Q+NT E QKSG Q + + +L GLM I +
Sbjct: 156 DINVFLQINTSGEEQKSGFQNLQDIESTVEFLLSSDCKKLKFLGLMTIGSFNESISNEND 215
Query: 176 LLSEIAREC-----------KLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ L +LSMGM+ DF+ AI G+TSVR+G+ IFG RP
Sbjct: 216 KENQDFKKLVEMKQILDSKYNLNLELSMGMSNDFQQAIKQGSTSVRVGTTIFGSRPPS 273
>gi|238878824|gb|EEQ42462.1| hypothetical protein CAWG_00673 [Candida albicans WO-1]
Length = 277
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 28/238 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q++++ V+LVAVSK+ S I S G F EN +QE
Sbjct: 45 LITNYNNTLQQVQSL-------NPKVNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELI 97
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSR 118
K D++ FIG LQS K ++ + V + +
Sbjct: 98 AKSQE--LPNDIKWHFIGGLQSGKAKDLSKHVANLYAVETIDSLKKCKQLDNTRVKVEGD 155
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ V++Q+NT E QKSG Q + + +L GLM I +
Sbjct: 156 DINVFLQINTSGEEQKSGFQNLQDIESTVEFLLSSDCKKLKFLGLMTIGSFNESISNEND 215
Query: 176 LLSEIAREC-----------KLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ L +LSMGM+ DF+ AI G+TSVR+G+ IFG RP +
Sbjct: 216 KENQDFKKLVEMKQILDSKYNLNLELSMGMSNDFQQAIKQGSTSVRVGTTIFGSRPPR 273
>gi|124025159|ref|YP_001014275.1| TIM-barrel fold family protein [Prochlorococcus marinus str.
NATL1A]
gi|123960227|gb|ABM75010.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. NATL1A]
Length = 213
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 13/215 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ K I V+L+AVSK IR GQ+ F E++LQEA K I
Sbjct: 9 FKKIKDSI----------PLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKI 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L ++ F+G+LQ NKV ++ FD I +V +S ++ + +++QV
Sbjct: 59 DLSDLTQLRWHFVGTLQKNKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQV 118
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARE 183
+ K G + + +N+ GLM IPP + N L A
Sbjct: 119 KFIEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVLNSFQRKDLFCECRNFANH 178
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SMGM+ D++ AI GAT +R+GS +FG+R
Sbjct: 179 LGLKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR 213
>gi|282859305|ref|ZP_06268418.1| pyridoxal phosphate enzyme, YggS family [Prevotella bivia
JCVIHMP010]
gi|282587930|gb|EFB93122.1| pyridoxal phosphate enzyme, YggS family [Prevotella bivia
JCVIHMP010]
Length = 227
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 100/233 (42%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L K+ + V L+A+SK ++ I A + GQ +F E+++QE
Sbjct: 7 DVVTNLHSVLNKL----------PNGVRLIAISKYHPNEYIEAAYAEGQRVFGESQVQEL 56
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D++ FIG LQ+NKV IV +IE V K + + K R +
Sbjct: 57 SQKVE--TLPKDIEWHFIGHLQTNKVKYIVPYISMIEAVDSVKLLREIEKQAAKHDRVVN 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G + + ++ +++ GLM + +G+ +
Sbjct: 115 VLLELHIAQEESKYGFSFDDCRALLESGEWKKMPHVHISGLMMMASNVGDEAQIRKEMLS 174
Query: 178 ----------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A + + S GM+ D+++A+ +T VRIG+ IFG R
Sbjct: 175 AADFFDEVKQKYFADDSAFKERSWGMSHDYQIAVQCRSTMVRIGTTIFGPRIY 227
>gi|281420372|ref|ZP_06251371.1| pyridoxal phosphate enzyme, YggS family [Prevotella copri DSM
18205]
gi|281405517|gb|EFB36197.1| pyridoxal phosphate enzyme, YggS family [Prevotella copri DSM
18205]
Length = 224
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L V LVA+SK ++ I A + GQ IF E+ QE
Sbjct: 4 DVKGNLHEVL----------GSLPAGVRLVAISKFHPNEYIEEAYAEGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK D++ FIG LQ+NKV I +IE+V K + + K R +
Sbjct: 54 AKKVAS--LPEDIEWHFIGHLQTNKVKYIAPYISMIESVDSLKLLKEIEKQAAKHDRVVK 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V ++++ E KSG+ + ++ R+ + + G+M + + + E
Sbjct: 112 VLLELHLAEEDTKSGLSLDACRELLEAGEWREMKHVQICGIMMMASNTDDEQQIAQEFDE 171
Query: 180 ------------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A + + S GM+ D+ +A+ G+T VR+G+ IFG R
Sbjct: 172 AARFFDEIKARYFADDEAFCERSWGMSHDYHIAVKHGSTMVRVGTTIFGPRIY 224
>gi|225703472|gb|ACO07582.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 105/247 (42%), Gaps = 26/247 (10%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS +G LQ ++ +A + +V LVAV K + A G F EN
Sbjct: 6 MSEEVGKALQAVVDRVNQAAARRPKTLPAVPPRLVAVGKTKPPDMVIEAYRKGHRNFGEN 65
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+ E + + +++ FIG LQ N V++++ + ++ + + +
Sbjct: 66 YVNELVDRASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSVKLADKVNS 125
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCI--- 163
++ L + +Q+NT E K G+ P +T V + L+ GLM I
Sbjct: 126 SWLRLRTASTQTLKIMVQINTSGEESKHGLPPGETVTTVKHILSKCSALHFSGLMTIGRY 185
Query: 164 -PPAMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS I
Sbjct: 186 GHDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTI 245
Query: 215 FGERPCQ 221
FG R
Sbjct: 246 FGNRDYP 252
>gi|238798616|ref|ZP_04642091.1| alanine racemase [Yersinia mollaretii ATCC 43969]
gi|238717502|gb|EEQ09343.1| alanine racemase [Yersinia mollaretii ATCC 43969]
Length = 198
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/196 (32%), Positives = 87/196 (44%), Gaps = 11/196 (5%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
SK I A++ GQ F EN +Q + ++ FIG LQSNK +
Sbjct: 2 SKTKPVTAIEEAIAAGQYAFGENYVQEGVDKIHYLANKPHIPPLEWHFIGPLQSNKSRLV 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
F TV R K A LS + L V IQVN E KSGI +
Sbjct: 62 AENFAWCHTVDRLKIAQRLSAQRPADMPALNVLIQVNISDEQSKSGIALAELPALAANIS 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIA 202
+ L++ GLM IP + + + ++ A+ ++ LSMGMT D AIA
Sbjct: 122 ELPNLHLRGLMAIPAPETDYQRQLAVFEQMNQAFLTLKAQYPQMDTLSMGMTDDMPAAIA 181
Query: 203 SGATSVRIGSGIFGER 218
+G+T VRIG+ IFG R
Sbjct: 182 AGSTLVRIGTAIFGAR 197
>gi|254375228|ref|ZP_04990708.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151572946|gb|EDN38600.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 222
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI S GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQSIDKIMCLASLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKNIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ + + L + GLMCIP P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVIQSIIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYTLAIQYGSTDVRVGSSLFGAR 220
>gi|183220725|ref|YP_001838721.1| hypothetical protein LEPBI_I1335 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910826|ref|YP_001962381.1| PLP dependent enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775502|gb|ABZ93803.1| PLP dependent enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779147|gb|ABZ97445.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 232
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 16/227 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
Q + ++ + + P +L+AVSK + +R A G F EN L EA +K+
Sbjct: 8 YQSLQNELNSLSK--GIPP---TLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEKFT 62
Query: 67 PLRKEWDV-----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
LR+E+ L IG +QS + ++ +F V + + L K+ + +
Sbjct: 63 KLREEFPESVNTVNLHHIGPVQSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKTIR 122
Query: 122 VYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++Q N E K G K + Q EG M + P+ G+ + S+
Sbjct: 123 YFLQTNLTAESTKHGFSLETLLEKKEELSLYQNEFCIWEGFMGMGPSSGDLLQTKEVFSK 182
Query: 180 I--ARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ R+ KLSMGM+ D++LA G+ VRIGS IFG+R T
Sbjct: 183 LTSFRDTHFPNLKLSMGMSGDYQLAAELGSNFVRIGSKIFGDRDYGT 229
>gi|322379239|ref|ZP_08053630.1| UPF0001 protein [Helicobacter suis HS1]
gi|322380918|ref|ZP_08054991.1| TIM-barrel fold-containing protein [Helicobacter suis HS5]
gi|321146655|gb|EFX41482.1| TIM-barrel fold-containing protein [Helicobacter suis HS5]
gi|321148379|gb|EFX42888.1| UPF0001 protein [Helicobacter suis HS1]
Length = 231
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 12/220 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M KL+ +IE ++ V L+AVSK ++I+ +CGQ F ENK+Q+
Sbjct: 17 MDFRKKLEQLLIRIEKASH----SNHPVQLIAVSKYATIEQIKALYACGQCAFGENKIQD 72
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ ++ +G LQ NK++++++L + + K+ L
Sbjct: 73 YQTKSNALQDL-PLEWHMLGVLQHNKINKLLALKPTLLHSLHSLELAEAIQTRAKEP--L 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+QVN E KSGI PN + + Q++++GLM I P + +
Sbjct: 130 NALLQVNIAEESSKSGISPNLALQTYLTISQTCPQIHLKGLMVIGPLNATRVQTESVFKK 189
Query: 180 ---IAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LSMGM+ DFE+AIA G+ VRIG+ +F
Sbjct: 190 AKKLFDQLPHAQILSMGMSGDFEIAIACGSNMVRIGNALF 229
>gi|254282330|ref|ZP_04957298.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR51-B]
gi|219678533|gb|EED34882.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR51-B]
Length = 229
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++A A R + V+L+AVSK + +R A G F EN LQ+A+
Sbjct: 6 IATNVSKVRDRIADAAAAAGRDPECVALLAVSKTKPAAMVRAAAEAGLHAFGENYLQDAE 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K LR ++ FIG LQSNK I + FD + +V R K A LS + + L +
Sbjct: 66 TKIEELRDL-GLEWHFIGPLQSNKTRTIAANFDWVHSVDRLKIARRLSEQRPEALGPLNI 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E KSG++P Q D + + GLM IP +P + +
Sbjct: 125 CLQVNISGEPSKSGVLPGQVPDLAATVASLPGITLRGLMAIPAPETDPVKQRQPFAALRH 184
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E AIA GAT VR+G+ +FG R
Sbjct: 185 LLESLSDSLPHLDTLSMGMSSDLEAAIAEGATIVRVGTDLFGAR 228
>gi|119583767|gb|EAW63363.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_d [Homo sapiens]
Length = 265
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 33/220 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 52 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 111
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ +++ FIG LQ V++++ + + + + + + L
Sbjct: 112 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMGKHGLPPSETIAIVEHINAKCPNLEFVGLM 171
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ P L ++
Sbjct: 172 TIGSFGHDLSQGPN----------------------------PDFQLLLSLREELCKKLN 203
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 204 IPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYS 243
>gi|326436868|gb|EGD82438.1| alanine racemase [Salpingoeca sp. ATCC 50818]
Length = 298
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 72/212 (33%), Positives = 98/212 (46%), Gaps = 16/212 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
LVAVSK + + A GQ +F EN +QE +K R D++ FIG LQSN
Sbjct: 83 PQPRLVAVSKTKPLQLVLDAYEAGQRVFGENYVQELVEKSNDPRVPEDIEWHFIGRLQSN 142
Query: 86 KVSE--IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
K + V V+ETV+ EK A L+ + L V++QVNT E K G+ P+
Sbjct: 143 KSNTLARVKNLKVVETVASEKLARTLNRAFAEHDAPLRVFMQVNTSGEENKGGVEPSDCA 202
Query: 144 DFVILC-RQKYQLNVEGLMCIPPAM-----GNPKPHFYLLS----EIARECKLT----KL 189
+ L + GLM I + F L +A + +L
Sbjct: 203 ALAAFIANECDHLQLAGLMTIGMLNRSLKTDDTNEDFETLVSCRGRVAEAIGVDADALEL 262
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 263 SMGMSSDFEHAIEMGSTNVRVGSTIFGARHYP 294
>gi|222151010|ref|YP_002560163.1| hypothetical protein MCCL_0760 [Macrococcus caseolyticus JCSC5402]
gi|222120132|dbj|BAH17467.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 220
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + KQ+IE++ + + +++AV+K V + + A+ G EN+++
Sbjct: 1 MEVRKNLDIIKQEIESALQKSA-DHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D + FIG+LQS KV E+++ D + ++ R A + + + +
Sbjct: 60 FLEKREA---LGDATMHFIGTLQSRKVKEVINQVDYLHSLDRLSLAKEIDK---RAEKTI 113
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI ++ DF+ Q+ V GLM + PA + +
Sbjct: 114 KCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAAADESELRRYFKTM 173
Query: 181 ARECKL------------TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ +L T+LSMGM+ D+++A+ GAT +RIG+ + G
Sbjct: 174 -KQLQLEVQNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG 220
>gi|50549285|ref|XP_502113.1| YALI0C21934p [Yarrowia lipolytica]
gi|49647980|emb|CAG82433.1| YALI0C21934p [Yarrowia lipolytica]
Length = 239
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 104/242 (42%), Gaps = 30/242 (12%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS L + K + + + LV VSK + I+ GQ F EN
Sbjct: 1 MSRVSELSHNYNQIKTSVSALS-------PTTRLVCVSKYKPASDIQAVYDLGQRHFGEN 53
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+QE +K ++Q FIGSLQSNK +++ + + + L ++
Sbjct: 54 YVQELMEKVA--NLPQEIQWHFIGSLQSNKCAQLAKNIPNLWVETVDGEKKAKKLNDARE 111
Query: 117 SRFL------PVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMG- 168
V++QVNT E QKSG+ P +K + ++ QL + GLM I
Sbjct: 112 QSEYKDKAPVHVFVQVNTSGESQKSGLDPEDVSKVVDYIIKECPQLKLAGLMTIGSIEQS 171
Query: 169 ---NPKPHFYLLSEIARECK--LT----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L +I + +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 172 KASEENKDFATLVQIRDSIEQAFDITGLELSMGMSSDFEEAIKQGSTNVRIGSTIFGGRM 231
Query: 220 CQ 221
+
Sbjct: 232 TK 233
>gi|308493557|ref|XP_003108968.1| hypothetical protein CRE_11760 [Caenorhabditis remanei]
gi|308247525|gb|EFO91477.1| hypothetical protein CRE_11760 [Caenorhabditis remanei]
Length = 244
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 23/243 (9%)
Query: 1 MSL---GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ L + I ++ + LVAVSK ++ I + GQ F EN
Sbjct: 1 MSIEIVQRNLLNILEAISDAVTSSS-ATQRCRLVAVSKTKPAELIESCYTQGQRHFGENY 59
Query: 58 LQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---- 112
+QE ++K +K +++ FIG +QSNK+ +I + + + E +
Sbjct: 60 VQELEEKSAVLAQKCQEIRWHFIGQVQSNKIGKICNSPGIWCVETVETEKHARLFDKEWS 119
Query: 113 -MIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCI------- 163
S L V++QVNT E K GI ++ K + ++ L +G M I
Sbjct: 120 KYGATSSPLRVFVQVNTSEEENKGGIRISEAPKLAEFIRKECMNLKFDGFMTIGSFDNSH 179
Query: 164 -----PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +I + +LSMGM+ DF AI G+TSVR+GS +FG R
Sbjct: 180 SSGVNPDFEKLFNVRQQWAEQIGEAAESVELSMGMSDDFLQAIHQGSTSVRVGSKLFGAR 239
Query: 219 PCQ 221
+
Sbjct: 240 EYK 242
>gi|259483672|tpe|CBF79253.1| TPA: alanine racemase family protein, putative (AFU_orthologue;
AFUA_4G04300) [Aspergillus nidulans FGSC A4]
Length = 272
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L +I++++ LVAVSK+ + I + +
Sbjct: 21 TLLANLASVTSRIQSASSKLPL-PKEPRLVAVSKLKPASDILALHNPPTAHSHFGENYLQ 79
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKV----SEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ + ++ FIG LQSNK + +L+ V S +K L +++
Sbjct: 80 ELQEKARLLPPTIKWHFIGGLQSNKCVSLARDTRALWAVESVDSEKKATLLDKGWGERKA 139
Query: 118 RF-----LPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCI------- 163
L V++QVNT E KSG+ P + + + +L ++GLM I
Sbjct: 140 EMGGEEKLRVFVQVNTSGEENKSGVDPGEEVVRLCRFIMDKCPRLRLQGLMTIGAIARSK 199
Query: 164 PPAMGNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L + + L +LSMGM+ DFE AIA G+ VR+G+ I
Sbjct: 200 ATTAETENEDFICLKQARERVNEALGLEGDARLELSMGMSEDFEGAIALGSDEVRVGTTI 259
Query: 215 FGERPCQ 221
FG+RP +
Sbjct: 260 FGDRPPK 266
>gi|67541707|ref|XP_664621.1| hypothetical protein AN7017.2 [Aspergillus nidulans FGSC A4]
gi|40742473|gb|EAA61663.1| hypothetical protein AN7017.2 [Aspergillus nidulans FGSC A4]
Length = 349
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L +I++++ LVAVSK+ + I + +
Sbjct: 98 TLLANLASVTSRIQSASSKLPL-PKEPRLVAVSKLKPASDILALHNPPTAHSHFGENYLQ 156
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKV----SEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ + ++ FIG LQSNK + +L+ V S +K L +++
Sbjct: 157 ELQEKARLLPPTIKWHFIGGLQSNKCVSLARDTRALWAVESVDSEKKATLLDKGWGERKA 216
Query: 118 RF-----LPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCI------- 163
L V++QVNT E KSG+ P + + + +L ++GLM I
Sbjct: 217 EMGGEEKLRVFVQVNTSGEENKSGVDPGEEVVRLCRFIMDKCPRLRLQGLMTIGAIARSK 276
Query: 164 PPAMGNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L + + L +LSMGM+ DFE AIA G+ VR+G+ I
Sbjct: 277 ATTAETENEDFICLKQARERVNEALGLEGDARLELSMGMSEDFEGAIALGSDEVRVGTTI 336
Query: 215 FGERPCQ 221
FG+RP +
Sbjct: 337 FGDRPPK 343
>gi|50304253|ref|XP_452076.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641208|emb|CAH02469.1| KLLA0B12265p [Kluyveromyces lactis]
Length = 258
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 21/232 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
Q K KI +A +V L+AVSK + I++ G F EN +QE K
Sbjct: 30 YQTMKDKINATAQEVG--NVNVELLAVSKYKPAADIKILYDYGVRHFGENYVQEMITKSE 87
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SREKTASLLSLEMIKQSRFLP 121
D++ FIG LQSNK ++ + ++ + K + + +
Sbjct: 88 --ILPQDIKWHFIGGLQSNKCKDLAKIANLYSVETVDSLKKAKKLEEARGKWNPDAPVIT 145
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC--RQKYQLNVEGLMCIPPAM-----GNPKPHF 174
+Q+NT E QKSG+ ++ ++ +++ GLM + F
Sbjct: 146 CNVQINTSGEEQKSGLFAEVEVYSIVEYLIKEAKHVSLNGLMTVGSWDVSHSGNEENQDF 205
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E ++ LSMGMT DF AI G + VRIG+ IFG RP +
Sbjct: 206 ARLVEWKKKLDAKYGLDLKLSMGMTADFRQAIKQGTSEVRIGTAIFGSRPLK 257
>gi|229918555|ref|YP_002887201.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
gi|229469984|gb|ACQ71756.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
Length = 217
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 21/225 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ + I + +L+AV+K V + G F EN+
Sbjct: 1 MSISDNVKQVQSIISSHVQEV-----EPTLIAVTKSVGVDVANALYAEGIRDFGENRPDA 55
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + K D + FIG+LQ+ KV +I+ I ++ R A+ + + + +
Sbjct: 56 LLEKVEGMPK--DARFHFIGTLQTRKVRQIIDYVAAIHSLDRLSLAAEIDK---RANGTI 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ C+Q + + GLM + P + F L
Sbjct: 111 DCFVQVNTSGEDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEESVLRETFRRL 170
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
+ E K T+LSMGM+ D+ +AI GA+ VRIG+ +
Sbjct: 171 RHLRDEVKANAYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVL 215
>gi|331696625|ref|YP_004332864.1| hypothetical protein Psed_2811 [Pseudonocardia dioxanivorans
CB1190]
gi|326951314|gb|AEA25011.1| protein of unknown function UPF0001 [Pseudonocardia dioxanivorans
CB1190]
Length = 246
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 104/234 (44%), Gaps = 18/234 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +++I ++ A R V+++AV+K + ++ + + G F EN+ QEA
Sbjct: 8 LARRLAQVRERIASACAAAGRDPGEVAMLAVTKTIPARDVVLLHGLGLRDFGENRAQEAA 67
Query: 63 KKWIPLRKEWD-------VQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TASLL 109
K + + + + F+G LQ NK + +E+V + +
Sbjct: 68 AKVVEVAELLGNPPAGAAPRWYFVGGLQRNKARLVAPWVTRVESVDSARLADALDAQARR 127
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + ++ LPV +Q + + + G+ + L ++GLM + P +
Sbjct: 128 AADDGERDGPLPVLLQYSVDGDPGRGGVARDGLLTLASHVAGCAGLRLDGLMAVAPLHAD 187
Query: 170 PKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+ F ++ A T LS GM+ D ++AI G+T VR+G+ + GER
Sbjct: 188 PEEAFADVAAAAEVLRAEHPAATVLSAGMSGDLDVAIRHGSTCVRVGTALVGER 241
>gi|167755110|ref|ZP_02427237.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
gi|237733463|ref|ZP_04563944.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705160|gb|EDS19739.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
gi|229383498|gb|EEO33589.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 213
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 11/210 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
E + + + LVA +K V ++I G F EN++Q +K+
Sbjct: 5 EQAVKNILKSVGNAKLVAATKYVGIEEINELEKLGVKYFGENRVQAFLEKYEKYHGAQ-- 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG+LQ NKV I+ +I ++ + + K +P+ IQVN E K
Sbjct: 63 EFHMIGTLQPNKVKYIIDKVSLIHSIDSYSLIKEVEKQAKKHDLKMPILIQVNVAKEESK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--HFYLLSEIARECK------- 185
G + +D ++ L V+GLM + P + + +F E+ +
Sbjct: 123 HGFAVEEIEDVFDYLKECPHLIVKGLMMMAPHIDSNDTAVYFKQTKELFDQLNCKYSEFE 182
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+T+LSMGM+ D+ A+ GAT +R+GS +F
Sbjct: 183 MTELSMGMSNDYHEALKYGATMIRVGSALF 212
>gi|145223580|ref|YP_001134258.1| alanine racemase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145216066|gb|ABP45470.1| alanine racemase domain protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 20/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + ++ +A A R + L+ V K + + G FAE++ QEA
Sbjct: 9 LRAALDALRVRLARAAESAGRDVAEIELLPVIKFFPASDVLALYRLGCDAFAESRDQEAT 68
Query: 63 KKWIPL------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----- 111
K + R++ ++ +G +Q NK + +V K + L
Sbjct: 69 AKIEDVARVVGSREDTPIRWHMVGRIQRNKARSVAEWAYAAHSVDSVKVVAALERSASTA 128
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAM 167
E +++ L V+ Q++ + + G+ + T+ LC + G+M IPP
Sbjct: 129 LEEGRRTEPLRVFAQLSLDGDEARGGVDVDATERVDELCAAMDRAGGLTFAGMMAIPPLG 188
Query: 168 GNPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+P F L + + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 189 ADPGEAFARLRQERDRVQRDYEQRLGLSAGMSGDLEAAVRHGSTCVRVGTALMGSRP 245
>gi|258577879|ref|XP_002543121.1| hypothetical protein UREG_02637 [Uncinocarpus reesii 1704]
gi|237903387|gb|EEP77788.1| hypothetical protein UREG_02637 [Uncinocarpus reesii 1704]
Length = 297
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/247 (25%), Positives = 94/247 (38%), Gaps = 33/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +I + + V LVAVSK+ + I S + +
Sbjct: 49 LLANLSSVTSRISAAT-----TGNPVRLVAVSKLKPASDILALHSPPTSHIHFGENYLQE 103
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----------LLSL 111
+++ FIG LQSNK + + V T +
Sbjct: 104 LLEKSKILPPEIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTQKKASLLDKGWGERSNS 163
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCI------- 163
+ +Q L V++QVNT E KSG+ P+ + + + +L ++GLM I
Sbjct: 164 QEGQQQEPLRVFVQVNTSGEESKSGVEPSNAVELCRFIQEKCPRLKLQGLMTIGAIARSK 223
Query: 164 PPAMGNPKPHFYLLSEIAR----ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L E E +LSMGM+ DFE AIA G+ VR+GS I
Sbjct: 224 ATTPETQNEDFVCLRETRDNVCQELGWEGEDKLELSMGMSEDFEGAIAMGSNEVRVGSTI 283
Query: 215 FGERPCQ 221
FG RP +
Sbjct: 284 FGARPPK 290
>gi|171689970|ref|XP_001909924.1| hypothetical protein [Podospora anserina S mat+]
gi|170944947|emb|CAP71058.1| unnamed protein product [Podospora anserina S mat+]
Length = 268
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 67/250 (26%), Positives = 100/250 (40%), Gaps = 35/250 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQEA 61
L ++LQ K KI +A+ RP V LVAVSK+ + I + +
Sbjct: 17 LISQLQGVKDKI--AAVAKGRP---VRLVAVSKLKPANDILALHEAPETKHLHFGENYSQ 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----------SREKTASLLS 110
+ +Q FIG LQS + + ++ + + + +
Sbjct: 72 ELTQKAELLPRTIQWHFIGGLQSKHTKNLAKIPNLFCISSIDTLKKAELLDKYRGDQIAA 131
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPA-- 166
+ V++QVNT E KSG P Q K + + L + GLM I
Sbjct: 132 ATNPDIFGKIKVHVQVNTSGEESKSGCAPGQETVKLCKKIENECPNLELLGLMTIGAIAR 191
Query: 167 -----MGNPKPHFYLLSE----IARECKL-----TKLSMGMTRDFELAIASGATSVRIGS 212
N F +L E + +E L +LSMGM+ DFE AIA G+ VR+GS
Sbjct: 192 SRETTPENENEDFQVLREQRDLVRKELGLGEERLLELSMGMSEDFEGAIAMGSDEVRVGS 251
Query: 213 GIFGERPCQT 222
IFG R ++
Sbjct: 252 TIFGARGPKS 261
>gi|198282580|ref|YP_002218901.1| alanine racemase domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665726|ref|YP_002424770.1| conserved hypothetical protein TIGR00044 [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247101|gb|ACH82694.1| alanine racemase domain protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517939|gb|ACK78525.1| conserved hypothetical protein TIGR00044 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 222
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 17/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L + +I + L+A SK V + +R A + G F EN LQE
Sbjct: 1 MSIAERLAHVQGEIADHPPQC--------LLAASKHVTAATLRDAYALGLRHFGENFLQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K LR + FIG +Q NK + + FD +E+V R + L
Sbjct: 53 ALDKQTALRDLDGIIWHFIGRIQRNKTALLARHFDWVESVDR-PLIAERLHAARAGMEPL 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSE 179
V I+V E K G P + ++ + L + GLM + P + F ++E
Sbjct: 112 NVLIEVAISGEETKGGCAPEDVPELALVISRLSHLRLRGLMALVHPQPELAEADFRRMAE 171
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMG + D+ A+ GAT +R+G+ +FG R
Sbjct: 172 LFLALRQTQVHADLDTLSMGTSADYLQALQQGATEIRLGTILFGAR 217
>gi|254431565|ref|ZP_05045268.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
gi|197626018|gb|EDY38577.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
Length = 220
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 4/205 (1%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
AI A+ P S L+AVSK + IR A++ GQ F E++LQEA K L +
Sbjct: 3 AIRAQLPP-SCRLLAVSKGHPAAAIRAAVAAGQRSFGESRLQEAMAKQDALADLGPLDWH 61
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQ+NK ++ F I ++ A L+ ++ R V QV + K+G
Sbjct: 62 FIGRLQANKARGVLRRFGTIHSLDSVALAQRLARIAAEEERSPAVLFQVKFRPDPAKTGF 121
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMT 194
P + L GLM I P L E +A E L + SMGM+
Sbjct: 122 EPEALRARWQELSALPALRPVGLMTIAPMGLEAAERRALFQECAALAAELGLPERSMGMS 181
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D+ A+ +G+T VR+GS +FG+RP
Sbjct: 182 GDWPEAVTAGSTWVRLGSSLFGDRP 206
>gi|255084663|ref|XP_002508906.1| predicted protein [Micromonas sp. RCC299]
gi|226524183|gb|ACO70164.1| predicted protein [Micromonas sp. RCC299]
Length = 249
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 94/224 (41%), Gaps = 25/224 (11%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
S A LVAVSK +++R GQ F EN +QE +K + D
Sbjct: 20 RSTARASTNPA--RLVAVSKTKPVEQLRECYDAGQRCFGENYVQEIVEKAPQMPP--DTV 75
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-----------VYI 124
FIG LQSNKV +V+ + V T L + FL V +
Sbjct: 76 WHFIGHLQSNKVKALVTGVPSLAVVETVDTVKLANKLNTAVGEFLEERARVGAGKLGVMV 135
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIAR 182
QVNT E K G+ PN + + L GLM I P + +F L+
Sbjct: 136 QVNTSGEESKFGVEPNDCLPLARHIRDECSNLAFRGLMTIGMPDYTSRPENFQTLAACRD 195
Query: 183 E----CKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ DFE AI G+ +VR+GS IFG R
Sbjct: 196 EVCAGLGLDAKDVELSMGMSGDFESAIEMGSDNVRVGSTIFGAR 239
>gi|307202202|gb|EFN81689.1| Proline synthetase co-transcribed bacterial-like protein protein
[Harpegnathos saltator]
Length = 248
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 24/242 (9%)
Query: 4 GNKLQVFKQKI-ENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L++ +KI ++ A + LVAVSK+ + I GQ F EN + E
Sbjct: 5 AANLKLVYEKILRAASKKASEHRYFEPRLVAVSKLQSVESILSVYKSGQTHFGENYVNEL 64
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LE 112
+K + +++ FIG+LQ NKV++I+++ ++ + +
Sbjct: 65 VEKASHPQILQYGTEIKWHFIGNLQRNKVNKILNVPNLYIIETVDNERLANMLNNLWVKF 124
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCI-------- 163
L + +Q+NT E +K+G + + L GLM I
Sbjct: 125 RKNDDTKLNIMVQINTSQEKEKNGCDMVEAPALVKHIINNCPNLKFIGLMTIGMFGYDIA 184
Query: 164 ----PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P + K + +++ + K +LSMGM+ D+E AI G+TSVR+GS IFG RP
Sbjct: 185 NGPNPDFINLLKCRETICNKLEIDFKNIELSMGMSNDYEHAIELGSTSVRVGSAIFGIRP 244
Query: 220 CQ 221
+
Sbjct: 245 QK 246
>gi|157150424|ref|YP_001449979.1| hypothetical protein SGO_0676 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075218|gb|ABV09901.1| conserved hypothetical protein TIGR00044 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 223
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + A RP++SVS+VAV+K VDS + + G EN++ +
Sbjct: 1 MDLQKNKYQVFAAVAEATRKANRPENSVSIVAVTKYVDSSTAKELVKTGVKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ ++ ++ IG+LQ KV E+++ D + K A + + +
Sbjct: 61 FLEKY-QYLRDEELTWHLIGTLQRRKVKEVINYVDYFHALDSLKLAEEIEK---RAEHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
++QVN E K G N+ + + + + + G+M + P + +
Sbjct: 117 KCFLQVNVSGEESKHGFAVNEIEAVLPALEKLEHIEIVGIMTMAPIDAGEEDLEKIFQAT 176
Query: 179 -EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ ++ + +++SMGM+RDF AIA+G+T VRIG+ F
Sbjct: 177 HELQKKLQNKQITNMPFSEISMGMSRDFATAIANGSTFVRIGTSFF 222
>gi|256832921|ref|YP_003161648.1| alanine racemase domain-containing protein [Jonesia denitrificans
DSM 20603]
gi|256686452|gb|ACV09345.1| alanine racemase domain protein [Jonesia denitrificans DSM 20603]
Length = 253
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 24/237 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA----- 61
L +I+N+A A R ++L+ +K + I A+ + + ++
Sbjct: 14 LTTVSTRIDNAAHTAHRNPADITLLLATKTQPTPTITDAIHTYRHLVTTQQITNRPLAIG 73
Query: 62 ------KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS----REKTASLLSL 111
+ IG LQSNK++ ++ +
Sbjct: 74 ENRVQELSNKAADLSSLRLSAHLIGPLQSNKINHTLTALAHHADAWVDSVSTPQLATKLN 133
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA----- 166
+ + L V IQ+N + G P+ L + G M I P
Sbjct: 134 DRWSHTHPLNVLIQINVSGAPTQHGCPPSDALTLANHIHTLPHLQLRGFMAIGPRTTDQT 193
Query: 167 ---MGNPKPHFYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +A K T LSMGM+ D ++A+ GAT VR+G+ +FG RP
Sbjct: 194 LLRDSYHSVAAIRDAALAEGHKHATHLSMGMSNDLDIAVECGATIVRVGTAVFGARP 250
>gi|303236490|ref|ZP_07323077.1| pyridoxal phosphate enzyme, YggS family [Prevotella disiens
FB035-09AN]
gi|302483341|gb|EFL46349.1| pyridoxal phosphate enzyme, YggS family [Prevotella disiens
FB035-09AN]
Length = 223
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L K + + V L+A+SK ++ + A + GQ IF E+ QE
Sbjct: 3 DVATNLHEVKDGL----------PEGVRLIAISKFHPNEYLEAAYNEGQRIFGESHEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
D++ FIG LQ+NKV I +IE V K ++ + K +R +
Sbjct: 53 SA--KASTLPKDIEWHFIGHLQTNKVKYIAPYISMIEAVDSFKLLKEINKQAAKHNRIIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++++ E+ K G + + + R+ +++ GLM + + + +++
Sbjct: 111 ILLELHIAEEVSKYGFKIEECRQLLEEGAWRELKNVHISGLMMMASNTDDEQQIRKEMTQ 170
Query: 180 ------------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A + + S GM+ D+ +AI +T +R+G+ IFG R
Sbjct: 171 AANFFDEVKEKYFANDPAFKERSWGMSNDYPIAIECRSTMIRVGTKIFGPRIY 223
>gi|195037419|ref|XP_001990158.1| GH18384 [Drosophila grimshawi]
gi|193894354|gb|EDV93220.1| GH18384 [Drosophila grimshawi]
Length = 249
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 67/239 (28%), Positives = 105/239 (43%), Gaps = 30/239 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
LQ+ ++IE +LA R + LVAVSK ++ + A + GQ F EN +QE
Sbjct: 10 LQLVLKRIET--VLASR-PKEIKAGKPLLVAVSKTKPAESVIEAYNAGQRHFGENYVQEL 66
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE------ 112
+K + + D++ IG LQ NK+++++ L ++ + + L+
Sbjct: 67 VEKSQHPQILAQCPDIKWHLIGHLQGNKINKVLKLPNLHMIQTVDSEKLADKLDAAWSKL 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA----- 166
S L + +QVNT E KSGI + L G+M I
Sbjct: 127 EPPPSEPLRILVQVNTSEEDVKSGIDASAAPSLYQYISSNLKHLQPVGIMTIGAYGFDYS 186
Query: 167 MGNPKPHFYLLSEIARECKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
G L++ A C+ L SMGM+ D++ AI G+T VR+G+ IFG R
Sbjct: 187 NGPNPDFVSLMAVHADICQANALPAEALQVSMGMSNDYDRAIEMGSTIVRVGTAIFGHR 245
>gi|269957163|ref|YP_003326952.1| alanine racemase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305844|gb|ACZ31394.1| alanine racemase domain protein [Xylanimonas cellulosilytica DSM
15894]
Length = 245
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 104/238 (43%), Gaps = 22/238 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-------GQVIFAE 55
+ +++ + + +++A A R V ++ +K D+ + A++ G V+ E
Sbjct: 8 IASRIAAVRSRADDAARTAGRDPREVRVLLATKTQDAATVLDAVAAAAGTPGWGPVLVGE 67
Query: 56 NKLQEAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
N++QE K L ++ IG LQSNKV+ ++ +ETV A+ L+
Sbjct: 68 NRVQELVAKAPALAPLVAAGTVEVHLIGHLQSNKVNPALATSSCVETVDSLAIATALATR 127
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGN 169
+ R L V +QVN E KSG+ P L + G M I
Sbjct: 128 CERAGRVLDVMVQVNVSGEESKSGVAPESAVALAGEVAALPGLRLVGFMTIGARSRDDAV 187
Query: 170 PKPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L I + +LSMGMT D E AIA GAT VR+G+GIFG R
Sbjct: 188 VRAGYARLRAIRDAVVGSGAPGTAEARELSMGMTDDLEAAIAEGATIVRVGTGIFGPR 245
>gi|120404490|ref|YP_954319.1| alanine racemase domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119957308|gb|ABM14313.1| alanine racemase domain protein [Mycobacterium vanbaalenii PYR-1]
Length = 275
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 17/230 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++ +A A R + L+ V+K + + G F E++ QEA K
Sbjct: 13 LTALRLRVARAAEAAGRDAGDIELLPVTKFFPASDVVALHRLGCSAFGESRDQEAAAKVE 72
Query: 67 PL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQS 117
+ ++ +G +Q NK + +V K + L + ++
Sbjct: 73 EVGGLVGNDPIRWHMVGRIQRNKARSVAQWAYAAHSVDSPKVIAALDRAAEEALDDGRRP 132
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNPKPHF 174
L VY+QV+ + + G+ T LC GLM IPP + F
Sbjct: 133 APLRVYLQVSLDGDEARGGVDVAATDRIDDLCGAVDSARGLEFVGLMAIPPLNADAGEAF 192
Query: 175 YLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 193 ARLERERDRVQRRFQQRLGLSAGMSGDLEEAVRHGSTCVRVGTALLGSRP 242
>gi|261749299|ref|YP_003256984.1| hypothetical protein BPLAN_213 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497391|gb|ACX83841.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 219
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
S+ ++AVSK + I G F EN +QE +K+ D++ IG +Q
Sbjct: 16 PKSIKILAVSKNQNISSIERLYQIGHRDFGENYVQEMIQKYQK--LPKDIRWHMIGVIQK 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+ IV +I ++ + + +++ E K +R + +Q+ EI K+GI + +
Sbjct: 74 NKLKSIVPFIHLIHSIQKIEHLQIINKEAFKHNRVIKCLLQIKICNEINKAGITNQEADN 133
Query: 145 FVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLSEIAR-------ECKLTKLSMGMTR 195
+ + NV+ GLM + G+ + + + + + LSMGM+
Sbjct: 134 IMNNNIYHHMKNVKIIGLMGMASLHGSTQKIRQEFYSLKKLYNEYQRKYQHHILSMGMSN 193
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ +AI G+T +R+G+ +FG+R
Sbjct: 194 DYPIAIEYGSTHIRLGTSLFGKR 216
>gi|321261900|ref|XP_003195669.1| hypothetical protein CGB_H2200W [Cryptococcus gattii WM276]
gi|317462143|gb|ADV23882.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 264
Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats.
Identities = 71/254 (27%), Positives = 106/254 (41%), Gaps = 40/254 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + + + ++A +P LVAVSK+ + I+ G F EN +QE
Sbjct: 16 DLKENIAAVQYDVAHAAGAGAKP----RLVAVSKLKPASDIKALYDAGHRHFGENYIQEM 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---MIKQSR 118
D++ FIGSLQSNK S+ ++ + L+ ++
Sbjct: 72 VD--KAAVLPEDIKWHFIGSLQSNKSKLAASVPNLFILETLSSIKVADLLQKSLPPSRTS 129
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT-----------KDFVILCRQKYQLNVEGLMCIPPA- 166
L VY+QVNT E KSG+ P + V + + L + G+M I
Sbjct: 130 KLNVYLQVNTSGEDSKSGLSPLPSSTADSKSTELVDLAVHVIEKCPGLKLLGIMTIGSWD 189
Query: 167 ----MGNPKPHFYLLS----EIARECKLT-----------KLSMGMTRDFELAIASGATS 207
P P F L E+A+ +LSMGM+ DF AI G++S
Sbjct: 190 ASHDPTKPNPDFECLKRTRAELAKVLAEKGVPAAPREDELELSMGMSADFVQAIKEGSSS 249
Query: 208 VRIGSGIFGERPCQ 221
VR+G+ IFGERP +
Sbjct: 250 VRVGTRIFGERPKK 263
>gi|108804324|ref|YP_644261.1| hypothetical protein Rxyl_1487 [Rubrobacter xylanophilus DSM 9941]
gi|108765567|gb|ABG04449.1| Protein of unknown function UPF0001 [Rubrobacter xylanophilus DSM
9941]
Length = 240
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L++ ++ I + + R +D ++ +K + ++I G + EN+ Q+
Sbjct: 10 IRERLKLVQENISRALERSGR-RDRPRVLVATKYYEPEQISALREAGVRLVGENRAQDLI 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + FIG LQ K +V +I +V + L+ + V
Sbjct: 69 RKQELFGDAF--EWHFIGHLQRRKAKLVVPRVSLIHSVDSVRLVEELARRAPEGG--TDV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN E K G+ P + + + ++ V G M + P + +P+ Y+ +++
Sbjct: 125 LVQVNVSGEESKYGVSPGEVERLLEAAAASGKVRVRGFMTLAPLVEDPEDVRYVFAQLRE 184
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
L++LSMGM+ D+ +A+ GAT VR+G +
Sbjct: 185 IRDRLRGSWRPHFDLSELSMGMSNDYPVAVEEGATLVRVGRTL 227
>gi|256425243|ref|YP_003125896.1| alanine racemase [Chitinophaga pinensis DSM 2588]
gi|256040151|gb|ACU63695.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
Length = 225
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 32/237 (13%)
Query: 1 MSLGNKL---QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ L Q ++++ + LVAVSK+ + I+ GQ IF EN
Sbjct: 1 MSV--NLPAFQKINEQLK---------PYNAKLVAVSKIKPASDIQALYDAGQRIFGENY 49
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QE ++ D++ FIG LQSNKV I ++ V K +S + K +
Sbjct: 50 VQELQE--KQPLLPADIEWHFIGHLQSNKVKYIAPFVSMVHAVDSLKLLEEISKQAAKHN 107
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNPKPH 173
R + +QV+ E K G+ + + + +Q+ + + GLM + + +
Sbjct: 108 RMIRCLLQVHIATEETKFGLDEKELLELLEAYKQQEARFANIRIAGLMGMATNTDDMQQV 167
Query: 174 FYLLSEIA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LT+LS+GM+ D+ +A+ G+T VRIGS +FG R
Sbjct: 168 RNEFRHLHALQQNMKQRFFSDTDALTELSVGMSGDYTIALEEGSTMVRIGSMLFGAR 224
>gi|315041367|ref|XP_003170060.1| YggS family pyridoxal phosphate enzyme [Arthroderma gypseum CBS
118893]
gi|311345094|gb|EFR04297.1| YggS family pyridoxal phosphate enzyme [Arthroderma gypseum CBS
118893]
Length = 296
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 65/275 (23%), Positives = 96/275 (34%), Gaps = 56/275 (20%)
Query: 3 LGNKLQVFKQKIENSAILAKRP---------------------KDSVSLVAVSKMVDSKK 41
L L ++I ++ SV LVAVSK+ +
Sbjct: 18 LIANLSSVSKRIAAASSSRNHNETNTSASSVTSAPNNDSNSPAASSVRLVAVSKLKPASD 77
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI---- 97
I S + + +++ FIG LQSNK + +
Sbjct: 78 ILALHSPPTSHLHFGENYMQELLEKSKALPPEIRWHFIGGLQSNKCVTLAREVRGLWAVE 137
Query: 98 -------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-- 142
R + S +R L V++QVNT E KSGI P +
Sbjct: 138 SVDTEKKASLLDKGWGERAEFKDKDSDADEHANRPLRVFVQVNTSGEENKSGIQPGEPTL 197
Query: 143 KDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECKLT---- 187
+ + + +L ++GLM I N F L + + L
Sbjct: 198 ELCRYIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLSLKGEDT 257
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AI G+ VR+GS IFG RP +
Sbjct: 258 LELSMGMSNDFEGAITMGSNQVRVGSTIFGARPPK 292
>gi|227876863|ref|ZP_03994972.1| alanine racemase domain protein [Mobiluncus mulieris ATCC 35243]
gi|227842760|gb|EEJ52960.1| alanine racemase domain protein [Mobiluncus mulieris ATCC 35243]
Length = 281
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 67/271 (24%), Positives = 104/271 (38%), Gaps = 53/271 (19%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +L ++++ +A + R V ++ VSKM I+ A++ G F EN+ Q
Sbjct: 1 MTGFQERLVGIQERVAAAARASGREPRDVRILPVSKMHPISMIQAAMAAGAREFGENRPQ 60
Query: 60 EAKKKWIP------------------------------------------LRKEWDVQLR 77
+ K K +
Sbjct: 61 DLAAKAQELGANLGQSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWV 120
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG+LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+
Sbjct: 121 MIGNLQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNISGEAVKHGV 180
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLSEIARE-----CKLT 187
P DF L + G M + F L I + +
Sbjct: 181 EPGVALDFAGRVAALPGLRLTGFMGVAAPLSVVGESGVHEAFARLRAIRDAAVVSIPEAS 240
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE+AI G+T VR+GSG+FG+R
Sbjct: 241 GLSMGMSGDFEIAIVEGSTCVRLGSGLFGQR 271
>gi|262039205|ref|ZP_06012525.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia goodfellowii
F0264]
gi|261746821|gb|EEY34340.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia goodfellowii
F0264]
Length = 227
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 14/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K+ I + V ++ V+K + ++ + + G F ENK Q +
Sbjct: 8 IHQNYEKIKEDI----KKYSPYPEKVKILFVTKYFNFEEQKKIIDMGYNYFGENKAQVYR 63
Query: 63 KKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K +++ FIG LQ NK+ I+ ++I ++ + ++ + + +R +
Sbjct: 64 DKVKNFSEDKYKNLKWDFIGRLQKNKIKYIIKNVNLIHSIDSYELLEEINKKAAENNRIV 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
IQ+N E K+G+ + + ++G M + P +F+ +
Sbjct: 124 NGLIQINISKEESKTGVYVESFEKEYEKYFSMDNVKIKGFMTMAPLEAESHEIKEYFFNM 183
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + L +LSMGM+ D+ A+ SG+T +RIGS +F
Sbjct: 184 LRLKEKYEKKYDYLDELSMGMSNDYIEALESGSTIIRIGSKLF 226
>gi|296125213|ref|YP_003632465.1| alanine racemase domain protein [Brachyspira murdochii DSM 12563]
gi|296017029|gb|ADG70266.1| alanine racemase domain protein [Brachyspira murdochii DSM 12563]
Length = 231
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 15/231 (6%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAEN 56
M+ + + + + I VSLVAVSK + I+ LS E+
Sbjct: 1 MNRDEILKRYNLIEDNINRIKEKYNIN-YDVSLVAVSKYSSIETIKEFLSLNIDLPLGES 59
Query: 57 KLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K Q + + + + + +V+ FIG +QSNKV IV D+I++V + A ++ E +K
Sbjct: 60 KAQSLRDRVGEIGKIKDNVKWHFIGRIQSNKVKYIVKYADLIQSVDSIEIAECINKEALK 119
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
++ + +Q N E+QK G + + ++V+GLM I +
Sbjct: 120 NNKVQDILLQFNISDEVQKGGFTADDYIGVYENIMKMPNISVKGLMAIGKDTEDSYVIEE 179
Query: 176 LL-------SEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
EI ++ L+ LSMGM+ D+ELAI G+ VRIGS G
Sbjct: 180 EFEHLNLIYKEINKKYNNTLSILSMGMSSDYELAIKHGSNMVRIGSSFLGN 230
>gi|326483235|gb|EGE07245.1| alanine racemase [Trichophyton equinum CBS 127.97]
Length = 301
Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats.
Identities = 65/279 (23%), Positives = 96/279 (34%), Gaps = 60/279 (21%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-------------------------VSLVAVSKMV 37
L L ++I ++ + V LVAVSK+
Sbjct: 18 LIANLSSVSKRIAAASNSRNNHHNETSTSSNPSPAAVTSTSDSNSPAAPPVRLVAVSKLK 77
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
+ I S + + +++ FIG LQSNK + +
Sbjct: 78 PASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRWHFIGGLQSNKCVTLAREVRGL 137
Query: 98 -----------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
R + S R L V++QVNT E KSGI P
Sbjct: 138 WAVESVDTEKKASLLDKGWGERAEFKQKESEAGEPLDRRLRVFVQVNTSGEENKSGIQPG 197
Query: 141 QT--KDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECKLT 187
+ + + + +L ++GLM I N F L + + L
Sbjct: 198 EPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLSLK 257
Query: 188 -----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 258 GEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 296
>gi|302667847|ref|XP_003025502.1| hypothetical protein TRV_00264 [Trichophyton verrucosum HKI 0517]
gi|291189616|gb|EFE44891.1| hypothetical protein TRV_00264 [Trichophyton verrucosum HKI 0517]
Length = 303
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/281 (22%), Positives = 95/281 (33%), Gaps = 62/281 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS---------------------------VSLVAVSK 35
L L ++I ++ ++ V LVAVSK
Sbjct: 18 LIANLSAVSKRIAAASNSRNNHNETSPSPSAGPVAATSTSDSNNNNSSAAPPVRLVAVSK 77
Query: 36 MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD 95
+ I S + + +++ FIG LQSNK +
Sbjct: 78 LKPVSDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRWHFIGGLQSNKCVTLAREVR 137
Query: 96 VI-----------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+ R + + R L V++QVNT E KSGI
Sbjct: 138 GLWAVESVDTEKKASLLDKGWGERAEFKQKENDANQPLDRRLRVFVQVNTSGEENKSGIQ 197
Query: 139 PNQT--KDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECK 185
P + + + +L ++GLM I N F L + +
Sbjct: 198 PGEPTLELCRFIRENCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLS 257
Query: 186 LT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 258 LKGEETLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 298
>gi|327298199|ref|XP_003233793.1| alanine racemase [Trichophyton rubrum CBS 118892]
gi|326463971|gb|EGD89424.1| alanine racemase [Trichophyton rubrum CBS 118892]
Length = 301
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 97/281 (34%), Gaps = 64/281 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS---------------------------VSLVAVSK 35
L L ++I ++ R S V LVAVSK
Sbjct: 18 LIANLSSVSKRIAAAS--NGRNNHSETSPSSSAGPVAATSTSDSNNSSAAPPVRLVAVSK 75
Query: 36 MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD 95
+ + I S + + +++ FIG LQSNK +
Sbjct: 76 LKPASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRWHFIGGLQSNKCVTLAREVR 135
Query: 96 VI-----------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+ R + + R L V++QVNT E KSGI
Sbjct: 136 GLWAVESVDTEKKASLLDKGWGERAEFKQKENDANGPSDRRLRVFVQVNTSGEENKSGIQ 195
Query: 139 PNQT--KDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECK 185
P + + + + +L ++GLM I N F L + +
Sbjct: 196 PGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLS 255
Query: 186 LT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 256 LKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 296
>gi|328676168|gb|AEB27038.1| hypothetical protein FNFX1_0090 [Francisella cf. novicida Fx1]
Length = 222
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ Q I++ A L+AVSK KI S GQ+ F EN QE +
Sbjct: 7 IQKSYTSIMQNIDSKA----------RLLAVSKYQVIDKIEYLASLGQLDFGENYFQELE 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + FIGSLQS K+ IV I++V + + + ++ + V
Sbjct: 57 QKAQKLPHL---RWHFIGSLQSRKIKHIVRYASSIQSVENIEHLEKIDKAAGQIAKIVDV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
++Q+N +I KSG Q ++ V + L + GLMCIP +P+ F +
Sbjct: 114 FLQINIDDDINKSGFESTQLEEVVASIMKAKSFINLKIVGLMCIPSKSNSPEKSFAKMKH 173
Query: 179 -------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 174 FFDTVNSRLNDDLKLSRLSMGMSADYTLAIQYGSTDVRVGSSLFGAR 220
>gi|257126827|ref|YP_003164941.1| alanine racemase [Leptotrichia buccalis C-1013-b]
gi|257050766|gb|ACV39950.1| alanine racemase domain protein [Leptotrichia buccalis C-1013-b]
Length = 227
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 14/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + + V ++ VSK ++ ++ + + G F EN+ Q +
Sbjct: 8 IHQNYEKILENV----KKYSPYPEKVKILFVSKYLNVEEHKAVIDMGYDYFGENRAQLYR 63
Query: 63 KKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K +++ FIG LQ NK+ I++ +++ ++ + ++ + I+ ++ +
Sbjct: 64 DKLNEFSDEKYKNIKWDFIGRLQKNKIKYIINSVNLVHSIDSYQLLEEINKKAIENNKTI 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
IQ+N E K+G+ K + + G M + P + +F +
Sbjct: 124 SGLIQINVSREESKTGVYIEDFKKDSEKYFSMSNVKIAGFMTMAPFDASEYEIDNYFSKM 183
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E + +T+LSMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 184 RELKEEYEKKYDYITELSMGMSNDYIEALKNGATIIRIGSKLF 226
>gi|261879479|ref|ZP_06005906.1| K+ uptake protein [Prevotella bergensis DSM 17361]
gi|270333904|gb|EFA44690.1| K+ uptake protein [Prevotella bergensis DSM 17361]
Length = 224
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ + V LVA+SK ++ I A + GQ IF E++ QE
Sbjct: 4 DVAKNLKEVL----------GNLPEGVQLVAISKFHPNEYIEAAYAAGQRIFGESREQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K D+Q FIG LQ NKV I +IE+V K ++ + K +R +
Sbjct: 54 RLKAEQ--LPKDIQWHFIGHLQGNKVKSIAPYISMIESVDTFKLMKEINKQAEKNNRVID 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++++ E K G + + +Q + + GLM + + + +++
Sbjct: 112 ILLELHVADEETKFGFSFEACRSMLAEALWKQMANIRIRGLMMMASNVEDENQIASEMNK 171
Query: 180 IARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A ++ S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 172 AADFFDEVKRDYFADADYFSERSWGMSHDYQIAVKCRSTMVRVGTTIFGAR 222
>gi|210634169|ref|ZP_03298031.1| hypothetical protein COLSTE_01953 [Collinsella stercoris DSM 13279]
gi|210158916|gb|EEA89887.1| hypothetical protein COLSTE_01953 [Collinsella stercoris DSM 13279]
Length = 254
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 58/230 (25%), Positives = 107/230 (46%), Gaps = 17/230 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +++ + + R ++ +LVAVSK V ++ A+ G +F EN+ QE
Sbjct: 18 IAERREEILGRMDAALTASGRAREDATLVAVSKTVRVDEVVTAIDAGYRVFGENRPQELN 77
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR- 118
+K L D V+ IG+LQ+NK++ ++ +++ ++ A L+ +
Sbjct: 78 RKLEGLSLRPDVPPVRFDMIGNLQTNKINAVLGRVELVHSIGSLHLARALAARAERWLEA 137
Query: 119 -----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPK 171
+ I+VN E K G P++ + + + +EGLM + P +
Sbjct: 138 GELVAPQSILIEVNVSGEETKGGFAPSELRAAFGELQSLCGVRIEGLMTMAPRGDKDRAR 197
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E+ E L +LS GM+ DFE+A+ G+T VR+G +F
Sbjct: 198 ACFSGLRELRDELSRESGLPLRELSCGMSEDFEVALEEGSTIVRLGRVVF 247
>gi|322385900|ref|ZP_08059542.1| cell division protein YlmE [Streptococcus cristatus ATCC 51100]
gi|321270079|gb|EFX52997.1| cell division protein YlmE [Streptococcus cristatus ATCC 51100]
Length = 223
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q + R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MDFQVNKDLIFQNVAQIVEKENRLKDSVNIIAVTKYVDCETAKKLVDTGIKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ KE ++ IGSLQ KV ++++ D + K A ++ + +
Sbjct: 61 FLEKYHA-LKEENLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAQEINK---RADHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + + GLM + P + + + SE
Sbjct: 117 NCFLQVNISKEESKHGFLVEELDSVLPELAALENICIVGLMTMAPLEADHQELNQIFSE- 175
Query: 181 ARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIF 215
A + +L LSMGM+RD+ AIA+G+T VRIG+ F
Sbjct: 176 AHQLQLNLQSKQLKNMPFSDLSMGMSRDYPEAIANGSTYVRIGTAFF 222
>gi|269219750|ref|ZP_06163604.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
848 str. F0332]
gi|269210992|gb|EEZ77332.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
848 str. F0332]
Length = 299
Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + K+ +A A R +++VS++ +K + +++ AL G + N +Q+ +
Sbjct: 52 IAGRWESLRDKVAAAASRAGREENAVSILLAAKFQEPERVAAALRAGGSLIGHNYIQQLE 111
Query: 63 KKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-- 118
+ L + ++ IG +Q+NK + + D IETV K A+ L ++
Sbjct: 112 EGERALTELGAPFHRVHVIGHVQANKAGKAIRAADCIETVDSPKLAARLDRLQGERISAG 171
Query: 119 ----------FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
V IQVN+ + G+ P+ D L + GLM I
Sbjct: 172 ELRKDGSPLGPFDVMIQVNSAGSESQHGVDPSGVVDLAGAVADLPNLRLVGLMLIGANTD 231
Query: 169 NPKPH---FYLLSEIARECKL------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + E+ + T+LSMGMT D E+AIA G+T VRIG+ +FG RP
Sbjct: 232 DVAAVAASHARVRELRDAVQAAGVASCTELSMGMTGDMEIAIAEGSTEVRIGTAVFGPRP 291
>gi|6723446|emb|CAB66326.1| putative YPT5 protein [Corynebacterium glutamicum]
Length = 221
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K +
Sbjct: 2 QARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALE--- 58
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIKQSRFLPVY 123
D+ IG +QS K + I + +V EK A L + LP +
Sbjct: 59 LPDMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALERGDRTGDELPCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQ++ + + G +Q L EGLMC+PP +P+ F ++
Sbjct: 119 IQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQARDVLSG 178
Query: 184 C--KLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ S GM+ D AI G+T VR+G+ I G RP
Sbjct: 179 LEEHFDRSLEFSAGMSGDLIAAIKHGSTIVRVGTEILGNRP 219
>gi|312220182|emb|CBY00124.1| hypothetical protein [Leptosphaeria maculans]
Length = 770
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 92/247 (37%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L + +I+ + V L+AVSK+ + I Q F EN +Q
Sbjct: 516 LAENIAGISSRIDA----VSKGGKQVRLIAVSKLKPANDILALHQPPNPIQTHFGENYVQ 571
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------- 111
E + +Q IG LQSNK + + VS T +
Sbjct: 572 ELLE--KAKLLPRSIQWHMIGGLQSNKCKALAEQIPNLWCVSSVDTEKKANELEKGRKAL 629
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCI------ 163
+ + L + IQVNT E KSG+ P T L + GLM I
Sbjct: 630 LDHDPSAPKLRIKIQVNTSGEASKSGVEPAHTLALCTHVLEHCPHLQLSGLMTIGAIARS 689
Query: 164 -PPAMGNPKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L E +A +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 690 KATTPETENEDFVALRETRNRVAEALGWEQDRLELSMGMSADFEGAIRHGSDEVRVGSQI 749
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 750 FGERPPK 756
>gi|85077550|ref|XP_956018.1| hypothetical protein NCU03579 [Neurospora crassa OR74A]
gi|28881125|emb|CAD70296.1| conserved hypothetical protein [Neurospora crassa]
gi|28917059|gb|EAA26782.1| hypothetical protein NCU03579 [Neurospora crassa OR74A]
Length = 262
Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats.
Identities = 69/242 (28%), Positives = 97/242 (40%), Gaps = 31/242 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE-NKLQEA 61
L ++LQ + +I A RP V LVAVSK+ + I QV A +
Sbjct: 16 LVSQLQSVQDRILAVAK--GRP---VRLVAVSKLKPANDILALHQAPQVQHAHFGENYAQ 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI--------ETVSREKTASLLSLEM 113
+ + +Q FIG LQ+ + + ++ + +
Sbjct: 71 ELQQKAELLPRSIQWHFIGGLQTTHCKSLARIPNLWAVSSLDTLKKAQTLNRVRGEVISS 130
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCI-------P 164
L V++QVNT E KSG P Q + + LN+ GLM I
Sbjct: 131 DPSIPKLNVHVQVNTSGEESKSGCSPGQETVDLCKAIVTECPHLNLLGLMTIGAIARSKA 190
Query: 165 PAMGNPKPHFYLLSEIA----RECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
N F +L E +E L +LSMGM+ DFE AIA G+ VR+GS IFG
Sbjct: 191 TTPENENEDFVVLREQRDLVEKELGLDKGSLELSMGMSEDFEGAIAMGSGEVRVGSTIFG 250
Query: 217 ER 218
ER
Sbjct: 251 ER 252
>gi|15827439|ref|NP_301702.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221229916|ref|YP_002503332.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|13092989|emb|CAC31300.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933023|emb|CAR71014.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length = 260
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 22/233 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++ ++ A R + L+ +SK + + + G E++ QEA K
Sbjct: 22 LATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKAA 81
Query: 67 PLRKEWD--------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI---- 114
+ + +G +Q NKV + ++ + + L +
Sbjct: 82 EFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALA 141
Query: 115 --KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
++ + L VY+Q++ +I + G+ P + L + GLM IPP N
Sbjct: 142 GGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPPLGWN 201
Query: 170 PKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P F L + LS GM+ DFE+A+ G+T VR+G+ + G
Sbjct: 202 PDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 254
>gi|15214403|sp|Q9CCE2|Y919_MYCLE RecName: Full=UPF0001 protein ML0919
Length = 257
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 22/233 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++ ++ A R + L+ +SK + + + G E++ QEA K
Sbjct: 19 LATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTKAA 78
Query: 67 PLRKEWD--------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI---- 114
+ + +G +Q NKV + ++ + + L +
Sbjct: 79 EFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAALA 138
Query: 115 --KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
++ + L VY+Q++ +I + G+ P + L + GLM IPP N
Sbjct: 139 GGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPPLGWN 198
Query: 170 PKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P F L + LS GM+ DFE+A+ G+T VR+G+ + G
Sbjct: 199 PDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251
>gi|294673995|ref|YP_003574611.1| hypothetical protein PRU_1297 [Prevotella ruminicola 23]
gi|294472457|gb|ADE81846.1| conserved hypothetical protein TIGR00044 [Prevotella ruminicola 23]
Length = 224
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVA+SK ++ I A GQ +F E+ QE ++K D++ FIG LQ+
Sbjct: 17 PQGVRLVAISKYHPNEYIEAAYEEGQRVFGESHEQELRQKHQS--LPQDIEWHFIGHLQT 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +IE V K ++ + K R + V ++++ E K G+ + ++
Sbjct: 75 NKVKYIAPYVTMIEAVDSLKLLREINKQAEKCGRRIKVLLELHIAEEATKYGLTLDACRE 134
Query: 145 --FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK---------LTKLS 190
R+ + + GLM + + + + + E K + S
Sbjct: 135 LLAAGEWREMQHVQICGLMMMASFVNDEAQIRQEMQTARDFFDEVKAQYFADDDAFCERS 194
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
GM+ D+ +A+ +G+T +R+G+ IFG R
Sbjct: 195 WGMSDDYPIALQTGSTMIRVGTKIFGPRVY 224
>gi|302496453|ref|XP_003010228.1| hypothetical protein ARB_03580 [Arthroderma benhamiae CBS 112371]
gi|291173769|gb|EFE29588.1| hypothetical protein ARB_03580 [Arthroderma benhamiae CBS 112371]
Length = 301
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/279 (22%), Positives = 97/279 (34%), Gaps = 60/279 (21%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-------------------------VSLVAVSKMV 37
L L ++I ++ ++ V LVAVSK+
Sbjct: 18 LIANLSSVSKRIAAASNSRNNHNETSPSPSAGPVAVTSTSDSSNNSAAPPVRLVAVSKLK 77
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
+ I S + + +++ FIG LQSNK + +
Sbjct: 78 PASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRWHFIGGLQSNKCVTLAREVRGL 137
Query: 98 -----------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
R + + R L V++QVNT E KSGI P
Sbjct: 138 WAVESVDTEKKASLLDKGWGERAEFKQKENGANEPPDRRLRVFVQVNTSGEENKSGIQPG 197
Query: 141 QT--KDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECKLT 187
+ + + + +L ++GLM I N F L + + L
Sbjct: 198 EPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLSLK 257
Query: 188 -----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 258 GEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 296
>gi|261338600|ref|ZP_05966484.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium gallicum
DSM 20093]
gi|270276641|gb|EFA22495.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium gallicum
DSM 20093]
Length = 269
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 28/244 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
+ + + ++ + A RP+ V L+A +K D ++ A+ G + EN+ QE
Sbjct: 23 ITDNVHRALDQLAQAVADAGRPEGCVQLLAATKTRDVGEVHAAIQAGIRLIGENRPQEIL 82
Query: 62 ---------------KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ DV L IG LQSNK+ +I+ +VIE+V A
Sbjct: 83 AKIDGLRELCAADGLQVGRQDDDAAPDVPLHLIGQLQSNKIGKILPFTNVIESVDSLDLA 142
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
++ + + + V ++VN E KSG P Q +D + + GLM +
Sbjct: 143 QKIARRAVAHTMTVDVLLEVNESGETSKSGCAPEQARDIAGAIGALDGVRLVGLMTVGAH 202
Query: 167 MGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + + F L E+ E + +LSMGM+ D AI G+T VR+G I
Sbjct: 203 VDDEAIVRQGFAHLRELRDELVASGEQGTDECLQLSMGMSGDAAWAIDEGSTQVRLGRAI 262
Query: 215 FGER 218
FGER
Sbjct: 263 FGER 266
>gi|304382896|ref|ZP_07365378.1| YggS family pyridoxal phosphate enzyme [Prevotella marshii DSM
16973]
gi|304335921|gb|EFM02169.1| YggS family pyridoxal phosphate enzyme [Prevotella marshii DSM
16973]
Length = 225
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + V LVA+SK ++ I A GQ IF E+ QE
Sbjct: 5 DIARNLHEVLDTL----------PTGVKLVAISKYHPNEYIETAYREGQRIFGESHEQEL 54
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK D+ FIG LQ+NKV IV +IE V K ++ + K R +
Sbjct: 55 AKKHDA--LPKDIAWHFIGHLQTNKVKYIVPYISMIEAVDSLKLLKEINKQAAKHERVVK 112
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V +++ E K G+ N + R+ + + GLM + + + K
Sbjct: 113 VLLELRVAQEATKYGLSFNDCRALLEAGEWREMKHVKLCGLMTMASHVSDEKQITEEFTR 172
Query: 178 ----------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + S GM++D+ +AI +T VR+G+ IFGER
Sbjct: 173 AADFFDEVKSRYFKEDADFKERSWGMSQDYPIAIKCRSTMVRVGTRIFGERVY 225
>gi|315924167|ref|ZP_07920393.1| cell division protein YlmE [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622569|gb|EFV02524.1| cell division protein YlmE [Pseudoramibacter alactolyticus ATCC
23263]
Length = 232
Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 24/225 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ DSV L+AV+K + + + G + EN +Q+
Sbjct: 16 IARNVAKVQSQL----------PDSVRLIAVTKKHTIAETQAVVDAGVMDLGENHVQDLI 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK + ++ D+ FIG LQ+NKV ++ +I +VS K + E K++ +
Sbjct: 66 KKKLEIKG--DIHWHFIGHLQTNKVKYLIGEVAMIHSVSSLKLLKKIEQESAKKNLVTNI 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLSE 179
+Q N E KSG N+ + +N+ GLMC+ P N L E
Sbjct: 124 LLQFNLAEEATKSGFSANELTKATEEVARLSHINLRGLMCMGPMTENSDEIHKIFGQLKE 183
Query: 180 IARECKLTK---------LSMGMTRDFELAIASGATSVRIGSGIF 215
+ + K+T LSMGMT D+ +AIA GAT VR+G IF
Sbjct: 184 MYDKIKITYQNGENQIDCLSMGMTNDYPIAIAEGATCVRVGRKIF 228
>gi|2308994|dbj|BAA21689.1| hypothetical protein similar to YPI1 or YPT5 [Corynebacterium
glutamicum]
Length = 221
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 15/221 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K +
Sbjct: 2 QARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALE--- 58
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIKQSRFLPVY 123
D+ IG +QS K + I + +V EK A L + S LP +
Sbjct: 59 LPDMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSDELPCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQ++ + + G +Q L EGLMC+PP +P+ F ++
Sbjct: 119 IQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQARDVLSG 178
Query: 184 C--KLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ S GM+ D AI G+T VR+G+ I G RP
Sbjct: 179 LEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 219
>gi|224437555|ref|ZP_03658513.1| hypothetical protein HcinC1_06300 [Helicobacter cinaedi CCUG 18818]
Length = 225
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 12/223 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ ++IE + + +SLVAVSK + IR CGQ F ENK+Q+ +
Sbjct: 2 LALQLERILRRIERARLAYN-AHQIISLVAVSKYQNVDSIRALYECGQRAFGENKVQDLR 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + + ++ FIG LQ NK++ + + A L+ +
Sbjct: 61 LK-AQILDDVPLEWHFIGKLQENKINALLALKPSLIHSVDSLKTAQAIQKRLQTLLGEAK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP---PAMGNPKPHFY 175
+ +Q+N EI KSG+ ++ + + +EG+MCI P + F
Sbjct: 120 VRALLQINAADEISKSGVSVESAREVYDEILKTCPNIIMEGVMCIGANSPNRKEIEQSFQ 179
Query: 176 LLSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
S+I + LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 180 KTSDIFHSLQDKGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 222
>gi|225718710|gb|ACO15201.1| Proline synthetase co-transcribed bacterial homolog protein
[Caligus clemensi]
Length = 248
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 16/236 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAK---RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
S+ + L +KI + R K+ +L+AVSK + I A + GQ F EN +
Sbjct: 12 SVADNLMCVLEKIRVTYEKTSPETRSKNLPNLIAVSKTKPKENIIEAYNAGQRHFGENYV 71
Query: 59 QEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QE +K ++ FIGSLQS VS+++ + ++ + + L+ Q+
Sbjct: 72 QELLEKSTELESTCPEISWHFIGSLQSKNVSKLLKVRNLSVLHTLSSRSLADKLQNATQA 131
Query: 118 RFLP-----VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
R +P V + V+ P + + +L+ GLM I
Sbjct: 132 RDIPSLSVLVQVNVSGEANKGGVAFGPEVSALVSYILSSCPRLHFLGLMAIGAPGEEKAD 191
Query: 171 -KPHFYLLSEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++A+E + + LS+GM+ D E A+ G+T +R+G IFGER +
Sbjct: 192 FSRMRDLRRDVAQEHGINEESLRLSIGMSGDMETAVEYGSTDLRMGRQIFGERTPK 247
>gi|221194697|ref|ZP_03567754.1| pyridoxal phosphate enzyme, YggS family [Atopobium rimae ATCC
49626]
gi|221185601|gb|EEE17991.1| pyridoxal phosphate enzyme, YggS family [Atopobium rimae ATCC
49626]
Length = 241
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + +A + R + L+AVSK V+ + + A G F EN+ QE
Sbjct: 7 LTQRRSEILGLVSEAAKCSGRDASEIELIAVSKTVEPEAVHDAYQAGYRTFGENRPQELG 66
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K DV+ IG+LQ+NK++ ++ +I ++S E A +S+ +
Sbjct: 67 RKIEALKTWPDMADVRFDMIGNLQTNKINHVIGKARLIHSISSEHLARAVSMRAEAKDCI 126
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLL 177
V +++N E KSG P + + +++ GLM + P + F L
Sbjct: 127 CQVLLEINVSGEESKSGFSPQEVQRAADNLMSLSGISICGLMTMAPQGDAYRARKTFAGL 186
Query: 178 SE----IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIF 215
E ++++ L LS GM+ DF LA+ G+T VR+G +F
Sbjct: 187 RELQGTLSKQMGLPLSVLSCGMSDDFPLAVREGSTMVRLGRLVF 230
>gi|284044976|ref|YP_003395316.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
gi|283949197|gb|ADB51941.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
Length = 222
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 10/215 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +Q+I+ +A +A R V L+A K V + + V + G + EN+ Q+ +
Sbjct: 13 VSANVAEARQRIDEAAAIAGRDPGEVELLAAVKYVPLESVGVLAAAGITLVGENRAQDLE 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + FIG LQS KV +I+ +I +V+ + L L V
Sbjct: 73 AKAAAHPGLF--TWDFIGHLQSRKVKQILPWVRLIHSVASDSVLDQLGKHG-AARPDLEV 129
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E KSG+ P FV C + V GLM +PP P + HF L E
Sbjct: 130 LIEVNVAGEASKSGVAPADLAAFVERCP----VTVSGLMTMPPLAAAPEDNRRHFAALRE 185
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+A L +LSMG ++D+E+A+ GAT VR+GS +
Sbjct: 186 LAASHGLRRLSMGTSQDYEVAVEEGATIVRLGSTL 220
>gi|72383565|ref|YP_292920.1| hypothetical protein PMN2A_1729 [Prochlorococcus marinus str.
NATL2A]
gi|72003415|gb|AAZ59217.1| Protein of unknown function UPF0001 [Prochlorococcus marinus str.
NATL2A]
Length = 213
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 13/215 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ K I V+L+AVSK IR GQ+ F E++LQEA K I
Sbjct: 9 FKKIKDSI----------PLGVNLLAVSKGHKHDSIRKLSGYGQLDFGESRLQEAILKKI 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L ++ F+G+LQ NKV ++ FD I +V +S ++ + +++QV
Sbjct: 59 DLSDLTQLRWHFVGTLQKNKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQV 118
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARE 183
+ K G + + +N+ GLM IPP + N L A
Sbjct: 119 KFIEDPNKGGFLKEELLKSWSNIISLKNINLIGLMTIPPIVLNAYQRKDLFCECRNFANH 178
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SMGM+ D++ AI GAT +R+GS +FG+R
Sbjct: 179 LGLKDCSMGMSNDWQEAIQGGATWIRLGSLLFGKR 213
>gi|262341190|ref|YP_003284045.1| alanine racemase domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272527|gb|ACY40435.1| alanine racemase domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 218
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 20/224 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N+ ++ I ++ +VAVSK + I G F EN +QE
Sbjct: 2 IENRFFSIRRLI----------PKNIKIVAVSKNQNVSSIEKLYKLGHKDFGENYVQEMM 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ D++ IG +QSNK+ I+ +I +V + + L++ +K R +
Sbjct: 52 DKYKK--LPKDIRWHMIGRIQSNKLKYIIPFIHLIHSVQKLEQIQLINKIALKYGRRINC 109
Query: 123 YIQVNTGYEIQKSGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--LS 178
+Q+ E KSGI + + + G+M + K H L
Sbjct: 110 LLQIKICNEKSKSGITDQEFYDILENKTYQSMKNVKIVGIMGMASFQELTKIHNEFGYLR 169
Query: 179 EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +C+ LSMGM+RD+ +AI G+T VR+G+ IFG R
Sbjct: 170 KFYDKCQKKYGFYILSMGMSRDYNIAIQYGSTIVRLGTSIFGNR 213
>gi|229071400|ref|ZP_04204622.1| hypothetical protein bcere0025_35720 [Bacillus cereus F65185]
gi|229081153|ref|ZP_04213663.1| hypothetical protein bcere0023_37920 [Bacillus cereus Rock4-2]
gi|228702197|gb|EEL54673.1| hypothetical protein bcere0023_37920 [Bacillus cereus Rock4-2]
gi|228711691|gb|EEL63644.1| hypothetical protein bcere0025_35720 [Bacillus cereus F65185]
Length = 200
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ K+ + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGVIDLGENRNEGFLQKYEHFCKKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+++AI GAT +R+G+ + G+
Sbjct: 177 NDYKIAIEEGATYIRLGTILVGK 199
>gi|320539546|ref|ZP_08039213.1| pyridoxal phosphate enzyme [Serratia symbiotica str. Tucson]
gi|320030399|gb|EFW12411.1| pyridoxal phosphate enzyme [Serratia symbiotica str. Tucson]
Length = 207
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/204 (31%), Positives = 89/204 (43%), Gaps = 11/204 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV---QLRFIGSLQSN 85
+L+AVSK I A++ GQ F EN +QE K + + FIG LQSN
Sbjct: 2 TLLAVSKTKPVAVIAEAIAAGQRTFGENYVQEGVDKIQHFAALPEGTALEWHFIGPLQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F +TV R + A L+ + L V IQ+N E KSGI+ +
Sbjct: 62 KSRLVAEHFAWCQTVDRLRIAERLNNQRPATMAPLNVLIQINISDEQSKSGIVLDALPAL 121
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC--------KLTKLSMGMTRDF 197
L + GLM IP + ++ ++ LSMGMT D
Sbjct: 122 AEAIVALPNLMLRGLMAIPAPEVVYPRQLAVFGQMNDAFLALRQRYPQVDTLSMGMTDDM 181
Query: 198 ELAIASGATSVRIGSGIFGERPCQ 221
AIA+G+T VRIG+ IFG R
Sbjct: 182 AAAIAAGSTMVRIGTAIFGHRDYS 205
>gi|268531132|ref|XP_002630692.1| Hypothetical protein CBG02374 [Caenorhabditis briggsae]
gi|187037468|emb|CAP24134.1| hypothetical protein CBG_02374 [Caenorhabditis briggsae AF16]
Length = 550
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 19/239 (7%)
Query: 1 MSL---GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MSL L + + ++ ++ LVAVSK ++ I S GQ F EN
Sbjct: 1 MSLEIVQRNLLNILEAVADAVTISS-ATKRCRLVAVSKTKSAEMIESCFSQGQRHFGENY 59
Query: 58 LQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---- 112
+QE ++K L + +++ FIG +QSNK+S+I + + + E +
Sbjct: 60 VQELEEKSAALASKCAEIRWHFIGQVQSNKISKICNSSGIWCVETVESEKHARLFDKEWS 119
Query: 113 -MIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
S L V +QVNT E K GI ++ K + ++ L +G M I
Sbjct: 120 KHGASSSPLRVLVQVNTSEEENKGGIKISEAPKLAEFIRKECLNLKFDGFMTIGSHASGV 179
Query: 171 KPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L + + + +LSMGM+ DF AI G+TSVR+GS +FG R +
Sbjct: 180 NPDFEKLYTVRQAWSEITGETPESVELSMGMSDDFLQAIQQGSTSVRVGSKLFGAREKK 238
>gi|156743669|ref|YP_001433798.1| alanine racemase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156234997|gb|ABU59780.1| alanine racemase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 240
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/212 (33%), Positives = 97/212 (45%), Gaps = 21/212 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSNK 86
+ LV V+K + IR AL+ G EN++QEA+ K + L IG LQ+NK
Sbjct: 29 IRLVGVTKAQPVEAIRAALAAGLHEIGENRVQEAEAKMSALAADRRRLTLHLIGHLQTNK 88
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ +LFD++ +V + A +L + + LPV +QVN E+ KSG +
Sbjct: 89 AKKAATLFDMVHSVDSLRLAQILDRHAAETTDRLPVLLQVNVSGEMTKSGFDLCHWETLP 148
Query: 147 ILCRQK----------YQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECKLT------ 187
+ + L V GLM I P +P F + L
Sbjct: 149 DVYDRFCADVEQILALPHLEVRGLMTIAPWGPDPEQARPVFRAARRLRDSLALRFPATAW 208
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT DFE+AI GAT VRIG IFGER
Sbjct: 209 RDLSMGMTDDFEVAIEEGATIVRIGRAIFGER 240
>gi|330918264|ref|XP_003298159.1| hypothetical protein PTT_08769 [Pyrenophora teres f. teres 0-1]
gi|311328814|gb|EFQ93739.1| hypothetical protein PTT_08769 [Pyrenophora teres f. teres 0-1]
Length = 269
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 94/247 (38%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L + +I+ + V L+AVSK+ + I F EN +Q
Sbjct: 15 LAENIATISSRIKA----VSKDGKQVRLIAVSKLKPANDILALHQKPDPIHTHFGENYVQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------- 111
E + ++ IG LQSNK ++ + VS + +
Sbjct: 71 ELIE--KSKLLPRTIRWHMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKAL 128
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI------ 163
E L V +QVNT E +KSG+ P+ + L + GLM I
Sbjct: 129 SEKDNSEEKLRVKVQVNTSGEKEKSGVEPSDAITLCRHIIEKCPHLQLSGLMTIGAIARS 188
Query: 164 -PPAMGNPKPHFYLLSEIA----RECKLTK----LSMGMTRDFELAIASGATSVRIGSGI 214
N F L E +E + LSMGM+ DFE AI G+ VR+GS I
Sbjct: 189 KATTPENENEDFVALRETRDKVTKELGWEEGQLELSMGMSADFEGAIRMGSDEVRVGSEI 248
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 249 FGERPQK 255
>gi|39961008|ref|XP_364647.1| hypothetical protein MGG_09492 [Magnaporthe oryzae 70-15]
gi|145010990|gb|EDJ95646.1| hypothetical protein MGG_09492 [Magnaporthe oryzae 70-15]
Length = 251
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/241 (28%), Positives = 97/241 (40%), Gaps = 29/241 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQE 60
L ++L+ ++++++A RP V LVAVSK+ + I S G F EN QE
Sbjct: 11 LASQLRAVTERLQSAAK--GRP---VRLVAVSKLKPANDILALHSAPVGHTHFGENYAQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL---LSLEMIKQS 117
+Q FIG LQS I + ++ S +
Sbjct: 66 L--SQKAQVLPRSIQWHFIGGLQSTHCKSIAKIPNLWCVSSVDTLKKAQLLDRARGQAGE 123
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTK---DFVILCRQKYQLNVEGLMCI-------PPAM 167
L +++QVNT E KSG P + + + L + GLM I
Sbjct: 124 PPLNIHVQVNTSGEESKSGCAPGEETIALCRAVASDECPNLRLLGLMTIGAIARSRATTP 183
Query: 168 GNPKPHFYLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L E +LSMGM+ DFE AI+ G+ VRIGS IFGERP
Sbjct: 184 ETENEDFVCLREQRDLVAKELALEGELELSMGMSDDFEGAISMGSHEVRIGSTIFGERPA 243
Query: 221 Q 221
+
Sbjct: 244 K 244
>gi|195159394|ref|XP_002020564.1| GL14062 [Drosophila persimilis]
gi|198449718|ref|XP_002136950.1| GA26943 [Drosophila pseudoobscura pseudoobscura]
gi|194117333|gb|EDW39376.1| GL14062 [Drosophila persimilis]
gi|198130728|gb|EDY67508.1| GA26943 [Drosophila pseudoobscura pseudoobscura]
Length = 254
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 108/247 (43%), Gaps = 30/247 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ + + LVAVSK + + A GQ F EN
Sbjct: 10 DIKAGLQQVLKRIDEVLLQ---RPKEIQAAKPLLVAVSKTKPADAVIEAYKTGQRDFGEN 66
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+QE +K + D++ FIG LQ+NK+++I+SL ++ + + L+
Sbjct: 67 YVQELVEKSQHPEILAQCPDIKWHFIGHLQNNKINKILSLPNLHMIQTVDSEKLATKLDA 126
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
L V IQ+NT E KSGI K + + + L + G+M I
Sbjct: 127 AWSKLKPDTEPPLRVLIQINTSGEEAKSGIETKEAPKLYQFISKNLKHLQLVGIMTIGAF 186
Query: 167 ----MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGI 214
P P F L E+ R C+ L SMGM+ D++ AI G+T VR+GS I
Sbjct: 187 GFDYSTGPNPDFVSLMEVHRSICEANSLTPNSVLVSMGMSNDYDRAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQ 221
FG R +
Sbjct: 247 FGHRAVK 253
>gi|228954177|ref|ZP_04116205.1| hypothetical protein bthur0006_35490 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229180176|ref|ZP_04307520.1| hypothetical protein bcere0005_35220 [Bacillus cereus 172560W]
gi|229192070|ref|ZP_04319039.1| hypothetical protein bcere0002_37260 [Bacillus cereus ATCC 10876]
gi|228591396|gb|EEK49246.1| hypothetical protein bcere0002_37260 [Bacillus cereus ATCC 10876]
gi|228603385|gb|EEK60862.1| hypothetical protein bcere0005_35220 [Bacillus cereus 172560W]
gi|228805497|gb|EEM52088.1| hypothetical protein bthur0006_35490 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 200
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGVIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+++AI GAT +R+G+ + G+
Sbjct: 177 NDYKIAIEEGATYIRLGTILVGK 199
>gi|313682054|ref|YP_004059792.1| alanine racemase domain protein [Sulfuricurvum kujiense DSM 16994]
gi|313154914|gb|ADR33592.1| alanine racemase domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 224
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 11/224 (4%)
Query: 1 MSLGNK---LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+L + +K+E + + V +VA SK VD++ I+ GQ F ENK
Sbjct: 1 MTLLEQKRHFDHIIEKVEKARLRVS-DHHIVKIVAASKYVDAEAIKSLYDIGQRAFGENK 59
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQ 116
+Q+ K K+ ++ FIG+LQ NK++ ++S+ + ++ + A L+ + +
Sbjct: 60 VQDLINK-SEQLKDLPIEWHFIGTLQKNKINHLLSVRPHLLHSIDSIELAHALNERLERD 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFY 175
+L +Q+N+ YE KSG P + + Q +L ++G+M I + +P
Sbjct: 119 EMYLRALVQINSAYEESKSGFFPEEINEKYAQIMQECPRLKLQGVMSIGAHVDDPVLIRK 178
Query: 176 LL---SEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + T SMGM+ DFELAI G+T +R+GS +F
Sbjct: 179 SFETTRRIFETLPQATICSMGMSSDFELAIECGSTMIRLGSILF 222
>gi|313144009|ref|ZP_07806202.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129040|gb|EFR46657.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 222
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++IE + + +SLVAVSK + IR CGQ F ENK+Q+ + K
Sbjct: 3 LERILRRIERARLAYN-AHQIISLVAVSKYQNVDSIRALYECGQRAFGENKVQDLRLK-A 60
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ + ++ FIG LQ NK++ + + A L+ + +
Sbjct: 61 QILDDVPLEWHFIGKLQENKINALLALKPSLIHSVDSLKTAQAIQKRLQTLLGEAKVRAL 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+Q+N EI KSG+ ++ + + +EG+MCI P + F S+
Sbjct: 121 LQINAADEISKSGVSVESAREVYDEILKTCPNIIMEGVMCIGANSPNRKEIEQSFQKTSD 180
Query: 180 IARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 181 IFHSLQDKGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 219
>gi|332022075|gb|EGI62400.1| Proline synthetase co-transcribed bacterial-like protein protein
[Acromyrmex echinatior]
Length = 252
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 108/244 (44%), Gaps = 27/244 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L+ KI +A R + LVAVSK+ + I A GQ F EN +
Sbjct: 4 VAANLKSVCDKISYAATK--RTSEYQYYEPRLVAVSKLQSTVSIVSAYEAGQRNFGENYI 61
Query: 59 QEAKKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVI-----ETVSREKTASLLS 110
E +K K +Q FIG LQ NKV++++S+ ++ ++ +
Sbjct: 62 NELVEKAFSPLIREKCKQIQWHFIGHLQRNKVNKVLSIPNLYIIETVDSDRLANALNNSW 121
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPA--- 166
K + L V +QVNT E +K+G Q V + LN GLM I
Sbjct: 122 PRFRKNNDKLNVMVQVNTSQEKEKNGCDIAQLSTLVKHVVENCFNLNFMGLMTIGMYGYD 181
Query: 167 -MGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F L +I E + +LSMGM+ D+E AI G+T+VR+GS IFG
Sbjct: 182 IKDGPNPDFICLIKCREKIHDELGIDIKDIELSMGMSSDYEHAIELGSTNVRVGSVIFGI 241
Query: 218 RPCQ 221
RP +
Sbjct: 242 RPQK 245
>gi|297559878|ref|YP_003678852.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296844326|gb|ADH66346.1| alanine racemase domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 242
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 12/210 (5%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
A R D VSLVAV+K + +R+ S G EN+ QEA K + F+
Sbjct: 29 KAGRSPDEVSLVAVTKTHPASDVRILASLGVTDVGENRDQEAAPKAAETADL-GLTWHFV 87
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ------ 133
G LQ+NK + S DV+ +V R + A L R L +Q+N + +
Sbjct: 88 GQLQTNKARSVASYADVVHSVDRARLARALGERAAAAGRSLTCLVQINLDEDSRAGVIGP 147
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTK 188
+ G+ P + + L + G+M + P G+P F L E+A R + T
Sbjct: 148 RGGVDPGDALELAARIEEHEALVLGGVMAVAPREGDPSAAFARLQEVAARIRDRYPRATV 207
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+S GM+ D E A+ GAT +R+G+ + G R
Sbjct: 208 VSAGMSGDLEAAVERGATHLRLGTALLGNR 237
>gi|46198503|ref|YP_004170.1| hypothetical protein TTC0195 [Thermus thermophilus HB27]
gi|12056565|emb|CAC21426.1| ylmE [Thermus thermophilus]
gi|46196125|gb|AAS80543.1| ylmE [Thermus thermophilus HB27]
Length = 211
Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 8/194 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ V LVAV+K ++IR L+ G E+++QEA KK + +G LQ
Sbjct: 21 PEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMD----LLHAEWHLVGHLQ 76
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK ++ ++ + A L K L V ++VN G E QK G++ +
Sbjct: 77 RNKAKFAPRF-ALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGREPQKHGVLEEELP 135
Query: 144 DFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ + R+ L V GLM +PP +P F LSE+A L + SMGM+ D+E A+
Sbjct: 136 ELLPRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADRYGLPERSMGMSDDYEWAV 195
Query: 202 ASGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 196 EEGATLVRVGRALF 209
>gi|302868921|ref|YP_003837558.1| alanine racemase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302571780|gb|ADL47982.1| alanine racemase domain protein [Micromonospora aurantiaca ATCC
27029]
Length = 248
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-A 61
L L + +I ++ A R +D V+LVAV+K + + G EN+ QE A
Sbjct: 16 LAAGLARVRARIADACAAAGRQRDEVTLVAVTKTYPAADVVALAGLGVSDVGENRDQEAA 75
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFL 120
K + FIG LQ NK +V DV+++V + A+ L + R L
Sbjct: 76 PKAEAVAAAGAAPRWHFIGQLQRNKARSVVRYADVVQSVDSVRLAAALDAAAGAVRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL------NVEGLMCIPPAMGNPKPHF 174
V +QV+ + + G +P L + + GLM + P P F
Sbjct: 136 DVLVQVSIDGDPARGGALPGAADPQRGLDPVAAAVAGADGLRLAGLMAVAPLGWEPDRAF 195
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+A + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 196 ARLAEVAAALRADHPDATVLSAGMSGDLESAIGHGATHVRVGSALLGMRPA 246
>gi|296166015|ref|ZP_06848467.1| alanine racemase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898636|gb|EFG78190.1| alanine racemase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 262
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 23/243 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVGEIELLPITKFFPATDVVTLSRLGCRAVGESRDQEAS 77
Query: 63 KKWIP---------LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS--- 110
K ++ +G +Q NK + +V S L
Sbjct: 78 AKVSEVTKLLAASSRSDGPALRWHMVGHIQRNKARSVARWAHTAHSVDSLHLVSALDKGV 137
Query: 111 ---LEMIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ +++ + VYIQ++ + + G+ P + L + GLM IP
Sbjct: 138 SAAIAEGRRADPMRVYIQISLDGDASRGGVDISAPGAVDQLCAQAEEAKHLELAGLMAIP 197
Query: 165 PAMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L + LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLGSDPDAAFGRLRTEHLRVLQSHPNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGPRP 257
Query: 220 CQT 222
+
Sbjct: 258 LPS 260
>gi|326475792|gb|EGD99801.1| alanine racemase [Trichophyton tonsurans CBS 112818]
Length = 301
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/279 (23%), Positives = 97/279 (34%), Gaps = 60/279 (21%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-------------------------VSLVAVSKMV 37
L L ++I ++ + V LVAVSK+
Sbjct: 18 LIANLSSVSKRIAAASNSRNNHHNETSTSSNPSPAAVTSTSDSNSPAAPPVRLVAVSKLK 77
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
+ I S + + +++ FIG LQSNK + +
Sbjct: 78 PASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRWHFIGGLQSNKCVTLAREVRGL 137
Query: 98 -----------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
R + S R L V++QVNT E KSGI P
Sbjct: 138 WAVESVDTEKKASLLDKGWGERAEFKQKESEAGEPLDRRLRVFVQVNTSGEENKSGIQPG 197
Query: 141 QT--KDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECKLT 187
+ + + + +L ++GLM I N F L + + L
Sbjct: 198 EPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLSLK 257
Query: 188 -----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G++ VR+GS IFG RP +
Sbjct: 258 GEDTLELSMGMSNDFEGAIAMGSSQVRVGSTIFGARPPK 296
>gi|21903490|sp|O24748|Y2153_CORGL RecName: Full=UPF0001 protein Cgl2153/cg2364
gi|21324923|dbj|BAB99546.1| Predicted enzyme with a TIM-barrel fold [Corynebacterium glutamicum
ATCC 13032]
Length = 221
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K +
Sbjct: 2 QARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALE--- 58
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIKQSRFLPVY 123
D+ IG +QS K + I + +V EK A L + S LP +
Sbjct: 59 LPDMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQ++ + + G +Q L EGLMC+PP P+ F ++
Sbjct: 119 IQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEKAFSQARDVLSG 178
Query: 184 C--KLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ S GM+ D AI G+T VR+G+ I G RP
Sbjct: 179 LEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 219
>gi|258654347|ref|YP_003203503.1| alanine racemase domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258557572|gb|ACV80514.1| alanine racemase domain protein [Nakamurella multipartita DSM
44233]
Length = 249
Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 13/210 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
V ++ +K + + I AL+ G + EN++QE K + + FIG LQ
Sbjct: 41 DPAEVRILLATKTMPPEVIAQALAAGATLIGENRVQEVLAKADA-LAGFPHTMHFIGHLQ 99
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNKV++++ ++T+ L + +R L V+IQVN E KSGI P +
Sbjct: 100 SNKVNQLLPHIQCLQTLDSVDLIGRLQSRLESAARNLDVFIQVNVSGEQTKSGIAPADAR 159
Query: 144 DFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC---------KLTKLSM 191
+ V +L + G M I P + + L+ I +LSM
Sbjct: 160 EMVEAVAAAPRLRLRGFMTIGLNSPDRDAIRRGYRALATIRDRAADEQWPGAQDAVELSM 219
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ DF AIA GAT VR+GS +FG RP +
Sbjct: 220 GMSGDFADAIAEGATIVRLGSAVFGPRPAR 249
>gi|224476290|ref|YP_002633896.1| hypothetical protein Sca_0801 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420897|emb|CAL27711.1| Predicted enzyme with a TIM-barrel fold [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 224
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
+++AV+K V ++ + A G F EN+L+ K K D + FIG+LQS KV
Sbjct: 27 PNVIAVTKYVTIERAKEAYDAGIRNFGENRLEGFKAKKEA--LPDDAIMHFIGTLQSRKV 84
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
E+V D + + R+ A ++ + +R + ++Q+N E K GI N DF+
Sbjct: 85 KEVVDDIDYLHALDRKSLAKEINK---RATRPVNCFVQINVSGEESKHGIALNDVNDFIE 141
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE------CKL-----TKLSMGMTRD 196
+ Q + V GLM + P + + ++ + L T+LSMGM+ D
Sbjct: 142 MLSQYENIRVVGLMTMAPFTEDEAQIRQVFKQLREKRDEINKLNLEYAPCTELSMGMSND 201
Query: 197 FELAIASGATSVRIGSGIFGE 217
+E+A GAT VRIG+ + G+
Sbjct: 202 YEIATEEGATYVRIGTKLVGK 222
>gi|319957195|ref|YP_004168458.1| alanine racemase domain protein [Nitratifractor salsuginis DSM
16511]
gi|319419599|gb|ADV46709.1| alanine racemase domain protein [Nitratifractor salsuginis DSM
16511]
Length = 232
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 10/222 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L+ Q+IE + I V +V VSK + I GQ F EN++Q+
Sbjct: 11 TLARNLEAVIQRIEAARIKVD-EHHIVKMVVVSKYTAIENIATLYDLGQRAFGENQVQQL 69
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKV-SEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+++ L ++ IG LQ NK+ I +++++ A L + + + +
Sbjct: 70 EERVHALEDL-PLEWHMIGRLQKNKINKLIDLDPFLLQSLDSLDLAEALDKRLEAKEKRM 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
+Q+N+ E K+G+ P D + + ++++ G+M I +
Sbjct: 129 ECLLQINSAREESKAGVAPEAAVDVYREIKERFSRIDLRGVMTIGAHTDDKATVRKSFET 188
Query: 178 -SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I E + SMGM+ DFELAI G+ VRIGS +F
Sbjct: 189 TRRIFDELQSEGAEICSMGMSGDFELAIECGSNMVRIGSALF 230
>gi|262197095|ref|YP_003268304.1| alanine racemase domain protein [Haliangium ochraceum DSM 14365]
gi|262080442|gb|ACY16411.1| alanine racemase domain protein [Haliangium ochraceum DSM 14365]
Length = 243
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + ++E + A RP+D+ +VAVSK + + +A G V EN +QE
Sbjct: 14 LRERLAAVRARVEAALERAGRPRDAADIVAVSKKHPAATLALAHRAGVVDVGENYVQEML 73
Query: 63 KKWIPLRKEWDV--QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L E + FIG LQ NKV ++V +I V E A + +Q
Sbjct: 74 GKQDELPAEVAGALRWHFIGHLQRNKVKQVVGRAALIHAVDSEALAREIERRAGQQDVVQ 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PV + VN G E QKSGI + + L + L +GLM +PP + + +
Sbjct: 134 PVLVAVNLGEEAQKSGIARDALPALLALMDELPHLRCDGLMTMPPLAHSSEDSRPYFRAL 193
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
A + L +LSMG T DFE+A+ GAT VR+G+ +FG RP +
Sbjct: 194 AALARELATEARPLARLSMGTTGDFEVALEEGATLVRVGTAVFGPRPPAS 243
>gi|308233437|ref|ZP_07664174.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
gi|328943779|ref|ZP_08241244.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
gi|327491748|gb|EGF23522.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
Length = 259
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++I N+ + R D + L AVSK VD +I A G +F EN+ Q +
Sbjct: 28 LRERKAYLSERITNAVQKSGRSLDDIQLCAVSKTVDVPEILAASRAGYTLFGENRPQALR 87
Query: 63 KKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L+ + IG+LQ NK++ ++ I++VS + A L+ +
Sbjct: 88 DKALSLKSAIQQGSLRFDMIGNLQLNKINMVLDNCCRIQSVSSLELARALNKHAGAKGLR 147
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--L 177
+ +++N E+ KSG + + +++EGLM + P L
Sbjct: 148 VSCLLEINVVGELSKSGFSSKALYECLDELMSMEHIHIEGLMNMAPRNDPDTARRSFVGL 207
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + L+ LS GM+ DFE+A+ G+T +R+G +F
Sbjct: 208 YELHEALRAQTGLELSTLSCGMSDDFEIALEEGSTLIRLGRIVF 251
>gi|78184224|ref|YP_376659.1| hypothetical protein Syncc9902_0647 [Synechococcus sp. CC9902]
gi|78168518|gb|ABB25615.1| Protein of unknown function UPF0001 [Synechococcus sp. CC9902]
Length = 199
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK + IR S GQ F E++LQEA +K L + +Q FIG LQ NKV +
Sbjct: 2 LAVSKGHPAASIRAVASLGQQAFGESRLQEAVEK-QALLSDLTLQWHFIGRLQRNKVRGV 60
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
V F VI +V A +S +++ V +QV + K G+ P++ R
Sbjct: 61 VKAFSVIHSVDSFALAERVSRIAVEEGCCPDVLLQVRFREDPTKGGMEPSELLSAWPQLR 120
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECKLTKLSMGMTRDFELAIASGATS 207
L + GLM + P + L +A + L SMGM+ D+ A+A+G+T
Sbjct: 121 ALPSLRLMGLMTMAPLGLEGEERQTLFLECRSLADQLGLPDCSMGMSGDWTEAVAAGSTW 180
Query: 208 VRIGSGIFGERPCQ 221
+R+GS +FG+R
Sbjct: 181 LRLGSAVFGQRDVP 194
>gi|41407990|ref|NP_960826.1| hypothetical protein MAP1892c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41396344|gb|AAS04209.1| hypothetical protein MAP_1892c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 264
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 23/243 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ V+K + + G E++ QEA
Sbjct: 21 LTHALAAVRSRLAAAAEAAGRNVAEIEVLPVTKFFPATDVVTLSRLGCRAVGESRDQEAT 80
Query: 63 KKWIP---------LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K + +G +Q NK + +V S L
Sbjct: 81 AKVAEVTRLLATSARTNVAIPRWHMVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGV 140
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ + VY+QV+ + + G+ P + L++ GLM IP
Sbjct: 141 AAALADGGRTDPMRVYVQVSLDGDESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIP 200
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 201 PLNSDPDEAFDRLQSEHRRVLETHRNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 260
Query: 220 CQT 222
+
Sbjct: 261 LPS 263
>gi|29832668|ref|NP_827302.1| hypothetical protein SAV_6126 [Streptomyces avermitilis MA-4680]
gi|29609788|dbj|BAC73837.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 239
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R ++ V+L+ V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVEDRIAAACAAAGRGREEVTLIVVTKTYPAIDVRILSELGVRDVAENKDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ F+G LQ+NKV +V DV+++V R K + LS E ++ R +
Sbjct: 68 PKAAECSDL-PLKWHFVGQLQTNKVRSVVGYADVVQSVDRPKLVTALSKEAVRAGREVGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV ++ G+ P ++ L + L ++GLM + P G + F
Sbjct: 127 LIQVALDAQEYGRGERGGVGPGGLEELGDLVAEAPGLRLDGLMTVAPLTGEYAGRQRAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMDLSTDLRRAHPAANMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|254775015|ref|ZP_05216531.1| hypothetical protein MaviaA2_10124 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 261
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 23/243 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ V+K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVAEIEVLPVTKFFPATDVVTLSRLGCRAVGESRDQEAT 77
Query: 63 KKWIP---------LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K + +G +Q NK + +V S L
Sbjct: 78 AKVAEVTRLLATSARTNVAIPRWHMVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGV 137
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ + VY+QV+ + + G+ P + L++ GLM IP
Sbjct: 138 AAALADGGRTDPMRVYVQVSLDGDESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIP 197
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLNSDPDEAFDRLQSEHRRVLETHRNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 257
Query: 220 CQT 222
+
Sbjct: 258 LPS 260
>gi|229152098|ref|ZP_04280293.1| hypothetical protein bcere0011_36380 [Bacillus cereus m1550]
gi|228631447|gb|EEK88081.1| hypothetical protein bcere0011_36380 [Bacillus cereus m1550]
Length = 200
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTKEVIEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|152967138|ref|YP_001362922.1| alanine racemase domain protein [Kineococcus radiotolerans
SRS30216]
gi|151361655|gb|ABS04658.1| alanine racemase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 238
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 11/208 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+++LVAV+K + +R+ G EN+ QEA K L D+ FIG +Q
Sbjct: 29 DPGTLTLVAVTKFFPASDVRLLAGLGVRDAGENRDQEASAKAAELADLPDLHWHFIGQVQ 88
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEIQKSGI 137
+NKV +V + +V R + A L R L ++QV+ + + G
Sbjct: 89 TNKVRSVVRYAGSVHSVDRVRLADALGRAAAGAGRELGCFVQVDLAEALGLPADSGRGGA 148
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSMG 192
+ L + GLM + P P F L+ A+ +LS G
Sbjct: 149 AGEEVLRVADAVAGADALRLRGLMAVAPLGVEPAAAFDALARTAQRVREHHPGALELSAG 208
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPC 220
M+ D E A+A+GAT +R+GS I G RP
Sbjct: 209 MSGDLEQAVAAGATHLRVGSAILGSRPP 236
>gi|118466416|ref|YP_881546.1| hypothetical protein MAV_2342 [Mycobacterium avium 104]
gi|118167703|gb|ABK68600.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 261
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 90/243 (37%), Gaps = 23/243 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ V+K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVAEIEVLPVTKFFPATDVVTLSRLGCRAVGESRDQEAT 77
Query: 63 KKWIP---------LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K + +G +Q NK + +V S L
Sbjct: 78 AKVAEVTRLLATSARTNVAIPRWHMVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGV 137
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ + VY+QV+ + + G+ P + L++ GLM IP
Sbjct: 138 AAALADGGRIDPMRVYVQVSLDGDESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIP 197
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLNSDPDEAFDRLQSEHRRVLETHRNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 257
Query: 220 CQT 222
+
Sbjct: 258 LPS 260
>gi|296818063|ref|XP_002849368.1| alanine racemase family protein [Arthroderma otae CBS 113480]
gi|238839821|gb|EEQ29483.1| alanine racemase family protein [Arthroderma otae CBS 113480]
Length = 280
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/267 (20%), Positives = 88/267 (32%), Gaps = 48/267 (17%)
Query: 3 LGNKLQVFKQKIENSAILAKRP----------------KDSVSLVAVSKMVDSKKIRVAL 46
L L ++I ++ V LVAVSK+ + I
Sbjct: 10 LIANLSSVSKRIAAASSRRNHDETSPSSNNNNTNSDSPAAPVRLVAVSKLKPASDILALH 69
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV----SEIVSLFDVIETVSR 102
S + + +++ FIG LQSNK E+ L+ V +
Sbjct: 70 SPPTSHLHFGENYVQELLEKSKVLPPEIRWHFIGGLQSNKCVMLAREVRGLWAVESVDTE 129
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVILCR 150
+K + L + + + + +
Sbjct: 130 KKASLLDKGWGERPEFKDKGTVDTDGTSEQEDRRLRVFVQVNTSGEESEPSVELCRFIRE 189
Query: 151 QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR----ECKLT-----KLSMGMT 194
Q +L ++GLM I N F L + + L +LSMGM+
Sbjct: 190 QCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTKDMVEEKLSLEGKDRLELSMGMS 249
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQ 221
DFE AIA G++ VR+GS IFG RP +
Sbjct: 250 NDFEGAIAMGSSQVRVGSTIFGARPPK 276
>gi|156064729|ref|XP_001598286.1| hypothetical protein SS1G_00372 [Sclerotinia sclerotiorum 1980]
gi|154691234|gb|EDN90972.1| hypothetical protein SS1G_00372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 265
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 73/247 (29%), Positives = 106/247 (42%), Gaps = 34/247 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+L + Q +++ N+A +V LVAVSK+ + I F EN QE
Sbjct: 12 TLISAFQSVSERVSNAA-----GTRNVRLVAVSKLKPATDILALHEQANVEHFGENYAQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL--------- 111
+K +++ FIG LQSNK + S + VS + S
Sbjct: 67 LMEKAE--ILPRNIKWHFIGGLQSNKCKPLASTISNLYLVSSVDSQKKASQLSIGRSLLP 124
Query: 112 ---EMIKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPA 166
+ L ++IQVNT E KSG+ P T+ + + L + GLM I
Sbjct: 125 VPADSSSHPSPLNIHIQVNTSGESSKSGVTPGKETTELCKYVIEECPFLKLVGLMTIGAI 184
Query: 167 ------MGNPKPHFYLLSE----IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGI 214
G F +L E + +E L +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 185 ARSQMKEGEENEDFIVLREERDRVEKELGLEGLELSMGMSEDFEEAIRQGSGEVRVGSTI 244
Query: 215 FGERPCQ 221
FG+RP +
Sbjct: 245 FGQRPAK 251
>gi|146087566|ref|XP_001465860.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134069960|emb|CAM68291.1| putative alanine racemase [Leishmania infantum JPCM5]
gi|322499304|emb|CBZ34378.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 245
Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + + R V+L+AVSK + + GQ +F EN +QE
Sbjct: 14 TLALNYKAVRDTVAQ--ESGNRR---VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQ 116
+ D FIG LQSNKV E++ + + + + +
Sbjct: 69 GE--KAKVLPEDTVWHFIGHLQSNKVKELLEGVPNLRVIQTIDSENLASKVNEGCRKYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
R L VYIQVNT E KSG P + + + L ++GLM I +P
Sbjct: 127 GRPLEVYIQVNTSGEETKSGTEPGEATVALAKYIVDECPLLRLKGLMTIGMPDYTSRPEN 186
Query: 175 YLL-----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++A+ ++ +LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 187 FECLTKCREDVAQAVQMAPEDLELSMGMSGDYVNAIRMGSTTVRVGTSIFGQRYYP 242
>gi|313617990|gb|EFR90145.1| pyridoxal phosphate enzyme, YggS family [Listeria innocua FSL
S4-378]
Length = 208
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 15/204 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R + V+LVAV+K +D I G F EN+ K L + D+ +IGS
Sbjct: 1 NRQQADVTLVAVTKTIDVAGITELYDLGIRHFGENRADVFLDKTRELADKDDICWHYIGS 60
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+ KV +++ D + ++ R A + + ++ + ++QVN E K G +
Sbjct: 61 LQTRKVKDVLPEIDYLHSLDRSSLAKEIE---KRATKPIKCFLQVNISGEESKHGFSKEE 117
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----------RECKLTKLS 190
F+ + + GLM + P + K ++ E+ + T+LS
Sbjct: 118 ALSFLQEADFN-FIEIIGLMTMAPITNSDKELHHVFHELKQLQQEIHALQLKNVPCTELS 176
Query: 191 MGMTRDFELAIASGATSVRIGSGI 214
MGMT D+ +AI GAT +R+G +
Sbjct: 177 MGMTNDYGIAITEGATFIRVGRAL 200
>gi|222619875|gb|EEE56007.1| hypothetical protein OsJ_04770 [Oryza sativa Japonica Group]
Length = 244
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +A + R ++V +VAV K +R G F EN +QE
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVT--K 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
+ D++ FIG LQSNKV +++ + V + + L V
Sbjct: 72 APQLPEDIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGRDPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QVNT E KSGI P++ + + L GLM I + P +
Sbjct: 132 LVQVNTSGEESKSGIDPSRCVELAKHVKLACPHLIFSGLMTIGMKDYSSTPENFKALVNC 191
Query: 179 --EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + + +LSMGM+ DFE AI G+TSVRIGS IFG R
Sbjct: 192 KLEVCKAIDMPAEQFELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYP 240
>gi|218189740|gb|EEC72167.1| hypothetical protein OsI_05211 [Oryza sativa Indica Group]
Length = 244
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 98/229 (42%), Gaps = 16/229 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +A + R ++V +VAV K +R G F EN +QE
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVT--K 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
+ D++ FIG LQSNKV +++ + V + + L V
Sbjct: 72 APQLPEDIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGRDPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QVNT E KSGI P++ + + L GLM I + P +
Sbjct: 132 LVQVNTSGEESKSGIDPSRCVELAKHVKLACPHLIFSGLMTIGMKDYSSTPENFKALVNC 191
Query: 179 --EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + + +LSMGM+ DFE AI G+TSVRIGS IFG R
Sbjct: 192 KLEVCKAIDMPAEQFELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYP 240
>gi|284991679|ref|YP_003410233.1| alanine racemase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064924|gb|ADB75862.1| alanine racemase domain protein [Geodermatophilus obscurus DSM
43160]
Length = 246
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 10/202 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + +R + GQ F EN+ QE K + ++ FIG LQ NK
Sbjct: 28 EVRLLAVSKTWPADAVRELAALGQADFGENRAQELTGKAAE-LADLPLRWHFIGQLQRNK 86
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI----QKSGIMPNQT 142
+ + L V+ +V R A L+ ++ R + V++QV+ G + G P +
Sbjct: 87 AAAVARLGAVVHSVDRLSLARALARVGVETGRPVEVFLQVDLGGPEGELAARGGADPAEV 146
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMGMTRDF 197
+ L + GLM + P P P F L+ +A+ + LS GM+ D
Sbjct: 147 PALADAVAAEEGLALRGLMAVAPRGAAPGPAFGRLAALAQRVRADHPEALDLSAGMSADL 206
Query: 198 ELAIASGATSVRIGSGIFGERP 219
E A+A+G+T +R+G+ +FG RP
Sbjct: 207 EEAVAAGSTLLRVGTALFGTRP 228
>gi|315504609|ref|YP_004083496.1| alanine racemase domain protein [Micromonospora sp. L5]
gi|315411228|gb|ADU09345.1| alanine racemase domain protein [Micromonospora sp. L5]
Length = 248
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 13/227 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKW 65
L + +I ++ A R +D V+LVAV+K + + G EN+ QE A K
Sbjct: 20 LARVRARIADACAAAGRQRDEVTLVAVTKTYPAADVVALAGLGVSDVGENRDQEAAPKAE 79
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYI 124
+ FIG LQ NK +V DV+++V + A+ L + R L V +
Sbjct: 80 AVAAAGAAPRWHFIGQLQRNKARSVVRYADVVQSVDSVRLAAALDAAAGAVRDRPLDVLV 139
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQL------NVEGLMCIPPAMGNPKPHFYLLS 178
QV+ + + G +P L + + GLM + P P F L+
Sbjct: 140 QVSIDGDPARGGALPGAADPQRGLDPVAAAVAGADGLRLAGLMAVAPLGWEPDRAFARLA 199
Query: 179 EIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+A + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 200 EVAAALRADHPDATVLSAGMSGDLESAIGHGATHVRVGSALLGMRPA 246
>gi|284030824|ref|YP_003380755.1| alanine racemase domain-containing protein [Kribbella flavida DSM
17836]
gi|283810117|gb|ADB31956.1| alanine racemase domain protein [Kribbella flavida DSM 17836]
Length = 241
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ + +I + A R +DSV+LVA++K + +R + G EN+ QE K
Sbjct: 12 LRENLQKARDRIGAACRAAGRAEDSVTLVAITKTFPIEDVRTLAALGVTDVGENREQELK 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ F+G LQSNK +V L V+ +V R+ S LS + + + +
Sbjct: 72 AKAPDTS---DLTWHFVGQLQSNKARSVVRLAQVVHSVDRKSLVSALSKAAVAEQKTMRC 128
Query: 123 YIQV--------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+QV + G+ P + + L + G+M + P +P F
Sbjct: 129 LLQVSLAEYGSAEAATGTSRGGVTPADVPELAAAVAEADGLELGGVMAVAPLGADPDEAF 188
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L ++ + +S GMT D + AI GAT VR+G + G RP
Sbjct: 189 AALRAVSSRLRSEHAGAGWISAGMTGDLDAAIRQGATHVRLGRALLGTRPP 239
>gi|308183162|ref|YP_003927289.1| hypothetical protein HPPC_05130 [Helicobacter pylori PeCan4]
gi|308065347|gb|ADO07239.1| hypothetical protein HPPC_05130 [Helicobacter pylori PeCan4]
Length = 222
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKM 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 K-AQSLDHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L ++GLMCI + + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEVYSQISETCKYLKLKGLMCIGAHVDDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|194476540|ref|YP_002048719.1| hypothetical protein PCC_0050 [Paulinella chromatophora]
gi|171191547|gb|ACB42509.1| hypothetical protein PCC_0050 [Paulinella chromatophora]
Length = 225
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 9/208 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+I+++ S L+AVSK K+ GQ+ F E+KLQE K L
Sbjct: 18 LNRIKSAL------PYSSHLLAVSKNYSVDKVHYMAMLGQISFGESKLQEGLLKQKQLLD 71
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ FIG LQSNK+ ++++ F I +VS A L I++ + +Q+
Sbjct: 72 FPNLDWHFIGRLQSNKIRKVINNFHTIHSVSSLALAQKLQQSAIEEEYQPQILLQIKLIS 131
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECKLT 187
++ K G + + + LN+ GLMCI P PK L E+ + L
Sbjct: 132 DVNKVGFSYTELIESWHILTLLKPLNLIGLMCIAPLDLQPKYRRKLFAKCRELVKILGLK 191
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ D+ A+ G+ VRIGS +F
Sbjct: 192 ECSMGMSNDWREAVIEGSHYVRIGSALF 219
>gi|323464725|gb|ADX76878.1| conserved hypothetical protein [Staphylococcus pseudintermedius
ED99]
Length = 224
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + I + + + ++AV+K V + + A G F EN+++
Sbjct: 1 MSVKTNLAEIEHTITEN-VTFREDPTRPHVIAVTKYVTINRAKEAYEAGIRHFGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV + FIGSLQS KV E+++ D + + R+ A +S + +
Sbjct: 60 FLEKKAA--LPDDVHMHFIGSLQSRKVKEVINDIDYLHALDRQSLAKEISK---RAEHEI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI + F+ + V GLM + P N + ++
Sbjct: 115 KCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPYTDNEAELEDIFEKL 174
Query: 181 ARE------CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ LT +LSMGM+ D+ +A GAT VRIG+ + G+
Sbjct: 175 KNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTRLVGK 222
>gi|289676356|ref|ZP_06497246.1| hypothetical protein PsyrpsF_23972 [Pseudomonas syringae pv.
syringae FF5]
Length = 186
Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/184 (35%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
+R A + G F EN LQEA K + L + FIG +QSNK I FD + +V
Sbjct: 1 MREAYTAGLRDFGENYLQEALGKQLELSDL-PLCWHFIGPIQSNKTRAIAENFDWVHSVD 59
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
R K A LS + + L + IQVN E KSG P +L + GLM
Sbjct: 60 RLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLM 119
Query: 162 CIPPAMGNPKPHFYLL---SEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
IP +P + + L LSMGM+ D E AIA GAT VRIG+ +FG
Sbjct: 120 AIPEPTDDPAAQDASFAAVRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFG 179
Query: 217 ERPC 220
R
Sbjct: 180 ARDY 183
>gi|195452638|ref|XP_002073440.1| GK13144 [Drosophila willistoni]
gi|194169525|gb|EDW84426.1| GK13144 [Drosophila willistoni]
Length = 249
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 28/246 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ+ ++I+ +LA RPK+ LVAVSK + I A GQ F EN
Sbjct: 5 DVKAGLQLALKRIDE--VLANRPKEIQTPKPILVAVSKTKPPEAIIEAYEAGQRDFGENY 62
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-- 112
+QE +K K +++ FIG LQ+NK+++++SL ++ + + L+
Sbjct: 63 VQELVEKSQHPDIRSKCPEIRWHFIGHLQNNKINKVLSLPNLHMIQTVDSEKLATRLDAA 122
Query: 113 ----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA- 166
K + L V IQ+NT E KSGI ++ + L + G+M I
Sbjct: 123 WAKLEPKPEQPLRVLIQINTSQEDVKSGIEISKAPSLYQYIKSNLKNLQLMGIMTIGAYG 182
Query: 167 ---MGNPKPHFYLL----SEIARECKLT---KL-SMGMTRDFELAIASGATSVRIGSGIF 215
P P F L I L L SMGM+ D++ AI G+T VRIG+ IF
Sbjct: 183 FDYSNGPNPDFVSLINVQRSICEANNLNPESVLVSMGMSNDYDKAIEMGSTIVRIGTSIF 242
Query: 216 GERPCQ 221
G R +
Sbjct: 243 GHRAAK 248
>gi|229047585|ref|ZP_04193175.1| hypothetical protein bcere0027_35680 [Bacillus cereus AH676]
gi|228723832|gb|EEL75187.1| hypothetical protein bcere0027_35680 [Bacillus cereus AH676]
Length = 200
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVPF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|195395082|ref|XP_002056165.1| GJ10370 [Drosophila virilis]
gi|194142874|gb|EDW59277.1| GJ10370 [Drosophila virilis]
Length = 254
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 30/247 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++IE + ++ LVAVSK + + A GQ F EN
Sbjct: 10 DINAGLQHVLKRIELALQS---RPKEINAPKPLLVAVSKTKPVECVIAAYKAGQRHFGEN 66
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
+QE +K + D++ IG LQSNK++ ++ L ++ + + ++
Sbjct: 67 YVQELVEKSQHPDILAQCPDIKWHLIGHLQSNKINHVLKLPNLHMVQTVDSEKLANKIDA 126
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA 166
S L V +Q+NT E KSGI + L G+M I
Sbjct: 127 AWAKLQPTPSEPLRVLVQINTSGEDVKSGIDASAAPSLFKYISANLKHLQPVGIMTIGAY 186
Query: 167 ----MGNPKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L + R ++SMGM+ D++ AI G+T VR+G+ I
Sbjct: 187 GFDYSNGPNPDFVALMQAHRAICEANDMPPDALQVSMGMSNDYDKAIEMGSTIVRVGTAI 246
Query: 215 FGERPCQ 221
FG R +
Sbjct: 247 FGHRAAK 253
>gi|152990444|ref|YP_001356166.1| hypothetical protein NIS_0695 [Nitratiruptor sp. SB155-2]
gi|151422305|dbj|BAF69809.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 225
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q++E + + V +VAV+K V +++I GQ F E+++Q+ K
Sbjct: 6 LRDNFDEIVQRVEKARMERS-EHHIVQIVAVTKYVGAEEIEALYELGQRAFGESRVQDLK 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQ NK++ ++ +++++ + A + + ++ + +
Sbjct: 65 TKSEALGDL-PIEWHFIGRLQKNKINHLIDLDPWLMQSLDSLELAIEIDKRLERKGKKMD 123
Query: 122 VYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
+Q+N+ E K+G++P +++ + + +N+ G+M I +
Sbjct: 124 CLLQINSAKEESKAGVLPEVAYDEYLKIIEETKHINLCGVMTIGAHTDDTTLIQKSFETT 183
Query: 178 SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+I + SMGM+ DFELAI G+ VRIGS F
Sbjct: 184 YKIFESLQPHGAKICSMGMSNDFELAIRCGSNMVRIGSLFF 224
>gi|229815118|ref|ZP_04445455.1| hypothetical protein COLINT_02160 [Collinsella intestinalis DSM
13280]
gi|229809348|gb|EEP45113.1| hypothetical protein COLINT_02160 [Collinsella intestinalis DSM
13280]
Length = 245
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ Q+++ S + R +D LVAVSK V ++ A+ G +F EN+ QE
Sbjct: 9 IEDRRAEILQRVDASLAVGGRTRDEAELVAVSKTVGLMQVLAAIDAGYRVFGENRPQELH 68
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR- 118
+K +++ V+ IG+LQ+NK++ ++ ++I ++ A +S +++
Sbjct: 69 RKLEGLELVQETRPVRFDMIGNLQTNKINAVLGRVELIHSIGTMHLAEAVSNRALRRLDA 128
Query: 119 -----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPK 171
V I+VN E K G P++ + + + + +EGLM + P +
Sbjct: 129 GELAAPQRVLIEVNVSGEETKGGFSPDELRRSMDGLQNLCGIRIEGLMTMAPRGDKSRAR 188
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E+ E + L +LS GM+ D+E+A+ G+T VR+G +F
Sbjct: 189 ECFAGLRELRDELRVSSGLELRELSCGMSEDYEIALEEGSTIVRLGRVVF 238
>gi|237752208|ref|ZP_04582688.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376450|gb|EEO26541.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 222
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 8/219 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++IE + I R + V LVAVSK ++I +CGQ F ENK+Q+ +
Sbjct: 5 LNQNLLEAIERIEKARIAVDRRR-IVQLVAVSKYSTQEEIATLYACGQRAFGENKVQDLQ 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + ++ FIGSLQSNK++ ++ +++++ + A L + ++++ L
Sbjct: 64 QK-ASTLEALPLEWHFIGSLQSNKINALLQLKPYLLQSLHSLELAQALQSRLERENQQLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+QVN+ E+ KSG MP + + + + + + GLM I + + F L
Sbjct: 123 ALLQVNSAKEVSKSGFMPEVALEAYARIKGECKNIKLCGLMSIGAHTEDKALVQKSFELT 182
Query: 178 SEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + K LSMGM+ DFELAIA G+ VR+GS +F
Sbjct: 183 QNLFSQIKGAEVLSMGMSGDFELAIACGSNCVRLGSTLF 221
>gi|86740126|ref|YP_480526.1| hypothetical protein Francci3_1420 [Frankia sp. CcI3]
gi|86566988|gb|ABD10797.1| Protein of unknown function UPF0001 [Frankia sp. CcI3]
Length = 346
Score = 124 bits (312), Expect = 7e-27, Method: Composition-based stats.
Identities = 72/258 (27%), Positives = 113/258 (43%), Gaps = 41/258 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +I +A A R D ++L+AVSK + + + + G FAEN+ QEA
Sbjct: 86 LTQRLAEVRARIAGAARAAGRDPDHLTLIAVSKTYPPQDVVMMHTLGVRHFAENREQEAG 145
Query: 63 KKWIPLRK-----------------------EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
K + + D F+G LQ NK ++ D +++
Sbjct: 146 PKVSLVTRLIGGERSVPAKGTGDGLSSGATGSDDPIWHFVGQLQRNKARSVLRWADWVQS 205
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-------------IQKSGIMPNQTKDFV 146
V R +LS +++ R L + +QV+ ++ GI P
Sbjct: 206 VDRVSLVPVLSRLAMERGRPLSICLQVSLDLPGASDGKIGASIAGSRRGGIDPAGLSALA 265
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAI 201
L + L + G+M + P G P+P F L E+A K T +S GM+ D E A+
Sbjct: 266 DLVEEAPGLALRGVMAVAPRRGQPRPAFARLREVAERLKVGHPQATVISAGMSGDLEDAV 325
Query: 202 ASGATSVRIGSGIFGERP 219
A GAT +RIG+ +FGERP
Sbjct: 326 AEGATHLRIGTALFGERP 343
>gi|194746150|ref|XP_001955547.1| GF16195 [Drosophila ananassae]
gi|190628584|gb|EDV44108.1| GF16195 [Drosophila ananassae]
Length = 249
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 24/244 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS--LVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+ LQ ++I+ + + + LVAVSK + + A GQ F EN +Q
Sbjct: 5 DIKGGLQNVWKRIDEVLLHRSQDIKTARPVLVAVSKTKPADAVIEAYQAGQRDFGENYVQ 64
Query: 60 EAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------ 110
E ++K + D++ FIG +QSNK+++++++ ++ + +
Sbjct: 65 ELEEKSRHPDIVAQCPDIRWHFIGHMQSNKINKVLAVPNLYMIQTVDSQKLATKLDAAWS 124
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA--- 166
+ L V IQ+NT E KSGI P + + L + G+M I
Sbjct: 125 KVQPPKDEPLKVLIQINTSGEDVKSGIEPKEAPALFEFIKSNLKHLKLMGIMTIGAYGFD 184
Query: 167 -MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F L ++ R C+ L SMGM+ D++ AI G+T VR+G+ IFG
Sbjct: 185 YSNGPNPDFVSLMQVHRSICEGNSLAPESVLVSMGMSNDYDRAIEMGSTVVRVGTSIFGY 244
Query: 218 RPCQ 221
R +
Sbjct: 245 RAAK 248
>gi|228922653|ref|ZP_04085953.1| hypothetical protein bthur0011_36380 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228960118|ref|ZP_04121782.1| hypothetical protein bthur0005_35890 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229111370|ref|ZP_04240923.1| hypothetical protein bcere0018_36160 [Bacillus cereus Rock1-15]
gi|229129178|ref|ZP_04258151.1| hypothetical protein bcere0015_36230 [Bacillus cereus BDRD-Cer4]
gi|229146472|ref|ZP_04274843.1| hypothetical protein bcere0012_36150 [Bacillus cereus BDRD-ST24]
gi|228637105|gb|EEK93564.1| hypothetical protein bcere0012_36150 [Bacillus cereus BDRD-ST24]
gi|228654415|gb|EEL10280.1| hypothetical protein bcere0015_36230 [Bacillus cereus BDRD-Cer4]
gi|228672146|gb|EEL27437.1| hypothetical protein bcere0018_36160 [Bacillus cereus Rock1-15]
gi|228799634|gb|EEM46587.1| hypothetical protein bthur0005_35890 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228837082|gb|EEM82423.1| hypothetical protein bthur0011_36380 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 200
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|312378867|gb|EFR25319.1| hypothetical protein AND_09463 [Anopheles darlingi]
Length = 255
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 27/242 (11%)
Query: 7 LQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++ QKI+ +A LVAVSK + I A S GQ F EN +QE +K
Sbjct: 10 IRETLQKIDQVYAAKSPTSNAPKPLLVAVSKTKPIELILDAYSVGQRHFGENYVQELVEK 69
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA---------SLLSLE 112
R + D++ FIG LQSNK+++I++L ++ + T L E
Sbjct: 70 ANDERILEQCKDIRWHFIGHLQSNKINKILNLPNLHMIQTVHSTKLAEGLNKAWEKLKTE 129
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN-- 169
+ L V +Q+NT E +K+G+ P + Q L+ +G+M I +
Sbjct: 130 HPETQAKLNVLVQINTSGEDEKNGVQPGDAVELYRYVLEQCPNLSCDGVMTIGRFGHDYS 189
Query: 170 --PKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P P F L + + T ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 190 TGPNPDFGTLMKCHEQICCTFERDPAEVQVSMGMSDDFVQAIEEGSTIVRVGSSIFGARA 249
Query: 220 CQ 221
+
Sbjct: 250 KK 251
>gi|194905647|ref|XP_001981231.1| GG11955 [Drosophila erecta]
gi|190655869|gb|EDV53101.1| GG11955 [Drosophila erecta]
Length = 254
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 104/247 (42%), Gaps = 30/247 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ + V LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDEVLLQ---RPKEVQAARPLLVAVSKTKPAEAVIEAYEAGQRDFGEN 66
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE ++K K D++ FIG +Q+NK++++ V +I+TV EK A+ L
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQTNKINKVLAVPNLRMIQTVDSEKLATKLDA 126
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-----MCIPPA 166
K+ +QV + Q + N++ L M I
Sbjct: 127 AWSKRQPAPAEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIRSNLKHLNLTGIMTIGAF 186
Query: 167 ----MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGI 214
P P F L ++ R C+ L SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYSKGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQ 221
FG R +
Sbjct: 247 FGHRAAK 253
>gi|188036273|pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From
Bifidobacterium Adolescentis
Length = 282
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 64/247 (25%), Positives = 99/247 (40%), Gaps = 31/247 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVT 84
Query: 63 KKWIPLRKEW-------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
K L + + IG LQSNK+ +++ + D IE+V
Sbjct: 85 AKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSI 144
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A +S + + + V ++VN E KSG P + ++GL I
Sbjct: 145 DLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLXTI 204
Query: 164 PPAMGNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIASGATSVRIG 211
+ + S + + L +LS G T D ELAIA G+T VR+G
Sbjct: 205 GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVG 264
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 265 TAIFGER 271
>gi|317157756|ref|XP_003190876.1| alanine racemase family protein [Aspergillus oryzae RIB40]
Length = 282
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 97/251 (38%), Gaps = 31/251 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L ++ +A A + + L+AVSK+ + + +
Sbjct: 26 TLLSNLGSVTSRVTAAATKAAKESRPIRLIAVSKLKPAADVLALHQPPASHLHFGENYLQ 85
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL------------FDVIETVSREKTASLL 109
+ + ++ FIG LQSNK + + +
Sbjct: 86 ELQEKSKLLPPTIKWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDKGWGERSE 145
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCI---- 163
L Q L V++QVNT E KSG+ P + + +L ++G+M I
Sbjct: 146 ELRATDQESQLRVFVQVNTSGEENKSGVDPVSGAVSLCRFIREKCPRLKLQGVMTIGAIA 205
Query: 164 ---PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSVRI 210
F L E I RE KL +LSMGM+ DFE AIA G+ VR+
Sbjct: 206 RSKATTPETENEDFVCLRETRDRIVRELKLEGEDARLELSMGMSEDFEGAIALGSDEVRV 265
Query: 211 GSGIFGERPCQ 221
G+ IFGERP +
Sbjct: 266 GTTIFGERPPK 276
>gi|297380235|gb|ADI35122.1| conserved hypothetical protein [Helicobacter pylori v225d]
Length = 222
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENRVQDLKM 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 K-AQSLDHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|15806385|ref|NP_295091.1| hypothetical protein DR_1368 [Deinococcus radiodurans R1]
gi|12230836|sp|Q9RUL6|Y1368_DEIRA RecName: Full=UPF0001 protein DR_1368
gi|6459124|gb|AAF10940.1|AE001983_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 209
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 13/218 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQ 59
MS+ I + A R +V LVAV+K +IR L+ G AEN+ Q
Sbjct: 1 MSVP----AVLAGIREAEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K + FIG LQ NK+ + ++ ++ A ++ + +
Sbjct: 57 ELRDKVA---GLPGAEWHFIGPLQRNKIKYLRG-VTLVHSIEEPWQAQAIADAAAEWGQA 112
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLL 177
V +Q E QK G++P+ + R L V GLM + P + F
Sbjct: 113 PAVLLQ-RHNGEGQKHGVLPDDLPAVLREVRATG-LEVRGLMAMAPYDDEARAAQVFADT 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ A++ L +LSMGM+ D+ LA+A+GAT VR+G +F
Sbjct: 171 ARQAQDLGLVELSMGMSGDYPLAVAAGATLVRVGRSLF 208
>gi|317180141|dbj|BAJ57927.1| hypothetical protein HPF32_0345 [Helicobacter pylori F32]
Length = 222
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 8/217 (3%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K K
Sbjct: 6 QRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENRVQDLKIK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 65 MHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNAL 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---SE 179
+QVN+ YE KSG+MP +T + L ++GLMCI + K +
Sbjct: 124 LQVNSAYEESKSGVMPEETLEIYSQISETCKCLKLKGLMCIGAHADDEKKIEKSFITTKK 183
Query: 180 IARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 184 LFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|229031532|ref|ZP_04187532.1| hypothetical protein bcere0028_35860 [Bacillus cereus AH1271]
gi|228729821|gb|EEL80801.1| hypothetical protein bcere0028_35860 [Bacillus cereus AH1271]
Length = 200
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEETISF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------ECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ + E +L +LSMGM+
Sbjct: 117 IQSLQELDKVEVVGLMTMAPFTEEEEEIRRCFKELRKLQTEVQELELLHAPCRELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|315586948|gb|ADU41329.1| YggS family pyridoxal phosphate enzyme [Helicobacter pylori 35A]
Length = 222
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMRSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P +T + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVVPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|228909726|ref|ZP_04073549.1| hypothetical protein bthur0013_38780 [Bacillus thuringiensis IBL
200]
gi|228850015|gb|EEM94846.1| hypothetical protein bthur0013_38780 [Bacillus thuringiensis IBL
200]
Length = 200
Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|228940989|ref|ZP_04103547.1| hypothetical protein bthur0008_36290 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973920|ref|ZP_04134495.1| hypothetical protein bthur0003_36750 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980509|ref|ZP_04140819.1| hypothetical protein bthur0002_36770 [Bacillus thuringiensis Bt407]
gi|228779329|gb|EEM27586.1| hypothetical protein bthur0002_36770 [Bacillus thuringiensis Bt407]
gi|228785786|gb|EEM33790.1| hypothetical protein bthur0003_36750 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818668|gb|EEM64735.1| hypothetical protein bthur0008_36290 [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 200
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTKVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|261838392|gb|ACX98158.1| hypothetical protein KHP_0961 [Helicobacter pylori 51]
Length = 222
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEKSKSGVMPEETLEVYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|308062334|gb|ADO04222.1| hypothetical protein HPCU_05365 [Helicobacter pylori Cuz20]
Length = 222
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|323452956|gb|EGB08829.1| hypothetical protein AURANDRAFT_14200 [Aureococcus anophagefferens]
Length = 213
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/211 (32%), Positives = 94/211 (44%), Gaps = 17/211 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRFIGSLQSNK 86
+L+AVSK+ I A + G V F EN +QE +K + + + FIG LQSNK
Sbjct: 3 PTLLAVSKLKPLSLIAAAHAAGHVDFGENYVQELVEKAAAVEDGVEHLKWHFIGRLQSNK 62
Query: 87 VSEIVSLFDVIETVSREKTASLLS-----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
V ++ + + + + E+ + L V++QVNT E K G P
Sbjct: 63 VRQLCGVKRLEAVHTVSSEKLVAKLDGAWPELQPGAGPLKVFVQVNTSGEEAKGGCEPAD 122
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIAR--------ECKLTKLS 190
L L +EGLMCI G+ P F L + E LS
Sbjct: 123 APALAKLAAAAPNLQLEGLMCIGKYSGAEGDASPDFVCLRDCRDAAAAALGVEPASLGLS 182
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGM+ DFE AI AT VR+GS IFG RP +
Sbjct: 183 MGMSHDFETAIEHDATHVRVGSTIFGARPAK 213
>gi|195505095|ref|XP_002099361.1| GE23404 [Drosophila yakuba]
gi|194185462|gb|EDW99073.1| GE23404 [Drosophila yakuba]
Length = 254
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 30/247 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ + V+ LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDEVLLQ---RPKEVAAARPLLVAVSKTKPAEAVIEAYEAGQRDFGEN 66
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSE--IVSLFDVIETVSREKTASLLSL 111
+QE ++K K D++ FIG +QSNK+++ V +I+TV EK A+ L
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKVLSVPNLRMIQTVDSEKLATKLDA 126
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-----MCIPPA 166
KQ +QV + Q + N++ L M I
Sbjct: 127 AWSKQQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQFIRSNLKHLNLLGIMTIGAY 186
Query: 167 ----MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGI 214
P P F L ++ R C+ L SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYSNGPNPDFVSLMQVHRAICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQ 221
FG R +
Sbjct: 247 FGHRAAK 253
>gi|229174567|ref|ZP_04302097.1| hypothetical protein bcere0006_36580 [Bacillus cereus MM3]
gi|228608872|gb|EEK66164.1| hypothetical protein bcere0006_36580 [Bacillus cereus MM3]
Length = 200
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNESFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + ++QV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFVQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELCMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|208434955|ref|YP_002266621.1| hypothetical protein HPG27_1002 [Helicobacter pylori G27]
gi|208432884|gb|ACI27755.1| hypothetical protein HPG27_1002 [Helicobacter pylori G27]
Length = 222
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P + + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|158316849|ref|YP_001509357.1| PLP-binding domain-containing protein [Frankia sp. EAN1pec]
gi|158112254|gb|ABW14451.1| putative enzyme with PLP-binding domain [Frankia sp. EAN1pec]
Length = 319
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/300 (20%), Positives = 94/300 (31%), Gaps = 84/300 (28%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA-------- 54
L +L V + +I +A A R ++L+AVSK ++ + ++ G FA
Sbjct: 16 LRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVALGVRHFAENREQEAG 75
Query: 55 --------------------ENKLQEAKKKWI-----------------------PLRKE 71
+ + P
Sbjct: 76 PKTEAVRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRPSRVDQGPTLGPAAGP 135
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
F+G LQ NK + +++V R + LS + R + V IQVN
Sbjct: 136 DVPVWHFVGQLQRNKARAVAGWVHCVQSVDRARLVEALSRAATARGRQISVCIQVNLDIA 195
Query: 132 IQKSG----------------------------IMPNQTKDFVILCRQKYQLNVEGLMCI 163
+P L L + G+M +
Sbjct: 196 EPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAELVAGSEGLVLTGVMAV 255
Query: 164 PPAMGNPKPHFYLLSEIAREC----KLTKL-SMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L E+A L S GM+ D E A+A GAT +RIG+ +FGER
Sbjct: 256 APRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAEGATHLRIGTALFGER 315
>gi|317014443|gb|ADU81879.1| hypothetical protein HPGAM_05440 [Helicobacter pylori Gambia94/24]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDTLITKIEKARIAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALNIEKRCETLGVTLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P + + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDEKKIERSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|109947055|ref|YP_664283.1| hypothetical protein Hac_0453 [Helicobacter acinonychis str.
Sheeba]
gi|109714276|emb|CAJ99284.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 67/218 (30%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VA+SK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDFLIAKIEKARIAYSRH-HIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + ++ +GSLQ NK++ ++S ++ ++ + A + L
Sbjct: 64 KM-HYLEHLPLEWHMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+ P +T DF + + ++GLMCI +
Sbjct: 123 LLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKGLMCIGAHTDDEAKIEKSFIMTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLF 220
>gi|291455932|ref|ZP_06595322.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium breve DSM
20213]
gi|291382341|gb|EFE89859.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium breve DSM
20213]
Length = 295
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/270 (22%), Positives = 102/270 (37%), Gaps = 54/270 (20%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+S G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIAAAESMAGREAGSVQLLAATKTRDVGEIMAAISAGIHLIGENRPQEVT 82
Query: 63 KKWI------------------------------------------PLRKEWDVQLRFIG 80
K + IG
Sbjct: 83 VKAPGLTRLLSERGMSLGVIGGAGAFNGAAASGAANGVGDSDSTGASANAANHISFHLIG 142
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NK+ +++ + + IE+V + A ++ + + V ++VN E KSG P+
Sbjct: 143 QLQANKIGKVLPVVNTIESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPS 202
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE------------CKLTK 188
D L ++GLM I + + + + + R +
Sbjct: 203 HAIDLAQRIGAMGGLELQGLMTIGAHVDDERAIRAGFAHLRRTRDQILASGAEGTASCKE 262
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D AI G+T VR+G+ IFGER
Sbjct: 263 LSMGMTHDMAYAIEEGSTIVRVGTAIFGER 292
>gi|210135218|ref|YP_002301657.1| hypothetical protein HPP12_1025 [Helicobacter pylori P12]
gi|210133186|gb|ACJ08177.1| hypothetical protein HPP12_1025 [Helicobacter pylori P12]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 RQKIDTLITKIEKARTAYSRH-HIVKIVAVSKNAPPEAIQHYYNCSQRAFGENRVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P +T + +L ++GLMCI +
Sbjct: 123 LLQVNSTYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHADDETKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|317178637|dbj|BAJ56425.1| hypothetical protein HPF30_0328 [Helicobacter pylori F30]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQKNKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFERLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|257067989|ref|YP_003154244.1| pyridoxal phosphate enzyme, YggS family [Brachybacterium faecium
DSM 4810]
gi|256558807|gb|ACU84654.1| pyridoxal phosphate enzyme, YggS family [Brachybacterium faecium
DSM 4810]
Length = 252
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 103/235 (43%), Gaps = 17/235 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-----GQVIFAENK 57
L +L +++++A A R ++++ +KM +I VA+ +V EN+
Sbjct: 18 LAARLDEVLARLDDAAARAGRDSREITVLLATKMRTPPEIAVAIELLRERGRRVAVGENR 77
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QE K PL + V FIG LQ+NK ++V+ + I +V R+ A L
Sbjct: 78 AQEISKHADPLLADNGVPRHFIGRLQTNKARDVVAFAETIHSVDRDGIADALERRAETAG 137
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPKPHFY 175
V +QVNT E K G P ++ R L GLM I +
Sbjct: 138 VQRDVLVQVNTSGEESKGGFAPTAEAIAPMVQRLLASPVLRPVGLMTIGANTSDAGAVRD 197
Query: 176 LLSEIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + R L +LSMGM+ D E+A+ GAT VR+GS IFG RP
Sbjct: 198 SLQLLRRLRDAVREQTGAEHLAELSMGMSGDLEIAVEEGATIVRVGSAIFGARPA 252
>gi|17533025|ref|NP_495001.1| hypothetical protein F09E5.8 [Caenorhabditis elegans]
gi|1731185|sp|P52057|PROSC_CAEEL RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|1019957|gb|AAA79348.1| Hypothetical protein F09E5.8 [Caenorhabditis elegans]
Length = 244
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/243 (27%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 1 MSL---GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ L + + ++ + A + LVAVSK + I S Q F EN
Sbjct: 1 MSIEIVQKSLFNIIEAVADA-VTASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENY 59
Query: 58 LQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---- 112
+QE ++K L + D++ FIG +QSNK+ +I + + + E +
Sbjct: 60 VQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKICNSPGLWCVETVETEKHARIFDKEWS 119
Query: 113 -MIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
L V +QVNT E K GI K + ++ L +G M I +
Sbjct: 120 KHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSH 179
Query: 171 ----KPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L ++ + +LSMGM+ DF AI GATSVR+GS +FG R
Sbjct: 180 ASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAR 239
Query: 219 PCQ 221
+
Sbjct: 240 EYK 242
>gi|261839792|gb|ACX99557.1| hypothetical protein HPKB_0988 [Helicobacter pylori 52]
gi|332673860|gb|AEE70677.1| YggS family pyridoxal phosphate enzyme [Helicobacter pylori 83]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|114778110|ref|ZP_01452997.1| hypothetical protein SPV1_00592 [Mariprofundus ferrooxydans PV-1]
gi|114551528|gb|EAU54082.1| hypothetical protein SPV1_00592 [Mariprofundus ferrooxydans PV-1]
Length = 227
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 90/198 (45%), Gaps = 12/198 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
D VS++A+SK ++ + GQ F E++ Q + + + D Q IG LQ
Sbjct: 27 DADGVSMLAISKYAPDSAVQALIDQGQRCFGESRPQALRDRALRWP---DCQWHMIGPLQ 83
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK + + + TA+ ++ + + LPV IQVN + G+ P +
Sbjct: 84 KNKAKYVARHAAMWHSCEDIDTAAAVARHLDGRR--LPVLIQVNIAANPAQHGVNPAALQ 141
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFE 198
F L + GLM + P G+ F + ++ E L LSMGM+ D+
Sbjct: 142 TFAAELNAIDGLELRGLMAMAPLDGDVGEAFTAMRDLRDELFGGSVGL--LSMGMSHDYR 199
Query: 199 LAIASGATSVRIGSGIFG 216
A+A+GA VR+GS +FG
Sbjct: 200 AAVAAGANMVRLGSTLFG 217
>gi|317177809|dbj|BAJ55598.1| hypothetical protein HPF16_1001 [Helicobacter pylori F16]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMRSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP + + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEEMLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|45187572|ref|NP_983795.1| ADL301Cp [Ashbya gossypii ATCC 10895]
gi|44982310|gb|AAS51619.1| ADL301Cp [Ashbya gossypii ATCC 10895]
Length = 268
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKW 65
V +++ S R + V L+AVSK+ + + + G F EN +QE K
Sbjct: 36 YSVVDERVSRSMEECGRRRSEVLLLAVSKLKPASDVAILYEEMGLRHFGENYVQELVGKA 95
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSE-----IVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
D+Q FIG+LQSNK + + + I+++ + + + + +
Sbjct: 96 AE--LPGDIQWHFIGALQSNKCKDLAKVVNLHAVETIDSLKKARKLEEARAKFQPDAPAI 153
Query: 121 PVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-- 175
I+VNT E QK+G+ L + + GLM I +
Sbjct: 154 LCSIEVNTSGEAQKAGVSDEAELCELVEFFLSEDAKHVRLRGLMTIGSWDASHAADGENP 213
Query: 176 LLSEIAR-------ECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +A+ + L +LSMGM+ DF A+ G++ VRIG+ IFG RP +
Sbjct: 214 EFAALAKWKRVLDGKYGLNLELSMGMSADFAAAMRQGSSEVRIGTDIFGARPAR 267
>gi|15612051|ref|NP_223703.1| hypothetical protein jhp0986 [Helicobacter pylori J99]
gi|11136004|sp|Q9ZKF2|Y395_HELPJ RecName: Full=UPF0001 protein jhp_0986
gi|4155573|gb|AAD06567.1| putative [Helicobacter pylori J99]
Length = 222
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDTLITKIEKARIAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P + + +L ++GLMCI +
Sbjct: 123 LLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|226500772|ref|NP_001152502.1| proline synthetase-like protein [Zea mays]
gi|195656949|gb|ACG47942.1| proline synthetase-like protein [Zea mays]
Length = 245
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 35 KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF 94
K +R G F+EN +QE K D + FIG LQSNKV +++
Sbjct: 42 KTKPVSMLRQLYDAGHRCFSENYVQEFVTKAPQ--LPQDTRWHFIGHLQSNKVKPLLAAV 99
Query: 95 DVIETVSREKTASLLSL----EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
++ V + + + L V +QVNT E KSGI P++ D +
Sbjct: 100 PNLDMVEGVDNEKIANHLDRAVNSLGRQPLKVLVQVNTSGEESKSGIDPSKCVDLAKHVK 159
Query: 151 -QKYQLNVEGLMCIPPAMGNPKPHFYLLS-----EIARECKLT----KLSMGMTRDFELA 200
L GLM I + P + E+ + + +LSMGM+ DFE A
Sbjct: 160 LACPHLIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKALDIPTEQFELSMGMSGDFEQA 219
Query: 201 IASGATSVRIGSGIFGERPCQ 221
I G+T+VRIGS IFG R
Sbjct: 220 IEMGSTNVRIGSTIFGPREYP 240
>gi|229075657|ref|ZP_04208639.1| hypothetical protein bcere0024_36220 [Bacillus cereus Rock4-18]
gi|229098371|ref|ZP_04229316.1| hypothetical protein bcere0020_36040 [Bacillus cereus Rock3-29]
gi|229104463|ref|ZP_04235130.1| hypothetical protein bcere0019_36090 [Bacillus cereus Rock3-28]
gi|229117397|ref|ZP_04246773.1| hypothetical protein bcere0017_36750 [Bacillus cereus Rock1-3]
gi|228666007|gb|EEL21473.1| hypothetical protein bcere0017_36750 [Bacillus cereus Rock1-3]
gi|228678905|gb|EEL33115.1| hypothetical protein bcere0019_36090 [Bacillus cereus Rock3-28]
gi|228684988|gb|EEL38921.1| hypothetical protein bcere0020_36040 [Bacillus cereus Rock3-29]
gi|228707433|gb|EEL59624.1| hypothetical protein bcere0024_36220 [Bacillus cereus Rock4-18]
Length = 200
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVMEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------ECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + ++ + E L +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEVRRCFKDLRKLQIEVQELNLLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|317009668|gb|ADU80248.1| hypothetical protein HPIN_05220 [Helicobacter pylori India7]
Length = 222
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLITKIEKARTAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L + GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLRGLMCIGAHADDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASILSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|317012832|gb|ADU83440.1| hypothetical protein HPLT_05240 [Helicobacter pylori Lithuania75]
Length = 222
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 RQRIDTLIAKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENRVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALNIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|45550861|ref|NP_651776.2| CG1983 [Drosophila melanogaster]
gi|28316960|gb|AAO39501.1| RE46560p [Drosophila melanogaster]
gi|45446716|gb|AAF57017.2| CG1983 [Drosophila melanogaster]
gi|220948568|gb|ACL86827.1| CG1983-PA [synthetic construct]
gi|220957842|gb|ACL91464.1| CG1983-PA [synthetic construct]
Length = 254
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 106/247 (42%), Gaps = 30/247 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ + V LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDEVLLQ---RPKEVQAARPLLVAVSKTKPAEAVIEAYEGGQRDFGEN 66
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS--- 110
+QE ++K K D++ FIG +QSNK+++I+S+ ++ + +
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDA 126
Query: 111 ---LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA 166
L V IQ+NT E KSGI + LN+ G+M I
Sbjct: 127 AWSKRQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAF 186
Query: 167 ----MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGI 214
P P F L ++ R C+ L SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYSNGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQ 221
FG R +
Sbjct: 247 FGHRAAK 253
>gi|254779613|ref|YP_003057719.1| hypothetical protein HELPY_1030 [Helicobacter pylori B38]
gi|254001525|emb|CAX29543.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 222
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLITKIEKARIAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|328950415|ref|YP_004367750.1| protein of unknown function UPF0001 [Marinithermus hydrothermalis
DSM 14884]
gi|328450739|gb|AEB11640.1| protein of unknown function UPF0001 [Marinithermus hydrothermalis
DSM 14884]
Length = 214
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 26 DSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
DSV LVAV+K ++I R L+ G E+++QEA+ K V+ FIG LQ
Sbjct: 22 DSVRLVAVTKGRTLEEIQRCVLAYGNFPLGESRVQEARPKMEA---LSGVEWHFIGPLQR 78
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + ++ ++ + A L+ ++ V +QVN E QK G+ + D
Sbjct: 79 NKVKFMRPF-ALVHSIDSVRLAQALARRAAREGWRARVLLQVNVAREPQKHGVFVEELAD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI---ARECKLTKLSMGMTRDFELAI 201
V R+ L + GLM + P P+ ++ E+ A L + SMGMT DFE+A+
Sbjct: 138 AVARVRELEALELVGLMTMAPYTERPEEVRWVFRELSRLADRYNLAERSMGMTGDFEVAV 197
Query: 202 ASGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 198 EEGATLVRVGRALF 211
>gi|328858513|gb|EGG07625.1| hypothetical protein MELLADRAFT_62402 [Melampsora larici-populina
98AG31]
Length = 262
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ ++ +++++N+A R V LVAVSK+ + I G +
Sbjct: 19 MT---NVKKIQEEVQNAAQ--GRN---VRLVAVSKLKPASDILGLYE-GIQHLHFGENYV 69
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR---------EKTASLLSL 111
++ D++ FIG+LQ+NK + S+ ++ + K+ S LS
Sbjct: 70 SELVEKAKLLPQDIKWHFIGALQTNKCKILGSIPNLFAVETVDTIKKAEALNKSRSQLSQ 129
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF---------VILCRQKYQLNVEGLMC 162
L +YIQ+NT E+ KSGI Q + L + GLM
Sbjct: 130 TSCNPIAKLKIYIQINTSNELNKSGIKVEQESIEDTSELILLSNYIKEDCESLELSGLMT 189
Query: 163 IPPAMGNP-----KPHFYLLSEIARECKLTK------LSMGMTRDFELAIASGATSVRIG 211
I + F+ L +I + LSMGM+ DF LAI G+ +VR+G
Sbjct: 190 IGSFKESTTDSDFNEDFHRLIKIRNLLEDKIGIKPLGLSMGMSSDFSLAIRMGSDNVRVG 249
Query: 212 SGIFGERPC 220
S IFGERP
Sbjct: 250 SKIFGERPP 258
>gi|154322825|ref|XP_001560727.1| hypothetical protein BC1G_00755 [Botryotinia fuckeliana B05.10]
gi|150848089|gb|EDN23282.1| hypothetical protein BC1G_00755 [Botryotinia fuckeliana B05.10]
Length = 265
Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 105/247 (42%), Gaps = 34/247 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+L + Q +++ N+A +V LVAVSK+ + I F EN QE
Sbjct: 12 TLISAFQSVSERVTNAA-----GTRNVRLVAVSKLKPATDILALHEQANVEHFGENYAQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL--------- 111
+K ++ FIG LQSNK + S + VS + S
Sbjct: 67 LMEKAE--ILPRSIKWHFIGGLQSNKCKPLASTVFNLHLVSSIDSQKKASQLSLGRSLLP 124
Query: 112 ---EMIKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPA 166
+ L ++IQ+NT E KSG+ P + T+ + + L + G M I
Sbjct: 125 MPADSNSPPSPLNIHIQLNTSGESSKSGVSPGKDTTELCKYVIEECPYLKLVGFMTIGAI 184
Query: 167 ------MGNPKPHFYLLSE----IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGI 214
G F +L E + +E L +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 185 ARSQMKEGEENEDFKVLREERDRVEKELGLEGLELSMGMSEDFEEAIRQGSGEVRVGSTI 244
Query: 215 FGERPCQ 221
FG+RP +
Sbjct: 245 FGQRPAK 251
>gi|163841224|ref|YP_001625629.1| putative cytoplasmic protein [Renibacterium salmoninarum ATCC
33209]
gi|162954700|gb|ABY24215.1| hypothetical cytosolic protein [Renibacterium salmoninarum ATCC
33209]
Length = 246
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 19/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG L KQ+I + + R D+ L+ V+K + + + G + EN+ QEA
Sbjct: 10 LGANLDAVKQRIAVAVSASGR-VDTPQLIVVTKFHPAADVALLADLGVMEVGENRDQEAA 68
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI------K 115
K R D+ FIG LQ+NK + + +V R L+ +
Sbjct: 69 AKQAELARAGIDLHWHFIGQLQTNKAKSVARYAYSVHSVDRPALVQALAKAVTAELAAGH 128
Query: 116 QSRFLPVYIQVNTGY------EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+S L +QV+ + G P++ L + G+M + P +
Sbjct: 129 RSTTLGCLVQVDLDPLELVPGSSPRGGARPHEVLAIADEIVAADSLELLGVMAVTPLGAD 188
Query: 170 PKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F L+ I R +S GM+ D AI GAT +R+GS + G RP
Sbjct: 189 PDEAFSRLATISAELVNRHPAAKAISAGMSGDLAAAIKHGATHLRVGSDVLGPRPA 244
>gi|242059919|ref|XP_002459105.1| hypothetical protein SORBIDRAFT_03g045890 [Sorghum bicolor]
gi|241931080|gb|EES04225.1| hypothetical protein SORBIDRAFT_03g045890 [Sorghum bicolor]
Length = 248
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
Query: 35 KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF 94
K ++ G F EN +QE K DV+ FIG LQSNKV +++
Sbjct: 45 KTKPVSMLQQLYDAGHRCFGENYVQEFVTKAPQ--LPEDVRWHFIGHLQSNKVKPLLAAV 102
Query: 95 DVIETVSREKTASLLSL----EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
++ V + + L V +QVNT E KSGI P++ D +
Sbjct: 103 PNLDMVEGVDNEKIANHLDRAVNSLGREPLKVLVQVNTSGEESKSGIDPSKCVDLAKHVK 162
Query: 151 -QKYQLNVEGLMCIPPAMGNPKPHFYLLS-----EIARECKLT----KLSMGMTRDFELA 200
L GLM I + P + E+ + + +LSMGM+ DFE A
Sbjct: 163 LACPHLIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKALDIPTEQFELSMGMSGDFEQA 222
Query: 201 IASGATSVRIGSGIFGERPCQ 221
I G+T+VRIGS IFG R
Sbjct: 223 IEMGSTNVRIGSTIFGPREYP 243
>gi|307637721|gb|ADN80171.1| hypothetical protein hp908_1048 [Helicobacter pylori 908]
gi|325996324|gb|ADZ51729.1| Hypothetical protein hp2018_1015 [Helicobacter pylori 2018]
gi|325997913|gb|ADZ50121.1| hypothetical protein hp2017_1011 [Helicobacter pylori 2017]
Length = 222
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDTLITKIEKARTAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCETLGVTLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P + + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVVPEEALEIYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|51013199|gb|AAT92893.1| YBL036C [Saccharomyces cerevisiae]
Length = 257
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 22/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SREKTASLLSLEMIK 115
+ D++ FIG LQ+NK ++ + ++ + K + +
Sbjct: 75 LIE--KAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAM----- 167
+ +Q+NT +E QKSG+ L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHED 192
Query: 168 GNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 193 SKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 251
>gi|6319435|ref|NP_009517.1| hypothetical protein YBL036C [Saccharomyces cerevisiae S288c]
gi|586419|sp|P38197|YBD6_YEAST RecName: Full=UPF0001 protein YBL036C
gi|157830174|pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
gi|463272|emb|CAA55058.1| YBL0413 [Saccharomyces cerevisiae]
gi|536047|emb|CAA84856.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810298|tpg|DAA07083.1| TPA: hypothetical protein YBL036C [Saccharomyces cerevisiae S288c]
Length = 257
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 22/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SREKTASLLSLEMIK 115
+ D++ FIG LQ+NK ++ + ++ + K + +
Sbjct: 75 LIE--KAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAM----- 167
+ +Q+NT +E QKSG+ L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHED 192
Query: 168 GNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 193 SKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 251
>gi|15645023|ref|NP_207193.1| hypothetical protein HP0395 [Helicobacter pylori 26695]
gi|3183222|sp|O25156|Y395_HELPY RecName: Full=UPF0001 protein HP_0395
gi|2313495|gb|AAD07459.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 222
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDALITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG++P + + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|217034324|ref|ZP_03439740.1| hypothetical protein HP9810_491g17 [Helicobacter pylori 98-10]
gi|216943209|gb|EEC22676.1| hypothetical protein HP9810_491g17 [Helicobacter pylori 98-10]
Length = 222
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 72/218 (33%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE-KTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++SL + K A + L
Sbjct: 64 KMRSLEHL-PLEWHMIGSLQENKINALLSLKSALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|228916538|ref|ZP_04080104.1| hypothetical protein bthur0012_37530 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928949|ref|ZP_04091981.1| hypothetical protein bthur0010_36410 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935216|ref|ZP_04098042.1| hypothetical protein bthur0009_36680 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947620|ref|ZP_04109910.1| hypothetical protein bthur0007_37480 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123414|ref|ZP_04252618.1| hypothetical protein bcere0016_37030 [Bacillus cereus 95/8201]
gi|229186141|ref|ZP_04313310.1| hypothetical protein bcere0004_36880 [Bacillus cereus BGSC 6E1]
gi|228597317|gb|EEK54968.1| hypothetical protein bcere0004_36880 [Bacillus cereus BGSC 6E1]
gi|228660190|gb|EEL15826.1| hypothetical protein bcere0016_37030 [Bacillus cereus 95/8201]
gi|228812140|gb|EEM58471.1| hypothetical protein bthur0007_37480 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824381|gb|EEM70187.1| hypothetical protein bthur0009_36680 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830756|gb|EEM76361.1| hypothetical protein bthur0010_36410 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843117|gb|EEM88199.1| hypothetical protein bthur0012_37530 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 200
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + ++ + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RANKKVKCFIQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---RECK--------LTKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E + +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQKEVQGLELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|225181691|ref|ZP_03735131.1| alanine racemase domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167672|gb|EEG76483.1| alanine racemase domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 188
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 69/191 (36%), Positives = 95/191 (49%), Gaps = 11/191 (5%)
Query: 37 VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
V + + AL G F EN++QEA K Q FIG LQ+NK E+V F +
Sbjct: 1 VSQEVVGQALELGLNTFGENRVQEALPKVAAFP---GAQWHFIGRLQTNKAKEVVGHFAL 57
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ +V R + L + +Q + IQVN G E QK GI P + +DF+ Q L
Sbjct: 58 VHSVDRWRLVQALQKQAQEQETVVRALIQVNVGGEGQKGGISPTELQDFLAETVQCKNLQ 117
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSV 208
+EGLM IPP NP+ E+ + + LSMGM+ D+ +A+ GA V
Sbjct: 118 IEGLMTIPPFTENPEDARPYFREMNRLFVECSNKGFPMKYLSMGMSNDYTVAVEEGANLV 177
Query: 209 RIGSGIFGERP 219
R+GS IFGER
Sbjct: 178 RVGSAIFGERN 188
>gi|11359716|pir||T46722 conserved hypothetical protein [imported] - Leishmania major
Length = 389
Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats.
Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+AVSK + + GQ +F EN +QE
Sbjct: 158 TLALNYKAVCDTVAQ--ESGNRR---VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQEL 212
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQ 116
+K D FIG LQSNKV E++ + V + + +
Sbjct: 213 GEKAKE--LPEDTVWHFIGHLQSNKVKELLEGVPNLRVVQTIDSENLASKVNEGCRKYRG 270
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIP-PAMGNPKPH 173
R L VYIQVNT E KSG P + + + L ++GLM I P + +
Sbjct: 271 GRPLEVYIQVNTSGEETKSGTEPGEATVTLAKYIADECPLLQLKGLMTIGMPDYTSRPEN 330
Query: 174 FYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L++ + +LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 331 FECLTKCREDVAQPVQMAPEDLELSMGMSGDYVNAIRMGSTAVRVGTSIFGQRYYP 386
>gi|229490375|ref|ZP_04384216.1| pyridoxal phosphate enzyme, YggS family [Rhodococcus erythropolis
SK121]
gi|229322665|gb|EEN88445.1| pyridoxal phosphate enzyme, YggS family [Rhodococcus erythropolis
SK121]
Length = 244
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 18/235 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + ++ + + A R V+L+ V+K + R+ G F E++ QEA
Sbjct: 6 ISTALDSVRARLAAACLAAGREVSDVALLPVTKFFPASDARILYELGCREFGESREQEAV 65
Query: 63 KKWIPLR-------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---- 111
+K + V+ IG LQ NK + I +V + A L
Sbjct: 66 EKVADFDGAAQTGAIDDPVRWHMIGQLQRNKARSVAKWAYAIHSVDSARLADALDRAALS 125
Query: 112 --EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+++ L IQV+ + + G+ + L GLM +PP +
Sbjct: 126 ALSDGERTEPLRALIQVSLDGDPARGGVPTGELTPLAERIESAEGLEFAGLMAVPPLGSD 185
Query: 170 PKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F +L + + T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 186 PDEQFEILRRAHLLILESHPRATELSAGMTGDLEAAVRHGSTCVRVGTALLGSRP 240
>gi|157869914|ref|XP_001683508.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68126573|emb|CAJ05058.1| putative alanine racemase [Leishmania major strain Friedlin]
Length = 245
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+AVSK + + GQ +F EN +QE
Sbjct: 14 TLALNYKAVCDTVAQ--ESGNRR---VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQ 116
+K D FIG LQSNKV E++ + V + + +
Sbjct: 69 GEKAKE--LPEDTVWHFIGHLQSNKVKELLEGVPNLRVVQTIDSENLASKVNEGCRKYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
R L VYIQVNT E KSG P + + + L ++GLM I +P
Sbjct: 127 GRPLEVYIQVNTSGEETKSGTEPGEATVTLAKYIADECPLLQLKGLMTIGMPDYTSRPEN 186
Query: 175 YLL-----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++A+ ++ +LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 187 FECLTKCREDVAQAVQMAPEDLELSMGMSGDYVNAIRMGSTAVRVGTSIFGQRYYP 242
>gi|139437185|ref|ZP_01771345.1| Hypothetical protein COLAER_00324 [Collinsella aerofaciens ATCC
25986]
gi|133776832|gb|EBA40652.1| Hypothetical protein COLAER_00324 [Collinsella aerofaciens ATCC
25986]
Length = 267
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 18/231 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A RP D+ SL+AVSK V + A+ G FAEN+ QE
Sbjct: 30 MRARREQILERFYAALDRAGRPHDAASLIAVSKTVGVDETVAAIQAGYRHFAENRPQELV 89
Query: 63 KKW---IPLRKEWDVQLRFIGSLQSNKVS------EIVSLFDVIETVSREKTASLLSLEM 113
+K + +V+ IG+LQ+NK++ E++ + + ++ +E
Sbjct: 90 RKLTGLAEHPELPEVRFDMIGNLQTNKINAVLGSAELIHSVGSLHLAQAISSRAVRKIEA 149
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPK 171
+ V I+VN E K G P++ + + + V+GLM + P +
Sbjct: 150 GELVGPQRVLIEVNVSGEESKRGFSPDEIRAAAGELAELEGICVQGLMTMAPRGNKDVAR 209
Query: 172 PHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E+ E L +LS GM+ DFE A+ G+T VR+G +F
Sbjct: 210 RTFAGLRELRDELEAAHPDLNLPELSCGMSEDFESALEEGSTLVRLGRVVF 260
>gi|319892176|ref|YP_004149051.1| YggS [Staphylococcus pseudintermedius HKU10-03]
gi|317161872|gb|ADV05415.1| YggS [Staphylococcus pseudintermedius HKU10-03]
Length = 224
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + I + + + ++A++K V + + A G F EN+++
Sbjct: 1 MSVKTNLAEIEHTITEN-VTFREDPTRPHVIAITKYVTINRAKEAYEAGIRHFGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV + FIGSLQS KV E+++ D + + R+ A +S + +
Sbjct: 60 FLEKKAA--LPDDVHMHFIGSLQSRKVKEVINDIDYLHALDRQSLAKEISK---RAEHEI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI + F+ + V GLM + P N + ++
Sbjct: 115 KCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPYTDNEAELEDIFEKL 174
Query: 181 ARE------CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ LT +LSMGM+ D+ +A GAT VRIG+ + G+
Sbjct: 175 KNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTRLVGK 222
>gi|226307034|ref|YP_002766994.1| hypothetical protein RER_35470 [Rhodococcus erythropolis PR4]
gi|226186151|dbj|BAH34255.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 249
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 95/235 (40%), Gaps = 18/235 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + ++ + + A R V+L+ V+K + R+ G F E++ QEA
Sbjct: 11 ISTALDSVRARLAAACLAAGREVSDVALLPVTKFFPASDARILYELGCREFGESREQEAV 70
Query: 63 KKWIPLR-------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---- 111
+K + V+ IG LQ NK + I +V + A L
Sbjct: 71 EKVADFDGAAQSGAIDDPVRWHMIGQLQRNKARSVAKWAYAIHSVDSARLADALDRAALG 130
Query: 112 --EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
++ L V IQV+ + + G+ + L GLM +PP +
Sbjct: 131 ALSDGERKAPLRVLIQVSLDGDPARGGVPTGELTPLAERIESAEGLEFAGLMAVPPLGSD 190
Query: 170 PKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F +L + + T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 191 PDEQFEILRRAHLLILESHPRATELSAGMTGDLEAAVRHGSTCVRVGTALLGSRP 245
>gi|320163280|gb|EFW40179.1| alanine racemase [Capsaspora owczarzaki ATCC 30864]
Length = 280
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 41/254 (16%)
Query: 7 LQVFKQKIENS-AILA-----------------KR---PKDSVSLVAVSKMVDSKKIRVA 45
L+ + ++ + A A R D+V LVAVSK + ++ A
Sbjct: 24 LEAVRGRMSAAVAKRAEKAASSASVSTSASDEHGRVAGEADAVRLVAVSKTKPNALLQAA 83
Query: 46 LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
GQ F EN +QE D+Q FIG LQSNK S + ++ ++ + +
Sbjct: 84 YGAGQRHFGENYVQELVA--KASGLPRDIQWHFIGHLQSNKASHVAAIPNLFVVETVDSV 141
Query: 106 AS----LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGL 160
+ + L V++QVNT E KSG + + L + GL
Sbjct: 142 KLATALEKACAKQTRDSPLRVFVQVNTSGETSKSGSNAAEAIAVARHIVNECPHLRLCGL 201
Query: 161 MCIPPA-----MGNPKPHFYLLSEIARE----CKLT----KLSMGMTRDFELAIASGATS 207
M I +P P F LL+EI ++ L +LS GM+ DFE AI+ G+T+
Sbjct: 202 MTIGQPGRQCSEASPNPDFLLLNEIRQQTAESLSLRAADLELSFGMSDDFEHAISMGSTN 261
Query: 208 VRIGSGIFGERPCQ 221
+R+GS IFG R
Sbjct: 262 IRVGSTIFGSRSYP 275
>gi|308184797|ref|YP_003928930.1| hypothetical protein HPSJM_05210 [Helicobacter pylori SJM180]
gi|308060717|gb|ADO02613.1| hypothetical protein HPSJM_05210 [Helicobacter pylori SJM180]
Length = 222
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 72/218 (33%), Positives = 107/218 (49%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDALITKIEKARIAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGINLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKKIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|331238864|ref|XP_003332086.1| alanine racemase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|309311076|gb|EFP87667.1| alanine racemase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 264
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 35/247 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQE 60
L N Q++E +A + R V LVAVSK+ + I G + F EN + E
Sbjct: 19 DLLNCFNNINQQVEQAA--SGR---EVRLVAVSKLKPASDILTLYRTTGHLHFGENYVSE 73
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-------LLSLEM 113
++K D++ FIG+LQSNK + ++ ++ + + L
Sbjct: 74 LQEKVKA--LPGDIKWHFIGALQSNKCKILGAIPNLFAVETVDSLHKAQLLEKSRSGLAS 131
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF---------VILCRQKYQLNVEGLMCIP 164
Q L VY+QVNT E K+G + + + + L + GLM I
Sbjct: 132 SVQVNPLEVYLQVNTSEEASKAGFITPSNEPILSSNLHSTAKYIKEECRWLKLAGLMTIG 191
Query: 165 PA-----MGNPKPHFYLLSEIAREC-----KLT-KLSMGMTRDFELAIASGATSVRIGSG 213
F L ++ + L LSMGM+ DF LAI G+ +VR+GS
Sbjct: 192 SIGQSKSDQGTNKDFERLVQLRDQLSESLGGLELGLSMGMSADFALAIKMGSDNVRVGSS 251
Query: 214 IFGERPC 220
IFGERP
Sbjct: 252 IFGERPP 258
>gi|151946358|gb|EDN64580.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190408862|gb|EDV12127.1| hypothetical protein SCRG_02999 [Saccharomyces cerevisiae RM11-1a]
gi|207347852|gb|EDZ73897.1| YBL036Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272725|gb|EEU07698.1| YBL036C-like protein [Saccharomyces cerevisiae JAY291]
gi|259144811|emb|CAY77750.1| EC1118_1B15_0870p [Saccharomyces cerevisiae EC1118]
gi|323338793|gb|EGA80008.1| YBL036C-like protein [Saccharomyces cerevisiae Vin13]
gi|323349874|gb|EGA84087.1| YBL036C-like protein [Saccharomyces cerevisiae Lalvin QA23]
Length = 257
Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/239 (24%), Positives = 94/239 (39%), Gaps = 22/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SREKTASLLSLEMIK 115
+ D++ FIG LQ+NK ++ + ++ + K + +
Sbjct: 75 LIE--KAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAM----- 167
+ +Q+NT E QKSG+ L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSREDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHED 192
Query: 168 GNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 193 SKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 251
>gi|326803768|ref|YP_004321586.1| pyridoxal phosphate enzyme, YggS family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651070|gb|AEA01253.1| pyridoxal phosphate enzyme, YggS family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 222
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 17/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + IE++ A + V+L+ VSK ++ CG FAEN +Q
Sbjct: 1 MTIQANVKQIEGIIEDTKQSAC-SSNKVTLICVSKYHSPEEAMAVYHCGIRHFAENYVQG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + DV IG LQS KV E+++ D + R K A + K+ +
Sbjct: 60 LLAKKAAMPD--DVIWHLIGPLQSRKVKEVINEIDYYHALDRIKIAKEIDKRAAKE---I 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++VN E K G+ +T F+ + ++ V GLM + P+ + + ++
Sbjct: 115 KCFVEVNISGETSKHGLTKEETLPFIKQLAEFKKIKVVGLMTMAPSAASDSEVQEIFRQL 174
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
A T+LSMGM++D+ LAI A+ +R+G+ F
Sbjct: 175 ASLRDQVADQQWMHAPCTELSMGMSQDYPLAIKERASFIRVGAAFF 220
>gi|311272383|ref|XP_003133416.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like isoform 1 [Sus scrofa]
Length = 234
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVS 88
A SK + + A + GQ IF EN +QE +K + +++ FIG LQ V+
Sbjct: 3 ACSKTKPADMVIEAYNHGQRIFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVN 62
Query: 89 EIVSLFDVIETVSREKTA----SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
+++++ ++ + + S + L V +QVNT E K G++P++T
Sbjct: 63 KLMAVPNLFMLETVDSMKLADKVNSSWQKKGSPERLKVMVQVNTSGEESKHGLLPSETVA 122
Query: 145 FVILCR-QKYQLNVEGLMCIPPAMGN----PKPHFYLL----SEIARECKLT----KLSM 191
V + + L GLM I + P P F +L E+ ++ + +LSM
Sbjct: 123 MVEHVKAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLVSLREELCQKLHIPVDQVELSM 182
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 183 GMSVDFQHAIEVGSTNVRIGSTIFGERDYS 212
>gi|126640948|ref|YP_001083932.1| hypothetical protein A1S_0898 [Acinetobacter baumannii ATCC 17978]
Length = 185
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 11/184 (5%)
Query: 46 LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
+ GQ F EN LQEA K L+ D++ FIG +Q NK + FD + V R
Sbjct: 2 YAAGQRAFGENYLQEALDKIDALQDL-DIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLII 60
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
A LS + L + +QVN + K G P + V Q ++ + GLM IP
Sbjct: 61 AERLSNQCGDDQAALNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPA 120
Query: 166 AMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K LSMGM+ D E AIA+G+T VR+G+ +FG
Sbjct: 121 PDNTAAFADA--KKLFDAVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGA 178
Query: 218 RPCQ 221
R
Sbjct: 179 RDYS 182
>gi|255325339|ref|ZP_05366445.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
tuberculostearicum SK141]
gi|255297904|gb|EET77215.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
tuberculostearicum SK141]
Length = 232
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 98/231 (42%), Gaps = 22/231 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L KIE A + R L+ V+K + I + G AEN+ QEA+
Sbjct: 8 LEHNLSATLAKIERLAAQSGRKP--PQLLPVTKFHPAADIALLAELGVTDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L + + IG +Q+ K + + + ++ K A L E ++
Sbjct: 66 AKATELPQL---RFHMIGQIQTKKANHVARWAASVHSLDSLKLAHALERGVSLAKERGER 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV+IQV+ + + G+ P + V + L + GLM +PP + F
Sbjct: 123 ESNLPVFIQVSADGDGARGGVSPEALDELVRAVEEAQHLELAGLMVVPPLDADAGEVFRN 182
Query: 177 LS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ E+ R K S GM+ D AIA+G+ VR+G+ I G RP
Sbjct: 183 VRGEVDRLSSELNRPLKF---SAGMSADMAEAIAAGSDIVRVGTSIMGPRP 230
>gi|261187897|ref|XP_002620366.1| alanine racemase [Ajellomyces dermatitidis SLH14081]
gi|239593483|gb|EEQ76064.1| alanine racemase [Ajellomyces dermatitidis SLH14081]
gi|239608462|gb|EEQ85449.1| alanine racemase [Ajellomyces dermatitidis ER-3]
gi|327356074|gb|EGE84931.1| alanine racemase [Ajellomyces dermatitidis ATCC 18188]
Length = 297
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/269 (26%), Positives = 102/269 (37%), Gaps = 49/269 (18%)
Query: 1 MSLGN-----KLQVFKQKIENSAILA-----KRPKDSVSLVAVSKMVDSKKIRVALSCGQ 50
MSL L +I ++ +RP+ V L+AVSK+ + +++
Sbjct: 19 MSLRATALITNLSAVTARIAAASAKVPQTQPQRPQRPVRLLAVSKIKPASDVQILHEHNP 78
Query: 51 V-IFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
F EN QE +K +V+ FIG LQSNK + + V T
Sbjct: 79 TLHFGENYFQELLEKSRALKALSPEVRWHFIGGLQSNKCVSLARDVPGLFAVESVDTEKK 138
Query: 109 LS--------------LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKY 153
+ L VY+QVNT E KSG+ P + R
Sbjct: 139 ANLLNRGWGERLAAAGDADADAENRLRVYVQVNTSGEANKSGVEPVEATRLCRHIRENCP 198
Query: 154 QLNVEGLMCI-------PPAMGNPKPHFYLLSEIARECKLTKL--------------SMG 192
+L + GLM I + N F L E + +L SMG
Sbjct: 199 RLKLVGLMTIGALARSQATTLENENEDFLCLRETRDRVE-KELGLAGEDGEGEGLELSMG 257
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPCQ 221
MT+D+E AI G+ VR+G+ IFG RP +
Sbjct: 258 MTQDYEGAIKMGSDQVRVGAEIFGPRPPK 286
>gi|188527840|ref|YP_001910527.1| hypothetical protein HPSH_05430 [Helicobacter pylori Shi470]
gi|188144080|gb|ACD48497.1| hypothetical protein HPSH_05430 [Helicobacter pylori Shi470]
Length = 222
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARTAYSRH-HIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE-KTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++SL + K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|108563422|ref|YP_627738.1| hypothetical protein HPAG1_0997 [Helicobacter pylori HPAG1]
gi|107837195|gb|ABF85064.1| hypothetical protein HPAG1_0997 [Helicobacter pylori HPAG1]
Length = 222
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDTLITKIEKARTAYSRH-HIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ +++ ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|229140549|ref|ZP_04269104.1| hypothetical protein bcere0013_36480 [Bacillus cereus BDRD-ST26]
gi|229198012|ref|ZP_04324726.1| hypothetical protein bcere0001_35470 [Bacillus cereus m1293]
gi|228585491|gb|EEK43595.1| hypothetical protein bcere0001_35470 [Bacillus cereus m1293]
gi|228643110|gb|EEK99386.1| hypothetical protein bcere0013_36480 [Bacillus cereus BDRD-ST26]
Length = 200
Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + + FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVN--WHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + + + + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + + +E +L +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKTLRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|225619384|ref|YP_002720610.1| hypothetical protein BHWA1_00441 [Brachyspira hyodysenteriae WA1]
gi|225214203|gb|ACN82937.1| hypothetical protein BHWA1_00441 [Brachyspira hyodysenteriae WA1]
Length = 231
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 101/230 (43%), Gaps = 15/230 (6%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAEN 56
M+ + + I + ++++AVSK I+ LS E+
Sbjct: 1 MNRNKILERYNEISNNINIAKQKYNIE-YDINIIAVSKYSSIDTIKEFLSLDIDLPLGES 59
Query: 57 KLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K Q + + + + + +V+ FIG +QSNKV IV D+I++V + A ++ E +K
Sbjct: 60 KAQSLRDRAGEIAQFKNNVKWHFIGRIQSNKVKYIVRYADLIQSVDSIEIAECINKEALK 119
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
++ + +Q N E QK G N D + ++++GLM I N
Sbjct: 120 NNKIQDILLQFNISDEDQKGGFNLNDYLDVYKNIIKMSNISIKGLMGIGKDSENSLLIEE 179
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ K L+ LSMGM+ D+ELAI G+ +RIGS G
Sbjct: 180 EFEKLNTIYKSINNQYNNPLSILSMGMSSDYELAIKHGSNMIRIGSSFLG 229
>gi|302528453|ref|ZP_07280795.1| pyridoxal-5'-phosphate dependent enzyme [Streptomyces sp. AA4]
gi|302437348|gb|EFL09164.1| pyridoxal-5'-phosphate dependent enzyme [Streptomyces sp. AA4]
Length = 278
Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R +D V L+ V+K + + G + AEN+ QEA
Sbjct: 44 LAASLAAVEERIARACAEAGRSRDEVRLLGVTKTFPAADAALLTDLGLLDLAENRDQEAG 103
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----- 114
K + + + +G LQ NK +V +++V + A L+ +
Sbjct: 104 PKAAEVAELRPDVAPRWHMVGRLQRNKARSVVRWAAEVQSVDSARLADALARAVAAAREA 163
Query: 115 -KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+++ L V +QV+ ++ + G ++ +L + G+M + P +P
Sbjct: 164 GERTGPLDVLVQVSLDGDVARGGTPLDEVGALADRIAHTGELRLRGVMAVAPLGEDPAAA 223
Query: 174 FYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS A R + +S GM+ D + AI G+T VR+G+ + G R
Sbjct: 224 FARLSHAAERVRDRHPEAADVSAGMSHDLDQAIRHGSTCVRVGTALLGGR 273
>gi|320592368|gb|EFX04807.1| alanine racemase family [Grosmannia clavigera kw1407]
Length = 287
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 94/266 (35%), Gaps = 52/266 (19%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +Q +++I +A A RP V LVAVSK+ + I + +
Sbjct: 20 LAANIQAVQERIAAAA--AGRP---VRLVAVSKLKPANDIVALHEGPAKQVHFGENYAQE 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----------------SREKT 105
+ + +Q FIG LQS + + ++ +
Sbjct: 75 LRDKAVLLPRSIQWHFIGGLQSGHCKGLARIPNLWCVSSIDSAKKAKLLEAARAAFVREQ 134
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCI 163
+L S + V++QVNT E KSG P + + L + GLM I
Sbjct: 135 QTLSSSSSSSVLPPIHVHVQVNTSGEESKSGCAPGDDTVALCRTIVDECPHLRLLGLMTI 194
Query: 164 PPA------------MGNPKPHFYLLSEIARECKLT----------------KLSMGMTR 195
G P F L E + +LSMGM+
Sbjct: 195 GAIARSRATDADAAAAGIENPDFVALREQRDLVQAALPMSTSTTDQPAAGPLELSMGMSD 254
Query: 196 DFELAIASGATSVRIGSGIFGERPCQ 221
DF AI SG+ VR+GS IFG RP +
Sbjct: 255 DFVGAITSGSGEVRVGSTIFGLRPPK 280
>gi|311741534|ref|ZP_07715358.1| YggS family pyridoxal phosphate enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303704|gb|EFQ79783.1| YggS family pyridoxal phosphate enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 232
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 22/231 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + +IE A + R L+ V+K + I + G AEN+ QEA+
Sbjct: 8 LEHNLSDTRAEIERLAAQSGRKP--PQLLPVTKFHPAADISLLADLGVTDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L + + IG +Q+ K + + + ++ K A L E ++
Sbjct: 66 AKAAELPQL---RFHMIGQIQTKKANHVARWAASVHSLDSLKLAHALERGVSLAKERGER 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV+IQV+ + + G+ P+ + V L + GLM +PP + F
Sbjct: 123 EGNLPVFIQVSVDGDGARGGVTPDVLDEVVRAVEDAQHLELAGLMVVPPLDADAGEVFRN 182
Query: 177 LS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ E+ R K S GM+ D AIA+G+ VR+G+ I G RP
Sbjct: 183 VRGEVDRLSSELNRPLKF---SAGMSADMAEAIAAGSDIVRVGTSIMGPRP 230
>gi|291301474|ref|YP_003512752.1| alanine racemase domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290570694|gb|ADD43659.1| alanine racemase domain protein [Stackebrandtia nassauensis DSM
44728]
Length = 249
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I + A R V LV VSK + + G F EN+ QEA
Sbjct: 17 LAENLRATRADIAAACEAAGRDPSGVELVVVSKTHPAADVCALAELGVRGFGENRDQEAA 76
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL- 120
K + +V+ F+G LQ NK +VS ++E+V R + L E Q
Sbjct: 77 AKAAEVAASGTEVRWHFVGRLQRNKCRSVVSYASMVESVDRSSLVTALDAEARSQRDSPL 136
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q++ + + G+ + L + G+M + P P F ++
Sbjct: 137 DVLMQLSVDSDTARGGVAEADDEALAAQILACQGLRLRGVMAVAPLGWEPGRAFEAVARR 196
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A + +S GM+ D+ AI+ GAT +R+GS + G R
Sbjct: 197 AAKIQALAPNANIVSAGMSADYAEAISFGATEIRLGSKLLGRRD 240
>gi|322710536|gb|EFZ02110.1| alanine racemase family protein (ISS) [Metarhizium anisopliae ARSEF
23]
Length = 256
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/244 (26%), Positives = 92/244 (37%), Gaps = 30/244 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L K++I A R V LVAVSK+ + I + +
Sbjct: 11 LISQLSSVKERIGGLAH--GRD---VRLVAVSKLKPANDILALHQAPASHRHFGENYTQE 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM--------I 114
+Q FIG LQS + + ++ S + L
Sbjct: 66 LTQKAQLLPKTIQWHFIGGLQSGHCKTLAKIPNLFCVSSVDTLKKAALLNTTRGALLASD 125
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCI-------PP 165
L V++QVNT E KSG P + L++ GLM I
Sbjct: 126 PSLPKLSVHVQVNTSGEEAKSGCAPGEETVALCREIITNCPNLHLLGLMTIGAIARSKAT 185
Query: 166 AMGNPKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
N F L + +AR+ L +LSMGM+ DFE A+ G+ VR+GS IFG
Sbjct: 186 TADNENDDFIALKQQRDLVARQLALDDARLELSMGMSEDFEGAVVLGSGEVRVGSTIFGT 245
Query: 218 RPCQ 221
RP +
Sbjct: 246 RPAK 249
>gi|74318436|ref|YP_316176.1| hypothetical protein Tbd_2418 [Thiobacillus denitrificans ATCC
25259]
gi|74057931|gb|AAZ98371.1| Protein of unknown function UPF0001 [Thiobacillus denitrificans
ATCC 25259]
Length = 246
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 71/205 (34%), Positives = 93/205 (45%), Gaps = 8/205 (3%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
SV L+AVSK + +R GQ F EN LQEA K L + FIG +Q
Sbjct: 42 DPASVELLAVSKAFGAAAVRALAGAGQRAFGENYLQEALVKQAALADLA-LDWHFIGPIQ 100
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK I F + +V R K A LS + L V I+VN E K G P+
Sbjct: 101 SNKTRPIAENFGWVHSVDRLKIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALP 160
Query: 144 DFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK----LTKLSMGMTRD 196
+ V + L + G+M IP + F L E+ + L +SMGM+ D
Sbjct: 161 ELVEAVARLPGLRLRGMMTIPAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSAD 220
Query: 197 FELAIASGATSVRIGSGIFGERPCQ 221
E AI GAT VR+G+ +FGER
Sbjct: 221 LEAAILEGATIVRVGTALFGERKYP 245
>gi|328957130|ref|YP_004374516.1| hypothetical protein CAR_c08060 [Carnobacterium sp. 17-4]
gi|328673454|gb|AEB29500.1| hypothetical protein CAR_c08060 [Carnobacterium sp. 17-4]
Length = 224
Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ Q ++K+ S R + SV ++AV+K V S++ + G AEN+ +
Sbjct: 3 SVKENCQEIERKLGLSLKKVNRERSSVQVIAVTKSVSSEQAIAVIEEGYTHLAENRPEGL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + +IG+LQ+ KV ++++ D + R A + + + +
Sbjct: 63 EAKLEELNDLQ-LVWHYIGNLQTRKVKKVINKIDYFHALDRLALAEEIEK---RAQKRIS 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
++QVN E+ KSG+ P++ +F+ + ++ V GLM + P + +
Sbjct: 119 CFVQVNVTGEVSKSGVSPDELDEFISNLSKYSKIKVVGLMTMAPLNAEETVVRTAFAHLR 178
Query: 181 ----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM++D+ +A GAT +RIG+ F
Sbjct: 179 GLQQTIQEKSFSHAPCTELSMGMSKDYTIAAEEGATFIRIGTSFF 223
>gi|315443927|ref|YP_004076806.1| pyridoxal phosphate enzyme, YggS family [Mycobacterium sp. Spyr1]
gi|315262230|gb|ADT98971.1| pyridoxal phosphate enzyme, YggS family [Mycobacterium sp. Spyr1]
Length = 279
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 20/221 (9%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL------RKEW 72
A R + L+ V+K + + G FAE++ QEA K + R++
Sbjct: 25 ESAGRDVAEIELLPVTKFFPASDVLALYRLGCDAFAESRDQEATAKIEDVARVVGSREDT 84
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQSRFLPVYIQV 126
++ +G +Q NK + +V K + L E +++ L V+ Q+
Sbjct: 85 PIRWHMVGRIQRNKARSVAEWAYAAHSVDSVKVVAALERSASTALEEGRRTEPLRVFAQL 144
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+ + + G+ + T+ LC + G+M IPP +P F L +
Sbjct: 145 SLDGDEARGGVDVDATERVDELCAAMDRAGGLTFAGMMAIPPLGADPGEAFARLRQERDR 204
Query: 184 CKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 205 VQRDYEQRLGLSAGMSGDLEAAVRHGSTCVRVGTALMGSRP 245
>gi|255322257|ref|ZP_05363403.1| pyridoxal phosphate enzyme, YggS family [Campylobacter showae
RM3277]
gi|255300630|gb|EET79901.1| pyridoxal phosphate enzyme, YggS family [Campylobacter showae
RM3277]
Length = 211
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 15/216 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL ++IEN+ R ++V L+AVSK V +K++ L GQ F EN++QE K
Sbjct: 2 KLAQILERIENA-----RTGEAVKLIAVSKNVTTKEVLELLEQGQTSFGENRVQEL-KNK 55
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ ++ FIG LQSNK++ +++L + ++ + LP +Q
Sbjct: 56 SEILSNLPIEWHFIGRLQSNKINHLLALKPALW--QSCESVEAALAVDKRLVCELPCLLQ 113
Query: 126 VNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N+ +E K GI P +D + ++ L G+M I + + K +I
Sbjct: 114 INSAHEDSKQGISPEAAQDAFLQIAQECKFLKPIGVMSIGAHVDDEKVVKKSFETTRKIY 173
Query: 182 RECK---LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ SMGM+ DFELAI G+ +R+GS +
Sbjct: 174 ENLQSKGAQICSMGMSGDFELAIKCGSNMIRLGSIL 209
>gi|158301843|ref|XP_321478.4| AGAP001621-PA [Anopheles gambiae str. PEST]
gi|157012667|gb|EAA00912.4| AGAP001621-PA [Anopheles gambiae str. PEST]
Length = 268
Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 27/244 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ ++ L+ L+AVSK I A S GQ F EN +QE
Sbjct: 23 IRQTLQKIEETYNKRLALSN--APKPLLIAVSKTKPVDLILNAYSVGQRDFGENYVQELV 80
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA---------SLLS 110
+K R D++ FIG LQSNK++++++L ++ + +
Sbjct: 81 EKANDARILEHCQDIRWHFIGHLQSNKINKVINLPNLHMIQTVHSIKLAEGLNKAWEKVK 140
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCI------ 163
E ++ + L V +Q+NT E +K+G+ P + LN EG+M I
Sbjct: 141 AENAEKKQQLNVLVQINTSGEDEKNGVQPEDAVGLFRYVLDKCPNLNCEGVMTIGRFGHD 200
Query: 164 ------PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P K + S R+ ++SMGM+ DF AI +G+T VR+GS IFG
Sbjct: 201 YTTGPNPDFGTLMKCQQDICSTFERDPAELQVSMGMSDDFVQAIEAGSTIVRVGSSIFGA 260
Query: 218 RPCQ 221
R +
Sbjct: 261 RAKK 264
>gi|324521624|gb|ADY47891.1| Proline synthase co-transcribed bacterial protein [Ascaris suum]
Length = 277
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 2 SLGNKLQVFKQKIENSAILA-------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA 54
++ L+V +++ + A R LVAVSK ++ GQ F
Sbjct: 37 TVATNLRVVLNRLKEVSEKAQGTSRWCGRIP---MLVAVSKTKHPDLVKRCYDEGQRKFG 93
Query: 55 ENKLQEAKKKWIPLRKEWDV-QLRFIGSLQSNKVSE--IVSLFDVIETVSREKTASLLSL 111
EN +QE ++K L + + FIG +QSNK+++ + +ET+S EK ++L
Sbjct: 94 ENYVQELQEKAAALANDCPHIEWHFIGQIQSNKIAKLAAIQNLHCVETLSSEKHCTMLDK 153
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMG-- 168
EM K+ R + VY+Q NT E QK G P + R Q L G M I
Sbjct: 154 EMAKRGRRINVYVQTNTSNEPQKGGATPESALNVAQFIREQCPSLRFAGFMTIGSFEQSS 213
Query: 169 --NPKPHFYLLSEIAREC----KLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F +L ++ ++ +++ LSMGM+ DFE A+ G+TSVR+G+ IFG R
Sbjct: 214 SQQPNADFDVLFDVRKKFCERTGVSEGDYDLSMGMSHDFETAVLQGSTSVRVGTTIFGSR 273
>gi|317182312|dbj|BAJ60096.1| hypothetical protein HPF57_1022 [Helicobacter pylori F57]
Length = 222
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKDASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + L ++GLMCI + K
Sbjct: 123 LLQVNSAYEKSKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|187251199|ref|YP_001875681.1| alanine racemase domain-containing protein [Elusimicrobium minutum
Pei191]
gi|186971359|gb|ACC98344.1| Alanine racemase domain protein [Elusimicrobium minutum Pei191]
Length = 229
Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM-VDSKKIRVALSCGQVIFAENKLQE 60
++ K +I NSA + R + + V K D + + G AE+KLQ+
Sbjct: 6 NVIEKYNKVITRIRNSAEVRNRNFKRIKPILVIKYAKDLDVLELLGFLGAASAAESKLQD 65
Query: 61 AKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A+K+W L FIG+LQ NK+++IV+LFD I++V + A ++ + +Q
Sbjct: 66 AQKRWNKDEFKALRNKTALHFIGALQKNKIAKIVNLFDYIDSVDTIEHAEFINAKAKEQG 125
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ + +Q+ +SG P V + +N++G M I P + N + +L
Sbjct: 126 KKVNCLLQIKLTKSATQSGANPQDVHTLVEHIKTLEHINLKGFMAIAPQVENIEDLRHLF 185
Query: 178 SEIA----RECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFG 216
EI +E +LS+GM+ DFE A+ G+T RIGS IFG
Sbjct: 186 KEIKILNDKELGPEAELSLGMSNDFETAVEEGSTMPRIGSAIFG 229
>gi|226355701|ref|YP_002785441.1| hypothetical protein Deide_08190 [Deinococcus deserti VCD115]
gi|226317691|gb|ACO45687.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 209
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 13/218 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQ 59
MSL L +Q + + R S LVAV+K D I R L G E + Q
Sbjct: 1 MSLPEVLAAIRQ----AEAASGREPGSARLVAVTKGQDFLSIERSVLKYGAFPLGEGRAQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K D++ F+G LQ NKV + ++ ++ A ++ R
Sbjct: 57 ELRDKAAARP---DLEWHFLGPLQRNKVKYLRP-VTLVHSLEEIWQAEAIAQAAQSWGRA 112
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLL 177
V IQV+ G E+QK G+ P + F R+ L V GLM + P + F
Sbjct: 113 PDVLIQVHNG-EVQKHGVDPEKLPGFYSSVRETG-LTVRGLMVMAPEADEAQVRRVFEDT 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ A + L++LSMGM+ D+ LA+ +G+T VR+G +F
Sbjct: 171 ARRAHDLGLSELSMGMSGDYPLAVQAGSTLVRVGRSLF 208
>gi|302927051|ref|XP_003054417.1| hypothetical protein NECHADRAFT_75105 [Nectria haematococca mpVI
77-13-4]
gi|256735358|gb|EEU48704.1| hypothetical protein NECHADRAFT_75105 [Nectria haematococca mpVI
77-13-4]
Length = 259
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 97/241 (40%), Gaps = 28/241 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L K ++ +A+ R V LVAVSK+ + I + +
Sbjct: 18 LVSQLNSVKDRL--TAVANGRN---VRLVAVSKLKPANDILALHKAPTSQTHFGENYAQE 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP- 121
VQ FIG +++I +LF V + +K L + +
Sbjct: 73 LTQKAALLPNTVQWHFIGG-HCKSLAKIPNLFCVSSVDTSKKAQLLNTTRGNLLASQPDL 131
Query: 122 ----VYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
V++QVNT E KSG P + + L + GLM I +
Sbjct: 132 SKLGVHVQVNTSGEEAKSGCAPGADTVALCREIVDTCPNLQLLGLMTIGAIARSKATTAE 191
Query: 176 LLSE-----------IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+E +A+E L++ LSMGM+ DFE A+ G+ VR+GS IFG+RP
Sbjct: 192 NENEDFLTLKAQRDLVAKELGLSEESLELSMGMSEDFEGAVRLGSNEVRVGSTIFGQRPA 251
Query: 221 Q 221
+
Sbjct: 252 K 252
>gi|300741270|ref|ZP_07071291.1| pyridoxal phosphate enzyme, YggS family [Rothia dentocariosa M567]
gi|300380455|gb|EFJ77017.1| pyridoxal phosphate enzyme, YggS family [Rothia dentocariosa M567]
Length = 273
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 37/256 (14%)
Query: 3 LGNKLQVFKQKIENSAILAK--RPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++ ++ R + S V LV V+K + + + G IF EN+
Sbjct: 18 LADNYARVMARVRDAEADTSGVRTEHSPTVRLVTVTKFFPASDVAALYTQGVRIFGENRD 77
Query: 59 QEAKKKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
QEA K + FIG LQ+NK +V +++V R L+
Sbjct: 78 QEAAPKARALRAIEKPADPAYWTFIGQLQTNKAKSVVKYAHQVQSVDRSSLIDSLAKAYR 137
Query: 115 KQSRFLPV------------------------YIQVNTGYEIQKSGIMPNQTKDFVILCR 150
Q E + G ++ +
Sbjct: 138 NQVARYETGEQDAPAALSQGALECLIQVSLEAQATAGHASEGARGGTDQDEILELAERIE 197
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGA 205
+ +L G+M + P NP F L E+A+ + ++S GM+ D E AI G+
Sbjct: 198 AQEELRCGGIMAVAPLGANPDESFEKLWELAQGLRAEFPHADQISAGMSADLEAAIRWGS 257
Query: 206 TSVRIGSGIFGERPCQ 221
T VR+GS I G+R
Sbjct: 258 TCVRVGSDIMGKRDYP 273
>gi|254456661|ref|ZP_05070090.1| conserved hypothetical protein TIGR00044 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083663|gb|EDZ61089.1| conserved hypothetical protein TIGR00044 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 182
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+I + G + F ENK+QEA KW + + ++L IG LQ+NKV +V LFD I
Sbjct: 2 SEINPLIENGHLHFGENKVQEAVDKWSDIKKLKKSLKLHMIGKLQTNKVKYVVPLFDYIH 61
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ K A ++ E IK+++ L ++IQVN G E QKSGI + K+F C ++ LN+
Sbjct: 62 SLDNIKLAEKIASEQIKKNKNLKIFIQVNIGNESQKSGINITELKNFYEKCTRELNLNII 121
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
GLMC+PP G+ K +F + E+ + + LSMGM+ D+ A+ GAT +RIGS IFG+R
Sbjct: 122 GLMCLPPQHGSVKNYFNEMVELKKILNVEDLSMGMSEDYLEAVGCGATYIRIGSKIFGDR 181
>gi|311113345|ref|YP_003984567.1| YggS family pyridoxal phosphate enzyme [Rothia dentocariosa ATCC
17931]
gi|310944839|gb|ADP41133.1| YggS family pyridoxal phosphate enzyme [Rothia dentocariosa ATCC
17931]
Length = 273
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/256 (22%), Positives = 92/256 (35%), Gaps = 37/256 (14%)
Query: 3 LGNKLQVFKQKIENSAILAK--RPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++ ++ R + S V LV V+K + + + G IF EN+
Sbjct: 18 LADNYARVMARVRDAEADTSGVRTEHSPTVRLVTVTKFFPASDVAALYTQGVRIFGENRD 77
Query: 59 QEAKKKWIP----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
QEA K + FIG LQ+NK +V +++V R L+
Sbjct: 78 QEAAPKARALRAIEKPADPAYWTFIGQLQTNKAKSVVKYAHQVQSVDRSSLIDSLAKAYR 137
Query: 115 KQSRFLPV------------------------YIQVNTGYEIQKSGIMPNQTKDFVILCR 150
Q E + G ++ +
Sbjct: 138 NQVARYEAGEQDAPAALSQGALECLIQVSLEAQATAGHASEGARGGTDQDEILELAERIE 197
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGA 205
+ +L G+M + P NP F L E+A+ + ++S GM+ D E AI G+
Sbjct: 198 AQEELRCGGIMAVAPLGANPDESFEKLWELAQGLRAEFPHADQISAGMSADLEAAIRWGS 257
Query: 206 TSVRIGSGIFGERPCQ 221
T VR+GS I G+R
Sbjct: 258 TCVRVGSDIMGKRDYP 273
>gi|157136630|ref|XP_001663798.1| proline synthetase associated protein [Aedes aegypti]
gi|108880984|gb|EAT45209.1| proline synthetase associated protein [Aedes aegypti]
Length = 258
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 10 FKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+Q + + ++ LVAVSK + I S GQ F EN +QE +K
Sbjct: 15 IRQTLAKIDEAFGKRSQTIKAPKPLLVAVSKTKPIELILDGYSIGQRDFGENYVQELIEK 74
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS--------LLSLEM 113
R D++ FIG LQ+NK+++IV+L ++ + +
Sbjct: 75 ANDPRILEHCKDIRWHFIGHLQTNKINKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKVE 134
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCI--------- 163
+ + L V IQ+NT E +K+G P + + + L G+M I
Sbjct: 135 KPEKQQLNVLIQINTSGEDEKNGTQPAEAVNLYRFVTEKCPNLKCHGVMTIGRFGHDYST 194
Query: 164 ---PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P + K H + S R+ ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 195 GPNPDFIELMKCHQDICSTFERDPAELQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAK 254
Query: 221 Q 221
+
Sbjct: 255 K 255
>gi|319760385|ref|YP_004124323.1| pyridoxal phosphate enzyme [Candidatus Blochmannia vafer str. BVAF]
gi|318039099|gb|ADV33649.1| pyridoxal phosphate enzyme [Candidatus Blochmannia vafer str. BVAF]
Length = 237
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 97/224 (43%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
+ +L +I +A R ++ L+AV+K I+ ++ GQ F EN +QE
Sbjct: 4 IQKQLNHIHNQIHIAAHNVNRNPQNIQLIAVTKNQSINTIKKSIFYGQRNFGENYVQEAL 63
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K W + FIGS+QSNK+ I FD T+S EK+ L+ K+ L
Sbjct: 64 KKICWFRTHIPDKISWHFIGSIQSNKIRIIAENFDWCHTISNEKSIYHLNKHRPKKLSQL 123
Query: 121 PVYIQVNTGYEIQKSG-IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
IQ+N KSG I Q Q +L + G+M + K +
Sbjct: 124 NTLIQINISGNHNKSGIITIEQMLKLATTIYQCSKLKLRGIMSMSIPKSEFKQQMIQFKK 183
Query: 180 I---ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + + LS+GM+ D AI SG+ +RIG+ IF
Sbjct: 184 VYTFFKRLQNICPHVDTLSLGMSNDILPAIYSGSNLLRIGTSIF 227
>gi|170065074|ref|XP_001867791.1| proline synthetase co-transcribed protein-like protein [Culex
quinquefasciatus]
gi|167882213|gb|EDS45596.1| proline synthetase co-transcribed protein-like protein [Culex
quinquefasciatus]
Length = 337
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 26/242 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVS--LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++ KI+ + + LVAVSK I S GQ F EN +QE +K
Sbjct: 94 IRQALAKIDEAFAKRSETIKAPKPLLVAVSKTKPVDLILDGYSIGQRDFGENYVQELIEK 153
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE--------M 113
+ D+Q FIG LQSNK+++IV+L ++ + +L
Sbjct: 154 AHDAKILEHCKDIQWHFIGHLQSNKINKIVNLPNLYMIETVHNAKLAENLNKAWEKVKAD 213
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCI--------- 163
S L V IQ+NT E +K+G P + + + LN G+M I
Sbjct: 214 KPDSSKLNVLIQINTSGEDEKNGTNPAEAVNLYRFVTEKCPNLNCHGVMTIGRFGHDYST 273
Query: 164 ---PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P + K H + S ++ + ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 274 GPNPDFIELMKCHADICSTFEKDPEEVQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAK 333
Query: 221 QT 222
+T
Sbjct: 334 KT 335
>gi|315604725|ref|ZP_07879788.1| alanine racemase domain protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313737|gb|EFU61791.1| alanine racemase domain protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 233
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 22/235 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSL-VAVSKMVDSKKIRVAL----SCG-QVIFA 54
MS+ + + + +I+++ R DSV+L +AV K ++ R A G ++
Sbjct: 1 MSIPDAIAAARDRIDHATSACGRT-DSVTLELAV-KTRTPEECRAAATALRDAGLPILLG 58
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA+ +R+ ++ IG LQSNK++ +S D IE++ A+ +
Sbjct: 59 HNRVQEARSTVDAIREVPGARVHLIGPLQSNKINHALSCVDAIESLDSPALAAKIDA--- 115
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPK 171
+ S LPV+++VN E K G P+ + L + G M + P + +
Sbjct: 116 RASVRLPVFVEVNVSGEATKHGCAPSDVAALINAVEASAHLQLAGFMTVGLNSPVEADVR 175
Query: 172 PHFYLLS----EIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E ARE +LSMGM+RD E AIA GAT VR+G+ +FGER
Sbjct: 176 AAYARLRTIRGEAARELGVGEEALELSMGMSRDLEWAIAEGATIVRLGTAVFGER 230
>gi|217032271|ref|ZP_03437768.1| hypothetical protein HPB128_142g19 [Helicobacter pylori B128]
gi|298735942|ref|YP_003728467.1| hypothetical protein HPB8_446 [Helicobacter pylori B8]
gi|216946037|gb|EEC24650.1| hypothetical protein HPB128_142g19 [Helicobacter pylori B128]
gi|298355131|emb|CBI66003.1| conserved hypothetical protein [Helicobacter pylori B8]
Length = 222
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARTAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S ++ ++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP +T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSCDFELAIACGANLLRIGSFLF 220
>gi|255715669|ref|XP_002554116.1| KLTH0E14652p [Lachancea thermotolerans]
gi|238935498|emb|CAR23679.1| KLTH0E14652p [Lachancea thermotolerans]
Length = 255
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 28/243 (11%)
Query: 1 MS-LGNK-----LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS L + K +++ R VSL+ VSK+ + I++ G F
Sbjct: 10 MSELRKNELLSSYEAVKATVDSYVKGCGRN--DVSLLPVSKLKPASDIQLLYDHGLRSFG 67
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-----ETVSREKTASLL 109
EN +QE K D++ FIG LQ+NK ++ + ++ +++ + K +
Sbjct: 68 ENYVQELISKAE--ILPKDIRWHFIGGLQTNKCKDLAKVENLYAVETIDSLKKAKKLNEA 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE---GLMCIPPA 166
++ Q+ + +Q+NT E QKSG+ + V+ + GLM I
Sbjct: 126 RAKLHPQANKILCNVQINTSEEAQKSGLSDEKEIFEVVQFMLSDEATNIELGGLMTIGSW 185
Query: 167 M-----GNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
F +L + ++ KLSMGM+ DF+ AI G + VRIG+ IFG
Sbjct: 186 DVSHSETEENHDFAVLCQWKKKIDDKFSTDLKLSMGMSSDFKQAINQGTSQVRIGTDIFG 245
Query: 217 ERP 219
RP
Sbjct: 246 TRP 248
>gi|299749232|ref|XP_001838603.2| proline synthetase associated protein [Coprinopsis cinerea
okayama7#130]
gi|298408344|gb|EAU83204.2| proline synthetase associated protein [Coprinopsis cinerea
okayama7#130]
Length = 268
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 49/260 (18%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L ++++ + S +LVAVSK + I G + F EN +QE +
Sbjct: 14 IKDCLGAIRERVATA------SSSSPTLVAVSKYKPAGDILACHELGHLDFGENYVQELE 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM---IKQSRF 119
+ D++ FIG+LQSNK + + ++ + + +L ++
Sbjct: 68 E--KAKILPSDIRWHFIGTLQSNKAKTLALIPNLYSIQTLGSVKAANALNKALSSDRTTP 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT----------KDFVILCRQKYQLNVEGLMCI------ 163
L V +QVNT E KSG+ P + K + R+ L +EGLM I
Sbjct: 126 LRVLLQVNTSGEDAKSGLPPLSSSEDVSASELGKLAAHVIRECPALRLEGLMTIGSLELS 185
Query: 164 -PPAMGNPKPHFYLLSEIARECK--LTK-------------------LSMGMTRDFELAI 201
+ F L + K L LSMGM+ DFE A+
Sbjct: 186 IHASETEKNADFERLKQTRDILKAYLETTFGEDGTKQWGQEGTGKLLLSMGMSSDFETAL 245
Query: 202 ASGATSVRIGSGIFGERPCQ 221
+G+ +R+GS IFG RP +
Sbjct: 246 KAGSDIIRVGSSIFGGRPPK 265
>gi|195341465|ref|XP_002037330.1| GM12173 [Drosophila sechellia]
gi|194131446|gb|EDW53489.1| GM12173 [Drosophila sechellia]
Length = 254
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 71/244 (29%), Positives = 105/244 (43%), Gaps = 30/244 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ + V LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDEVLVQ---RPKEVQAARPLLVAVSKTKPAEAVIEAYEDGQRDFGEN 66
Query: 57 KLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS--- 110
+QE ++K K D++ FIG +QSNK+++I+S+ ++ + +
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDA 126
Query: 111 ---LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA 166
L V IQ+NT E KSGI + LN+ G+M I
Sbjct: 127 AWSKRQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAF 186
Query: 167 ----MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGI 214
P P F L ++ R C+ L SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYASGPNPDFVSLMQVHRTICEAHSLAPDSVLVSMGMSHDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGER 218
FG R
Sbjct: 247 FGHR 250
>gi|170090438|ref|XP_001876441.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647934|gb|EDR12177.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 270
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/260 (25%), Positives = 110/260 (42%), Gaps = 44/260 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +++ ++ + P + +LVAVSK+ + I GQ+ F EN +QE +
Sbjct: 14 LVESLAEIRARVQAASSSS--PGHTPTLVAVSKIKPASDILACYEAGQLDFGENYVQELE 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---MIKQSRF 119
+ D++ FIG+LQSNK + S+ ++ + T + +L +
Sbjct: 72 E--KARVLPADIRWHFIGTLQSNKAKTLASIPNLHAVQTLNSTKAASALNKALPSDRPYP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC----------RQKYQLNVEGLMCIPPAMGN 169
L V+IQVNT E KSG+ + + + +L +EGLM I +
Sbjct: 130 LRVFIQVNTSGETSKSGLDTLSSASDLDSSELAQLARYVLTECPKLRLEGLMTIGALELS 189
Query: 170 PKPHFYLLSEIARECKLT---------------------------KLSMGMTRDFELAIA 202
+ K T LSMGM+ DFE A+
Sbjct: 190 LSASEVEKNADFERLKETRDVLDGYLGGLSGDGEKSWGRQGWGGLTLSMGMSSDFEAALK 249
Query: 203 SGATSVRIGSGIFGERPCQT 222
+G+ VR+G+GIFG+R ++
Sbjct: 250 AGSDIVRVGTGIFGQRVKKS 269
>gi|50955145|ref|YP_062433.1| hypothetical protein Lxx15220 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951627|gb|AAT89328.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 214
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++ + ++A A R D ++ + V+K + +R S G EN+ QEA++K +
Sbjct: 2 REGVADAARAAGRSPDELTTIVVTKFHPASLVRELASLGVRDVGENRHQEAQEKVS-VLA 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ ++ F+G LQS K + V+ ++ R L + L ++Q+N
Sbjct: 61 DLELTWHFVGQLQSKKARQARRYAGVVHSIDRLSLVDALRNDD---GTVLGAFVQLNLTD 117
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL--TK 188
+ + G+ + V L + G+M + P P F + + + +
Sbjct: 118 DPARGGVAGRDLEPLVDHILAAPGLRLLGVMAVAPLDEEPARAFERVRVASERVRALAPE 177
Query: 189 ---LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM++D+ AIA+GAT +RIG+ I G RP
Sbjct: 178 AVAISAGMSQDYREAIAAGATHLRIGTAITGNRP 211
>gi|300780837|ref|ZP_07090691.1| YggS family pyridoxal phosphate enzyme [Corynebacterium genitalium
ATCC 33030]
gi|300532544|gb|EFK53605.1| YggS family pyridoxal phosphate enzyme [Corynebacterium genitalium
ATCC 33030]
Length = 235
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 19/235 (8%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
M+ L L+ ++ + + A R SV+++ V+K + + + G EN
Sbjct: 2 MTRKDELAANLEGLRKDVRAAERSAGREDGSVAILPVTKFHPASDVALLAELGIATVGEN 61
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------ 110
+ QEAK+K +++ IG +Q+ K + + + ++ K A L
Sbjct: 62 REQEAKQKAAE---LPNMRFAMIGQIQTKKANSVARWASEVHSLDSVKLARALDSGVALA 118
Query: 111 -LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ S LP IQ++ + + G+ + + V Q + V+G M +PP +
Sbjct: 119 LERGDRTSDQLPCLIQLSFDEDENRGGVRESDLAELVAEAEQLEHVLVDGFMVVPPIDAD 178
Query: 170 PKPHFYLLSEIAREC--KLTK---LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F IA + +L + LS GM+ DFE AI G+ VR+G+ + G+RP
Sbjct: 179 PARVFEASRSIADDYAGRLGRPMLLSAGMSHDFEQAITCGSDIVRVGTRLLGQRP 233
>gi|68535830|ref|YP_250535.1| hypothetical protein jk0755 [Corynebacterium jeikeium K411]
gi|68263429|emb|CAI36917.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length = 251
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 92/228 (40%), Gaps = 20/228 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + L+ ++K + +++ G EN+ QEA+
Sbjct: 31 IAENLARVRRRIAVA--------GGADLLPITKFHPVEDVKLLAQLGVTAVGENREQEAR 82
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K + +Q +G +Q+ K + + + T+ K + L E +
Sbjct: 83 DKHAQ-LADTGLQFHMVGQVQTKKANSVARWAAAVHTLDSLKLLNALDRGAALALERGDR 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ LPV +Q + + Q+ G + + L + GLM +PP +P F
Sbjct: 142 NDRLPVLLQFSADGDPQRGGAVEADIDELADAVAAAENLELRGLMTVPPLDADPAAVFAR 201
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ S GM+ D E+AIA G+T VR+G+ I G RP
Sbjct: 202 GRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRVGTDIMGARP 249
>gi|296117543|ref|ZP_06836127.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
ammoniagenes DSM 20306]
gi|295969274|gb|EFG82515.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
ammoniagenes DSM 20306]
Length = 238
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 103/223 (46%), Gaps = 10/223 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q IE + A R L+ V+K ++ I + G AEN+ QEA+
Sbjct: 18 LAAGLKETRQLIEKLSHEAGRD-TVPELLPVTKFHPAEDIALLAELGITDVAENREQEAR 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL-P 121
K DV IG +Q+ K + + + +V EK A L+ + R + P
Sbjct: 77 AKAEE---LSDVHFHMIGQVQTKKANHVARWAHSVHSVDTEKLAVALNRGVENAGRDVLP 133
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V+IQV+ + + G+ + + + L++ GLM +PP + K F + E+A
Sbjct: 134 VFIQVSFDGDTARGGVPLDGVAELAQIIEDLPNLDLRGLMVVPPLDTDAKEVFTTVRELA 193
Query: 182 RECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ KLS GM+ D AIASG VR+G+GI G RP
Sbjct: 194 NKLGEQLERTMKLSAGMSADLADAIASGTDIVRVGTGIMGARP 236
>gi|260578081|ref|ZP_05846003.1| alanine racemase, N- domain protein [Corynebacterium jeikeium ATCC
43734]
gi|258603821|gb|EEW17076.1| alanine racemase, N- domain protein [Corynebacterium jeikeium ATCC
43734]
Length = 251
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 93/228 (40%), Gaps = 20/228 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L +++I + L+ ++K ++ +++ G EN+ QEA+
Sbjct: 31 IADNLARVRRRIAVA--------GGADLLPITKFHPAEDVKLLAQLGVTAVGENREQEAR 82
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K + ++ +G +Q+ K + + + TV K + L E +
Sbjct: 83 DKHAQ-LADAGLRFHMVGQVQTKKANSVARWAAAVHTVDSLKLLNALDRGAALALERGDR 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV +Q + + Q+ G + + L + GLM +PP +P F
Sbjct: 142 HERLPVLLQFSADGDPQRGGAVEADIDELADAVAAAENLELRGLMTVPPLDADPAVVFAR 201
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ S GM+ D E+AIA G+T VR+G+ I G RP
Sbjct: 202 GRKLVERIADRAIGAPVYSAGMSGDLEIAIAEGSTLVRVGTDIMGARP 249
>gi|94469206|gb|ABF18452.1| proline synthetase co-transcribed protein-like protein [Aedes
aegypti]
Length = 258
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 10 FKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+Q + + ++ LVAVSK + I S GQ F EN +QE +K
Sbjct: 15 IRQTLAKIDDAFGKRSQTIKAPKPLLVAVSKTKPIELILDGYSIGQRDFGENYVQELIEK 74
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS--------LLSLEM 113
R D++ FIG LQ+NK+++IV+L ++ + +
Sbjct: 75 ANDPRILEHCKDIRWHFIGHLQTNKINKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKAE 134
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCI--------- 163
+ + L V IQ+NT E +K+G P + + + L G+M I
Sbjct: 135 KPEKQHLNVLIQINTSGEDEKNGTQPAEAVNLYRFVTEKCPNLKCHGVMTIGRFGHDYST 194
Query: 164 ---PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P + K H + S R+ ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 195 GPNPDFIELMKCHQDICSTFERDPAELQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAK 254
Query: 221 Q 221
+
Sbjct: 255 K 255
>gi|307721258|ref|YP_003892398.1| alanine racemase domain-containing protein [Sulfurimonas
autotrophica DSM 16294]
gi|306979351|gb|ADN09386.1| alanine racemase domain protein [Sulfurimonas autotrophica DSM
16294]
Length = 224
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 8/215 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +++E + + V +VAVSK ++ I+ + GQ F ENK+Q+ K K
Sbjct: 10 IDNVIRRVETARLKVS-DHLIVKIVAVSKYSTAEDIKRLYNIGQRAFGENKVQDLKAKAK 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L ++ FIG+LQ NK++ ++ + + + + A L ++ ++ L +Q
Sbjct: 69 ELEDL-PLEWHFIGNLQKNKINNLLDINPSLFQALDSLELAEELQKKLKAKNMTLECLMQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N+ E K G MP T + +N++G+M I + + I
Sbjct: 128 INSAKEESKHGFMPEDTISAYTQIISECPNINLKGVMSIGAHSDDKQVVKKSFETTHAIY 187
Query: 182 REC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ T SMGM+ DFELAI G+ VR+GS +F
Sbjct: 188 KQLPNATICSMGMSGDFELAIECGSNMVRLGSIMF 222
>gi|170072194|ref|XP_001870118.1| proline synthetase associated protein [Culex quinquefasciatus]
gi|167868284|gb|EDS31667.1| proline synthetase associated protein [Culex quinquefasciatus]
Length = 253
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 24/217 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNK 86
LVAVSK I S GQ F EN +QE +K + D+Q FIG LQSNK
Sbjct: 35 LVAVSKTKPVDLILDGYSIGQRDFGENYVQELIEKAHDAKILEHCKDIQWHFIGHLQSNK 94
Query: 87 VSEIVSLFDVIETVSREKTASLLSLE--------MIKQSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L ++ + +L S L V IQ+NT E +K+G
Sbjct: 95 INKIVNLPNLYMIETVHNAKLAENLNKAWEKVKADKPDSSKLNVLIQINTSGEDEKNGTN 154
Query: 139 PNQTKDFVIL-CRQKYQLNVEGLMCI------------PPAMGNPKPHFYLLSEIARECK 185
P + + + LN G+M I P + K H + S ++ +
Sbjct: 155 PAEAVNLYRFVTEKCPNLNCHGVMTIGRFGHDYSTGPNPDFIELMKCHADICSTFEKDPE 214
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++SMGM+ DF AI G+T VR+GS IFG R +T
Sbjct: 215 EVQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAKKT 251
>gi|256372019|ref|YP_003109843.1| alanine racemase domain protein [Acidimicrobium ferrooxidans DSM
10331]
gi|256008603|gb|ACU54170.1| alanine racemase domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 230
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 12/223 (5%)
Query: 1 MSLGNKLQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+L +L+ ++ IE + + RP +V V+K + +R A+ G EN
Sbjct: 1 MNLVEQLRERRRAIEAEVATLAPVRPP---RIVCVTKTHPVETVRAAVEAGNRELGENYA 57
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E +K LR DV+ FIG LQ ++ ++ V+ET+SR A L+
Sbjct: 58 SELAEKAAALRDL-DVRWHFIGHLQRRQIKQVSGAASVVETLSRVVEAERLAALGFDGE- 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM--CIPPAMGNPKPHFYL 176
V++QV +P + ++ + L V G+M +P + F
Sbjct: 116 ---VFVQVAPPDAPATRSGVPREGAPELVAAARSLGLRVVGVMGVALPGEEAPVRTFFRS 172
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +A E +L + S GM+ D+ A GAT +R+G+ + G RP
Sbjct: 173 LVALADELELPERSFGMSADWRWATTEGATILRLGTALLGPRP 215
>gi|300784861|ref|YP_003765152.1| pyridoxal-5'-phosphate dependent enzyme class III [Amycolatopsis
mediterranei U32]
gi|299794375|gb|ADJ44750.1| pyridoxal-5'-phosphate dependent enzyme class III [Amycolatopsis
mediterranei U32]
Length = 237
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R +D V L+A++K + + + G EN+ QEA
Sbjct: 8 LAENLAEVEERIAAACRAAGRARDEVKLIAITKTFPASDVALLAELGVTDVGENRDQEAG 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
K + ++ +G LQ NK +V +++V + A L+ + +
Sbjct: 68 PKAAEVAAR--LRWHMVGRLQRNKARSVVGWAHEVQSVDSARLADALAKAVHTERYSGKR 125
Query: 119 --FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ + + + G + Q +L + GLM + P +P F
Sbjct: 126 EEPLDVLIQASLDDDPGRGGCPLAELPALADHIAQSGELRLRGLMAVAPLGADPAAAFER 185
Query: 177 LSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + +S GM+ D E AI G+TSVR+G+ + G R
Sbjct: 186 LARAGESLRKDHPNAADVSAGMSHDLEQAITHGSTSVRVGTALLGGR 232
>gi|240168212|ref|ZP_04746871.1| hypothetical protein MkanA1_02797 [Mycobacterium kansasii ATCC
12478]
Length = 258
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAVRSRLAAAAEAAGRNVGEIELLPITKFFPATDVVILCRLGCRAVGESREQEAS 74
Query: 63 KKW---------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K P + +G +Q NKV + +V + + L
Sbjct: 75 AKAAEVARLLAAPPRAGLGGIHWHMVGRIQRNKVRSLARWAHTAHSVDSPRLVTALDRAV 134
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ R L VY+QV+ ++ + G+ P + L + GLM IP
Sbjct: 135 TAALAERRRDRPLRVYVQVSLDGDVSRGGVDITAPGAVDEICAQVDAAPGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L LS GM+ DFE A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRESFPGAVGLSAGMSADFETAVKHGSTCVRVGTALLGPR 253
>gi|320528155|ref|ZP_08029320.1| pyridoxal phosphate enzyme, YggS family [Solobacterium moorei
F0204]
gi|320131503|gb|EFW24068.1| pyridoxal phosphate enzyme, YggS family [Solobacterium moorei
F0204]
Length = 218
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
KI+ +A+ + L VSK ++I+ G+ IFAEN+ E +
Sbjct: 8 KIKQAAL-------DIDLCVVSKHHSIEEIQSYYDAGERIFAENRATELI--FKAGTLPK 58
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-TGYE 131
D+ +IG LQ NKV EI+ + I+++ A ++ E K +R + V I+++ +
Sbjct: 59 DIAWHYIGHLQRNKVKEILPIVSCIQSLDNIALAKVIEKEATKLNRTVNVLIELHLADED 118
Query: 132 IQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECK-- 185
KSG+ P F ++ ++++GLM + P + + ++ I + +
Sbjct: 119 TNKSGLDPADVDMFTNFLLQECPHISIQGLMTMGPHTEDTARIHEVFAKAQDIFKHLQET 178
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGM+ D+ +AI G+T +RIG+ +F
Sbjct: 179 FGKQYFHTLSMGMSHDYPIAIEHGSTMLRIGTYLF 213
>gi|257459425|ref|ZP_05624534.1| pyridoxal phosphate enzyme, YggS family [Campylobacter gracilis
RM3268]
gi|257442850|gb|EEV17984.1| pyridoxal phosphate enzyme, YggS family [Campylobacter gracilis
RM3268]
Length = 212
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 14/216 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L ++IE + A V LVAVSK V + ++R S GQ+ F EN++QE K+K
Sbjct: 2 RLDEILKRIEAAKAGAG----EVQLVAVSKNVGTDEVRELYSQGQIAFGENRVQELKRK- 56
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L +E ++ FIG+LQSNK++++++L + + L + + L ++
Sbjct: 57 SELLRELPLKWHFIGTLQSNKINQLIALRPTLW--QSCNSCELALAVNKRLNYPLDTLLE 114
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N E K+G+ N+ ++F+ + ++ LN+ G+M I + P EI
Sbjct: 115 INAAGESSKTGLDKNRAVEEFLRIKQECKNLNLIGVMSIGAHVSEPAQIARSFEATREIF 174
Query: 182 REC---KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
SMGM+ DFELAI G+ +R+G +
Sbjct: 175 DALVPHGARICSMGMSDDFELAIKCGSNMIRLGRIL 210
>gi|195575019|ref|XP_002105480.1| GD17245 [Drosophila simulans]
gi|194201407|gb|EDX14983.1| GD17245 [Drosophila simulans]
Length = 270
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 108/248 (43%), Gaps = 32/248 (12%)
Query: 2 SLGNKLQVFKQKIEN------SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
+ LQ ++I+ I A RP LVAVSK ++ + A GQ F E
Sbjct: 10 DVKAGLQHVLKRIDEVLLQRPKVIQAARPL----LVAVSKTKPAEAVIEAYEDGQRDFGE 65
Query: 56 NKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS-- 110
N +QE ++K K D++ FIG +QSNK+++I+S+ ++ + +
Sbjct: 66 NYVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLD 125
Query: 111 ----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPP 165
L V IQ+NT E KSGI + LN+ G+M I
Sbjct: 126 AAWSKRQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGA 185
Query: 166 A----MGNPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSG 213
P P F L ++ R C+ L SMGM+ DF+ AI G+T VR+GS
Sbjct: 186 FGFDYASGPNPDFVSLMQVHRSICEAYSLAPDSVLVSMGMSHDFDKAIEMGSTVVRVGSS 245
Query: 214 IFGERPCQ 221
IFG R +
Sbjct: 246 IFGHRAAK 253
>gi|322492041|emb|CBZ27316.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 245
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 102/236 (43%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+AV K + + GQ +F EN +QE
Sbjct: 14 TLALNYKAVCDTVAQ--ESGNRR---VTLIAVGKTKSPACLLNLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS-----LLSLEMIKQ 116
+K D FIG LQSNKV E++ + + + + +
Sbjct: 69 GEKAKE--LPEDTMWHFIGHLQSNKVKELLEGVPNLRVIQTIDSENLASKVNEGCRKYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIP-PAMGNPKPH 173
R L VY+QVNT E KSG P + + + L ++GLM I P + +
Sbjct: 127 GRPLEVYVQVNTSGEETKSGTEPGEATVTLAKYIVDECPLLQLKGLMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L++ ++ + +LSMGM+ D+ AI G+T+VR+GS IFGER
Sbjct: 187 FECLTKCRQDVSQAVQMAPEDLELSMGMSGDYVNAIRMGSTTVRVGSSIFGERYYP 242
>gi|322699267|gb|EFY91030.1| alanine racemase family protein (ISS) [Metarhizium acridum CQMa
102]
Length = 287
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/264 (25%), Positives = 93/264 (35%), Gaps = 45/264 (17%)
Query: 3 LGNKLQVFKQKIENSAI---LAKRPKDS-----------------VSLVAVSKMVDSKKI 42
L ++L K++I A ++R V LVAVSK+ I
Sbjct: 17 LISQLSSVKERIGALANGRDASRRGPPQHTSSTANGTTPSANTPQVRLVAVSKLKPVNDI 76
Query: 43 RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
+ + VQ FIG LQS + + ++ S
Sbjct: 77 LALHQAPASHRHFGENYTQELTQKAQLLPKTVQWHFIGGLQSGHCKTLAKIPNLFCVSSV 136
Query: 103 EKTASLLSLEM--------IKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQK 152
+ L L V++QVNT E KSG P +
Sbjct: 137 DTLKKANLLNTARGALLASDPSLPKLSVHVQVNTSGEEAKSGCAPGKETVALCREIIGNC 196
Query: 153 YQLNVEGLMCI-------PPAMGNPKPHFYLLSE----IARECKLT----KLSMGMTRDF 197
L++ GLM I N F L E +ARE L +LSMGM+ DF
Sbjct: 197 PNLHLLGLMTIGAIARSKATTAENENEDFIALKEQRDLVARELALDHGRLELSMGMSEDF 256
Query: 198 ELAIASGATSVRIGSGIFGERPCQ 221
E A+ G+ VR+GS IFG RP +
Sbjct: 257 EGAVVLGSGEVRVGSTIFGTRPAK 280
>gi|4103144|gb|AAD01685.1| hypothetical protein [Helicobacter pylori NCTC 11637]
Length = 222
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 72/218 (33%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDALITKIEKARIAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++S +++++ K A + L
Sbjct: 64 KMHSLEHL-PLEWHMIGSLQENKINALLSLKPALLDSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+MP T + +L ++GLMCI + K
Sbjct: 123 LLQVNSAYEESKSGVMPEGTLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDRLKNASVLSMGMSCDFELAIACGANLLRIGSFLF 220
>gi|255936135|ref|XP_002559094.1| Pc13g06610 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583714|emb|CAP91730.1| Pc13g06610 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 268
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 92/244 (37%), Gaps = 32/244 (13%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+ ++ +A+ + P + LVAVSK+ + + +
Sbjct: 19 VRARVSTAALQSPIPSKPIRLVAVSKLKPASDALALHQTPGSQLHFGENYLQELLEKSRL 78
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK--------------TASLLSLEMIK 115
++ FIG LQSNK + + V + ++
Sbjct: 79 LPASIKWHFIGGLQSNKCVTLARDVPGLWAVESVDSEKKAKLLDKGWGDRSPEMAATNHD 138
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAM------- 167
+ L VY+QVNT E K+GI P Q +L ++G M I
Sbjct: 139 EDGRLRVYVQVNTSGEENKAGIEPAGAAALCRYVREQCSRLKLQGFMTIGAIARSRVTTV 198
Query: 168 GNPKPHFYLLSEIAR----ECKL------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
N F LS+ E L +LSMGM+ DFE AIA G+ VR+G+ IFG+
Sbjct: 199 ENENEDFVCLSDTRDRVVRELGLVGDEAALELSMGMSSDFEGAIALGSDQVRVGTTIFGD 258
Query: 218 RPCQ 221
RP +
Sbjct: 259 RPPK 262
>gi|332671192|ref|YP_004454200.1| alanine racemase domain-containing protein [Cellulomonas fimi ATCC
484]
gi|332340230|gb|AEE46813.1| alanine racemase domain protein [Cellulomonas fimi ATCC 484]
Length = 256
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 24/239 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-----------GQVIFA 54
+L + ++ + A RP V ++ +K VD+ +IR+AL+ V+
Sbjct: 19 RLASVRSRVAAACSDAGRPAADVRVLLATKTVDAARIRLALAADAAAVAADPALTPVLVG 78
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QE K L IG LQSNKV+ + +E+V+ A LS
Sbjct: 79 ENRVQELVAKGPDLADLR-PTTHLIGPLQSNKVNAALRWVSCVESVTSLDLARRLSDRCA 137
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPK 171
+ L V +QVN E+ K G+ D + + + G M + P +
Sbjct: 138 DRPVALDVLVQVNVSGEVTKHGVPLTAAADLALAVAALPGVRLAGFMTVGLRSPDVAAVG 197
Query: 172 PHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L+ + E +LSMGM+ D E+A+A GAT VR+GS +FG+RP +
Sbjct: 198 AGYASLAALRDEVLTSGAPGTQGARELSMGMSGDLEVAVAHGATLVRVGSAVFGDRPAR 256
>gi|288904815|ref|YP_003430037.1| hypothetical protein GALLO_0604 [Streptococcus gallolyticus UCN34]
gi|306830847|ref|ZP_07464009.1| YggS family pyridoxal phosphate enzyme [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|288731541|emb|CBI13096.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304426870|gb|EFM29980.1| YggS family pyridoxal phosphate enzyme [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 224
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R K+SV+++AV+K VDS + G EN++ K+ K+ ++ IGS
Sbjct: 23 NRSKESVNVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEA-LKDRNLTWHLIGS 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ KV +++ D + K AS + + + ++QVN E K G ++
Sbjct: 82 LQRRKVKNVINFVDYFHALDSVKLASEIQK---RAEHTIKCFLQVNISEEESKHGFKVSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK--------LTKLS 190
+ + + ++ + GLM + P + + +++ +E + T+LS
Sbjct: 139 IDEALAAISEFDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ D+++AI +GAT VRIG+ F
Sbjct: 199 MGMSGDYKIAIRNGATFVRIGTSFF 223
>gi|170781772|ref|YP_001710104.1| hypothetical protein CMS_1377 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156340|emb|CAQ01488.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 213
Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 10/214 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ + + A R D V+ + V+K +R + G E++ QEA+ K +
Sbjct: 2 QADVADGIRAAGRRPDEVTTIVVTKFQPVSLLRALVDLGVRDLGESRHQEAQGKAAE-LE 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
V F+G LQ K ++ VI +V R LS + V++QVN
Sbjct: 61 GSGVAWHFVGQLQGKKARQVRRYASVIHSVDRPSLIDALS----SDEQETRVFLQVNLTA 116
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK----- 185
+ + G+ P + + + V G+M + P G P+ F L I+ + +
Sbjct: 117 DEGRGGVPPAEAEALAEHAAAAPGIRVLGVMAVAPDDGEPRRAFARLRGISDDVRRILPD 176
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM+ D A+ GAT +RIGS I G+RP
Sbjct: 177 ARAISAGMSGDLREALLEGATHLRIGSAITGKRP 210
>gi|205355561|ref|ZP_03222332.1| hypothetical protein Cj8421_0717 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346795|gb|EDZ33427.1| hypothetical protein Cj8421_0717 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 210
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 21/217 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +KI+N V LVA SK VD+ I G V F EN++Q +K
Sbjct: 3 LEQILEKIKN-----------VRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKE 51
Query: 67 P-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
K+ D++ FIG+LQSNK++ ++ ++ + + L ++
Sbjct: 52 NLDEKKLDIKWHFIGTLQSNKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLE 109
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGN------PKPHFYLLS 178
+N+ E KSG+ PNQ ++++ + + LN+ G+M I + + +
Sbjct: 110 INSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIKSFETTFKIY 169
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI ++ SMGM+ DFE+AI G+ VR+GS +F
Sbjct: 170 EILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILF 206
>gi|242794148|ref|XP_002482313.1| alanine racemase family protein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218718901|gb|EED18321.1| alanine racemase family protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 340
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 75/282 (26%), Positives = 104/282 (36%), Gaps = 64/282 (22%)
Query: 2 SLGNKLQVFKQKIENSAI----------LAKRPKDS-VSLVAVSKMVDSKKIRVALSCG- 49
+L L +I ++ RP D V LVAVSK+ + I S
Sbjct: 52 TLLTNLNNVLARISAASSIFQTTSTSTTRRHRPADKPVRLVAVSKLKPASDILALYSPSS 111
Query: 50 ------------------QVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
Q+ F EN QE + ++ FIG LQSNK + +
Sbjct: 112 FPSDETPTATTTTPSATQQLHFGENYFQELLE--KSRILPRGIRWHFIGGLQSNKCTSLA 169
Query: 92 SLFDVI-------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+ SL +Q + L V++QVNT E KSG+
Sbjct: 170 RDVRGLWAVESVDTEKKAKLLDKGWGERDFTSLSTEEQQQKLRVFVQVNTSGEENKSGVE 229
Query: 139 PNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----------RECKL 186
P T L ++GLM I + + +E RE L
Sbjct: 230 PALTPALCRYIRDNCPGLKLQGLMTIGAIARSKETTADKENEDFVTLIETREVVVRELGL 289
Query: 187 TK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
T+ LSMGM+ DFE AIA G+ VR+G+ IFGERP +
Sbjct: 290 TEQEADDFELSMGMSSDFEGAIALGSDQVRVGTTIFGERPVK 331
>gi|253577873|ref|ZP_04855145.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850191|gb|EES78149.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 192
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +KL + K+ IE + A R V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 LADKLNLVKKNIEEACDTAGRSPQEVTLIAVSKTKPVEMLKEAYDAGARVFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + DVQ IG LQ NKV I+ +I +V + A + E K+ +PV
Sbjct: 62 DKYDQMPS--DVQWHMIGHLQRNKVKYIIDKVSMIHSVDSVRLAEAIEKEAAKKDICMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + F+ L V+GLM I P + NP+ + + ++ +
Sbjct: 120 LIEVNVAGEESKFGLSVEEVLPFLEEISSYEHLQVKGLMTIAPFVANPEENREVFQKLKK 179
>gi|242211403|ref|XP_002471540.1| predicted protein [Postia placenta Mad-698-R]
gi|220729399|gb|EED83274.1| predicted protein [Postia placenta Mad-698-R]
Length = 259
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 38/248 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +Q++ + + +LVAVSK + + GQ+ F EN +QE K
Sbjct: 10 LQEIRQRVRQAIASSAPVDRQPTLVAVSKYKPASDVLACFELGQIDFGENYVQELVDKAE 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE---MIKQSRFLPVY 123
D++ FIG+LQSNK + S+ ++ + T + +L +++ L V
Sbjct: 70 Q--LPTDIRWHFIGTLQSNKAKILASIPNLYAVQTVTSTKAATALNKALPAERASPLNVL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDF--------VILCRQKYQLNVEGLMCIPPA--------- 166
+QVNT E KSG+ P + + + +L+++GLM I
Sbjct: 128 VQVNTSGEDNKSGLPPLPSDATEPDLVQLARHIIVECPRLHLQGLMTIGSLTESLSSTEK 187
Query: 167 ----MGNPKPHFYLLSEIARECKLTK------------LSMGMTRDFELAIASGATSVRI 210
LL E + LSMGM+ DFE A+ SG+ VR+
Sbjct: 188 PNEDFERLVRTRDLLQEALAQAGFLTDGGRWGEGGKLLLSMGMSSDFEAALNSGSDIVRV 247
Query: 211 GSGIFGER 218
G+GIFG R
Sbjct: 248 GTGIFGTR 255
>gi|223040193|ref|ZP_03610472.1| pyridoxal phosphate enzyme, YggS family [Campylobacter rectus
RM3267]
gi|222878554|gb|EEF13656.1| pyridoxal phosphate enzyme, YggS family [Campylobacter rectus
RM3267]
Length = 211
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 15/216 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL ++IEN+ R ++V L+AVSK V +K++ GQ F EN++QE K
Sbjct: 2 KLAQILERIENA-----RTGEAVKLIAVSKNVTTKEVLELFEQGQTSFGENRVQEL-KNK 55
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ ++ FIG LQSNK++ +++L + ++ + LP +Q
Sbjct: 56 SEILSNLPIEWHFIGRLQSNKINHLLALKPALW--QSCESVEAALAVDKRLICELPCLLQ 113
Query: 126 VNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N+ +E K GI P +D + ++ L G+M I + + +I
Sbjct: 114 INSAHEDTKQGISPEAAQDAFLQIAQECKFLKPIGVMSIGAHAIDERVVQKSFETTRKIY 173
Query: 182 RECK---LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ SMGM+ DFELAI SG+ +R+GS +
Sbjct: 174 ENLQPRGAKICSMGMSGDFELAIKSGSNMIRLGSIL 209
>gi|218283235|ref|ZP_03489296.1| hypothetical protein EUBIFOR_01884 [Eubacterium biforme DSM 3989]
gi|218215990|gb|EEC89528.1| hypothetical protein EUBIFOR_01884 [Eubacterium biforme DSM 3989]
Length = 205
Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
++VAVSK ++I G F EN++QE K+ P IG LQ+NKV
Sbjct: 15 NVVAVSKTRTKEEIDEVAKMGLTTFGENRVQEFIDKYDP-----KYTWHIIGHLQTNKVK 69
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV DVIE++ K A + + K V +++ + K+G K+F+
Sbjct: 70 YIVGKVDVIESLDSLKLAEEIEKQANKHGIIQKVLVELKISEDPNKTGYPFKDAKNFISQ 129
Query: 149 CRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELA 200
++ + ++G+MC+ + F + + E K + LSMGM++D++LA
Sbjct: 130 LQEFKHIQIKGIMCVASKTDNQELVESEFEQMHTLYLELKEQYSEIDTLSMGMSQDYKLA 189
Query: 201 IASGATSVRIGSGIF 215
+ G+ +VRIG IF
Sbjct: 190 VKHGSNTVRIGRAIF 204
>gi|123967982|ref|YP_001008840.1| TIM-barrel fold family protein [Prochlorococcus marinus str.
AS9601]
gi|123198092|gb|ABM69733.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. AS9601]
Length = 190
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
SK S++I+ + GQ F E+K+QEA +K + L++ + FIG +QSNK+ +IV
Sbjct: 2 SKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQN 61
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
F I +V + +S ++ + + +QV + K G P ++
Sbjct: 62 FKYIHSVDSFEKLQKISNISREEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQELK 121
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAIASGATSVRI 210
+++ GLM I P +PK + L + +A +L SMGM+ D+E AI +G+T +R+
Sbjct: 122 NISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDCSMGMSGDWEEAIDAGSTWLRL 181
Query: 211 GSGIFGER 218
G+ IFG R
Sbjct: 182 GALIFGGR 189
>gi|319936620|ref|ZP_08011033.1| hypothetical protein HMPREF9488_01866 [Coprobacillus sp. 29_1]
gi|319808177|gb|EFW04742.1| hypothetical protein HMPREF9488_01866 [Coprobacillus sp. 29_1]
Length = 217
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 103/216 (47%), Gaps = 22/216 (10%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
++I+ + +LVA +K +D K+I CG + EN++Q +K+
Sbjct: 10 KILEEIKPA-----------TLVAATKYIDEKEIEELEKCGCFYYGENRVQAFLEKYEKY 58
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ FIG+LQ+NKV I+ D+I +V+ L + K+ + + +QVN
Sbjct: 59 HGK--GHWHFIGTLQTNKVKYIIDKVDLIHSVNSYSLIDELEKQASKRDIKIHILLQVNI 116
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARECK- 185
E K G + + ++ ++ L V+GLM + P +P+F E+ + K
Sbjct: 117 ANENSKHGFTIEEMNNVMVYIQKCSALIVDGLMMMAPHIEAEQTRPYFQQTHELLHKLKR 176
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +LSMGM+ D+ +A+ GAT VRIG +F
Sbjct: 177 DFPHHPLKELSMGMSEDYHIALEEGATFVRIGRALF 212
>gi|323306047|gb|EGA59781.1| YBL036C-like protein [Saccharomyces cerevisiae FostersB]
Length = 231
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 20/216 (9%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ L+ VSK+ + I++ G F EN +QE + D++ FIG LQ
Sbjct: 12 NASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIE--KAKLLPDDIKWHFIGGLQ 69
Query: 84 SNKVSEIVSLFDVIETV-----SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+NK ++ + ++ + K + + + +Q+NT +E QKSG+
Sbjct: 70 TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLN 129
Query: 139 ---PNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLLSEIARECKLT--- 187
L + + + GLM I F L E ++
Sbjct: 130 NEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT 189
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 190 SLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 225
>gi|27904971|ref|NP_778097.1| hypothetical protein bbp497 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|34222840|sp|Q89A48|Y497_BUCBP RecName: Full=UPF0001 protein bbp_497
gi|27904369|gb|AAO27202.1| hypothetical protein bbp_497 [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 223
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 11/222 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ KQKI N + K + L+AVSK I+ A+ CGQ F EN +QE
Sbjct: 3 NIQKNIKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQE- 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++ +++ +IG +QSNK I F T++ +KTA LL+ L
Sbjct: 62 --SQPKIKLFNNIEWHYIGQIQSNKAHIIAKNFSWCHTITNKKTAVLLNKYRPYSLPKLN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
IQ+N K LN+ G+M +P I
Sbjct: 120 TLIQINIRDNTINIDDDIETIKQLAKTINSLDNLNLRGIMAMPYFKNTYLEQIQSYKYIH 179
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +S+G + D + A+ SG+T +RIGS IF
Sbjct: 180 LYFDILKKKYTYIDTVSLGTSHDIQAALYSGSTLLRIGSSIF 221
>gi|296273661|ref|YP_003656292.1| alanine racemase domain-containing protein [Arcobacter nitrofigilis
DSM 7299]
gi|296097835|gb|ADG93785.1| alanine racemase domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 226
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 109/219 (49%), Gaps = 10/219 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L +++E + + V ++A+SK S+++ GQ + ENK+Q+ K+K
Sbjct: 9 ENLDKLIERVEAARLQVS-HHHIVKIIAISKYSLSEEVATLYGAGQRAYGENKVQDLKEK 67
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+E ++ F+G LQ NK++ ++ +++++ A + ++ +++ +
Sbjct: 68 M-EKLEELPLEWHFVGRLQKNKINNLIDLNPTLVQSIDSLDLAIEFNKKLAAKNKKINAL 126
Query: 124 IQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SE 179
+Q+N+ YE K+G+MP + + + + +N++G+M I + + +
Sbjct: 127 LQINSAYEESKAGVMPEEAIETYKKIIDTCANINLKGVMSIGAHVADEDIIKKSFETTKK 186
Query: 180 IAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I E SMGM+ DFELAI+ G+ +R+GS +F
Sbjct: 187 IFDELAPLGAKYCSMGMSGDFELAISCGSNMIRVGSSLF 225
>gi|325977745|ref|YP_004287461.1| putative pyridoxal phosphate-dependent enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177673|emb|CBZ47717.1| Predicted pyridoxal phosphate-dependent enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 224
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 15/205 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R K+SV+++AV+K VDS + G EN++ K+ K+ + IGS
Sbjct: 23 NRSKESVNVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEA-LKDRKLTWHLIGS 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ KV +++ D + K AS + + + ++QVN E K G ++
Sbjct: 82 LQRRKVKNVINFVDYFHALDSVKLASEIQK---RAEHTIKCFLQVNISEEESKHGFKVSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK--------LTKLS 190
+ + + ++ + GLM + P + + +++ +E + T+LS
Sbjct: 139 IDEALAAISEFDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ D+++AI +GAT VRIG+ F
Sbjct: 199 MGMSGDYKIAIRNGATFVRIGTSFF 223
>gi|227833486|ref|YP_002835193.1| hypothetical protein cauri_1662 [Corynebacterium aurimucosum ATCC
700975]
gi|262184474|ref|ZP_06043895.1| hypothetical protein CaurA7_10813 [Corynebacterium aurimucosum ATCC
700975]
gi|227454502|gb|ACP33255.1| hypothetical protein cauri_1662 [Corynebacterium aurimucosum ATCC
700975]
Length = 236
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 100/228 (43%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I+ A A+RP L+ V+K ++ I + G AEN+ QEA+
Sbjct: 12 LRAGLERTRADIQRFAEAARRPA--PQLLPVTKFHPAEDIALLAELGITDVAENREQEAR 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LEMIKQ 116
K +++ IG +Q+ K + + + ++ EK A L E ++
Sbjct: 70 AKAEA---LPEMRFHMIGQVQTKKANHVARWAHSVHSLDSEKLARGLDRGVALAQERGQR 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPVYIQV+ + + G V + L + G M +PP P F
Sbjct: 127 QDSLPVYIQVSADGDTARGGCPLEDVPALVEVVDDLENLQLCGFMVVPPLESEPAEVFAQ 186
Query: 177 LSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + E K+S GM+ D E AIASG VR+G+GI GERP
Sbjct: 187 VRALTDEAAAKLGRDLKMSAGMSADMEAAIASGTDIVRVGTGIMGERP 234
>gi|207093275|ref|ZP_03241062.1| hypothetical protein HpylHP_10976 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 212
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 3 AKIEKARIAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHL 61
Query: 72 WDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ IGSLQ NK++ ++S ++ ++ K A + L +QVN+ Y
Sbjct: 62 -PLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAY 120
Query: 131 EIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK- 185
E KSG++P +T + +L ++GLMCI + K ++ + K
Sbjct: 121 EESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKN 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 181 ASVLSMGMSCDFELAIACGANLLRIGSFLF 210
>gi|227503286|ref|ZP_03933335.1| alanine racemase [Corynebacterium accolens ATCC 49725]
gi|227075789|gb|EEI13752.1| alanine racemase [Corynebacterium accolens ATCC 49725]
Length = 232
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 22/231 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L K+ I A RP S L+ V+K ++ I + G AEN+ QEA+
Sbjct: 8 LADNLAATKEHISAIAAEHDRP--SPQLLVVTKFHPAEDIALLAELGVEDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L + + IG +Q+ K + + + +V K A+ L E ++
Sbjct: 66 AKAQELDQL---RFHMIGQIQTKKANHVARWATSVHSVDSVKLANALDRGVSLAKERGQR 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP++IQV+ + + G++ + + + L GLM +PP + + F
Sbjct: 123 ENNLPIFIQVSADGDTSRGGVVREELDEVIEAVEAAEHLEFAGLMVVPPLDADAQEVFST 182
Query: 177 LS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + R+ K LS GM+ D + AIA+G VR+G+ I G+RP
Sbjct: 183 VRADVDRLSERLGRQLK---LSAGMSADMDAAIAAGTDIVRVGTSIMGKRP 230
>gi|317011255|gb|ADU85002.1| hypothetical protein HPSA_05125 [Helicobacter pylori SouthAfrica7]
Length = 222
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VA+SK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDSLIAKIEKARIAYSRH-HIVKIVAISKNASLESIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ +GSLQ NK++ ++S ++ ++ + A + L
Sbjct: 64 KMHSLEHL-PLEWHMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCETLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL---S 178
+QVN+ YE KSG+ P +T DF ++ ++GLMCI +
Sbjct: 123 LLQVNSAYEKSKSGVKPEETLDFYSQISETCKRIQLKGLMCIGAHTDDETKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQLKNASILSMGMSYDFELAIACGANLLRIGSFLF 220
>gi|323334742|gb|EGA76115.1| YBL036C-like protein [Saccharomyces cerevisiae AWRI796]
Length = 231
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ L+ VSK+ + I++ G F EN +QE + D++ FIG LQ
Sbjct: 12 NASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIE--KAKLLPDDIKWHFIGGLQ 69
Query: 84 SNKVSEIVSLFDVIETV-----SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+NK ++ + ++ + K + + + +Q+NT E QKSG+
Sbjct: 70 TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSREDQKSGLN 129
Query: 139 ---PNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLLSEIARECKLT--- 187
L + + + GLM I F L E ++
Sbjct: 130 NEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT 189
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 190 SLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 225
>gi|323310167|gb|EGA63359.1| YBL036C-like protein [Saccharomyces cerevisiae FostersO]
Length = 231
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ L+ VSK+ + I++ G F EN +QE + D++ FIG LQ
Sbjct: 12 NASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIE--KAKLLPDDIKWHFIGGLQ 69
Query: 84 SNKVSEIVSLFDVIETV-----SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+NK ++ + ++ + K + + + +Q+NT E QKSG+
Sbjct: 70 TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSXEDQKSGLN 129
Query: 139 ---PNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLLSEIARECKLT--- 187
L + + + GLM I F L E ++
Sbjct: 130 NEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT 189
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 190 SLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 225
>gi|295115171|emb|CBL36018.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SM4/1]
Length = 200
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 8/195 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++I + + R + V+L++VSK + ++ A G F EN +QE
Sbjct: 2 IRENLEGVRERIRLACERSGRRVEDVTLISVSKTKPVEMLQEAYEAGSRDFGENHVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + DV+ IG LQ NKV +++ +I +V A + E K+ + +
Sbjct: 62 EKHGQMPE--DVRWHMIGHLQKNKVRQVIDKVVLIHSVDTVGLAEQIEKEAAKRDLDIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G P + ++ V ++++GLM I P + N + + + ++
Sbjct: 120 LLEVNVAGEESKFGFCPEEVEEAVRKISLLPHVHIKGLMTIAPFVVNSEDNREVFKKLYN 179
Query: 183 EC------KLTKLSM 191
+ +SM
Sbjct: 180 LYVDIRGKNIDNVSM 194
>gi|50287463|ref|XP_446161.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525468|emb|CAG59085.1| unnamed protein product [Candida glabrata]
Length = 265
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 32/251 (12%)
Query: 1 MS-LGNK---LQVFKQK--IENSAILAKRPKDSVS------LVAVSKMVDSKKIRVALSC 48
MS + + +QK + + R + V+ L+AVSK+ + +++
Sbjct: 11 MSGVAKREVAYDSVRQKQLVSQFLEVENRVQSEVNGSKSVLLLAVSKLKPASDVQILYDH 70
Query: 49 GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SRE 103
G F EN +QE +K D++ FIG LQ+NK ++ + ++ +
Sbjct: 71 GVRDFGENYVQELIEKAE--LLPTDIRWHFIGGLQTNKCKDLAKVPNLFSVETVDSLKKA 128
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS---GIMPNQTKDFVILCRQKYQLNVEGL 160
K + + + + IQ+NT E QKS L + + GL
Sbjct: 129 KKLNEARGKYQPDANAISCNIQINTSQEDQKSGLVDEDEVYEIVKFFLSEDAKFVKLNGL 188
Query: 161 MCIPPAM--GNPKPHFYLLSEIAR-ECKLT-------KLSMGMTRDFELAIASGATSVRI 210
M I S++ + K+ KLSMGM+ DF+ AI G + VRI
Sbjct: 189 MTIGSWEVSHEEGEENKDFSKLVEWKSKIDSKFGTDLKLSMGMSADFKQAIRQGTSEVRI 248
Query: 211 GSGIFGERPCQ 221
G+ IFG RP +
Sbjct: 249 GTDIFGTRPPK 259
>gi|300871778|ref|YP_003786651.1| proline synthetase associated protein [Brachyspira pilosicoli
95/1000]
gi|300689479|gb|ADK32150.1| proline synthetase associated protein [Brachyspira pilosicoli
95/1000]
Length = 228
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 9/223 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQE 60
++ NK + I + ++ +VAVSK + I+ LS E+K Q
Sbjct: 5 TIKNKYDSIIENINSLKDKYNIN-YNIDVVAVSKYSSIETIKEFLSLNINLPLGESKAQS 63
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ + + ++ FIG +QSNKV IV D+I++V + A ++ E IK ++
Sbjct: 64 LRDRAEELNKNYDNIIWHFIGRIQSNKVKYIVKYADLIQSVDSIEIAEYINKEAIKNNKV 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Q N E QK G + + +N++GLM I + N
Sbjct: 124 QDILLQFNISNEEQKGGFNLSDYNMVYDKIKNLPNVNIKGLMGISLKVDNDFEIEKEFES 183
Query: 180 IA------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ ++ + LSMGMT D+ LAI GA +RIGSG G
Sbjct: 184 LNEVFIKLKDENTSILSMGMTNDYHLAIKHGANMIRIGSGFLG 226
>gi|224372989|ref|YP_002607361.1| hypothetical protein NAMH_0959 [Nautilia profundicola AmH]
gi|223589859|gb|ACM93595.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 219
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 14/218 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKD-SVSLVAVSK-MVDSKKIRVALSCGQVIFAENKLQEAKK 63
L Q++E + + R + V +VAV+K +++ +R + GQ F EN++Q+ +
Sbjct: 2 NLDQLIQRVEAARLR--RSEHLIVQIVAVTKYTKETEPLRRLYAEGQRAFGENRVQDMED 59
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L ++ FIG+LQ NK+++++ L + + + L + + +
Sbjct: 60 KVNALSDL-PIEWHFIGNLQKNKINKLLKLNPFM--IQSINSYELAEAINKRTDKPVRCL 116
Query: 124 IQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---E 179
+++N+ E K G+ P + ++ + +N++G+M I + + +
Sbjct: 117 LEINSAKEPTKHGLQPELAIETYLKIKENLPNINLQGVMTIGAHVDDETEIRKSFRLTYD 176
Query: 180 IARECK---LTKLSMGMTRDFELAIASGATSVRIGSGI 214
I + K SMGM+ DFE+AI G+ +R+GS +
Sbjct: 177 IFEKLKPYGAKICSMGMSGDFEIAIEEGSNMIRVGSAL 214
>gi|306836482|ref|ZP_07469455.1| YggS family pyridoxal phosphate enzyme [Corynebacterium accolens
ATCC 49726]
gi|304567645|gb|EFM43237.1| YggS family pyridoxal phosphate enzyme [Corynebacterium accolens
ATCC 49726]
Length = 232
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 22/231 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L K+ I A RP S L+ V+K ++ I + G AEN+ QEA+
Sbjct: 8 LADNLAATKEHISAIAAEHDRP--SPQLLVVTKFHPAEDIALLAELGVEDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
+K ++ IG +Q+ K + + + +V K A+ L E ++
Sbjct: 66 ---AKAQKLDQLRFHMIGQIQTKKANHVARWAASVHSVDSVKLANALDRGVSLAKERGQR 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP++IQV+ + + G++ + + + L GLM +PP + + F
Sbjct: 123 ESNLPIFIQVSADGDTSRGGVVREELDEVIEAVEAAEHLEFAGLMVVPPLDADAQEVFST 182
Query: 177 LS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + R+ K LS GM+ D + AIA+G VR+G+ I G+RP
Sbjct: 183 VRADVVRLSERLGRQLK---LSAGMSADMDAAIAAGTDIVRVGTSIMGKRP 230
>gi|154509371|ref|ZP_02045013.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC
17982]
gi|153799005|gb|EDN81425.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC
17982]
Length = 232
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 22/235 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSL-VAVSKMVDSKKIRV----ALSCG-QVIFA 54
MS+ + + +I+ + R DSV L +AV K K+ R G ++
Sbjct: 1 MSIPEAIAAARDRIDRATSACGRT-DSVHLELAV-KTRTPKECRAAAAALREAGLPILLG 58
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA+ +R+ ++ IG LQSNK+++ ++ D IE++ AS +
Sbjct: 59 HNRVQEARATAEAIREVPGARIHLIGPLQSNKINQALACVDAIESLDSPALASKIDA--- 115
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPK 171
+ + LPV+++VN E K G P+ + L + G M + P + +
Sbjct: 116 RATGTLPVFVEVNVSGETTKHGCAPSDVAALIDAVEASAHLQLAGFMTVGLNSPVEADVR 175
Query: 172 PHFYLLSEIARE----CKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L I E + + LSMGM+RD E AIA GAT VR+G+ +FG R
Sbjct: 176 AAYAQLRGIRDEAAARLGINESDLALSMGMSRDLEWAIAEGATIVRLGTAVFGAR 230
>gi|157737116|ref|YP_001489799.1| hypothetical protein Abu_0870 [Arcobacter butzleri RM4018]
gi|157698970|gb|ABV67130.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
Length = 226
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L K+E + + V ++ +SK ++ I+ GQ F ENK+Q+ K+K
Sbjct: 8 KNLDNLITKVEGARLKIS-EHHIVKVIGISKYSTTQDIKTLYEAGQRAFGENKVQDLKQK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L + ++ F+G+LQ NK++ ++ +I ++ A L+ ++ +++ L
Sbjct: 67 SEELDEL-PIEWHFVGTLQKNKINNLIDLNPTLIHSLDSLDLAQELNKKLEAKNKKLSCL 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLS---E 179
+Q+N+ E KSG+ + ++G+MCI + K
Sbjct: 126 LQINSANEDTKSGVEAKDAVKIYKEILETCPNIILKGVMCIGANSTDIKLIKESFKITKN 185
Query: 180 IAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I E SMGM+ DFELAIA G+ +R+GS +F
Sbjct: 186 IFDELVPFGAKYCSMGMSSDFELAIACGSNMIRVGSTLF 224
>gi|315636798|ref|ZP_07892024.1| TIM-barrel fold protein [Arcobacter butzleri JV22]
gi|315478924|gb|EFU69631.1| TIM-barrel fold protein [Arcobacter butzleri JV22]
Length = 226
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L K+E + + V ++ +SK ++ I+ GQ F ENK+Q+ K+K
Sbjct: 8 KNLDNLITKVEGARLKIS-EHHIVKIIGISKYSTTQDIKTLYEAGQRAFGENKVQDLKQK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L + ++ F+G+LQ NK++ ++ +I ++ A L+ ++ +++ L
Sbjct: 67 SEELDEL-PIEWHFVGTLQKNKINNLIDLNPTLIHSLDSLDLAQELNKKLEAKNKNLSCL 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLS---E 179
+Q+N+ E KSG+ + ++G+MCI + K
Sbjct: 126 LQINSANEDTKSGVEAKDAIKIYKEILETCPNIILKGVMCIGANSTDIKLIKESFKITKN 185
Query: 180 IAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E SMGM+ DFELAIA G+ +R+GS +F
Sbjct: 186 VFDELVPFGAKYCSMGMSSDFELAIACGSNMIRVGSTLF 224
>gi|152992349|ref|YP_001358070.1| hypothetical protein SUN_0755 [Sulfurovum sp. NBC37-1]
gi|151424210|dbj|BAF71713.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 227
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L IE + I V LVAV K + + I GQ F EN++Q+ K
Sbjct: 8 LRANLDEVIWNIEEARISVS-EHHIVQLVAVGKYTEVENIVTLYKLGQRAFGENQVQQLK 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ L + ++ IG LQ NK++ ++ +++++ A L+ ++ + +
Sbjct: 67 ARMAALEEL-PLEWHMIGRLQKNKINNLIDLRPSLMQSLDSLSLAEELNKKLDAKEAKMN 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
+Q+N+ E KSG+ P + +D + ++ + ++G+M I + K
Sbjct: 126 CLLQINSAREETKSGVTPEEAQDIYLQIKESCPNITLKGVMTIGAHTDDTKLIQQSFETT 185
Query: 178 ---SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E + T SMGM+ D+ LAI G+ +R+GS +F
Sbjct: 186 QSIYEKLEKEGATVCSMGMSSDYALAIKCGSNLIRVGSALF 226
>gi|327398334|ref|YP_004339203.1| hypothetical protein Hipma_0165 [Hippea maritima DSM 10411]
gi|327180963|gb|AEA33144.1| protein of unknown function UPF0001 [Hippea maritima DSM 10411]
Length = 223
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 27/233 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + ++I + V + A +K + +I + G + +N +++
Sbjct: 1 MSIKERTEALLREI----------PEGVIVEAAAKTRTADEILQVIDAGITVIGQNYIKD 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF----DVIETVSREKTASLLSLEMIKQ 116
+ + + K+ + FIGS+++ K + + ++IET+ + A LS +
Sbjct: 51 LRAVYDKIGKK--AKWHFIGSVKNQKNELFRTKYLKIINMIETIDSFEDAERLSKKCEAI 108
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
S+ +P+ I++N+ E QKSG+MP+ + + + VEGLM + A P + +
Sbjct: 109 SKVMPILIEINSAEEPQKSGVMPDDAINLIKHISLLKNIRVEGLMTMGKATEEPEDARIY 168
Query: 174 FYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L +I E K + LSMGMT +++AI GA VRIG+ IFG R
Sbjct: 169 FKLTKQIFDEVKRLGIDNVEMKYLSMGMTDTYKIAIQEGANIVRIGTAIFGPR 221
>gi|215446377|ref|ZP_03433129.1| hypothetical protein MtubT_10703 [Mycobacterium tuberculosis T85]
Length = 259
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K L V +G +Q NK + +V + + L
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK--LTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|15609285|ref|NP_216664.1| hypothetical protein Rv2148c [Mycobacterium tuberculosis H37Rv]
gi|31793328|ref|NP_855821.1| hypothetical protein Mb2172c [Mycobacterium bovis AF2122/97]
gi|121638030|ref|YP_978254.1| hypothetical protein BCG_2165c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661964|ref|YP_001283487.1| hypothetical protein MRA_2163 [Mycobacterium tuberculosis H37Ra]
gi|148823357|ref|YP_001288111.1| hypothetical protein TBFG_12178 [Mycobacterium tuberculosis F11]
gi|167967849|ref|ZP_02550126.1| hypothetical protein MtubH3_07376 [Mycobacterium tuberculosis
H37Ra]
gi|215403535|ref|ZP_03415716.1| hypothetical protein Mtub0_07608 [Mycobacterium tuberculosis
02_1987]
gi|215411865|ref|ZP_03420649.1| hypothetical protein Mtub9_11114 [Mycobacterium tuberculosis
94_M4241A]
gi|215431078|ref|ZP_03428997.1| hypothetical protein MtubE_10460 [Mycobacterium tuberculosis
EAS054]
gi|218753872|ref|ZP_03532668.1| hypothetical protein MtubG1_10729 [Mycobacterium tuberculosis GM
1503]
gi|219558127|ref|ZP_03537203.1| hypothetical protein MtubT1_12817 [Mycobacterium tuberculosis T17]
gi|224990524|ref|YP_002645211.1| hypothetical protein JTY_2159 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289443653|ref|ZP_06433397.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
T46]
gi|289447776|ref|ZP_06437520.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
CPHL_A]
gi|289554065|ref|ZP_06443275.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570264|ref|ZP_06450491.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574831|ref|ZP_06455058.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
K85]
gi|289754258|ref|ZP_06513636.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289758269|ref|ZP_06517647.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|289762310|ref|ZP_06521688.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|297634737|ref|ZP_06952517.1| hypothetical protein MtubK4_11471 [Mycobacterium tuberculosis KZN
4207]
gi|298525643|ref|ZP_07013052.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|54040489|sp|P67084|Y2172_MYCBO RecName: Full=UPF0001 protein Mb2172c
gi|54042946|sp|P67083|Y2148_MYCTU RecName: Full=UPF0001 protein Rv2148c/MT2207
gi|2104330|emb|CAB08645.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|31618920|emb|CAD97025.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493678|emb|CAL72153.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506116|gb|ABQ73925.1| hypothetical protein MRA_2163 [Mycobacterium tuberculosis H37Ra]
gi|148721884|gb|ABR06509.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773637|dbj|BAH26443.1| hypothetical protein JTY_2159 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289416572|gb|EFD13812.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
T46]
gi|289420734|gb|EFD17935.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
CPHL_A]
gi|289438697|gb|EFD21190.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539262|gb|EFD43840.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
K85]
gi|289544018|gb|EFD47666.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289694845|gb|EFD62274.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289709816|gb|EFD73832.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289713833|gb|EFD77845.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|298495437|gb|EFI30731.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|328458550|gb|AEB03973.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 258
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K L V +G +Q NK + +V + + L
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK--LTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|215427527|ref|ZP_03425446.1| hypothetical protein MtubT9_14519 [Mycobacterium tuberculosis T92]
gi|289750744|ref|ZP_06510122.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691331|gb|EFD58760.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length = 258
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K L V +G +Q NK + +V + + L
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRVCAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK--LTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|326903765|gb|EGE50698.1| hypothetical protein TBPG_01647 [Mycobacterium tuberculosis W-148]
Length = 262
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K L V +G +Q NK + +V + + L
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 197
Query: 165 PAMGNPKPHFYLLSEIARECK--LTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 256
>gi|253798787|ref|YP_003031788.1| hypothetical protein TBMG_01833 [Mycobacterium tuberculosis KZN
1435]
gi|254364953|ref|ZP_04980999.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551185|ref|ZP_05141632.1| hypothetical protein Mtube_12086 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187147|ref|ZP_05764621.1| hypothetical protein MtubCP_14083 [Mycobacterium tuberculosis
CPHL_A]
gi|260201262|ref|ZP_05768753.1| hypothetical protein MtubT4_14384 [Mycobacterium tuberculosis T46]
gi|260205443|ref|ZP_05772934.1| hypothetical protein MtubK8_14177 [Mycobacterium tuberculosis K85]
gi|289745421|ref|ZP_06504799.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|297731726|ref|ZP_06960844.1| hypothetical protein MtubKR_11581 [Mycobacterium tuberculosis KZN
R506]
gi|306780176|ref|ZP_07418513.1| hypothetical protein TMBG_00696 [Mycobacterium tuberculosis
SUMu002]
gi|306784921|ref|ZP_07423243.1| hypothetical protein TMCG_00244 [Mycobacterium tuberculosis
SUMu003]
gi|306789288|ref|ZP_07427610.1| hypothetical protein TMDG_00626 [Mycobacterium tuberculosis
SUMu004]
gi|306793616|ref|ZP_07431918.1| hypothetical protein TMEG_02515 [Mycobacterium tuberculosis
SUMu005]
gi|306798007|ref|ZP_07436309.1| hypothetical protein TMFG_01110 [Mycobacterium tuberculosis
SUMu006]
gi|306803886|ref|ZP_07440554.1| hypothetical protein TMHG_01338 [Mycobacterium tuberculosis
SUMu008]
gi|306808458|ref|ZP_07445126.1| hypothetical protein TMGG_00706 [Mycobacterium tuberculosis
SUMu007]
gi|306968282|ref|ZP_07480943.1| hypothetical protein TMIG_00815 [Mycobacterium tuberculosis
SUMu009]
gi|306972511|ref|ZP_07485172.1| hypothetical protein TMJG_00410 [Mycobacterium tuberculosis
SUMu010]
gi|307080220|ref|ZP_07489390.1| hypothetical protein TMKG_00410 [Mycobacterium tuberculosis
SUMu011]
gi|307084801|ref|ZP_07493914.1| hypothetical protein TMLG_03773 [Mycobacterium tuberculosis
SUMu012]
gi|308232048|ref|ZP_07414735.2| hypothetical protein TMAG_00336 [Mycobacterium tuberculosis
SUMu001]
gi|313659061|ref|ZP_07815941.1| hypothetical protein MtubKV_11596 [Mycobacterium tuberculosis KZN
V2475]
gi|134150467|gb|EBA42512.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|253320290|gb|ACT24893.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289685949|gb|EFD53437.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308215187|gb|EFO74586.1| hypothetical protein TMAG_00336 [Mycobacterium tuberculosis
SUMu001]
gi|308326946|gb|EFP15797.1| hypothetical protein TMBG_00696 [Mycobacterium tuberculosis
SUMu002]
gi|308330381|gb|EFP19232.1| hypothetical protein TMCG_00244 [Mycobacterium tuberculosis
SUMu003]
gi|308334215|gb|EFP23066.1| hypothetical protein TMDG_00626 [Mycobacterium tuberculosis
SUMu004]
gi|308338011|gb|EFP26862.1| hypothetical protein TMEG_02515 [Mycobacterium tuberculosis
SUMu005]
gi|308341698|gb|EFP30549.1| hypothetical protein TMFG_01110 [Mycobacterium tuberculosis
SUMu006]
gi|308345188|gb|EFP34039.1| hypothetical protein TMGG_00706 [Mycobacterium tuberculosis
SUMu007]
gi|308349494|gb|EFP38345.1| hypothetical protein TMHG_01338 [Mycobacterium tuberculosis
SUMu008]
gi|308354124|gb|EFP42975.1| hypothetical protein TMIG_00815 [Mycobacterium tuberculosis
SUMu009]
gi|308358065|gb|EFP46916.1| hypothetical protein TMJG_00410 [Mycobacterium tuberculosis
SUMu010]
gi|308362003|gb|EFP50854.1| hypothetical protein TMKG_00410 [Mycobacterium tuberculosis
SUMu011]
gi|308365635|gb|EFP54486.1| hypothetical protein TMLG_03773 [Mycobacterium tuberculosis
SUMu012]
gi|323719303|gb|EGB28445.1| hypothetical protein TMMG_01428 [Mycobacterium tuberculosis
CDC1551A]
Length = 261
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K L V +G +Q NK + +V + + L
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 197
Query: 165 PAMGNPKPHFYLLSEIARECK--LTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 256
>gi|57234460|ref|YP_181491.1| hypothetical protein DET0758 [Dehalococcoides ethenogenes 195]
gi|57224908|gb|AAW39965.1| conserved hypothetical protein TIGR00044 [Dehalococcoides
ethenogenes 195]
Length = 220
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 25/230 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSL-VAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ ++ ++ V+L AV K ++ I A+ G I N L E
Sbjct: 4 DITRNIRDILAEL----------PPDVTLEAAVKKRQPAE-ILAAIEAGVKIIGHNYLSE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++ + V+ FIG LQSNK +IV LF V+ETV + AS L+ + + L
Sbjct: 53 AEQTYP--LIGEKVEWHFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVL 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V+I++N+G E QKSG++P T + L + GLM + PA+ +P +
Sbjct: 111 SVFIEINSGREEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDPDELRSVFRLT 170
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L LSMGM+ +++A+ G VR+G+ IFG RP
Sbjct: 171 KNKFDEIAAMGLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP 220
>gi|157415006|ref|YP_001482262.1| hypothetical protein C8J_0686 [Campylobacter jejuni subsp. jejuni
81116]
gi|157385970|gb|ABV52285.1| hypothetical protein C8J_0686 [Campylobacter jejuni subsp. jejuni
81116]
gi|307747644|gb|ADN90914.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
jejuni M1]
gi|315931921|gb|EFV10876.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 210
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
+V LVA SK VD+ I G V F EN++Q +K K+ D++ FIG+LQS
Sbjct: 11 KNVRLVAASKYVDASTIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
NK++ ++ ++ + + L +++N+ E KSG+ PNQ +
Sbjct: 71 NKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGN------PKPHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|157164475|ref|YP_001466918.1| hypothetical protein CCC13826_0125 [Campylobacter concisus 13826]
gi|112800291|gb|EAT97635.1| pyridoxal phosphate enzyme, YggS family [Campylobacter concisus
13826]
Length = 212
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ +KIEN + V+LVAVSK V ++R + GQ F EN++QE
Sbjct: 1 MMIV--LKDLLEKIENLSK-------DVTLVAVSKNVTCTEVRELYAQGQRNFGENRVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + L+ D++ IG LQ+NK+++++SL V+ + + S L
Sbjct: 52 LAKKELELQNFTDIKWHMIGRLQNNKINQMISLKPVLW--QSCDSFERAVEVDKRLSYKL 109
Query: 121 PVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
+Q+N+ E K G+ N T+ + + + +N++G+M I + PK
Sbjct: 110 DTLLQINSADEDTKQGVSVANATEIYERIQSECKNINLKGVMSIGAHVDEPKEVQKSFEL 169
Query: 178 -SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+I K + SMGM+ DFELAI SG+ +R+G+ +
Sbjct: 170 TYKIYESLKPKGASICSMGMSSDFELAIKSGSNMIRLGTML 210
>gi|15841640|ref|NP_336677.1| hypothetical protein MT2207 [Mycobacterium tuberculosis CDC1551]
gi|254232307|ref|ZP_04925634.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|13881892|gb|AAK46491.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|124601366|gb|EAY60376.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length = 264
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 21 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 80
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K L V +G +Q NK + +V + + L
Sbjct: 81 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 140
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 141 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 200
Query: 165 PAMGNPKPHFYLLSEIARECK--LTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 201 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 259
>gi|149194613|ref|ZP_01871709.1| hypothetical protein CMTB2_01179 [Caminibacter mediatlanticus TB-2]
gi|149135357|gb|EDM23837.1| hypothetical protein CMTB2_01179 [Caminibacter mediatlanticus TB-2]
Length = 222
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 7 LQVFKQKIENSAILAKRPKD-SVSLVAVSK-MVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L Q++E + + R + V +VAV+K D + ++ GQ F EN++Q+ ++
Sbjct: 3 LDELIQRVEVARLR--RSEHLIVQIVAVTKYTNDLEVLKRLYEDGQRAFGENRVQD-MEE 59
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ E ++ FIG+LQ NK+++++ L + + + L + ++ + +
Sbjct: 60 KVNGLSELPIEWHFIGNLQKNKINKLLKLNPFM--IQSINSYELAQAINKRANKPIRCLL 117
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKPHFYLLS---EI 180
++N+ E K G+ P + D + ++ +N++G+M I + + EI
Sbjct: 118 EINSSKEPTKHGLEPEKAIDTYLQIKESLPNINLQGVMTIGAHTDDEREIRKSFRLTYEI 177
Query: 181 ARECKL---TKLSMGMTRDFELAIASGATSVRIGSGI 214
+ KL SMGM+ DFE+AI G+ +R+GS +
Sbjct: 178 FDKLKLYGAKICSMGMSGDFEIAIEEGSNMIRVGSAL 214
>gi|255019977|ref|ZP_05292051.1| hypothetical protein ACA_2738 [Acidithiobacillus caldus ATCC 51756]
gi|254970636|gb|EET28124.1| hypothetical protein ACA_2738 [Acidithiobacillus caldus ATCC 51756]
Length = 243
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 9/205 (4%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+V L+AVSK V + ++R+A G F EN LQEA K L + FIG +Q N
Sbjct: 39 PTVRLLAVSKGVAASRLRLAYGLGLRHFGENYLQEALDKQKALADLDGIVWHFIGRIQRN 98
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K I F +E++ R + L V I+VN G E K G+ + +
Sbjct: 99 KTLAIARHFQWVESIDR-ALVAERLNHARAGMPPLDVLIEVNAGGESSKGGVGLDALESL 157
Query: 146 VILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECK-------LTKLSMGMTRDF 197
L + GLM + P F ++ + + + LSMG + D+
Sbjct: 158 ARAIVTLPHLRLRGLMALVRPEPEQADADFATMAAAFQLLQDTFPKQAIDTLSMGTSTDY 217
Query: 198 ELAIASGATSVRIGSGIFGERPCQT 222
A+ GAT +R+G+ IFG R +T
Sbjct: 218 ARALPMGATQIRVGTAIFGPRSQET 242
>gi|254821929|ref|ZP_05226930.1| hypothetical protein MintA_18497 [Mycobacterium intracellulare ATCC
13950]
Length = 258
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ ++K + + G E++ QEA
Sbjct: 15 LTHALAAVRSRLAAAAQAAGRNAAEIEVLPITKYFPAIDVVTLSRLGCRAVGESRDQEAT 74
Query: 63 KKW---------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE- 112
K + + +G +Q NK + +V + + L
Sbjct: 75 AKVAEVTRLLAAPERANVGNPRWHMVGHIQRNKARSVACWAHTAHSVDSTQLVTALDRGV 134
Query: 113 -----MIKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+++ + +Y+QV+ + + G+ P + L++ GLM IP
Sbjct: 135 AAALAEGRRTDPMRIYVQVSLDGDESRGGVDISRPGAVDQMCAQVEEASNLDLAGLMAIP 194
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G R
Sbjct: 195 PLDSDPDEAFDRLQSEHRRVLESHRNAVGLSAGMSNDFEIAVKHGSTCVRVGTALLGRR 253
>gi|172040880|ref|YP_001800594.1| hypothetical protein cur_1200 [Corynebacterium urealyticum DSM
7109]
gi|171852184|emb|CAQ05160.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
Length = 236
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 21/230 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q+I + L+ ++K + I + + G EN+ QEAK
Sbjct: 17 LAENLRAVRQRIAVA--------GGADLLPITKFHPVEDIELLRAGGIHAVGENREQEAK 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
+K L V++ +G +Q+NK + + + T E+ + L E +
Sbjct: 69 RKATELAGS--VEIHMVGQIQTNKANSVARWAAAVHTADSERLITALERGAGLALERGDR 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ LPV +Q + + Q+ G +Q L L + GLM +PP +P F
Sbjct: 127 AEKLPVLVQFSADGDPQRGGAPEDQIDQLADLVAGSEHLELRGLMTVPPLGSDPAEVFAR 186
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ S GM+ D E+AI G+T VR+G+ I G RP +
Sbjct: 187 GRTLLDGISDRVLGAPVYSAGMSHDLEIAIGEGSTLVRVGTDIMGSRPVR 236
>gi|118618790|ref|YP_907122.1| hypothetical protein MUL_3496 [Mycobacterium ulcerans Agy99]
gi|118570900|gb|ABL05651.1| conserved protein [Mycobacterium ulcerans Agy99]
Length = 258
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 94/239 (39%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L + L + + ++ +A A R + L+ ++K + + + G E++ QE
Sbjct: 15 LTHALALVRSRLAAAAEAAGRKVSEIELLPITKFFPATDVAILARLGCRAVGESRDQEAS 74
Query: 61 -------AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TAS 107
+Q +G +Q NKV + + ++ + A
Sbjct: 75 AKVAELARMFSAPMRSGSRGIQWHMVGQIQRNKVRSLANWAHTAHSIDTPQLVTALDRAI 134
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSG---IMPNQTKDFVILCRQKYQLNVEGLMCIP 164
++ ++ L V++QV+ ++ + G P L + GLM +P
Sbjct: 135 TTAIADRRRGNPLRVHVQVSLDGDVSRGGVDMTDPGAVDRICAQVSDSQSLELIGLMGVP 194
Query: 165 PAMGNPKPHFYLLS-EIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P + + F L E R + +LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PRDWDQEKAFERLQSEHNRVLESFPTAVRLSAGMSDDLEIAVKHGSTCVRVGTALLGSR 253
>gi|295662246|ref|XP_002791677.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
gi|226279803|gb|EEH35369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
Length = 303
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 73/277 (26%), Positives = 103/277 (37%), Gaps = 60/277 (21%)
Query: 2 SLGNKLQVFKQKIENSAILA----------KRPKDS--VSLVAVSKMVDSKKIRVALSCG 49
+L L +I +++ A RP+ V LVAVSK+ + I++ +
Sbjct: 24 TLLANLSAVTARIASASASAAANTSRTKTQSRPQTQRPVRLVAVSKLKPASDIQILHNHD 83
Query: 50 QV-IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV--------------------S 88
F EN LQE + ++ FIG LQSNK
Sbjct: 84 PRLHFGENYLQELLE--KSKVLPCGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTEKK 141
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ E + I L V++QVNT E KSG+ P +
Sbjct: 142 ASLLDRGWGERDVDVNEEGGKKGQSINAGDRLRVFVQVNTSGEESKSGVKPAEAVSLCRF 201
Query: 149 CR-QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIARECKLTKL----------- 189
R + +L ++GLM I + N F L E + +L
Sbjct: 202 IREKCPRLKLQGLMTIGAIARSKATTVENENEDFVCLRETRDMVE-KELELVADEGEGGA 260
Query: 190 -----SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGM+ DFE AIA G+ VRIGS IFG RP +
Sbjct: 261 EGLELSMGMSEDFEGAIAMGSNQVRIGSTIFGARPPK 297
>gi|86151834|ref|ZP_01070048.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153552|ref|ZP_01071756.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|121613343|ref|YP_001000415.1| hypothetical protein CJJ81176_0742 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005357|ref|ZP_02271115.1| hypothetical protein Cjejjejuni_03810 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|283956128|ref|ZP_06373615.1| hypothetical protein C1336_000100090 [Campylobacter jejuni subsp.
jejuni 1336]
gi|85841463|gb|EAQ58711.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85843278|gb|EAQ60489.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|87249354|gb|EAQ72314.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 81-176]
gi|283792448|gb|EFC31230.1| hypothetical protein C1336_000100090 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 210
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
+V LVA SK VD+ I G V F EN++Q +K K+ D++ FIG+LQS
Sbjct: 11 KNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
NK++ ++ ++ + + L +++N+ E KSG+ PNQ +
Sbjct: 71 NKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGN------PKPHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|57237021|ref|YP_178823.1| hypothetical protein CJE0819 [Campylobacter jejuni RM1221]
gi|86149761|ref|ZP_01067990.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88596934|ref|ZP_01100170.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|148926684|ref|ZP_01810365.1| hypothetical protein Cj8486_0738c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|218562358|ref|YP_002344137.1| hypothetical protein Cj0719c [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|57165825|gb|AAW34604.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
RM1221]
gi|85839579|gb|EAQ56839.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88190623|gb|EAQ94596.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112360064|emb|CAL34856.1| conserved hypothetical protein Cj0719c [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845203|gb|EDK22298.1| hypothetical protein Cj8486_0738c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|284925975|gb|ADC28327.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315058182|gb|ADT72511.1| hypothetical protein CJS3_0770 [Campylobacter jejuni subsp. jejuni
S3]
gi|315926835|gb|EFV06209.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930590|gb|EFV09622.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
Length = 210
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
+V LVA SK VD+ I G V F EN++Q +K K+ D++ FIG+LQS
Sbjct: 11 KNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
NK++ ++ ++ + + L +++N+ E KSG+ PNQ +
Sbjct: 71 NKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGN------PKPHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|73748569|ref|YP_307808.1| hypothetical protein cbdb_A730 [Dehalococcoides sp. CBDB1]
gi|147669329|ref|YP_001214147.1| alanine racemase domain-containing protein [Dehalococcoides sp.
BAV1]
gi|289432595|ref|YP_003462468.1| alanine racemase domain protein [Dehalococcoides sp. GT]
gi|73660285|emb|CAI82892.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146270277|gb|ABQ17269.1| alanine racemase domain protein [Dehalococcoides sp. BAV1]
gi|288946315|gb|ADC74012.1| alanine racemase domain protein [Dehalococcoides sp. GT]
Length = 220
Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats.
Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ ++ V LVA K +I A++ G I N L EA
Sbjct: 4 NIAQNVRDILAEL----------PPDVVLVAAVKKRQPAEILAAIAAGVKIIGHNYLSEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++ + + FIG LQSNK +IV LF V+ETV + AS L+ + + +
Sbjct: 54 EETYP--FIGDKAEWHFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVMS 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V+I++N+G E QKSG++P +T + L + GLM + PA+ +P+ +
Sbjct: 112 VFIEINSGREKQKSGVLPEETVELAKRISGLSNLKLAGLMTMGPALEDPEELRTIFRLT- 170
Query: 182 RECKLTK-------------LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ K + LSMGM+ +++A+ G VR+G+ IFG RP
Sbjct: 171 -KIKFDEIAVMGLPNTELKFLSMGMSVSYKVAVQEGTNLVRLGTRIFGNRP 220
>gi|40217453|emb|CAE46386.1| conserved hypothetical protein [uncultured archaeon]
gi|268323836|emb|CBH37424.1| conserved hypothetical protein containing N-terminal domain of
alanine racemase [uncultured archaeon]
Length = 224
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 16/222 (7%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ + ++ V L A +K +++I A+ G I EN +QEA++ +
Sbjct: 5 EQIRGNVKRLLAEL---PKEVVLEAAAKTRTTEEIMAAIEAGITIVGENYIQEAERAFKV 61
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ + V+ FIG LQ NKV + V LFD+IET+ A ++ K + +P+ I+VN
Sbjct: 62 IGRM--VKWHFIGHLQRNKVKKAVDLFDLIETIDSFSIAEEINRVSSKIGKIMPILIEVN 119
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IAREC 184
+G E +K G++P + V+ + +EGLM + P + + E I +
Sbjct: 120 SGREPRKFGVLPEDVDELVVKISALASVKIEGLMTMGPYEEDIEKSRLYFRETKEIFEQI 179
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ + +AI GA VR+G GIFG R
Sbjct: 180 KKSGIPAVDMRYLSMGMSDSYIIAIEEGANIVRVGIGIFGPR 221
>gi|52549126|gb|AAU82975.1| predicted enzyme with a TIM-barrel fold [uncultured archaeon
GZfos24D9]
Length = 224
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 16/222 (7%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ + ++ V L A +K +++ A+ G I EN +QEA++ +
Sbjct: 5 EQIRGNVKRLLAEL---PKEVVLEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEV 61
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ + V+ FIG LQ NKV + V LFD+IET+ A ++ K + +P+ I++N
Sbjct: 62 IGRV--VKWHFIGHLQRNKVKKAVELFDLIETIDSFSIAEEVNSVSSKIGKIMPILIEIN 119
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIAREC 184
+G E QK G+ P + V+ + + GLM + P + + EI
Sbjct: 120 SGREPQKFGVFPEDVAELVVKISALASVKIVGLMTMGPYEEDIEKSRLYFRAAKEIFERI 179
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ + +AI GA VR+G+GIFG R
Sbjct: 180 KKSGIPSVDMRYLSMGMSDSYNIAIEEGANIVRVGTGIFGPR 221
>gi|331084011|ref|ZP_08333118.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402373|gb|EGG81943.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
6_1_63FAA]
Length = 180
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++++E + A R ++ V+L+AVSK I L F ENK+QE
Sbjct: 1 MSVCENYKEVEKRVEEACKRAGRKREEVTLIAVSKTKPVSMIEELLPLNVRDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + IG LQ NKV IV +I +V + A +S K+
Sbjct: 61 LTAKAEILPSA--LHWHMIGHLQRNKVKYIVDKACIIHSVDSLRLAEEISKAAQKKQVTA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+VN E K G+ ++ + + ++GLM I P + NP+ + ++ ++
Sbjct: 119 KILIEVNVAEEESKFGVRTSELLPLIEAISLLPNIAIKGLMTIAPYVENPEENRWIFQKL 178
Query: 181 A 181
Sbjct: 179 K 179
>gi|255326234|ref|ZP_05367320.1| pyridoxal phosphate enzyme, YggS family [Rothia mucilaginosa ATCC
25296]
gi|255296688|gb|EET76019.1| pyridoxal phosphate enzyme, YggS family [Rothia mucilaginosa ATCC
25296]
Length = 277
Score = 114 bits (285), Expect = 9e-24, Method: Composition-based stats.
Identities = 62/257 (24%), Positives = 94/257 (36%), Gaps = 39/257 (15%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++I + A R ++S V LV V+K + L G +F EN+
Sbjct: 20 LLQNYRRVLERIRAAEQDHSAVRTEESAPVQLVTVTKFFPASDAAALLDGGVSLFGENRD 79
Query: 59 QEAKKK------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
QEA K + R+ FIG LQ+NK +V + +V R A L+
Sbjct: 80 QEASAKARELAAYCAQREVQPPHWAFIGQLQTNKAKSVVKYASSVHSVDRPSLADALAKA 139
Query: 113 MIKQSRFLPV------------------------YIQVNTGYEIQKSGIMPNQTKDFVIL 148
Q E + G ++ + V
Sbjct: 140 YANQLSRFEAGEAPAPAAAEQGALTCLVQVSLAEVATAGHAAEGARGGTSASELLELVER 199
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIAS 203
L G+M + P NP F L +A + T++S GM+ D E A+
Sbjct: 200 IENHEHLRCGGVMAVAPLGMNPDAAFEKLYGLASLVREQVPHATEISAGMSGDLEAAVRW 259
Query: 204 GATSVRIGSGIFGERPC 220
G+T VR+GS I G+RP
Sbjct: 260 GSTCVRVGSDIMGKRPA 276
>gi|52548657|gb|AAU82506.1| conserved hypothetical protein [uncultured archaeon GZfos18B6]
Length = 224
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 16/222 (7%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ + ++ V L A +K +++ A+ G I EN +QEA++ +
Sbjct: 5 EQIRGNVKRLLAEL---PKEVVLEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEV 61
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ + + FIG LQ NKV + V LFD+IET+ A ++ K + +P+ I+VN
Sbjct: 62 IGRVVN--WHFIGHLQRNKVKKAVELFDLIETIDSFPIAEEINRVSSKIGKIMPILIEVN 119
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIAREC 184
+G E QK G+ P ++ V+ + + GLM + P + + EI
Sbjct: 120 SGREPQKFGVFPEDVEELVVKISALASVKIVGLMTMGPYEEDIEKSRSYFRAAKEIFERI 179
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ + +AI GA +R+G+GIFG R
Sbjct: 180 KKSGIPSVDMRFLSMGMSDSYNIAIEEGANIIRVGTGIFGPR 221
>gi|283953914|ref|ZP_06371443.1| hypothetical protein C414_000040016 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794519|gb|EFC33259.1| hypothetical protein C414_000040016 [Campylobacter jejuni subsp.
jejuni 414]
Length = 210
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
++ L+A SK VD+ + + G V F EN++Q +K K+ +++ FIG+LQS
Sbjct: 11 KNIRLIAASKYVDASMVEKLFNQGVVEFGENQVQALAQKKENLNEKKLNIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK++ ++ ++ + + L +++N+ E KSG+ PNQ +
Sbjct: 71 NKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLDPNQAIE 128
Query: 145 FVILCRQ-KYQLNVEGLMCIPPAMGN------PKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ ++ LN+ G+M I + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|270308072|ref|YP_003330130.1| alanine racemase domain protein [Dehalococcoides sp. VS]
gi|270153964|gb|ACZ61802.1| alanine racemase domain protein [Dehalococcoides sp. VS]
Length = 220
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L A K +I A+ G I N L EA++ + + FIG LQS
Sbjct: 17 PPDVVLEAAVKKRQPSEILAAIDAGIKIIGHNYLTEAEETYP--LIGDKAEWHFIGKLQS 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK +IV F V+ETV + AS L+ + + L V+I++N+G E QKSG++P +T +
Sbjct: 75 NKCKKIVRRFSVVETVDSIEIASELNRRAAEIDKILSVFIEINSGREKQKSGVLPEETVE 134
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-------------LSM 191
L + GLM + PA+ P+ + + K + LSM
Sbjct: 135 LAKRISCLSNLKLTGLMTMGPALEAPEELRTIFRLT--KIKFDEIASMGLPNTELQFLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERP 219
GM+ +++A+ GA VR+G+ IFG RP
Sbjct: 193 GMSGSYKVAVQEGANLVRLGTRIFGPRP 220
>gi|145248690|ref|XP_001400684.1| alanine racemase family protein [Aspergillus niger CBS 513.88]
gi|134081351|emb|CAK41854.1| unnamed protein product [Aspergillus niger]
Length = 271
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 37/244 (15%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL---SCGQVIFAENKLQEAKKKWIPL 68
+I + + + LVAVSK+ + I Q F EN LQE ++
Sbjct: 25 ARINTATTSSPKSTP-PRLVAVSKLKPASDILTLHTNPPAHQTHFGENYLQELQE--KAR 81
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFD------------VIETVSREKTASLLSLEMIKQ 116
++ FIG LQSNK + + + ++
Sbjct: 82 LLPTTIKWHFIGGLQSNKCVTLARDTPALWAVESVDSTKKASLLDKGWGERSAEVKETNH 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCI-------PPAM 167
L V++QVNT E KSG+ P + + + +L ++G+M I
Sbjct: 142 EERLRVFVQVNTSGEENKSGVEPGDGALELCRFIRDKCPRLRLQGVMTIGAIARSKATTP 201
Query: 168 GNPKPHFYLLSEIA----RECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
N F L E +E L +LSMGM+ DFE AIA G+ VR+G+ IFG+
Sbjct: 202 ENENEDFVCLRETRDRVVKELGLLGEEAALELSMGMSEDFEGAIALGSDEVRVGTTIFGD 261
Query: 218 RPCQ 221
RP +
Sbjct: 262 RPPK 265
>gi|296129029|ref|YP_003636279.1| alanine racemase domain protein [Cellulomonas flavigena DSM 20109]
gi|296020844|gb|ADG74080.1| alanine racemase domain protein [Cellulomonas flavigena DSM 20109]
Length = 255
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 22/242 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL--SCGQVIFAENKLQ 59
+ +L ++++ + A R D V ++ SK +D +R AL
Sbjct: 12 DVARRLAQVQERVAAACAAAARRPDEVRVLLASKTMDVATVRAALLADTAARTAGATHAP 71
Query: 60 --------EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
+ P + + IG LQSNKV+ + +E+V+ + A LS
Sbjct: 72 VLLGENRVQELVTKAPALADLEPTWHVIGPLQSNKVNAALRWAAAVESVADDALARRLSG 131
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ + L V++Q N E K G+ P+ D + L + GLM + + +
Sbjct: 132 RAQGREQPLDVWVQANVSGEPTKHGVAPDAAADLAVRVAALPGLRLAGLMTVGARSDDER 191
Query: 172 ---PHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L + E LSMGM+ D E A+A GAT VRIG+ +FG R
Sbjct: 192 VVRAGFARLRAVRDEVVASGEPGTEHAHGLSMGMSGDLEAAVAEGATVVRIGTAVFGLRA 251
Query: 220 CQ 221
Sbjct: 252 TP 253
>gi|313622997|gb|EFR93291.1| protein YlmE [Listeria innocua FSL J1-023]
Length = 199
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
VAV+K +D I G F EN+ K L + D+ +IGSLQ+ KV ++
Sbjct: 1 VAVTKTIDVAGITELYDLGIRHFGENRADVFLDKTRELADKDDICWHYIGSLQTRKVKDV 60
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ D + ++ R A + + ++ + ++QVN E K G + F+
Sbjct: 61 LPEIDYLHSLDRSSLAKEIEK---RATKPIKCFLQVNISGEESKHGFSKEEALSFLQEAD 117
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----------RECKLTKLSMGMTRDFEL 199
+ + GLM + P + K ++ E+ + T+LSMGMT D+ +
Sbjct: 118 FN-FIEIVGLMTMAPITNSDKELHHVFHELKQLQQEIHALQLKNIPCTELSMGMTNDYGI 176
Query: 200 AIASGATSVRIGSGI 214
AI GAT +R+G +
Sbjct: 177 AITEGATFIRVGRAL 191
>gi|302419101|ref|XP_003007381.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261353032|gb|EEY15460.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 260
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 69/247 (27%), Positives = 100/247 (40%), Gaps = 36/247 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L +L+ ++ ++A RP V LVAVSK+ + I V F EN QE
Sbjct: 17 LTTQLEAVTARLTSAAK--GRP---VRLVAVSKLKPANDILALHRDASVVHFGENYAQEL 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE--------KTASLLSLEM 113
+K ++ FIG LQS ++ + ++ S + A L
Sbjct: 72 IQKVD--LLPSTLRWHFIGGLQSGHAKKLAHIPNLFCVSSVDSLKKARLLNNARADLLAH 129
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ L V++QVNT E KSG P + + LN+ GLM I +
Sbjct: 130 GEDVDKLNVHVQVNTSGEEAKSGAAPGDETVALCRAIEDECPALNLLGLMTIGAIARSKA 189
Query: 172 PHFYLLSEIARECKLTK---L-------------SMGMTRDFELAIASGATSVRIGSGIF 215
+E L + L SMGM+ DFE A+A G+ VRIGS IF
Sbjct: 190 TTAETENE--DFLALKEQRDLVRKELGLERELELSMGMSNDFEGAVAMGSDEVRIGSTIF 247
Query: 216 GERPCQT 222
GER ++
Sbjct: 248 GERGPKS 254
>gi|289614726|emb|CBI58503.1| unnamed protein product [Sordaria macrospora]
Length = 260
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 71/245 (28%), Positives = 98/245 (40%), Gaps = 39/245 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV---IFAENKLQ 59
L ++LQ +++I A RP V LVAVSK+ + I QV F EN Q
Sbjct: 16 LVSQLQGVQERILAVAK--GRP---VRLVAVSKLKPANDILALHQAPQVKQVHFGENYAQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET------------VSREKTAS 107
E ++K ++ FIG LQS + + ++
Sbjct: 71 ELQQKAE--LLPRTIKWHFIGGLQSTHCKPLAKISNLFAVSSLDSLKKAQTLNRVRGELI 128
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCI-- 163
S Q L V++QVNT E KSG P Q + + L + GLM I
Sbjct: 129 ASSSTPENQIEKLNVHVQVNTSGEESKSGCSPGQETVDLCKAIVNECPHLKLLGLMTIGA 188
Query: 164 -----PPAMGNPKPHFYLLSEIA----RECKLTK----LSMGMTRDFELAIASGATSVRI 210
N F +L E +E L + LSMGM+ DFE AI G++ VR+
Sbjct: 189 IARSKATTPENENEDFVVLREQRELVEKELGLEEGSLELSMGMSEDFEGAIVMGSSEVRV 248
Query: 211 GSGIF 215
GS IF
Sbjct: 249 GSTIF 253
>gi|153951807|ref|YP_001398337.1| hypothetical protein JJD26997_1287 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939253|gb|ABS43994.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. doylei 269.97]
Length = 210
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
++ LVA SK VD+ I G V F EN++Q +K K+ +++ FIG+LQS
Sbjct: 11 KNIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK++ ++ ++ + + L +++N+ E KSG+ PNQ +
Sbjct: 71 NKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLNPNQAIE 128
Query: 145 FVILCRQ-KYQLNVEGLMCIPPAMGN------PKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ ++ LN+ G+M I + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSQDRESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|154338034|ref|XP_001565243.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062290|emb|CAM36679.1| putative alanine racemase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 245
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 23/235 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + R V+L+ V K + + GQ +F EN +QE +
Sbjct: 15 LALNYKAVCDTVAQ--ESGNRR---VTLITVGKTKSPACLLSLYNLGQRVFGENYVQELE 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK-----TASLLSLEMIKQS 117
+K D FIG LQSNKV E++ + + + +
Sbjct: 70 EKARE--LPGDTVWHFIGHLQSNKVRELLEGVPNLHVIQTIDSDKLANKVNEGCKKYRSG 127
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIP-PAMGNPKPHF 174
R L VYIQVNT E KSG P + + + L ++GLM I P + +F
Sbjct: 128 RSLEVYIQVNTSGEETKSGTEPGEATVALAKYIVGECPLLQLKGLMTIGMPDYTSRPENF 187
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L++ E + +LSMGM+ D+ AI G+T+VR+GS IFG+R
Sbjct: 188 ECLTKCREEVAQAVQVAPEDLELSMGMSGDYVNAIRMGSTTVRVGSSIFGQRYYP 242
>gi|52550023|gb|AAU83872.1| conserved hypothetical protein [uncultured archaeon GZfos34H10]
Length = 224
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 16/222 (7%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ + ++ V L A +K +++ A+ G I EN +QEA++ +
Sbjct: 5 EQIRGNVKRLLAEL---PKDVVLEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEV 61
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ + + FIG LQ NKV + V LFD+IET+ A ++ K + +P+ I++N
Sbjct: 62 IGRVVN--WHFIGHLQRNKVKKAVELFDLIETIDSFSIAEEVNRVSSKIGKIMPILIEIN 119
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIAREC 184
+G E QK G+ P + V+ + + GLM + P + + EI
Sbjct: 120 SGREPQKFGVFPEYVAELVVKISALASVKIVGLMTMGPYEEDIEKSRLYFRAAKEIFERI 179
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ + +AI GA VR+G+GIFG R
Sbjct: 180 KKSGIPSVDMRFLSMGMSDSYNIAIEEGANIVRVGTGIFGPR 221
>gi|328955369|ref|YP_004372702.1| alanine racemase domain protein [Coriobacterium glomerans PW2]
gi|328455693|gb|AEB06887.1| alanine racemase domain protein [Coriobacterium glomerans PW2]
Length = 245
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 18/231 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L + +++ + + RP+ + L+AVSK VD K+ A+ G +F EN+ QE
Sbjct: 8 LRERRYAILSRMDRALQRSGRPRKAAQLMAVSKTVDPVKVEAAIRVGYRVFGENRPQELV 67
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT------ASLLSLEM 113
P ++ V+ IG+LQ NK++ ++ I+++S E +
Sbjct: 68 RKMNALAPRQELPQVRFDMIGNLQKNKINAVLGRAAYIQSISSESIARAVSVRVEREIAA 127
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--K 171
PV ++VN E K+G P + + + R + + G+M + P +
Sbjct: 128 RHMIEPQPVLLEVNVSGETSKAGFAPEELRASMDRLRSLCGIRIAGMMTMAPRAQPTLAR 187
Query: 172 PHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E+ E L+ LS GM+ DFE+A+ GAT +R+G +F
Sbjct: 188 ATFRGLRELRDELVKAYDGLDLSVLSCGMSEDFEIALEEGATLIRLGRVVF 238
>gi|184201123|ref|YP_001855330.1| hypothetical protein KRH_14770 [Kocuria rhizophila DC2201]
gi|183581353|dbj|BAG29824.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 297
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 40/256 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS------VSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L +L +++I ++A A+RP+D SLV V+K ++ + G EN
Sbjct: 42 LAQRLSAVRRRILDAA--AQRPEDRSHGGELPSLVVVTKFFPAQDVLRLRELGVRAVGEN 99
Query: 57 KLQEAKKKWIP--------LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
K QEA K F+G LQSNK +V + +V R +
Sbjct: 100 KDQEAGPKAAEVAEELALREPSVTPPVWHFVGQLQSNKAKHVVRYASWVHSVDRPSLVTA 159
Query: 109 LSLEMIKQSR-----------------FLPVYIQVNTGYEIQ--KSGIMPNQTKDFVILC 149
L + V + V+ Q + G P+ +
Sbjct: 160 LGKAVRNHRDAVAAGDAAPGPCATRDLTCLVQVDVDPHAAEQGGRGGAHPDAVAELADAI 219
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASG 204
L++ G+M + P P+ F L EI++ + +S GM+ D E A+ +G
Sbjct: 220 AGTEGLSLGGVMTVAPRGARPEEAFERLWEISQRLQRRHPDARAVSAGMSGDLEAAVGAG 279
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIGS + G RP
Sbjct: 280 ATHVRIGSDVLGARPA 295
>gi|32490829|ref|NP_871083.1| hypothetical protein WGLp080 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166035|dbj|BAC24226.1| yggS [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 233
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 12/225 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + KI N + R +++L+ SK +I+ A Q F EN +QEA
Sbjct: 5 IKKNLEKIQNKIYNLSKYYNRNPKNINLLLASKSRSVYEIKFANEYNQNNFGENYVQEAI 64
Query: 63 K---KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + + ++ IG +QSNK I FD T++ K + L+ + +
Sbjct: 65 KKIVWFKKNHPKNNLIWHMIGQIQSNKSKLIAKYFDWCHTINNIKISKKLNNYRKIKKKP 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E + G + + Q L ++G+M P + Y +
Sbjct: 125 LKVLIQININEEKNRYGSSLKEFDNIYEFIFQKCNNLMLKGIMIFPIITDDLNKKIYNFN 184
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + LS G T D + AI G+T +RIG GIF
Sbjct: 185 IIIDKFNTLKNKNSNFNVLSFGTTSDIDHAIKIGSTLLRIGKGIF 229
>gi|154175245|ref|YP_001408198.1| hypothetical protein CCV52592_1134 [Campylobacter curvus 525.92]
gi|112802459|gb|EAT99803.1| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 211
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 16/216 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ +I + ++V+LVAVSK V S +++ + GQ +F EN++QE KK
Sbjct: 3 NLQNLMDEINSL-------NENVTLVAVSKNVSSTEVKALYAQGQRVFGENRVQELAKKC 55
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + D++ IG LQ+NK+++++SL + + S + + L +Q
Sbjct: 56 SELGEFTDIKWHMIGRLQNNKINQLLSLRPALW--QSCDSFERASEVNKRLNFTLDTLLQ 113
Query: 126 VNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N+ E K G+ N ++ ++ + Q +N++G+M I + + +I
Sbjct: 114 INSANEDSKQGVSYENASEIYMRIKEQCKNINLKGVMSIGAHSDDEREVQKSFELSYKIF 173
Query: 182 REC---KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
SMGM+ DF LAI G+ +R+GS +
Sbjct: 174 ENLRAHGAQICSMGMSSDFRLAIKCGSNMIRLGSLL 209
>gi|224541076|ref|ZP_03681615.1| hypothetical protein CATMIT_00227 [Catenibacterium mitsuokai DSM
15897]
gi|224526000|gb|EEF95105.1| hypothetical protein CATMIT_00227 [Catenibacterium mitsuokai DSM
15897]
Length = 215
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 11/196 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
LVA +K +D K++ CG +I+ ENK+Q+ KK+ + FIG+LQ+NKV
Sbjct: 20 KLVAATKYIDEKEVEKLEECGVMIYGENKVQDFLKKYEDYHGK--GVWHFIGTLQTNKVK 77
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I+ +I +V+ + + + K + + +QVN E K G + + +
Sbjct: 78 YIIDKVQMIHSVANYRLIDEIEKQAAKHDLVMDILLQVNIAKEESKHGFNEEEMNEVMDY 137
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYL---------LSEIARECKLTKLSMGMTRDFEL 199
+ K LN GLM + P + + Y L E +LT+LSMGMT DF +
Sbjct: 138 LKDKPHLNPRGLMMMAPNIEVEETRQYFKATKDLLTKLQESYPNYQLTELSMGMTHDFPI 197
Query: 200 AIASGATSVRIGSGIF 215
A+A G+T VR+G +F
Sbjct: 198 AVAEGSTMVRLGHALF 213
>gi|183983178|ref|YP_001851469.1| hypothetical protein MMAR_3188 [Mycobacterium marinum M]
gi|183176504|gb|ACC41614.1| conserved protein [Mycobacterium marinum M]
Length = 261
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L V + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAVVRSRLAAAAEAAGRKVSEIELLPITKFFPATDVAILARLGCRAVGESRDQEAS 77
Query: 63 KKWIP---------LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TAS 107
K +Q +G +Q NKV + + ++ + A
Sbjct: 78 AKVAELARLFSAPIRSGSRGIQWHMVGQIQRNKVRSLANWAHTAHSIDTPQLVTALDRAI 137
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSG---IMPNQTKDFVILCRQKYQLNVEGLMCIP 164
++ ++ L VY+QV+ ++ + G P L + GLM +P
Sbjct: 138 TTAIADRRRGNPLRVYVQVSLDGDVSRGGVDMTDPGAVDRICAQVSDAQSLELIGLMGVP 197
Query: 165 PAMGNPKPHFYLLS-EIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P + + F L E +R + +LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PRDWDQEKAFERLQSEHSRVLESFPTAVRLSAGMSDDLEIAVKHGSTCVRVGTALLGSR 256
>gi|283458369|ref|YP_003362992.1| hypothetical protein RMDY18_13400 [Rothia mucilaginosa DY-18]
gi|283134407|dbj|BAI65172.1| predicted enzyme with a TIM-barrel fold [Rothia mucilaginosa DY-18]
Length = 278
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/257 (23%), Positives = 91/257 (35%), Gaps = 39/257 (15%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRP--KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++I + A R V LV V+K + L G +F EN+
Sbjct: 21 LLQNYRRVLERIRAAEQDHSAVRTEVSAPVQLVTVTKFFPASDAAALLDGGVTLFGENRD 80
Query: 59 QEAKKK------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
QEA K + R+ FIG LQ+NK +V + +V R A L+
Sbjct: 81 QEASAKARELAAYCAQREVQPPHWAFIGQLQTNKAKSVVKYASSVHSVDRPSLADALAKA 140
Query: 113 MIKQSRFLPV------------------------YIQVNTGYEIQKSGIMPNQTKDFVIL 148
Q E + G ++ + V
Sbjct: 141 YANQLSRFEAGEAPAPAAAEHGALTCLVQVSLAEVATAGHAAEGARGGTSASELLELVER 200
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIAS 203
L G+M + P NP F L +A + T++S GM+ D E A+
Sbjct: 201 IENHEHLRCGGVMAVAPLGMNPDEAFEKLYGLASLVREQVPHATEISAGMSGDLEAAVRW 260
Query: 204 GATSVRIGSGIFGERPC 220
G+T VR+GS I G+RP
Sbjct: 261 GSTCVRVGSDIMGKRPA 277
>gi|78777433|ref|YP_393748.1| hypothetical protein Suden_1235 [Sulfurimonas denitrificans DSM
1251]
gi|78497973|gb|ABB44513.1| Protein of unknown function UPF0001 [Sulfurimonas denitrificans DSM
1251]
Length = 224
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 8/215 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +++E + + K V +VA+SK ++I+ GQ F ENK Q+ + K
Sbjct: 10 IDDVIRRVEFARVRFN-DKHIVKIVAISKYSTCQEIKALYEIGQRAFGENKAQDLRVKSS 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + ++ F+G+LQ NK++ ++ + + + + A + ++ + L +Q
Sbjct: 69 ELDEL-PLEWHFVGNLQKNKINNLLDINPSLFQALDSLELAHEIQKKLHVRDVKLEALLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLLSE---IA 181
+N+ E K G+MP ++ + + G+M I + K I
Sbjct: 128 INSAKEESKHGVMPEDAVQIYNQIKKECPNITLRGVMSIGAHTDDKKIIKKSFDTTYGIY 187
Query: 182 REC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E SMGM+ DFELAI G+ +R+GS +F
Sbjct: 188 KELEDADICSMGMSGDFELAIECGSNMIRLGSIMF 222
>gi|57167731|ref|ZP_00366871.1| conserved hypothetical protein TIGR00044 [Campylobacter coli
RM2228]
gi|305433236|ref|ZP_07402392.1| YggS family pyridoxal phosphate enzyme [Campylobacter coli JV20]
gi|57020853|gb|EAL57517.1| conserved hypothetical protein TIGR00044 [Campylobacter coli
RM2228]
gi|304443937|gb|EFM36594.1| YggS family pyridoxal phosphate enzyme [Campylobacter coli JV20]
Length = 210
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQS 84
++ LVA SK VD+ I + G F EN++Q +K L K+ +++ FIG+LQS
Sbjct: 11 KNIRLVAASKYVDANIIEKLFTQGITEFGENQVQALVQKKEILDKKDLNIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK++ ++ ++ + + + L +++N+ E+ KSG+ P+Q +
Sbjct: 71 NKINLLIKQKPILW--HSCNGLKIAKAMDKRLNYKLDTLLEINSANELSKSGLNPDQAIE 128
Query: 145 FVILCRQ-KYQLNVEGLMCIPPAMGNPKPHFYLL------SEIARECKLTKLSMGMTRDF 197
+ ++ LN+ G+M I + + E ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSEDQREIEKSFETTYKIYEKLQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNMVRLGSILF 206
>gi|108760438|ref|YP_629997.1| hypothetical protein MXAN_1747 [Myxococcus xanthus DK 1622]
gi|108464318|gb|ABF89503.1| conserved hypothetical protein TIGR00044 [Myxococcus xanthus DK
1622]
Length = 212
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
+IR+A + G ENK+QEA K + D++ IG LQ+NK +
Sbjct: 2 PEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASEF 61
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
+ + + A L + + R L V +QVNT E K G+ P++ F L V
Sbjct: 62 QALDSLRVAEALDRRLQVEGRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLRV 121
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARE-----------CKLTKLSMGMTRDFELAIASGAT 206
GLM + +P + + + +LSMGM+ DFE A+ GAT
Sbjct: 122 RGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVTMNELSMGMSGDFEWAVEEGAT 181
Query: 207 SVRIGSGIFGER 218
VR+G IFG R
Sbjct: 182 IVRVGQAIFGPR 193
>gi|118474783|ref|YP_892034.1| hypothetical protein CFF8240_0859 [Campylobacter fetus subsp. fetus
82-40]
gi|118414009|gb|ABK82429.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
82-40]
Length = 205
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 21/216 (9%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L KI S L+AVSK V ++ + GQ+ F EN++QE K+K
Sbjct: 2 RLDEILSKI-----------GSTKLIAVSKNVTENEVLELYNQGQIDFGENRVQELKRK- 49
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ K+ ++ FIG LQ+NK++ +++L + ++ S+ + LP +Q
Sbjct: 50 KEILKDLNLNWHFIGRLQANKINHLLALHPNLW--QSCESFSMAEAVDKRLDYILPTLLQ 107
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------S 178
+N+ +E K G+ PN ++F+ + + LN+ G+M I + K
Sbjct: 108 INSAHEESKQGVDPNAACEEFLRIKQSCKNLNLIGVMSIGAHSDDIKEIQKSFESTYKIY 167
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
E +E SMGM+ D+ELAI G+ +R+G+ +
Sbjct: 168 ENLQEHGAKICSMGMSSDYELAIKCGSNMIRLGTIL 203
>gi|167465829|ref|ZP_02330918.1| hypothetical cytosolic protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 268
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 60/253 (23%), Positives = 94/253 (37%), Gaps = 39/253 (15%)
Query: 6 KLQVFKQKIENSAILAK--RPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ +Q +++++ R S L V+K S + S G EN+ QEA
Sbjct: 14 NLEAAQQAVKSASEDFSQVRDPQSPLPRLTVVTKFFPSSDVETLYSLGVRHVGENRDQEA 73
Query: 62 KKKWIPLRKEWDV----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L + D Q +IG LQ+NK +V + ++ R A L+ Q
Sbjct: 74 SAKATELAEITDAQDPLQWSYIGQLQTNKAKSVVKYVAEVHSIDRISLAQALAKAYSLQV 133
Query: 118 RFL----------------PVYIQVNTGYEIQKSGIMPNQTKD----------FVILCRQ 151
+QV+ + + K +
Sbjct: 134 TRWESEEAPAPFAAVRGGLKCLVQVSLEDHDGSTAGHAAEGKRGGAKLDDLLKIADMLNS 193
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGAT 206
L G+M + P NP F L I+++ + ++S GM+ D E AI G+T
Sbjct: 194 SAGLECSGVMAVAPLGMNPDAAFEKLYNISQKLREHHPSAQEISAGMSGDLEAAIRWGST 253
Query: 207 SVRIGSGIFGERP 219
+VRIGS I G RP
Sbjct: 254 NVRIGSKIMGARP 266
>gi|118470091|ref|YP_888497.1| hypothetical protein MSMEG_4220 [Mycobacterium smegmatis str. MC2
155]
gi|118171378|gb|ABK72274.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 291
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 17/218 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---KEWDVQ 75
A R + L+ V+K I + G + F E++ QEA K +R + ++
Sbjct: 42 ESAGRNVGEIELLPVTKFFPGSDIVILNQLGCLSFGESREQEAANKIAEVRAELPDAPIR 101
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE------MIKQSRFLPVYIQVNTG 129
IG +Q NK + +V + + L +S L VY+Q++
Sbjct: 102 WHMIGRIQRNKARAVAGWAYAAHSVDNARLIAALDRGAADALGRGVRSEPLRVYLQISLD 161
Query: 130 YEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ ++ G+ P+ + L GLM IPP + F L+ +
Sbjct: 162 GDAERGGVDIGDPDLVDELCAAIDGADGLTFTGLMAIPPLGADADEAFARLAAERDRVQK 221
Query: 187 T-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++S GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 222 AYPQRLEMSAGMSNDLESAVKHGSTCVRVGTALMGPRP 259
>gi|238795052|ref|ZP_04638645.1| alanine racemase [Yersinia intermedia ATCC 29909]
gi|238725600|gb|EEQ17161.1| alanine racemase [Yersinia intermedia ATCC 29909]
Length = 192
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 40 KKIRVALSCGQVIFAENKLQ---EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
I A++ GQ F EN +Q + + D++ FIG LQSNK + F
Sbjct: 2 SAIEEAIAAGQYAFGENYVQEGVDKIHYFANNAHSTDLEWHFIGPLQSNKSRLVAENFAW 61
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
TV R K A LS + L + IQVN E KSGI + + L+
Sbjct: 62 CHTVDRLKIAQRLSTQRPAAMAALNILIQVNISDEQSKSGIALTELPALAASISELPNLS 121
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSV 208
+ GLM IP + + + ++ + ++ LSMGMT D AI++G+T V
Sbjct: 122 LRGLMAIPAPESDYQRQLVVFEQMNQAFLTLKASYPQIDTLSMGMTDDMAAAISAGSTLV 181
Query: 209 RIGSGIFGER 218
RIG+ IFG R
Sbjct: 182 RIGTAIFGTR 191
>gi|310796209|gb|EFQ31670.1| YggS family pyridoxal phosphate enzyme [Glomerella graminicola
M1.001]
Length = 268
Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/250 (22%), Positives = 93/250 (37%), Gaps = 35/250 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++LQ ++++ +A+ A R V LVAVSK+ + I + +
Sbjct: 18 LISQLQAVQERV--AAVAAGRN---VRLVAVSKLKPANDILALHQATPPQVHFGENYAQE 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP- 121
+Q FIG LQS ++ + ++ S + L +
Sbjct: 73 LGQKAEMLPRSIQWHFIGGLQSTHAKKLAKIPNLFCVSSVDTLKKAQLLNAARAELMSSP 132
Query: 122 -------------VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPA 166
V++QVNT E KSG+ P + + + GLM I
Sbjct: 133 PDDGGAAPVEPLGVHVQVNTSGEESKSGVAPGPETVALCRAVETECPALRLLGLMTIGAI 192
Query: 167 MGNPKPHFYLLSEIARECKLT-KL-------------SMGMTRDFELAIASGATSVRIGS 212
+ +E + +L SMGM+ DFE A+ G+ VR+GS
Sbjct: 193 ARSKATTAENENEDFLCLRAQRELVAGELGLERELELSMGMSEDFEGAVRLGSGEVRVGS 252
Query: 213 GIFGERPCQT 222
IFGER ++
Sbjct: 253 TIFGERGPKS 262
>gi|328881783|emb|CCA55022.1| Hypothetical protein YggS [Streptomyces venezuelae ATCC 10712]
Length = 239
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERIAAACAAAGRAREEVTLIVVTKTYPASDVRILHGLGVRNVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ F+G LQ+NKV +V DV+++V R K S LS K+ R L
Sbjct: 68 PKAAACADL-DLTWHFVGQLQTNKVRSVVGYADVVQSVDRLKLVSSLSAAAEKEGRELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+QV +G + G+ P+ ++ L ++GLM + P G + F
Sbjct: 127 LLQVALDAESGERGDRGGVAPDGIEELAAAVDAAPGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMDLSTALRATRPAANMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|314988183|gb|EFT32274.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA2]
gi|314989986|gb|EFT34077.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA3]
gi|315084372|gb|EFT56348.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL027PA2]
gi|328753527|gb|EGF67143.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL020PA1]
Length = 198
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQHALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|222823754|ref|YP_002575328.1| hypothetical protein Cla_0749 [Campylobacter lari RM2100]
gi|222538976|gb|ACM64077.1| conserved hypothetical protein [Campylobacter lari RM2100]
Length = 205
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 19/216 (8%)
Query: 6 KLQVFKQK-IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ +K I+ +V L+A SK V ++IR G F EN++Q K
Sbjct: 2 NLESIFEKTIKQ----------NVRLIAASKYVQDEQIRELFKQGIFEFGENQVQALALK 51
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
++ +++ FIG+LQSNK++ ++ V+ + + L +
Sbjct: 52 -KEKLQDLEIKWHFIGNLQSNKINLLIKQKPVLW--QSCNGIKIAKAVDKRLEYKLDTLL 108
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP----KPHFYLLSE 179
++NT E KSGI N+ + + ++ LN+ G+MCI + + E
Sbjct: 109 EINTANENSKSGIEQNKAIEEYLQIQEECENLNLVGIMCIGAMNEEKVQEGFEQTFKIYE 168
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ SMGM+ DFELAI G+ VR+GS +F
Sbjct: 169 NLQKHGAKICSMGMSGDFELAIKCGSNMVRLGSILF 204
>gi|218513523|ref|ZP_03510363.1| hypothetical protein Retl8_07286 [Rhizobium etli 8C-3]
Length = 131
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 76/125 (60%), Positives = 92/125 (73%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
FDVIETV REK A L+ EM +Q R +Y+QVNTG E QK+GI P+ T FV LCR +
Sbjct: 7 FDVIETVDREKIARALAEEMKRQDRTPRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRDEL 66
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSG 213
L +EGLMCIPPA NP PHF LL+++A +C + KLSMGM+ D+E AIA GATSVR+GS
Sbjct: 67 GLAIEGLMCIPPAEENPGPHFALLAKLASKCGVEKLSMGMSGDYETAIAFGATSVRVGSA 126
Query: 214 IFGER 218
IFG R
Sbjct: 127 IFGAR 131
>gi|206602124|gb|EDZ38606.1| Conserved protein of unknown function [Leptospirillum sp. Group II
'5-way CG']
Length = 230
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 7/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ K++I A + +V V+K ++ G AEN+ +
Sbjct: 9 RDRFDRLKKEIALKARSNGYS-HEIRIVGVTKGRSDEEAMALFEAGVDHLAENRWEFLSG 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ + FIG+LQ + + ++TV R +L+ + +
Sbjct: 68 RVELFQSGRFPLWHFIGALQRRSLRQNYRPVFSVDTVDRPSVLPVLARLAEQGKTRQNIL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---I 180
++++ +SG+ + + C + +L V G + + P + + +
Sbjct: 128 VELDLTGLPGRSGVREERLDSLLEECTRWPELVVRGFLVMGPPPEDRTLSRQVFRRGRAL 187
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGM+ D+ A+A G+T VRIG F
Sbjct: 188 FERFFSGNDHVLSMGMSEDYPEAVAEGSTEVRIGRYFF 225
>gi|239931813|ref|ZP_04688766.1| hypothetical protein SghaA1_26572 [Streptomyces ghanaensis ATCC
14672]
gi|291440182|ref|ZP_06579572.1| alanine racemase domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
gi|291343077|gb|EFE70033.1| alanine racemase domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
Length = 239
Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 IAANLARVEERIAAACAAAGRARDEVTLIVVTKTFPASDVRLLSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V V+ +V R + + LS E ++ R +
Sbjct: 68 PKAAQCADL-PLTWHFVGQLQTNKVRSVVGYAGVVHSVDRARLVTALSREAVRSGREVGC 126
Query: 123 YIQVN----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
+QV G ++ G+ P + L L ++GLM + P G + F
Sbjct: 127 LVQVALDAGEGGRGERGGVAPGGVAELAALVAGAEGLRLDGLMTVAPLTGEYAGRQQAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 ERLVDLSTALRKAHPTANMVSAGMSTDLEQAVAAGATHVRVGSAVLGVRP 236
>gi|313816052|gb|EFS53766.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL059PA1]
gi|315098477|gb|EFT70453.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL059PA2]
Length = 198
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NKV + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIGGLQTNKVKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|73669788|ref|YP_305803.1| hypothetical protein Mbar_A2299 [Methanosarcina barkeri str.
Fusaro]
gi|72396950|gb|AAZ71223.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 214
Score = 111 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 13/201 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+LVA K +I A+ G N Q+ K + +++ FIG+LQ
Sbjct: 14 PPDVTLVAAVKYASKIQIDEAIKVGVTDIGFNHYQQMKD--LAPYYPPEIKTHFIGTLQL 71
Query: 85 NKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK ++V+ +IE+V + A ++ + R + IQV T E + +G+ P
Sbjct: 72 NKAKKVVNLNPYLIESVDSYELAEKINNAAKENKRIQKILIQVKTD-EKKHTGLEPGDLL 130
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMT 194
+ L+ EGLM IPP +P+ E+ + L LSMGMT
Sbjct: 131 KLLDQISTLEYLSFEGLMTIPPKNEDPEDSRKYFKELKDLKDKAEKHLKKHLQYLSMGMT 190
Query: 195 RDFELAIASGATSVRIGSGIF 215
D+++AI GA+ VRIG IF
Sbjct: 191 DDYQIAIEEGASIVRIGRKIF 211
>gi|124515880|gb|EAY57389.1| conserved protein of unknown function [Leptospirillum rubarum]
Length = 230
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 7/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ K+ I A + +V V+K + + G AEN+ +
Sbjct: 9 RDRFDRLKRDIAVKARSNGFS-HEIRIVGVTKGRSDEDALALFTAGVDHLAENRWEFLSG 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ FIG+LQ + + ++TV R +L+ + +
Sbjct: 68 RADLCLSGRSPLWHFIGALQRRSLRQNYRPVYSVDTVDRPSVLPVLARLAEQAKVRQNIL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---I 180
++++ +SG+ + + C +L V+G + + P + + +
Sbjct: 128 VELDLTGLPGRSGVREDNLDSLLKECSGWPELEVKGFLVMGPPPEDRAFSRQVFRRGRAL 187
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ A+A G+T VRIG FGE
Sbjct: 188 FERFFSGNDHVLSMGMSEDYSEAVAEGSTEVRIGRYFFGE 227
>gi|313764511|gb|EFS35875.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL013PA1]
gi|313772106|gb|EFS38072.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL074PA1]
gi|313792198|gb|EFS40299.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA1]
gi|313801851|gb|EFS43085.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA2]
gi|313807460|gb|EFS45947.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA2]
gi|313809970|gb|EFS47691.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL083PA1]
gi|313812998|gb|EFS50712.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL025PA1]
gi|313818505|gb|EFS56219.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL046PA2]
gi|313820271|gb|EFS57985.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA1]
gi|313822920|gb|EFS60634.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA2]
gi|313825148|gb|EFS62862.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL063PA1]
gi|313827719|gb|EFS65433.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL063PA2]
gi|313830299|gb|EFS68013.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL007PA1]
gi|313833673|gb|EFS71387.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL056PA1]
gi|313838675|gb|EFS76389.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL086PA1]
gi|314915505|gb|EFS79336.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA4]
gi|314918210|gb|EFS82041.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA1]
gi|314920025|gb|EFS83856.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA3]
gi|314925158|gb|EFS88989.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA3]
gi|314932039|gb|EFS95870.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL067PA1]
gi|314955909|gb|EFT00309.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL027PA1]
gi|314958221|gb|EFT02324.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA1]
gi|314960058|gb|EFT04160.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA2]
gi|314962857|gb|EFT06957.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL082PA1]
gi|314967775|gb|EFT11874.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA1]
gi|314973304|gb|EFT17400.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL053PA1]
gi|314975982|gb|EFT20077.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL045PA1]
gi|314983999|gb|EFT28091.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA1]
gi|315078072|gb|EFT50123.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL053PA2]
gi|315080700|gb|EFT52676.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL078PA1]
gi|315085713|gb|EFT57689.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA3]
gi|315096219|gb|EFT68195.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL038PA1]
gi|315101163|gb|EFT73139.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL046PA1]
gi|315105439|gb|EFT77415.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL030PA1]
gi|315108384|gb|EFT80360.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL030PA2]
gi|327326131|gb|EGE67921.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL096PA2]
gi|327331994|gb|EGE73731.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL096PA3]
gi|327443196|gb|EGE89850.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL013PA2]
gi|327445981|gb|EGE92635.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL043PA2]
gi|327448039|gb|EGE94693.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL043PA1]
gi|327450839|gb|EGE97493.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA3]
gi|327453084|gb|EGE99738.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL092PA1]
gi|327453815|gb|EGF00470.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL083PA2]
gi|328754258|gb|EGF67874.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA1]
gi|328754491|gb|EGF68107.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL025PA2]
gi|328760647|gb|EGF74214.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL099PA1]
Length = 198
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|314978481|gb|EFT22575.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL072PA2]
gi|315088867|gb|EFT60843.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL072PA1]
Length = 198
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFNSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|303232631|ref|ZP_07319316.1| pyridoxal phosphate enzyme, YggS family [Atopobium vaginae
PB189-T1-4]
gi|302481117|gb|EFL44192.1| pyridoxal phosphate enzyme, YggS family [Atopobium vaginae
PB189-T1-4]
Length = 266
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 30/232 (12%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I A A R ++L AVSK + ++K+ AL G +F EN++Q ++K LR
Sbjct: 22 IAQVAGAAGRNPQDITLCAVSKTLPAEKLPCALRAGYRVFGENRVQVLQEKLDMLRTPAC 81
Query: 74 VQLR----------------------FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
+ IG+LQ NK+++++ I++++ A L+
Sbjct: 82 QSICAATSNAAAAGNPAGACAPVSFDMIGTLQKNKLNKLIGAARRIQSLADVDMARALNE 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GN 169
+ + V +++N E KSG + + + + L ++GLMC+ PA
Sbjct: 142 RCAVHNVRMHVLLELNISGEASKSGFSVPELMEHMSGFTELSHLVIDGLMCMAPAHARDE 201
Query: 170 PKPHFYLLSEIARECKLTK------LSMGMTRDFELAIASGATSVRIGSGIF 215
+ F L+ + + LS GM+ DF++AI G+T +R+G +F
Sbjct: 202 ARACFKELTRVQARLRADYNLSCSVLSCGMSDDFDIAIQEGSTLIRLGRILF 253
>gi|329940938|ref|ZP_08290218.1| hypothetical protein SGM_5710 [Streptomyces griseoaurantiacus M045]
gi|329300232|gb|EGG44130.1| hypothetical protein SGM_5710 [Streptomyces griseoaurantiacus M045]
Length = 239
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEDRIAAACAAAGRAREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV ++ ++++V R + LS E ++ R +
Sbjct: 68 PKAAACSDL-PLTWHFVGQLQTNKVRSVLGYASLVQSVDRARLVMALSREAVRTGREVGC 126
Query: 123 YIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAM-GNPKPHFYLL 177
+QV G P+ + L + L ++GLM + P
Sbjct: 127 LLQVALDAGESGRGERGGVGPDGVGELAALVEEAPGLRLDGLMTVAPLTGEYAGRQQAAF 186
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +S GM+RD E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTVLRKTHPAANMVSAGMSRDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|108800217|ref|YP_640414.1| hypothetical protein Mmcs_3251 [Mycobacterium sp. MCS]
gi|119869345|ref|YP_939297.1| alanine racemase domain-containing protein [Mycobacterium sp. KMS]
gi|108770636|gb|ABG09358.1| Protein of unknown function UPF0001 [Mycobacterium sp. MCS]
gi|119695434|gb|ABL92507.1| alanine racemase domain protein [Mycobacterium sp. KMS]
Length = 254
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 24/219 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIG 80
++L+ V+K + IR+ G FAE++ QEA KK V+ +G
Sbjct: 33 DVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEFAGDPVRWHMVG 92
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLE------MIKQSRFLPVYIQVNTGYEIQK 134
+Q NK + +V K + L ++ L VY+Q++ ++++
Sbjct: 93 RIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVER 152
Query: 135 SGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-----------SEI 180
G+ P L GLM IPP + + F L EI
Sbjct: 153 GGVDVDQPELIDQLCAAVDSAEALEFVGLMGIPPLGADAESAFARLQSEWRRVRQRRKEI 212
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R + +LS GM+ D E+A+ G+T VR+G+ + G RP
Sbjct: 213 GRGQRF-ELSAGMSGDLEMAVRHGSTCVRVGTALMGPRP 250
>gi|218680714|ref|ZP_03528611.1| hypothetical protein RetlC8_18359 [Rhizobium etli CIAT 894]
Length = 173
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 2 MELQERLDDVRSRIAAGERQAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 61
Query: 61 AKKKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW ++ D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 62 SQGKWPGLKAEQPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQGRT 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+YIQVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP
Sbjct: 122 TRLYIQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENP 172
>gi|225682299|gb|EEH20583.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226289680|gb|EEH45164.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 302
Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats.
Identities = 72/275 (26%), Positives = 103/275 (37%), Gaps = 58/275 (21%)
Query: 2 SLGNKLQVFKQKIENSAILAK--------RPKDS--VSLVAVSKMVDSKKIRVALSCGQV 51
+L L +I +++ A RP+ V LVAVSK+ + I++ S
Sbjct: 25 TLLANLSAVTARIASASAAANTSRTKTQSRPQTQRPVRLVAVSKLKPASDIQILHSHDPS 84
Query: 52 -IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV--------------------SEI 90
F EN LQE + ++ FIG LQSNK
Sbjct: 85 LHFGENYLQELLE--KSKILPCGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTEKKAS 142
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ E + + L V++QVNT E KSG+ P + R
Sbjct: 143 LLDRGWGERDVDVNEEGGEKGQSVNAGNRLRVFVQVNTSGEESKSGVKPAEAVSLCRFIR 202
Query: 151 -QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIARECKLTKL------------- 189
+ +L ++GLM I + N F L E + +L
Sbjct: 203 EKCPRLKLQGLMTIGAIARSKATTVENENEDFVCLRETRDMVE-KELELVADEGEGEAEG 261
Query: 190 ---SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 262 LELSMGMSEDFEGAIAMGSNQVRVGSTIFGVRPPK 296
>gi|184153776|ref|YP_001842117.1| hypothetical protein LAR_1121 [Lactobacillus reuteri JCM 1112]
gi|183225120|dbj|BAG25637.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
Length = 160
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ NKV I +I++V K + + E K R +P+ I+VN G E K G+
Sbjct: 1 MIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRIIPILIEVNVGEEESKFGV 60
Query: 138 MPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI----------ARECK 185
P Q + + GLM P +P+ + + + K
Sbjct: 61 KPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFRRLRELRDEMNNQNDQLK 120
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 121 LDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYS 156
>gi|323489504|ref|ZP_08094731.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
gi|323396635|gb|EGA89454.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
Length = 223
Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 21/223 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
++ ++I D++ ++AV+K V ++ + A+ G EN+ + KK
Sbjct: 4 IKPIFEEITKQLSAVN---DTIQIIAVTKQVGIERTKEAIQAGIHHLGENRPEGLSKKLE 60
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + +V +IG+LQ+ KV ++++ D + ++ R A + + +R + ++QV
Sbjct: 61 AIDE--NVSWHYIGNLQTRKVKDVINEIDYLHSLDRLSLAKEIQK---RATRPVNCFVQV 115
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
N E KSGI P T +F+ + V GLM + P + + + +L
Sbjct: 116 NVSGEESKSGIEPEDTINFIESLEAYDNIKVVGLMTMAPNTSDESVIREAFKGL-KSLQL 174
Query: 187 ------------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
T+ SMGM+ D+ +A GA+ VRIG+ + G
Sbjct: 175 QVSEKNWAHAPCTECSMGMSNDYLIAAQEGASFVRIGTALVGA 217
>gi|291519441|emb|CBK74662.1| Predicted enzyme with a TIM-barrel fold [Butyrivibrio fibrisolvens
16/4]
Length = 164
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 11/163 (6%)
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D+ IG LQ NKV IV +I +V + A ++++ K+ +P+ I+VN
Sbjct: 1 MPKDIDWHLIGHLQRNKVKYIVDQVKLIHSVDSYRLAEEINIQAKKKGVVVPILIEVNAA 60
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-------- 181
E K G+ +T +++ GLM I P + P+ + + +I
Sbjct: 61 NEATKFGVKVEETAQLCEEIAHLDAVHIMGLMTIAPNVVVPEENRAIFHKIKALSVDIAS 120
Query: 182 ---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT DFE+AI GAT VR+G+ IFGER
Sbjct: 121 KNIDNVDMRILSMGMTNDFEVAIEEGATHVRVGTAIFGERNYS 163
>gi|126435840|ref|YP_001071531.1| alanine racemase domain-containing protein [Mycobacterium sp. JLS]
gi|126235640|gb|ABN99040.1| alanine racemase domain protein [Mycobacterium sp. JLS]
Length = 254
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 24/219 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIG 80
++L+ V+K + IR+ G FAE++ QEA KK V+ +G
Sbjct: 33 DVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEFAGDPVRWHMVG 92
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLE------MIKQSRFLPVYIQVNTGYEIQK 134
+Q NK + +V K + L ++ L VY+Q++ ++++
Sbjct: 93 RIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVER 152
Query: 135 SGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-----------SEI 180
G+ P L GLM IPP + F L EI
Sbjct: 153 GGVDVDQPELIDQLCAAVDSAEALEFVGLMGIPPLGADAGSAFARLQSEWRRVRQRRKEI 212
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R + +LS GM+ D E+A+ G+T VR+G+ + G RP
Sbjct: 213 GRGQRF-ELSAGMSGDLEMAVRHGSTCVRVGTALMGPRP 250
>gi|313837213|gb|EFS74927.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA2]
gi|314927769|gb|EFS91600.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL044PA1]
gi|314971984|gb|EFT16082.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA3]
Length = 198
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYQAGYRLFGENKVQDALAKSELMDADHPGLEWAIIGGLQTNKAKYVARFAAEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + ++ L V +QVN+ E QKSGI P++ +F L+V G
Sbjct: 61 LDSLKVAHELDKRLQQEGHQLRVLVQVNSSAEPQKSGIAPDEAVEFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSPDQQAVADCFDLVAATQEKLRQEAGDISSWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGERPC 220
RIG+ IFG R
Sbjct: 181 RIGTDIFGARDP 192
>gi|213585554|ref|ZP_03367380.1| hypothetical protein SentesTyph_31522 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 189
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 3/184 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEIA 181
++A
Sbjct: 181 RQMA 184
>gi|213622408|ref|ZP_03375191.1| hypothetical protein SentesTyp_34798 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 186
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 3/184 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + +L + GLM IP + F +
Sbjct: 121 PALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVA 180
Query: 178 SEIA 181
++A
Sbjct: 181 RQMA 184
>gi|268679691|ref|YP_003304122.1| alanine racemase domain protein [Sulfurospirillum deleyianum DSM
6946]
gi|268617722|gb|ACZ12087.1| alanine racemase domain protein [Sulfurospirillum deleyianum DSM
6946]
Length = 225
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 100/217 (46%), Gaps = 10/217 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+IE + + V +VA SK + I GQ F ENK+Q+ K
Sbjct: 10 FDAILNRIEKARLGVS-GHHIVKIVAASKSATPQMIEAMYEIGQRSFGENKIQDMSDKVH 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L ++ FIG LQ+NK+++++ ++ ++S + A + + +S+ + +Q
Sbjct: 69 ALSHL-PLEWHFIGRLQTNKINQLIDLDPFLMHSLSSLELAQEIDKRLHVKSKTMSALLQ 127
Query: 126 VNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N+ YE QK+G+ + + + + ++G+M I + K ++
Sbjct: 128 INSAYEEQKAGVLSEEALEIYEQISLTCKHIQLKGVMSIGAHSEDTKAIQKSFEATHKLF 187
Query: 182 RECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ DFELAIA G+ VR+GS +F
Sbjct: 188 ESLQNKGAKYCSMGMSNDFELAIACGSNMVRLGSLLF 224
>gi|297603837|ref|NP_001054662.2| Os05g0150000 [Oryza sativa Japonica Group]
gi|255676024|dbj|BAF16576.2| Os05g0150000 [Oryza sativa Japonica Group]
Length = 214
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 16/208 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 9 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
D++ FIG+LQSNK +++ ++ V + + + L V
Sbjct: 69 Q--LPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 126
Query: 123 YIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P+ + + L GLM I + P +
Sbjct: 127 LVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANC 186
Query: 178 -SEIARECKLT----KLSMGMTRDFELA 200
E+ +E + +LSMGM+ DFE A
Sbjct: 187 RKEVCKELGIPEEQCELSMGMSADFEQA 214
>gi|302674964|ref|XP_003027166.1| hypothetical protein SCHCODRAFT_61244 [Schizophyllum commune H4-8]
gi|300100852|gb|EFI92263.1| hypothetical protein SCHCODRAFT_61244 [Schizophyllum commune H4-8]
Length = 280
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/269 (24%), Positives = 102/269 (37%), Gaps = 65/269 (24%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQEA 61
L + LQ + +++ ++ + +LVAVSK + + GQ F EN +QE
Sbjct: 14 LLDNLQDIRDRVKAASGASN-----PTLVAVSKYKPASDVLACFEHAGQRDFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI-----KQ 116
+ +++ FIG+LQSNK +V++ ++ + T + L
Sbjct: 69 VD--KAKQLPAEIRWHFIGTLQSNKSKTLVAIPNLHTIQTLTSTKAANLLNKALSEAGDA 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT-----------------KDFVILCRQKYQLNVEG 159
R L V IQVNT E KSG+ P + K V + L ++G
Sbjct: 127 QRRLNVLIQVNTSGEENKSGLPPLTSTDATLTQTDAADTHELVKLAVHVLEHCPFLRLQG 186
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKL------------------------------ 189
LM I + E L
Sbjct: 187 LMTIGSIEQSINA-----KEGEENHDFKTLLATRDALQAHLGARFADKTAAYGEEGRLLV 241
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ DFE A+ +G+ VR+G+GIFG R
Sbjct: 242 SMGMSADFEAALRAGSDIVRVGTGIFGGR 270
>gi|254459216|ref|ZP_05072638.1| conserved hypothetical protein TIGR00044 [Campylobacterales
bacterium GD 1]
gi|207084109|gb|EDZ61399.1| conserved hypothetical protein TIGR00044 [Campylobacterales
bacterium GD 1]
Length = 224
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 8/215 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +K+E + + V VA+SK + I + GQ F ENK+Q+ K K
Sbjct: 10 IDNVVRKVETARLKVS-GHHIVKTVAISKYSTAADIAKLYNIGQRAFGENKVQDLKAKAT 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + ++ F+G+LQ NK++ ++ + + + A L ++ + L +Q
Sbjct: 69 ELEEL-PLEWHFVGNLQKNKINNLLEINPTLFHALDSMELAEELQKKLEAKDMILDALLQ 127
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N+ E K G MP ++ + + R+ +N++G+M I + EI
Sbjct: 128 INSAKEESKHGFMPEDASEAYARIQRECPNINLKGVMSIGAHSDDRDVIKKSFETTYEIY 187
Query: 182 REC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T SMGM+ DFELAI G+ VR+GS +F
Sbjct: 188 KNLDGATICSMGMSGDFELAIECGSNMVRLGSIMF 222
>gi|315638347|ref|ZP_07893526.1| proline synthetase associated protein [Campylobacter upsaliensis
JV21]
gi|315481558|gb|EFU72183.1| proline synthetase associated protein [Campylobacter upsaliensis
JV21]
Length = 209
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQS 84
+V LVA SK V++ I+ G F EN+++ +K L+ E ++ FIG+LQS
Sbjct: 11 KNVRLVAASKYVNANTIKEFYHKGISEFGENQVKALSEKKELLKDENLTIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
NK++ ++ ++ + L + + L +++N+ +E KSGI N+ +
Sbjct: 71 NKINLLIKQRPILW--QSCNSLKLAKAVDKRLNYTLDTLLEINSAFEENKSGIELNKAFE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------SEIARECKLTKLSMGMTRDF 197
+++ + + LN++G+MCI + K E ++ SMGM+ DF
Sbjct: 129 EYLQIQEECKNLNLKGVMCIGTHSDDVKKIQKSFEDTYRIYEKLQKHGANICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
ELA+ G+ +R+GS +F
Sbjct: 189 ELALKCGSNMLRLGSILF 206
>gi|205373283|ref|ZP_03226087.1| hypothetical protein Bcoam_08120 [Bacillus coahuilensis m4-4]
Length = 191
Score = 109 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 16/191 (8%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
++ + A+ G EN+ + K+ + +V +IG+LQ+ KV +++ D +
Sbjct: 2 SIQRAKEAIDAGVQHLGENRDEGFLAKFEEIGS--NVTWHYIGNLQTRKVKSVINKVDYL 59
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
++ R A + + + + ++QVN E K GI P +F+ + V
Sbjct: 60 HSLDRLSLAKEIEK---RANAPVLCFVQVNVSGEESKQGIAPEHIMEFIKELAHFSNIKV 116
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIA------RECKLT-----KLSMGMTRDFELAIASGAT 206
GLM + P + + ++ + L +LSMGM+ DFELAI GAT
Sbjct: 117 VGLMTMAPYSSDEVLLRTIFQKLRVLRDEIKNLNLDYAPCQELSMGMSNDFELAIEEGAT 176
Query: 207 SVRIGSGIFGE 217
+RIG+ + G
Sbjct: 177 YIRIGTSLVGN 187
>gi|154149419|ref|YP_001406195.1| hypothetical protein CHAB381_0608 [Campylobacter hominis ATCC
BAA-381]
gi|153805428|gb|ABS52435.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 215
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 11/216 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL +IE + A ++V L+AVSK VD+ + S GQ+ F EN++QE K+K
Sbjct: 2 KLSEISDRIEKARAGANIW-ENVKLLAVSKNVDTNAVENLFSQGQIDFGENRVQELKRKC 60
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + ++ FIG+LQ NK++++++L V+ + L + L ++
Sbjct: 61 -EILVDLPLKWHFIGTLQKNKINQLITLKPVLW--QSCNSFELAVAVDKRLDYRLDTLLE 117
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIA 181
+N E KSGI ++ + + + LN+ G+M I + K +I
Sbjct: 118 INVANEDSKSGISADEAIDTYRKIKAECKNLNLVGVMSIGAHSDDLKEIIKSFELTYKIF 177
Query: 182 RECK---LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ SMGM+ DFE AI G+ VR+G +
Sbjct: 178 ENLQKSGAAICSMGMSADFETAIKCGSNMVRLGRIL 213
>gi|301166825|emb|CBW26402.1| putative alanine racemase [Bacteriovorax marinus SJ]
Length = 237
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 19/203 (9%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSLQSNKVS 88
+AV+K I ++ G F EN++ + ++K + K+ DV FIG LQSNK++
Sbjct: 28 IAVTKYSPVDDIFISYDLGHRDFGENRVLDLQEKALEFEKKGLDDVHWHFIGHLQSNKIN 87
Query: 89 E---IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--- 142
I +L + S +L+ E + L +++QVNT E QK G +
Sbjct: 88 RLLKIPNLKYIHSIDSLSLLEQILAKEDQYRGERLGLFLQVNTSAEEQKQGFSTYDSLAG 147
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAM---------GNPKPHFYLLSEIARECKLTKL--SM 191
L ++ ++GLM + K +A + +T L SM
Sbjct: 148 AVNHFLDEHGKRIYLKGLMTMGKIRTSDIEGEARECFKKLHRFKERLADDFGMTDLCLSM 207
Query: 192 GMTRDFELAIASGATSVRIGSGI 214
GM+ D+E+AI G+ +R+GS +
Sbjct: 208 GMSGDYEVAIEEGSDFIRVGSAL 230
>gi|257791830|ref|YP_003182436.1| alanine racemase domain-containing protein [Eggerthella lenta DSM
2243]
gi|257475727|gb|ACV56047.1| alanine racemase domain protein [Eggerthella lenta DSM 2243]
Length = 234
Score = 109 bits (271), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ ++ A+ G F EN+ + K + FIG++QS ++ +IV ++
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRA---RFPQQTWHFIGNIQSRRIPDIVRDAALVH 95
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ +++ + V ++VN E KSG+ P++ + C + V
Sbjct: 96 SLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVRVR 155
Query: 159 GLMCIPPAMG--NPKPHFYLLSEIARECKL----------TKLSMGMTRDFELAIASGAT 206
GLM + P + F L+ + E +L +LSMGM+ D+ AIA GAT
Sbjct: 156 GLMTMAPQGDAQRARACFADLARLRDEVRLGLDGEQAAVFDELSMGMSEDWHEAIAEGAT 215
Query: 207 SVRIGSGIF 215
VRIG +F
Sbjct: 216 IVRIGRALF 224
>gi|312947482|gb|ADR28309.1| putative enzyme [Escherichia coli O83:H1 str. NRG 857C]
Length = 169
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ ++ FIG LQSNK + FD T+ R + A+ L+ + + L V
Sbjct: 1 MRYFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNV 60
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
IQ+N E KSGI + + + +L + GLM IP F + ++A
Sbjct: 61 LIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAV 120
Query: 182 -------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 121 AFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 167
>gi|323356254|gb|EGA88058.1| YBL036C-like protein [Saccharomyces cerevisiae VL3]
Length = 247
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 22/233 (9%)
Query: 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SREKTASLLSLEMIK 115
+ D++ FIG LQ+NK ++ + ++ + K + +
Sbjct: 75 LIE--KAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAM----- 167
+ +Q+NT E QKSG+ L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSREDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHED 192
Query: 168 GNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E ++ KLSMGM+ DF AI G VRIG+ IF
Sbjct: 193 SKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIF 245
>gi|325830003|ref|ZP_08163461.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
gi|325488170|gb|EGC90607.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
Length = 234
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ ++ A+ G F EN+ + K + FIG++QS ++ +IV ++
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRA---RFPQQTWHFIGNIQSRRIPDIVRDAALVH 95
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ +++ + V ++VN E KSG+ P++ + C + V
Sbjct: 96 SLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVRVR 155
Query: 159 GLMCIPPAMG--NPKPHFYLLSEIARECKL----------TKLSMGMTRDFELAIASGAT 206
GLM + P + F L+ + + +L +LSMGM+ D+ AIA GAT
Sbjct: 156 GLMTMAPQGDAQRARACFADLARLRDKVRLGLDGEQAAVFDELSMGMSEDWHEAIAEGAT 215
Query: 207 SVRIGSGIF 215
VRIG +F
Sbjct: 216 IVRIGRALF 224
>gi|317489830|ref|ZP_07948327.1| alanine racemase domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|316911079|gb|EFV32691.1| alanine racemase domain-containing protein [Eggerthella sp.
1_3_56FAA]
Length = 234
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ ++ A+ G F EN+ + K + FIG++QS ++ +IV ++
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRA---RFPQQTWHFIGNIQSRRIPDIVRDAALVH 95
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ +++ + V ++VN E KSG+ P++ + C + V
Sbjct: 96 SLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVRVR 155
Query: 159 GLMCIPPAMG--NPKPHFYLLSEIARECKL----------TKLSMGMTRDFELAIASGAT 206
GLM + P + F L+ + + +L +LSMGM+ D+ AIA GAT
Sbjct: 156 GLMTMAPQGDAQRARACFADLARLRDKVRLGLDGEQAAVFDELSMGMSEDWHEAIAEGAT 215
Query: 207 SVRIGSGIF 215
VRIG +F
Sbjct: 216 IVRIGRALF 224
>gi|314923046|gb|EFS86877.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL001PA1]
gi|314966818|gb|EFT10917.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL082PA2]
gi|315093262|gb|EFT65238.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL060PA1]
gi|315103480|gb|EFT75456.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA2]
gi|327327644|gb|EGE69420.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL103PA1]
Length = 198
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDDDHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGERPC 220
RIG+ IFG R
Sbjct: 181 RIGTDIFGTRDP 192
>gi|21672794|ref|NP_660861.1| hypothetical protein BUsg531 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25009595|sp|Q8K929|Y531_BUCAP RecName: Full=UPF0001 protein BUsg_531
gi|21623443|gb|AAM68072.1| hypothetical 25.8 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 229
Score = 108 bits (270), Expect = 5e-22, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 8/205 (3%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
P + ++AVSK KI++A+S G F EN +QE K L+K ++ F
Sbjct: 20 KKNNYPLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHF 79
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK I FD +T+ REK A LL+ K+S + V +Q+N E+ K+GI
Sbjct: 80 IGKVQSNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFPMNVLMQINISNEVTKNGIC 139
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP-------AMGNPKPHFYLLSEIARECK-LTKLS 190
K LN G+M +P N K ++ +E+ +E + + LS
Sbjct: 140 IKNYKKLAKTISLMPNLNFRGIMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLS 199
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
+G + D E A+ + +RIG IF
Sbjct: 200 LGTSFDIENALLFHSNMIRIGRFIF 224
>gi|57900473|dbj|BAD87885.1| alanine racemase-like [Oryza sativa Japonica Group]
Length = 192
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 80/215 (37%), Gaps = 40/215 (18%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +A + R ++V +VAV K +R G F EN +QE K
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
D++ FIG LQSNKV +++ + V +++
Sbjct: 74 Q--LPEDIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDN------------------VKI 113
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ S + + K V + + P F
Sbjct: 114 ANHLDRAVSSLGRDPLKVLVQALVNCKLEVCKAI-------DMPAEQF------------ 154
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AI G+TSVRIGS IFG R
Sbjct: 155 -ELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYP 188
>gi|302561130|ref|ZP_07313472.1| YggS family pyridoxal phosphate enzyme [Streptomyces griseoflavus
Tu4000]
gi|302478748|gb|EFL41841.1| YggS family pyridoxal phosphate enzyme [Streptomyces griseoflavus
Tu4000]
Length = 239
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+LV V+K + +R G AEN+ Q+A
Sbjct: 8 LAANLARVEERIAAACAAAGRAREEVTLVVVTKTYPADDVRALAELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V D +++V R + + LS E ++ R +
Sbjct: 68 PKAAACADL-PLTWHFVGQLQTNKVRSVVGYADFVQSVDRSRLVTALSKEAVRAGREIGC 126
Query: 123 YIQVN----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV G ++ G+ P + L + L + GLM + P G + F
Sbjct: 127 LIQVALDAGEGGRGERGGVAPGGVAELAGLIARSEGLRLGGLMTVAPLTGEYAGREQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 GRLMDLSTDLRRTHPTANMVSAGMSADLEQAVAAGATHVRVGSAVLGVRP 236
>gi|162447564|ref|YP_001620696.1| hypothetical protein ACL_0704 [Acholeplasma laidlawii PG-8A]
gi|161985671|gb|ABX81320.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A]
Length = 197
Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 7/189 (3%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
++VA SK +++ + G F EN +Q K L D+ IG LQSNK
Sbjct: 10 TIVA-SKYFSIDEMKKIYNLGARHFGENYVQSLLDKKSSLNDLKDISWHLIGHLQSNKTK 68
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I++ D + T+ K + ++ L +IQ+N K GI+ +F+
Sbjct: 69 LIINEIDYLHTLDSIKL---AGMIQKYRNTPLNCFIQINLEKNDNKEGILIENLDEFIQE 125
Query: 149 CRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
++ ++N+ G M I + F L+++ + L SMGM+ D+ELAI +
Sbjct: 126 IKKYDKINLIGFMAIGAIDDVVRTEEIFKTLNDLKMKYNLNYTSMGMSNDYELAIKYHSD 185
Query: 207 SVRIGSGIF 215
+RIGS +F
Sbjct: 186 FLRIGS-LF 193
>gi|314981156|gb|EFT25250.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA3]
gi|315091979|gb|EFT63955.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA4]
Length = 198
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDDDHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +Q+N+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQMNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPHFYLL-------SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGERPC 220
RIG+ IFG R
Sbjct: 181 RIGTDIFGTRDP 192
>gi|294659120|ref|XP_461459.2| DEHA2F25762p [Debaryomyces hansenii CBS767]
gi|202953632|emb|CAG89878.2| DEHA2F25762p [Debaryomyces hansenii]
Length = 249
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 41/248 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +++ N + V LVAVSK+ S I + G F EN +QE
Sbjct: 15 ISSAYDKISEQVSNLSAEHSSKP--VRLVAVSKLKPSSDIMALYNHGVRHFGENYVQELI 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS----LEMIKQSR 118
K D++ FIG LQ+ K ++ + + V + +
Sbjct: 73 GKSQE--LPKDIKWHFIGGLQTGKCKDLSKGVENLYAVEAIDSLKKCKKLESCRKNAEGN 130
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVI------LCRQKYQLNVEGLMCIPPAMGNPKP 172
+ +Y+Q+NT E QKSG + +Q LN++GLM I +
Sbjct: 131 SINIYLQINTSGEDQKSGYSLEVLDELYETVEFLLDPKQCTLLNIQGLMTIGSFSESISE 190
Query: 173 HFY--------LLSEIARECKLT-KLSMGMTRDFELAIAS---------GATSVRIGSGI 214
L ++ + +L +LSMGM+ DF+ AI I
Sbjct: 191 EGNADFKRLLTLKQKLDDKYRLDLELSMGMSNDFKEAIKQGSSSVRVGS---------SI 241
Query: 215 FGERPCQT 222
FG RP ++
Sbjct: 242 FGARPTKS 249
>gi|320334219|ref|YP_004170930.1| hypothetical protein Deima_1616 [Deinococcus maricopensis DSM
21211]
gi|319755508|gb|ADV67265.1| protein of unknown function UPF0001 [Deinococcus maricopensis DSM
21211]
Length = 209
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 9/194 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
S LVA++K ++I L G EN+ QE + K FIG LQ
Sbjct: 21 PGSARLVAITKGHSVEEITEHVLQHGTFPLGENRGQELRDKARA---LPGQDWHFIGPLQ 77
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK+ + ++ T+ A ++ R V +QV+ G + N
Sbjct: 78 RNKIKYLAP-VTLVHTLEVAWQAEEIARHAEAWGRAPDVLLQVSNGERQKHGVSAENLRA 136
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH--FYLLSEIARECKLTKLSMGMTRDFELAI 201
+ + + NV GLM + P F A + L++LSMGM+ D+ A+
Sbjct: 137 LYDQVRQTGL--NVRGLMVMAPYDDPAAARAVFADTQARAHDLGLSELSMGMSDDYPEAV 194
Query: 202 ASGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 195 RYGATLVRVGRALF 208
>gi|240279165|gb|EER42670.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325089453|gb|EGC42763.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 306
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 65/276 (23%)
Query: 2 SLGNKLQVFKQKIENSAILAK---------RPKDSVSLVAVSKMVDSKKIRVALSCGQ-V 51
+L L +I +++ A RP+ V LVAVSK+ + I++ +
Sbjct: 30 TLVTNLSAVTARITSASASANVSQTWPQAQRPQCPVRLVAVSKLKPASDIQILHQYNPAL 89
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV----SEIVSLFDVIETVSREKTAS 107
F EN LQE + ++ FIG LQSNK ++ L+ V S +K +
Sbjct: 90 HFGENYLQELLE--KSKILPPGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASL 147
Query: 108 LLSLEMIKQSR---------------------------FLPVYIQVNTGYEIQKSGIMPN 140
L + ++ L V++QVNT E KSG+ P
Sbjct: 148 LDRGWGERSTQAGVGEDAATTTAAASASEGRDAGADGDRLRVFVQVNTSGEDSKSGVEPA 207
Query: 141 QTKDFVILCR-QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIA----RECKL-- 186
+ R Q +L ++GLM I M N F L E +E L
Sbjct: 208 EAVRLCRYIREQCPRLKLQGLMTIGAIARSRATTMENKNEDFLCLRETKERVEKELGLLE 267
Query: 187 --------TKLSMGMTRDFELAIASGATSVRIGSGI 214
+LSMGM+ DFE AIA G+T VR+GS +
Sbjct: 268 GDEEAGEGLELSMGMSGDFEGAIAMGSTQVRVGSVL 303
>gi|320094183|ref|ZP_08025992.1| FkuA protein [Actinomyces sp. oral taxon 178 str. F0338]
gi|319978880|gb|EFW10414.1| FkuA protein [Actinomyces sp. oral taxon 178 str. F0338]
Length = 245
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 20/234 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-----GQVIFAE 55
M++ + ++ I+ +A A R D V+L +K + A +C G V+
Sbjct: 1 MTIYEAISAARRAIDEAARAAGRT-DRVALELAAKTRTPGECYEAAACLARLGGPVLVGH 59
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
N++QEA+ +R+ ++ IG LQSNK+++ ++ D +ETVS + A + +
Sbjct: 60 NRVQEARATAEAVRRVDGARIHLIGPLQSNKINQALACVDAVETVSSAELARRIDA---R 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKP 172
+R LPV++QVN E KSG P+ V + L + G M + +
Sbjct: 117 ATRPLPVFVQVNVSGEATKSGCAPDAVAPVVDAVSECANLRLAGFMTVGLNSTDEAPVRR 176
Query: 173 HFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L I +LSMGM+RD AIA GAT VR+G+ +FG R
Sbjct: 177 AYARLRSIRDAAAARTGIGAASLELSMGMSRDMAWAIAEGATIVRLGTAVFGAR 230
>gi|223985287|ref|ZP_03635367.1| hypothetical protein HOLDEFILI_02673 [Holdemania filiformis DSM
12042]
gi|223962743|gb|EEF67175.1| hypothetical protein HOLDEFILI_02673 [Holdemania filiformis DSM
12042]
Length = 213
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ KQ+ +N L+ VSK +I+ G F EN+ QE +
Sbjct: 5 YETIKQQCQNQCE----------LLIVSKHRSVAQIQAYYDRGARDFGENRAQELLE--K 52
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ D++ FIG LQ NKV ++ + ++ + AS+L E + +R + V +
Sbjct: 53 APQLPQDIRWNFIGHLQRNKVRAVLPYLYRVCSLDSLELASVLDREAARLNRTIGVLAEF 112
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARE 183
N E K+G+ Q F RQ L EG++ + P + + + E + +
Sbjct: 113 NLAEESTKTGMDKTQAFAFFEALRQFEHLIPEGILVMGPHVEDEAAIAAVFHEARALFDQ 172
Query: 184 CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
K T SMGM+ D+ +A+ G+T +R+G+ +F
Sbjct: 173 LKAQFGDSRFTICSMGMSHDYPIALREGSTQLRLGTILF 211
>gi|171914425|ref|ZP_02929895.1| predicted enzyme [Verrucomicrobium spinosum DSM 4136]
Length = 164
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
DV+ IG LQSNKV +++ + + I +V A + + +Y++VN
Sbjct: 8 PPDVRWHLIGHLQSNKVRKVLPVVEAIHSVDSLDLARNIHRIAGELGVVSQIYLEVNVSG 67
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIAREC--- 184
E K G P + + +LN+ GLM +PP + +F L E+
Sbjct: 68 EASKYGFEPAGLEAELEELLALDRLNLVGLMTVPPIGESGEESRRYFAELRELRDRLETR 127
Query: 185 ---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 128 SGKRLPGLSMGMSGDYETAVEEGATIVRVGSAIFGGR 164
>gi|57241930|ref|ZP_00369870.1| conserved hypothetical protein TIGR00044 [Campylobacter upsaliensis
RM3195]
gi|57017122|gb|EAL53903.1| conserved hypothetical protein TIGR00044 [Campylobacter upsaliensis
RM3195]
Length = 209
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 10/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQS 84
+V LVA SK VD+ I+ G F EN+++ +K L+ E ++ FIG+LQS
Sbjct: 11 KNVHLVAASKYVDANTIKEFYHKGISEFGENQVKALSEKKELLKDENLTIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
NK++ ++ ++ + L + + L +++N+ E KSGI N+ +
Sbjct: 71 NKINLLIKQRPILW--QSCNSLKLAKAVDKRLNYILDTLLEINSASEENKSGIELNKAFE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------SEIARECKLTKLSMGMTRDF 197
+++ + + LN++G+MCI + K E ++ SMGM+ DF
Sbjct: 129 EYLQIQEECKNLNLKGVMCIGTHSNDVKKIQKSFEDTYRIYEKLQKHGANICSMGMSSDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
ELA+ G+ +R+GS +F
Sbjct: 189 ELALKCGSNMLRLGSILF 206
>gi|6137630|pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-
Selenomet Crystal
Length = 256
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 22/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 14 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 73
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SREKTASLLSLEMIK 115
+ D++ FIG LQ+NK ++ + ++ + K + +
Sbjct: 74 LIE--KAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 131
Query: 116 QSRFLPVYIQVNTGYEIQKSGIM--------PNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
+ +Q+NT +E QKSG+ + + L G +
Sbjct: 132 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLXTIGSWNVSHED 191
Query: 168 GNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLS G + DF AI G VRIG+ IFG RP +
Sbjct: 192 SKENRDFATLVEWKKKIDAKFGTSLKLSXGXSADFREAIRQGTAEVRIGTDIFGARPPK 250
>gi|300087752|ref|YP_003758274.1| alanine racemase domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527485|gb|ADJ25953.1| alanine racemase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 221
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 20/223 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K++I +V++ AV K +I AL G I A N +QEA+
Sbjct: 5 ITKNIECIKKEI----------PSTVTIEAVVKKRSIPEITTALQSGVDIVAFNYVQEAR 54
Query: 63 KKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ + + +IG LQ NKV++ LFD IET+ A L+ K +P
Sbjct: 55 EIIGCLNKSFIPFKSHYIGHLQKNKVAKSTELFDFIETIDDTTLAQSLNNTCRKSGVIMP 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSE 179
V IQVN G E KSG P+ L + G+M + P + + + P F
Sbjct: 115 VLIQVNIGRESSKSGAWPDNVIQLAETISCLPNLCLRGIMTMGPEVPSIRLRPFFVETKT 174
Query: 180 IAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E LSMGM+ + LAI GA +R+G IF
Sbjct: 175 LLDELVSRCLVSGPEILSMGMSDSYMLAIEEGANFIRLGKAIF 217
>gi|107099380|ref|ZP_01363298.1| hypothetical protein PaerPA_01000392 [Pseudomonas aeruginosa PACS2]
Length = 197
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 65/192 (33%), Positives = 81/192 (42%), Gaps = 6/192 (3%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
SK + +R A + G F EN LQEA K L + FIG +QSNK I
Sbjct: 2 SKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADL-PLNWHFIGPIQSNKTRPIAEH 60
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
F + +V R K A LS + L V +QVN E KSG P +Q
Sbjct: 61 FQWVHSVDRLKIAQRLSEQRPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQLP 120
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL-----SMGMTRDFELAIASGATSV 208
L + GLM IP + + L SMGM+ D E AI GAT V
Sbjct: 121 NLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWV 180
Query: 209 RIGSGIFGERPC 220
RIG+ +FG R
Sbjct: 181 RIGTALFGARDY 192
>gi|269794410|ref|YP_003313865.1| pyridoxal phosphate enzyme, YggS family [Sanguibacter keddieii DSM
10542]
gi|269096595|gb|ACZ21031.1| pyridoxal phosphate enzyme, YggS family [Sanguibacter keddieii DSM
10542]
Length = 273
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 42/258 (16%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD--------SVSLVAVSKMVDSKKIRVALSC----- 48
S + L +IE + A R V L+ +K D+ +R A+
Sbjct: 17 SFADALARVHDRIERARTSAGRDDRDGSDGSDDKVRLLLATKTQDADDVRAAVLADRAAG 76
Query: 49 --GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI--------- 97
G+V+ EN++QE P + + + IG+LQSNKV+ +
Sbjct: 77 RPGEVLVGENRVQELT-AKAPALADLALTVHLIGALQSNKVNHALRALAQHRQACVETVD 135
Query: 98 -----ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
E + + L VY+QVN E K+G+ P + + +
Sbjct: 136 SIALAEKIGSRVLTAAAEAGDGSTDIPLDVYVQVNVSGEESKAGVSPEAAVELALAVAEV 195
Query: 153 YQLNVEGLMCIPPAMGNPK---PHFYLLSEIAREC---------KLTKLSMGMTRDFELA 200
L + G M I + + F L E+ E T+LSMGM++D E A
Sbjct: 196 DGLRLSGFMTIGARSSDERLVRAGFARLRELRDEVLGSGAPGTSAATELSMGMSQDLEWA 255
Query: 201 IASGATSVRIGSGIFGER 218
+A GAT VR+GS +FG R
Sbjct: 256 VAEGATLVRVGSAVFGAR 273
>gi|153840601|ref|ZP_01993268.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|149745736|gb|EDM56866.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
Length = 214
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 11/183 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE---AKKKWIPLRKEWDVQLRFIGSLQSNK 86
L+AVSK + I A GQ F EN +QE + + + ++ FIG +QSNK
Sbjct: 1 LLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ FD + T+ R K A L+ + ++ + L V IQVNT E KSG+ + +
Sbjct: 61 SRLVAEHFDWVHTIDRAKIAQRLNEQRPQELKPLQVLIQVNTSGEDSKSGVSDAEIFELA 120
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFE 198
L + L + GLM IP + + ++A + ++ LSMGM+ D
Sbjct: 121 ELISRLPNLTLRGLMSIPANVSDYDAQLREFEKLATLKQTLEQQYPEIDTLSMGMSGDMT 180
Query: 199 LAI 201
AI
Sbjct: 181 AAI 183
>gi|225555026|gb|EEH03319.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 306
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 75/276 (27%), Positives = 110/276 (39%), Gaps = 65/276 (23%)
Query: 2 SLGNKLQVFKQKIENSAILAK---------RPKDSVSLVAVSKMVDSKKIRVALSCGQ-V 51
+L L +I +++ A RP+ V LVAVSK+ + I++ +
Sbjct: 30 TLVTNLSAVTARITSASASANVSQTRPQAQRPQCPVRLVAVSKLKPASDIQILHQYSPAL 89
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV----SEIVSLFDVIETVSREKTAS 107
F EN LQE + ++ FIG LQSNK ++ L+ V S +K +
Sbjct: 90 HFGENYLQELLE--KSKILPPGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASL 147
Query: 108 LLSLEMIKQSR---------------------------FLPVYIQVNTGYEIQKSGIMPN 140
L + ++ L V++QVNT E KSG+ P
Sbjct: 148 LDRGWGERSTQAGVGEDAATTTAAASASEGRDAGADGDRLRVFVQVNTSGEDSKSGVEPA 207
Query: 141 QTKDFVILCR-QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIA----RECKLTK 188
+ R Q +L ++GLM I M N F L E +E L +
Sbjct: 208 EAVRLCRYIREQCPRLKLQGLMTIGAIARSRATTMENKNEDFLCLRETKERVEKELGLLE 267
Query: 189 ----------LSMGMTRDFELAIASGATSVRIGSGI 214
LSMGM+ DFE AIA G+T VR+GS +
Sbjct: 268 GDEEAGEGLELSMGMSGDFEGAIAMGSTQVRVGSVL 303
>gi|308063841|gb|ADO05728.1| hypothetical protein HPSAT_05040 [Helicobacter pylori Sat464]
Length = 192
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 7/191 (3%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK + I+ +C Q F ENK+Q+ K K L ++ IGSLQ NK++ +
Sbjct: 1 MAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHL-PLEWHMIGSLQENKINAL 59
Query: 91 VS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+S ++ ++ K A + L +QVN+ YE KSG+MP +T +
Sbjct: 60 LSLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPEETLEIYSQI 119
Query: 150 -RQKYQLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK-LTKLSMGMTRDFELAIASG 204
+L ++GLMCI + K ++ K + LSMGM+ DFELAIA G
Sbjct: 120 SETCKRLKLKGLMCIGTHADDEKEIEKSFITTKKLFDRLKNASVLSMGMSDDFELAIACG 179
Query: 205 ATSVRIGSGIF 215
A +RIGS +F
Sbjct: 180 ANLLRIGSFLF 190
>gi|319949991|ref|ZP_08023976.1| alanine racemase domain protein [Dietzia cinnamea P4]
gi|319436344|gb|EFV91479.1| alanine racemase domain protein [Dietzia cinnamea P4]
Length = 242
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 16/210 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-----QLRFIG 80
D V LV V+K + G EN++QEA K L + +G
Sbjct: 31 DEVDLVVVTKFHPVTDVVHLARLGVRDVGENRVQEAAAKVDDLAAADAGLAASVRWNMVG 90
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL------PVYIQVNTGYEIQK 134
+QSNK + + D + +V K A+ L + + PV +Q++ + +
Sbjct: 91 HIQSNKAAAVAGWADRVHSVDSVKVANGLERGRARAADERDGVTSLPVLLQLSLDGDTSR 150
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----ARECKLTKL 189
G+ L + GLM +PP G+P HF +E+ + T+
Sbjct: 151 GGVTREDLPALADHVAGLGHLRLAGLMVVPPLSGDPAAHFADAAEVAAALRRQHPHATEF 210
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S GM+ D E AIA+G+T VR+G+ I G RP
Sbjct: 211 SAGMSGDIEEAIAAGSTCVRVGTAILGPRP 240
>gi|58581040|ref|YP_200056.1| hypothetical protein XOO1417 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425634|gb|AAW74671.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 176
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
++ IG LQSNK FD ++TV R K LL+ L V IQVN E
Sbjct: 15 GLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPLNVLIQVNIDDED 74
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK---- 185
K G P + +L + GLM IP P F + + + K
Sbjct: 75 SKHGCAPEAIDSLAAAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRMQVLFEQLKTRYR 134
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 135 QVDTLSMGMSSDFAEAIAAGATMVRMGTALFGAR 168
>gi|209875933|ref|XP_002139409.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555015|gb|EEA05060.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 243
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 19/231 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++ + + + P ++ VSK + I F EN ++E
Sbjct: 15 IQKSLLNTIAIVDKTCKIFQSPV--PRILIVSKQQPIEAILDIYMLNYRHFGENYVKELV 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSE--IVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K R D+ FIG LQ NKV V +IE++ + A L+ + R++
Sbjct: 73 LKSS--RLPEDIMWHFIGHLQRNKVRSLLTVKNLYIIESLDSIELAYLIQKICEEMKRYV 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFY-LLS 178
VYIQ+ T E K+GI ++K V +LN G M I N + L
Sbjct: 131 NVYIQIKTSTETTKTGINIEESKKLVKYVLDHCPRLNFLGFMTIADNDKNKCSECFSKLV 190
Query: 179 EI-ARECKLTK----------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ AR LSMGM+ DFE+AI +RIGS IFG R
Sbjct: 191 DLRARTLNWMTEQAYSTARCDLSMGMSDDFEIAITHKTNEIRIGSAIFGLR 241
>gi|119494577|ref|ZP_01624710.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
gi|119452083|gb|EAW33294.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
Length = 193
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 21/200 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + ++ DSV +VAV+K V + IR+A + G F EN++ EA
Sbjct: 4 SIAERIAEIRSQV----------PDSVRIVAVTKTVSVEAIRIAYAAGIRDFGENRISEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L+ D+ IG +QSNK + V F I +V K A L +
Sbjct: 54 MEKQEQLQDLSDITWHLIGHIQSNKAIKAVQHFQWIHSVDSLKLAQRLDRLAQESDCQPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
V +QV + K G ++ + + Q Q+ ++GLM IPP F S
Sbjct: 114 VCLQVKILTDPNKYGWTVSELLEDLAELNQCQQIQIKGLMTIPPLGLNHSETVSVFEQTS 173
Query: 179 EIARECK--------LTKLS 190
E+A + + + +LS
Sbjct: 174 ELAHKIQQQGWSNLEMKELS 193
>gi|332241070|ref|XP_003269712.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Nomascus leucogenys]
Length = 242
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 35/227 (15%)
Query: 7 LQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L+ ++++ + RP+D LVAVSK + + A GQ F EN +QE
Sbjct: 17 LRAVNERVQQAVAR--RPQDLPSIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELL 74
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIK 115
+K + +++ FIG LQ V++++++ ++ + + S +
Sbjct: 75 EKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNSSWQKKG 134
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHF 174
L V IQ+NT E K G+ P++T V + L GLM I
Sbjct: 135 SLERLKVMIQINTSGEESKHGVPPSETIAIVEHINAKCPNLEFVGLMTIGSFG------- 187
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++++ DF+ I G+T+VR+GS IFGER
Sbjct: 188 ---HDLSQGPN---------PDFQ--IEVGSTNVRVGSMIFGERDYS 220
>gi|299069051|emb|CBJ40302.1| Putative alanine racemase domain-containing enzyme with a
tim-barrel fold protein (fragment) [Ralstonia
solanacearum CMR15]
Length = 98
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 60/93 (64%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+N G E QK+G++P + + CR YQLNV GLMCIPPA +P HF L IA +
Sbjct: 1 MNIGKEPQKAGVLPAEAPALIGECRDVYQLNVRGLMCIPPAGLDPSGHFAGLRSIAEDHG 60
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D+ AIA GAT VR+GS +FG R
Sbjct: 61 LHILSMGMSADYPQAIAQGATHVRVGSALFGAR 93
>gi|300933349|ref|ZP_07148605.1| hypothetical protein CresD4_04720 [Corynebacterium resistens DSM
45100]
Length = 230
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 13/201 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+ ++K + I V G EN+ QEAK K + +G +Q+ K +
Sbjct: 30 LLPITKFHPVEAIEVLAEFGVGAVGENREQEAKAKHD--VLAGRPAIHMVGQIQTKKANS 87
Query: 90 IVSLFDVIETVSREKTASLLSL------EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+ + TV K L E + LPV +Q + + Q+ G
Sbjct: 88 VARWAAAVHTVDSSKLLHALERGAGLALERGDRHEKLPVLLQWSADGDPQRGGAGGADID 147
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFE 198
Q + + GLM +PP +P F ++ + S GM++D E
Sbjct: 148 ALADEVAQCQHVELRGLMTVPPLDSDPALVFSKGRKLLDAIADRVVGVPVYSAGMSQDLE 207
Query: 199 LAIASGATSVRIGSGIFGERP 219
+AIA G+T VR+G+ I G RP
Sbjct: 208 IAIAEGSTLVRVGTDIMGPRP 228
>gi|239917856|ref|YP_002957414.1| conserved hypothetical protein TIGR00044 [Micrococcus luteus NCTC
2665]
gi|281413651|ref|ZP_06245393.1| hypothetical protein MlutN2_00347 [Micrococcus luteus NCTC 2665]
gi|239839063|gb|ACS30860.1| conserved hypothetical protein TIGR00044 [Micrococcus luteus NCTC
2665]
Length = 262
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 26/224 (11%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRF 78
R +LV V+K ++ + + G EN+ QEA+ K + + F
Sbjct: 38 GREA-EPALVVVTKTHPAEDVVRLAALGVTDVGENRDQEARPKAEAVAAALGADAPRWHF 96
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTAS--------LLSLEMIKQSRFLPVYIQVNTGY 130
+G LQ+NK +V V+E+V R + A E L +QV+
Sbjct: 97 VGQLQTNKAKYVVRYASVVESVDRPELAEALSRALLLRREREPEAAIPDLECLVQVDVDD 156
Query: 131 EIQ---------KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ G P L + GLMC+ P +P+ F L+ +
Sbjct: 157 RADEDRPEGIGPRGGARPEDVPALTDAIAGLPGLRLGGLMCVAPRGLDPEDAFRRLAALG 216
Query: 182 RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ T LSMGM+ D E A+ +GAT VRIGS + G R
Sbjct: 217 AHLRQTHPEATALSMGMSADLEAAVRAGATQVRIGSDVLGARDA 260
>gi|163784800|ref|ZP_02179590.1| hypothetical protein HG1285_05093 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879927|gb|EDP73641.1| hypothetical protein HG1285_05093 [Hydrogenivirga sp. 128-5-R1-1]
Length = 181
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 81/181 (44%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q + E SA + R + V ++ SK +K+ A G F EN++QE
Sbjct: 1 MGIKENYQKILEIAEKSAKKSGRKLEDVIILGASKTQPVEKLIEAYKAGLRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L++ D+ IG LQ+NK V F++I ++ R+ A L K +
Sbjct: 61 GIDKIEKLKEYKDIHWHLIGGLQTNKAKYAVKYFEMIHSLDRKPLADELDKRAKKIGKKQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V I+VN G E K G+ P K+ QK LN+ GLMCIPP N + +
Sbjct: 121 DVLIEVNIGGEESKYGVQPENLKELFEYSMQKENLNILGLMCIPPYSENKEDSRPYFVRL 180
Query: 181 A 181
Sbjct: 181 R 181
>gi|289705620|ref|ZP_06502010.1| pyridoxal phosphate enzyme, YggS family [Micrococcus luteus SK58]
gi|289557670|gb|EFD50971.1| pyridoxal phosphate enzyme, YggS family [Micrococcus luteus SK58]
Length = 262
Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 26/224 (11%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRF 78
R +LV V+K ++ + + G EN+ QEA+ K + + F
Sbjct: 38 GREA-EPALVVVTKTHPAEDVVRLAALGVTDVGENRDQEARPKAEAVAAALGADAPRWHF 96
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTAS--------LLSLEMIKQSRFLPVYIQVNTGY 130
+G LQ+NK +V V+E+V R A E L +QV+
Sbjct: 97 VGQLQTNKAKYVVRYASVVESVDRPDLAEALSRALLLRREREPEAAIPDLECLVQVDVDD 156
Query: 131 EIQ---------KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ G P + L + GLMC+ P +P+ F L+ +
Sbjct: 157 RADEDRPEGIGPRGGARPEDVPALADVVAGLPGLRLGGLMCVAPRGLDPEDAFRRLAALG 216
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ T LSMGM+ D E A+ +GAT VRIGS + G R
Sbjct: 217 AGLRQTHPEATTLSMGMSADLEAAVRAGATQVRIGSDVLGARDA 260
>gi|227504698|ref|ZP_03934747.1| alanine racemase [Corynebacterium striatum ATCC 6940]
gi|227198708|gb|EEI78756.1| alanine racemase [Corynebacterium striatum ATCC 6940]
Length = 231
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 26/237 (10%)
Query: 1 MS----LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
M+ L L+ + +IE+ A A R + L+ V+K + + + G AEN
Sbjct: 1 MNRKEELQAGLERTRAQIEDFARAAGR--EVPQLLPVTKFHPAGDVALLAELGVTDVAEN 58
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE------KTASLLS 110
+ QEA+ K L + IG +Q+ K + + + ++ +
Sbjct: 59 REQEARAKAAELPAV---RFHMIGQIQTKKANHVARWAHSVHSLDSAKLATALDRGVANA 115
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
E + LPV+IQV+ + + G+ V L + L ++G M +PP +
Sbjct: 116 QESGDRDDALPVFIQVSADGDTARGGVALPDVPSLVELVEELVNLELQGFMVVPPLDSDA 175
Query: 171 KPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F + + + K+ S GM+ D AIA+G VR+G+GI G RP
Sbjct: 176 AEVFGRVRTLTDDVARLLGRPLKM---SAGMSADLGEAIAAGTDIVRVGTGIMGPRP 229
>gi|87303805|ref|ZP_01086531.1| hypothetical protein WH5701_00110 [Synechococcus sp. WH 5701]
gi|87281679|gb|EAQ73667.1| hypothetical protein WH5701_00110 [Synechococcus sp. WH 5701]
Length = 171
Score = 102 bits (253), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
Q FIG LQ NKV +V F VI +V A +S +++ V +QV + K
Sbjct: 17 QWHFIGRLQRNKVRGVVKAFSVIHSVDSLALAERVSRIAVEEGCCPDVLLQVKFREDPTK 76
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSM 191
G+ P++ L + GLM + P + F +A + L SM
Sbjct: 77 GGMEPSELLSAWPQLCALPSLRLMGLMTMAPLGLEGEERQSLFVECRSLADQLGLPDCSM 136
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ D+ A+A+G+T +R+GS +FG+R
Sbjct: 137 GMSGDWTEAVAAGSTWLRLGSAVFGQRDVP 166
>gi|297161291|gb|ADI11003.1| hypothetical protein SBI_07883 [Streptomyces bingchenggensis BCW-1]
Length = 203
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 14/200 (7%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
V+K + +R+ G AEN+ Q+A K + F+G LQ+NKV + S
Sbjct: 2 VTKTYPASDVRLLAELGVHHVAENRDQDAAPKAAECADL-PLIWHFVGQLQTNKVRSVAS 60
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV----NTGYEIQKSGIMPNQTKDFVIL 148
D++++V R++ LS + R L IQV +G + ++ G+ P+ +
Sbjct: 61 YADMVQSVDRKRLVDALSRAAVGAGRELGCLIQVALDAESGQQGERGGVAPDGVEALCDA 120
Query: 149 CRQKYQLNVEGLMCIPP----AMGNPKPHFYLLSEIARECKLTK-----LSMGMTRDFEL 199
+ L ++GLM + P G P+ F L EI+ + +S GM+ D E
Sbjct: 121 VVEAQGLRLDGLMTVAPLAGPYAGQPRAAFDRLMEISSSLRAAHPAANMVSAGMSSDLED 180
Query: 200 AIASGATSVRIGSGIFGERP 219
A+A+GAT VR+G+ + G RP
Sbjct: 181 AVAAGATHVRVGTAVLGVRP 200
>gi|164657386|ref|XP_001729819.1| hypothetical protein MGL_2805 [Malassezia globosa CBS 7966]
gi|159103713|gb|EDP42605.1| hypothetical protein MGL_2805 [Malassezia globosa CBS 7966]
Length = 768
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/287 (18%), Positives = 90/287 (31%), Gaps = 69/287 (24%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+ ++ +++I + L+ VSK+ + A GQ F EN +QE
Sbjct: 246 DIEGRIYRIQRRITETCQQQNL-PKKPRLLVVSKLQPPSALMAAYDRTGQRHFGENYVQE 304
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA------SLLSLEMI 114
+ D+Q FIG LQSNK + ++ ++ S + L+
Sbjct: 305 LIE--KARVLPDDIQWHFIGGLQSNKAKLLAAVPNLYAVQSVDSEKLALGLEKTLAKPEH 362
Query: 115 KQSRFLPVYIQVNTGYEIQ---------------KSGIMPNQTKDFVILCRQKYQLNVEG 159
R P+Y+ + + S P + + G
Sbjct: 363 ASLRKAPLYVYIQVNTSGEAGKSGVPAMDAPWDGNSSNKPPLLSLAQTIMLACPHMRFSG 422
Query: 160 LMCIPPAMGNPKPHFYLLSE-------------IARECKLT------------------- 187
LM I + + E +A+ +
Sbjct: 423 LMTIGALTNSQSVQGHEERENPDFLALVKSRKYLAQALEQDSEFQAKLSNTSFWAPQGNL 482
Query: 188 ------------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+LSMGM+ D AIA G+T VRIG+ FG R +
Sbjct: 483 QNVYGTLREHDLELSMGMSADMSSAIAMGSTCVRIGNDSFGARTTNS 529
>gi|227495281|ref|ZP_03925597.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831151|gb|EEH63534.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 276
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/233 (29%), Positives = 102/233 (43%), Gaps = 18/233 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDS-KKIRV--ALSCGQVI--FAENK 57
+ + KI+ A + R + L K + + + AL A N+
Sbjct: 44 IYQNVSEVLDKIQACAEMNHRHAAEIELEIAIKTRSATEALHAGLALEASGRRALLAHNR 103
Query: 58 LQEAKKKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+QEA+ LR IG+LQ NK++ V +FD IE+V A LS +
Sbjct: 104 VQEAQATTPILRDGPLSSFHSVLIGNLQRNKINAAVRVFDEIESVDSLALARALSQRLDP 163
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ LP+ +QVNT E+ KSG++P + + L V G M I +
Sbjct: 164 -TEQLPIMLQVNTSRELSKSGLVPEVALETALEIADLPGLLVTGFMTIGAHTTDQALIGK 222
Query: 176 LLSEIA-------RECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L K LSMGM+ DFELAIA G+T +RIG+ +FG R
Sbjct: 223 SFANLRAIRDEAIKHPSLKKAINLSMGMSSDFELAIAEGSTRIRIGNAVFGPR 275
>gi|27262184|gb|AAN87373.1| hypothetical cytosolic protein [Heliobacillus mobilis]
Length = 182
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G+LQ+NKV I ++I ++ R A + R + ++VN E K G+
Sbjct: 32 GTLQTNKVKYIYDKVELIHSLDRLSLAEAIHKHAGLLQRPIDCLVEVNVSGEESKHGVPK 91
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTK 188
+ F+ +++ GLM + P + N + ++ E+ + ++
Sbjct: 92 QELVPFLRSLSSLDGVHIRGLMTMAPFVDNSEEIRWVFRELRQLSLEVRELNLARVEMQH 151
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D+E+A+ GAT VR+GSG+FGER
Sbjct: 152 LSMGMTNDYEVAVEEGATIVRVGSGLFGER 181
>gi|84994852|ref|XP_952148.1| proline synthetase associated protein [Theileria annulata strain
Ankara]
gi|65302309|emb|CAI74416.1| proline synthetase associated protein, putative [Theileria
annulata]
Length = 205
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 17/218 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS K + +IEN V L+ V+K + I GQ+ F EN++QE
Sbjct: 1 MSYIEKWLELRNEIENF---------GVELLVVTKNCEKTLINELYKLGQINFGENRVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + FIG LQSNK +++ + ++ S + L + +
Sbjct: 52 LYEKSRELDSTI--KWHFIGHLQSNKCGKLLEVPNLYMIQSLDSLELCNLLILKTEKLNR 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--- 177
+ + + ++ + + + + + G+ C
Sbjct: 110 EINVLIQVNTTLKTTQYVTRILESQRLKFCGLMTIGDGGIECFQRLNMIKNVLMEQFIQC 169
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E +SMGM+ D++LAI G+ +RIGS IF
Sbjct: 170 KGLGDEF---IMSMGMSNDYKLAIQMGSNHIRIGSLIF 204
>gi|212535840|ref|XP_002148076.1| alanine racemase family protein, putative [Penicillium marneffei
ATCC 18224]
gi|210070475|gb|EEA24565.1| alanine racemase family protein, putative [Penicillium marneffei
ATCC 18224]
Length = 314
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 66/274 (24%)
Query: 12 QKIENSAI----------LAKRPKDS-VSLVAVSKMVDSKKIRVALSCG----------- 49
+I ++ RP + V LVAVSK+ + + S
Sbjct: 31 ARISAASSTFPTTSTSTTRRHRPANKPVRLVAVSKLKPASDVLALYSRSLPVDESSTPSA 90
Query: 50 ------------QVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
Q+ F EN QE + ++ FIG LQSNK + +
Sbjct: 91 TTTTTTTPSATQQLHFGENYFQELLE--KSRILPRGIKWHFIGGLQSNKCVSLARDVRGL 148
Query: 98 -------------ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
+ +L ++++ L V++QVNT E KSG+ P T
Sbjct: 149 WAVESVDTEKKAKLLDKGWGERDISALSEEERTQKLRVFVQVNTSGEEAKSGVEPVATPA 208
Query: 145 FVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLL---------SEIARECKLT------- 187
R Q +L ++GLM I + + I + ++
Sbjct: 209 LCRYIREQCPRLKLQGLMTIGAIARSKESTNENADFVSLIETREAIIKALGMSEQEADDF 268
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G+ VR+G+ IFGERP +
Sbjct: 269 ELSMGMSSDFEGAIALGSDQVRVGTTIFGERPVK 302
>gi|306832981|ref|ZP_07466113.1| YggS family pyridoxal phosphate enzyme [Streptococcus bovis ATCC
700338]
gi|304424880|gb|EFM28014.1| YggS family pyridoxal phosphate enzyme [Streptococcus bovis ATCC
700338]
Length = 191
Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
+K VDS + G EN++ K+ K+ + IGSLQ KV +++
Sbjct: 2 TKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEA-LKDRKLTWHLIGSLQRRKVKNVINF 60
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
D + K AS + + + ++QVN E K G ++ + + +
Sbjct: 61 VDYFHALDSIKLASEIQK---RAEHTIKCFLQVNISEEESKHGFKVSEIDEALTAISEFD 117
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLL---SEIARECK--------LTKLSMGMTRDFELAIA 202
++ + GLM + P + + +++ +E + T+LSMGM+ D+++AI
Sbjct: 118 KVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELSMGMSGDYKIAIR 177
Query: 203 SGATSVRIGSGIF 215
+GAT VRIG+ F
Sbjct: 178 NGATFVRIGTSFF 190
>gi|297571031|ref|YP_003696805.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
gi|296931378|gb|ADH92186.1| alanine racemase domain protein [Arcanobacterium haemolyticum DSM
20595]
Length = 230
Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 21/232 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + ++ A R V ++ +K +++ A G V+ N + +
Sbjct: 4 IAESLGRIRDIVDRYAG--GRH---VDIMLATKHQPIERLIEAYDAGGVLMGHNLVDQLV 58
Query: 63 KKWIPLRKEWDVQL-RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ----- 116
L + IG +QSNK+S +++ D I+TV KTA ++ ++
Sbjct: 59 SANAGLAEHGIHPYTSMIGHVQSNKLSSAMTVADRIDTVDSLKTAQRINRRQEERVARGE 118
Query: 117 -SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---------A 166
+ PV IQ+N+ + G+ + ++ + G+M I +
Sbjct: 119 ATGPYPVLIQINSAAADTQFGVAIGDVMQLAVAIADLPRVQIRGVMTIGARGSETNIRAS 178
Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +SMGM+ D LAI+ GAT VR+G+ +FGER
Sbjct: 179 FATTRRLSEEMRTLPALADADVISMGMSNDMHLAISEGATVVRVGTAVFGER 230
>gi|74144222|dbj|BAE22181.1| unnamed protein product [Mus musculus]
Length = 326
Score = 98.3 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 22/216 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ S R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 11 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 70
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQS 117
+ +++ FIG LQ V++++++ ++ + + S + +
Sbjct: 71 ASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQKKGPT 130
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKP 172
L V +Q+NT E K G++P++T V + L GLM I + P P
Sbjct: 131 EPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNP 190
Query: 173 HFYLL----SEIARECKLT----KLSMGMTRDFELA 200
F L E+ + + +LSMGM+ DF+ A
Sbjct: 191 DFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHA 226
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 201 IASGATSVRIGSGIFGERPCQ 221
I G+T+VRIGS IFGER
Sbjct: 285 IEVGSTNVRIGSTIFGERDYS 305
>gi|193785623|dbj|BAG51058.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 20/198 (10%)
Query: 44 VALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
+ + F EN +QE +K + +++ FIG LQ V++++++ ++
Sbjct: 16 ALRAVNERTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLE 75
Query: 101 SREK----TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQL 155
+ + S + L V +Q+NT E K G+ P++T V + L
Sbjct: 76 TVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNL 135
Query: 156 NVEGLMCIPPAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIAS 203
GLM I + P P F LL E+ ++ + +LSMGM+ DF+ A+
Sbjct: 136 EFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEV 195
Query: 204 GATSVRIGSGIFGERPCQ 221
G+T+VRIGS IFGER
Sbjct: 196 GSTNVRIGSTIFGERDYS 213
>gi|115385721|ref|XP_001209407.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187854|gb|EAU29554.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 301
Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 53/231 (22%), Positives = 83/231 (35%), Gaps = 31/231 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L +I +A + RP + L+AVSK+ + I +
Sbjct: 13 TLLANLTSVTSRITAAA-KSDRP---IRLIAVSKLKPASDILALHQPPGGHLHFGENYLQ 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL------------FDVIETVSREKTASLL 109
+ + ++ FIG LQSNK + + +
Sbjct: 69 ELQEKAKLLPASIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDKGWGERSA 128
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD--FVILCRQKYQLNVEGLMCI---- 163
L L V++QVNT E KSG+ P + + +L ++G+M I
Sbjct: 129 ELRASDAEDRLRVFVQVNTSGEENKSGVDPGDGAVALCRFIRDKCPRLRLQGVMTIGAIA 188
Query: 164 ---PPAMGNPKPHFYLLSEIA----RECKLT--KLSMGMTRDFELAIASGA 205
N F L + +E L +LSMGM+ DFE AIA G+
Sbjct: 189 RSKATTPENENEDFLCLRDTRDRVVKELGLEGLELSMGMSEDFEGAIALGS 239
>gi|119583766|gb|EAW63362.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_c [Homo sapiens]
Length = 236
Score = 97.9 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 20/191 (10%)
Query: 51 VIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK--- 104
F EN +QE +K + +++ FIG LQ V++++++ ++ + +
Sbjct: 24 RTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKL 83
Query: 105 -TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMC 162
S + L V +Q+NT E K G+ P++T V + L GLM
Sbjct: 84 ADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMT 143
Query: 163 IPPAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRI 210
I + P P F LL E+ ++ + +LSMGM+ DF+ A+ G+T+VRI
Sbjct: 144 IGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRI 203
Query: 211 GSGIFGERPCQ 221
GS IFGER
Sbjct: 204 GSTIFGERDYS 214
>gi|238021818|ref|ZP_04602244.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
gi|237866432|gb|EEP67474.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
Length = 111
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I++N + K GI P + +LN+ GLMC+ N +++
Sbjct: 1 MLIEINISGDPAKHGIAPEELPALAQAIAPLPRLNLRGLMCVASHTDNSDQLRQQFTQMH 60
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D LAI GAT VRIGS IFG+R
Sbjct: 61 SLLAQLRPHAPQADTLSMGMSSDMNLAIECGATMVRIGSAIFGKRDYP 108
>gi|47207637|emb|CAF90890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 86/205 (41%), Gaps = 22/205 (10%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLF 94
+ A GQ F EN + E K ++Q FIG LQ N V++++ +
Sbjct: 72 PQNLVVEAYRRGQRSFGENYVNELLDKASDPLILGSCPEIQWHFIGHLQKNNVNKLLGVP 131
Query: 95 DVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVI 147
++ + + + L V +QVNT E K G+ P +T
Sbjct: 132 NLHLVETVDSVKLADKVNSSWQRIRGASPQRLKVMVQVNTSGEQSKHGLPPEETVDAVRH 191
Query: 148 LCRQKYQLNVEGLMCIPPAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTR 195
+ L+ GLM I + P P F +L E+ K+ +LSMGM+
Sbjct: 192 ILSHCPALHFSGLMTIGRYGYDLSLGPNPDFQMLLSHRQEVCEALKIPQEEVELSMGMST 251
Query: 196 DFELAIASGATSVRIGSGIFGERPC 220
DFE AI GATSVR+GS IFG R
Sbjct: 252 DFEHAIEVGATSVRVGSIIFGNREY 276
>gi|237756655|ref|ZP_04585165.1| hypothetical protein SULYE_1217 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691187|gb|EEP60285.1| hypothetical protein SULYE_1217 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 126
Score = 96.0 bits (237), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++I+ + + ++ V L+A SK +KI A G F ENK+QE
Sbjct: 1 MSIKENVLKIEERIQKACDKVGKKREEVILLAASKTQPVEKIIEAYESGIRYFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+K D+ IG LQ+NKV V ++ I +V R+ + K ++ +
Sbjct: 61 GIEKIEKLKKYSDIHWHLIGGLQTNKVKYAVKYYESIHSVDRQALVDEIEKRGEKLNKVI 120
Query: 121 PVYIQV 126
I+V
Sbjct: 121 DGLIEV 126
>gi|149247854|ref|XP_001528315.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448269|gb|EDK42657.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 278
Score = 95.6 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 80/246 (32%), Gaps = 45/246 (18%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++ + LVAVSK+ S I + G F EN +QE
Sbjct: 44 LIDNYNAVLKQVHDL-------NPKTRLVAVSKLKPSSDIMALYAAGVRHFGENYVQELV 96
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ FIG +Q K ++ + + V T + +
Sbjct: 97 AKSQE--LPKDICWHFIGGMQLGKAKDLSNKVSNLYAVETIDTFKKCKQLNSTRVKNDGE 154
Query: 123 YIQVNTGYEIQ--------KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH- 173
I V +T F++ ++ +L + GLM I +
Sbjct: 155 IINVYLQVNTSGEEQKSGFIDENDMEETIKFLLNDQECSKLKLAGLMTIGSFAESTGAQG 214
Query: 174 --------FYLLSEIARECKLT-KLSMGMTRDFELAIAS---------GATSVRIGSGIF 215
L ++ + L +LSMGM+ DFE AI IF
Sbjct: 215 ENQDFKKLQELKKKLDEQYSLDLELSMGMSNDFEQAIKQGSSSVRVGS---------SIF 265
Query: 216 GERPCQ 221
G RP +
Sbjct: 266 GARPTK 271
>gi|226328804|ref|ZP_03804322.1| hypothetical protein PROPEN_02704 [Proteus penneri ATCC 35198]
gi|225201990|gb|EEG84344.1| hypothetical protein PROPEN_02704 [Proteus penneri ATCC 35198]
Length = 115
Score = 95.2 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ+N E KSGI + + + GLM IP +
Sbjct: 1 MPPLNVLIQINISDENSKSGISLTELDGLAAQISILSGIKLRGLMAIPAPESKYDKQVEV 60
Query: 177 LSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L ++ + + LSMGMT D E AIA G+T VRIG+ IFG R T
Sbjct: 61 LEKMHLAFKQLQSQYPDIDTLSMGMTSDMEAAIACGSTLVRIGTAIFGARNYAT 114
>gi|221054658|ref|XP_002258468.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808537|emb|CAQ39240.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 242
Score = 94.8 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M N L+ + KI++ ++ V+K V S++I + + +
Sbjct: 1 MKYINNLKEIENKIKSICDNCGVVP--PKILIVTKYVGSEEINN-IHAYDKKYHFGENSL 57
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI------ 114
+ + ++ FIG+LQS K + +L ++ + +K + L
Sbjct: 58 EALEEKAKKLPDTIKWHFIGNLQSKKCKVLANLKNLHMVETLDKQKKAIMLNNYLKSINE 117
Query: 115 ------KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV----ILCRQKYQLNVEGLMCIP 164
Q++ + V +Q+ T + K+GI N D + L +GLM I
Sbjct: 118 TEQRSSNQAKKIRVLMQIKTTDDPNKTGIGHNNYDDIESTILYIINNCEFLIFKGLMTIS 177
Query: 165 PAMGNPKPHFYLL--------------SEIARECKLTKLSMGMTRDFELAIASGATSVRI 210
+ + +++ + R+ K +SMGM+ D ELAI T +RI
Sbjct: 178 SLEIANRENSFVILNDIKSRLLSNAVIRDYFRDRKF-HMSMGMSGDLELAIKHRTTQLRI 236
Query: 211 GSGIFG 216
GS IFG
Sbjct: 237 GSAIFG 242
>gi|283470399|emb|CAQ49610.1| protein YlmE [Staphylococcus aureus subsp. aureus ST398]
Length = 168
Score = 94.8 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 14/169 (8%)
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 1 MEGFFQKKEALPSDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINK---RAEHK 57
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K GI F+ ++ ++ + GLM + P + L +
Sbjct: 58 IKCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQ 117
Query: 180 IA------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + L +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 118 LRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 166
>gi|311087925|gb|ADP68004.1| hypothetical protein CWU_03555 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 200
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+++VAVSK + I A+ G F EN LQE+ K L+K ++ FIG +QSN
Sbjct: 2 KKITIVAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K +I F +TV REK A LL+ K + V IQ+N E+Q + +Q ++
Sbjct: 62 KTKKIAQNFSWCQTVDREKIAVLLNKFRPKNLPPINVLIQINNLKELQNNRY-IDQYQEL 120
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-----LTKLSMGMTRDF 197
L LN+ G+M +P N + + I K + LS+G + D
Sbjct: 121 AQLILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDI 180
Query: 198 ELAIASGATSVRIGSGIF 215
+ ++ + + VRIG IF
Sbjct: 181 KESLLATSNMVRIGRNIF 198
>gi|15617142|ref|NP_240355.1| hypothetical protein BU549 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681894|ref|YP_002468280.1| hypothetical protein BUAP5A_542 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682449|ref|YP_002468833.1| hypothetical protein BUAPTUC7_543 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471599|ref|ZP_05635598.1| hypothetical protein BaphL_02730 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11387310|sp|P57614|Y549_BUCAI RecName: Full=UPF0001 protein BU549
gi|25403647|pir||A84994 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10039207|dbj|BAB13241.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219622182|gb|ACL30338.1| hypothetical protein BUAPTUC7_543 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624737|gb|ACL30892.1| hypothetical protein BUAP5A_542 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086270|gb|ADP66352.1| hypothetical protein CWO_02885 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086845|gb|ADP66926.1| hypothetical protein CWQ_02920 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087434|gb|ADP67514.1| hypothetical protein CWS_02830 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 200
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 9/198 (4%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++++AVSK + I A+ G F EN LQE+ K L+K ++ FIG +QSN
Sbjct: 2 KKITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K +I F +TV REK A LL+ K + V IQ+N E+Q + +Q ++
Sbjct: 62 KTKKIAQNFSWCQTVDREKIAVLLNKFRPKNLPPINVLIQINNLKELQNNRY-IDQYQEL 120
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-----LTKLSMGMTRDF 197
L LN+ G+M +P N + + I K + LS+G + D
Sbjct: 121 AQLILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDI 180
Query: 198 ELAIASGATSVRIGSGIF 215
+ ++ + + VRIG IF
Sbjct: 181 KESLLATSNMVRIGRNIF 198
>gi|71030978|ref|XP_765131.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352087|gb|EAN32848.1| hypothetical protein, conserved [Theileria parva]
Length = 215
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+ V+K I GQ+ F E++++E +K L V+ FIG LQ+NK
Sbjct: 19 VELLVVTKNCTVDAIGQLFKMGQLDFGESRVRELCEKAAQLDST--VKWHFIGHLQTNKC 76
Query: 88 SE--IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
++ + +I++V + + LS K +R + V IQVNT + + GI
Sbjct: 77 AKLLQIPNLHMIQSVDSMELFNKLSQLTTKLNRQINVLIQVNTTLKPTQYGIDYRNITLI 136
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT-------KLSMGMTRDFE 198
+ L R + + K F+ L+ + + + +SMGM+ D++
Sbjct: 137 ISLVRSVMRSERVKFRGLMTIGDGTKDSFHRLNGVKKRLEEEFGELGEFVMSMGMSSDYK 196
Query: 199 LAIASGATSVRIGSGIF 215
LAI G+ +RIG+ IF
Sbjct: 197 LAIQMGSNHIRIGTLIF 213
>gi|326932746|ref|XP_003212474.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Meleagris gallopavo]
Length = 215
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 53 FAENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----T 105
F EN +QE +K R +++ FIG LQ + V++++++ ++ + +
Sbjct: 3 FGENYVQELLEKASDSRILSSCPEIKWHFIGHLQKSNVNKLIAVPNLFMLETVDSVKLAD 62
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIP 164
S + + L V +QVNT E K G+ P T V + L GLM I
Sbjct: 63 RVNSSWQKKGSPQKLKVMVQVNTSGEDSKHGLPPRDTAAAVEHVINKCPSLEFVGLMTIG 122
Query: 165 PAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
+ P P F +L E+ + L +LSMGM+ DF+ AI G+T+VRIGS
Sbjct: 123 SIGHDLSKGPNPDFQVLLSLRQEVCEKLNLPIEKVELSMGMSTDFQHAIEVGSTNVRIGS 182
Query: 213 GIFGERPCQ 221
IFGER
Sbjct: 183 TIFGERDYS 191
>gi|296221991|ref|XP_002756996.1| PREDICTED: proline synthetase co-transcribed bacterial homolog
protein-like [Callithrix jacchus]
Length = 236
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 51 VIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK--- 104
F EN +QE +K + +++ FIG LQ V++++++ ++ + +
Sbjct: 24 RTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKL 83
Query: 105 -TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMC 162
S + L V +Q+NT E K G+ P++T V L GLM
Sbjct: 84 ADKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINTNCPSLEFVGLMT 143
Query: 163 IPPAMGN----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRI 210
I + P P F LL + E KL+ +LSMGM+ DF+ AI G+T+VRI
Sbjct: 144 IGSVGHDLSQGPNPDFQLLLSLREELCKKLSIPADQVELSMGMSMDFQHAIEVGSTNVRI 203
Query: 211 GSGIFGERPCQ 221
GS IFGER
Sbjct: 204 GSTIFGERDYS 214
>gi|213417290|ref|ZP_03350434.1| hypothetical protein Salmonentericaenterica_04992 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 108
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
E K + K + FIG LQSNK + FD T+ R
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDR 105
>gi|156097392|ref|XP_001614729.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803603|gb|EDL45002.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 242
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M N L+ + KI++ + L+A SK V S++I + + +
Sbjct: 1 MKYINNLKEIENKIKSICDSCGAAPPKI-LIA-SKYVGSEEINN-IHVYDKKYHFGENSL 57
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET------------VSREKTASL 108
+ + ++ FIG+LQS K + +L ++ + K+ +
Sbjct: 58 EALEEKARQLPDTIKWHFIGNLQSKKCKVLANLKNLHMVESLDKQKKATLLNNYLKSINE 117
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV----ILCRQKYQLNVEGLMCIP 164
Q + + V +Q+ T ++ K+GI +Q D + L +GLM I
Sbjct: 118 NEQRSSDQVKKIRVLMQIKTTDDLNKTGIAHSQYDDIESTILYIINNCEFLIFKGLMTIS 177
Query: 165 PAMGNPKPHFYLL--------------SEIARECKLTKLSMGMTRDFELAIASGATSVRI 210
+ + + +++ + R+ K +SMGM+ D ELAI T +RI
Sbjct: 178 SLEPSSRENSFVILNDIKSRLLSNTAIRDYFRDRKF-HMSMGMSGDLELAIKHRTTQLRI 236
Query: 211 GSGIFG 216
GS IFG
Sbjct: 237 GSAIFG 242
>gi|213028404|ref|ZP_03342851.1| hypothetical protein Salmonelentericaenterica_41345 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 119
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + KI +A R + V+L+AVSK + I A++ GQ F EN +Q
Sbjct: 1 MNDIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQ 60
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
E K + K + FIG LQSNK + FD T+ R
Sbjct: 61 EGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDR 105
>gi|266625686|ref|ZP_06118621.1| YlmE protein [Clostridium hathewayi DSM 13479]
gi|288862406|gb|EFC94704.1| YlmE protein [Clostridium hathewayi DSM 13479]
Length = 103
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++I + A R ++ V+L+AVSK + A G F ENK+QE
Sbjct: 2 VKENLEEVNRRISEACRRAGRNREDVTLIAVSKTKPVSMLEEAYETGIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
+K + D++ IG LQ NKV +++ +I +V
Sbjct: 62 EKHE--VLQSDIRWHMIGHLQRNKVRQVIDKTVLIHSVDS 99
>gi|66357680|ref|XP_626018.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46227312|gb|EAK88262.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 245
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAEN 56
MS + + K +I+ + + L+ VSK + I++ Q IF EN
Sbjct: 8 MSENEVIDNYMKIKNQIKELCSGFESFPE---LLVVSKYQSEENIKLLHEKTDQKIFGEN 64
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT---ASLLSLEM 113
+QE + ++ FIG LQSNKV ++S+ ++ + + L
Sbjct: 65 YVQELME--KSRNLPKSIKWHFIGHLQSNKVKTLLSIDNLEVIETVDSIKLAQVLNKECQ 122
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPK 171
++ L V IQV T E+ KSG ++ + + L +GLM + +
Sbjct: 123 LQGRSVLKVMIQVKTSNEVNKSGAQISEAINIFEYIISECRNLKFQGLMTMGDSDVNLTS 182
Query: 172 PHFYLLSEIARECKLTK-------------LSMGMTRDFELAIASGATSVRIGSGIFG 216
F + + LSMG TRD E+AI + VRIGS IFG
Sbjct: 183 ECFNKMVNLRNIINEKISKNGNYDQSIECRLSMGTTRDMEIAIKNHTNEVRIGSAIFG 240
>gi|257483588|ref|ZP_05637629.1| hypothetical protein PsyrptA_10058 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 86
Score = 93.3 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 157 VEGLMCIPPAMGNPKPHFYLL---SEIARECKL--TKLSMGMTRDFELAIASGATSVRIG 211
+ GLM IP +P + + L LSMGM+ D E AIA GAT VRIG
Sbjct: 15 LRGLMAIPEPTDDPAAQHASFAAVRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIG 74
Query: 212 SGIFGERPC 220
+ +FG R
Sbjct: 75 TALFGARDY 83
>gi|167847187|ref|ZP_02472695.1| hypothetical protein BpseB_18072 [Burkholderia pseudomallei B7210]
Length = 89
Score = 92.9 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 153 YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASG 204
L + GLM IP +P + L + + + L LSMGM+ D E A+A G
Sbjct: 12 PALRLRGLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEG 71
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIG+ IFG R
Sbjct: 72 ATIVRIGTAIFGARDY 87
>gi|67594591|ref|XP_665811.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656651|gb|EAL35580.1| hypothetical protein Chro.50329 [Cryptosporidium hominis]
Length = 238
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 59/238 (24%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAEN 56
MS + + K +I+ + + L+ VSK + I++ Q IF EN
Sbjct: 1 MSENEVIDNYMKIKNQIKELCSDFESFPE---LLVVSKYQSEENIKLLHEKTDQKIFGEN 57
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT---ASLLSLEM 113
+QE + ++ FIG LQSNKV ++S+ ++ + + L
Sbjct: 58 YVQELME--KSRNLPKSIKWHFIGHLQSNKVKTLLSIDNLEVIETVDSIKLAQVLNKECQ 115
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPK 171
++ L V IQV T E+ KSG ++ + + L +GLM + +
Sbjct: 116 LQGRSVLKVMIQVKTSNEVNKSGAKISEALNIFEYIISECRNLKFQGLMTMGDSDVNLTS 175
Query: 172 PHFYLLSEIARECKLTK-------------LSMGMTRDFELAIASGATSVRIGSGIFG 216
F + + LSMG TRD E+AI + +RIGS IFG
Sbjct: 176 ECFNKMVNLRNIINEKISKNGNYDQSIECRLSMGTTRDMEIAIKNHTNEIRIGSAIFG 233
>gi|68065758|ref|XP_674863.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493711|emb|CAH99590.1| conserved protein, putative [Plasmodium berghei]
Length = 242
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQ-VIFAENKLQ 59
M N ++ + KIE R ++ VSK V ++I S + F EN
Sbjct: 1 MKHINNIKNIENKIEKICQDTCRIP--PKILIVSKYVGHEEINNIHSYEKKYHFGENNFD 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET------------VSREKTAS 107
+K L + FIG++QSNK I+ + ++ S T +
Sbjct: 59 SLIEKSQKLPNTI--KWHFIGNIQSNKCKNILKVPNLYMIESLDKQKKASLLNSYLNTIN 116
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV----ILCRQKYQLNVEGLMCI 163
+ L V +Q+ T + K+G+M + +D + L +GLM I
Sbjct: 117 ENEENNNDNLKKLRVLVQIKTTDDPNKTGMMHDNYEDIENTVLYIINNCNLLIFKGLMTI 176
Query: 164 PPAMGNPKPHFYL-LSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRI 210
N + + ++ L++I + K +SMGM+ D ELAI + T +RI
Sbjct: 177 SSLDINNRENSFIILNDIKNKLLNNQTISNYFQNKKFHMSMGMSDDLELAIKNNTTQLRI 236
Query: 211 GSGIFG 216
G IFG
Sbjct: 237 GRAIFG 242
>gi|226328802|ref|ZP_03804320.1| hypothetical protein PROPEN_02702 [Proteus penneri ATCC 35198]
gi|225201988|gb|EEG84342.1| hypothetical protein PROPEN_02702 [Proteus penneri ATCC 35198]
Length = 111
Score = 92.1 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + I+ A R + ++L+AVSK + I A++CGQ F EN +QE
Sbjct: 3 TIKQNLVNVRSHIDTVAQKCGRSSEEITLLAVSKTKPASDIEKAIACGQTEFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
K + FIG LQSNK + FD T+ R
Sbjct: 63 VDKIHYFADNHTLVWHFIGPLQSNKTRLVAENFDWCHTIDR 103
>gi|164686340|ref|ZP_02210370.1| hypothetical protein CLOBAR_02778 [Clostridium bartlettii DSM
16795]
gi|164601942|gb|EDQ95407.1| hypothetical protein CLOBAR_02778 [Clostridium bartlettii DSM
16795]
Length = 116
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ +QVN E K G+ + + ++ + + + GLM + P + + + +
Sbjct: 1 MIDCLVQVNISKEETKHGLYKDDVVEFIKMVSEKYKNIRIRGLMTMAPFVDDEEVIESVF 60
Query: 178 SEIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LSMGM+ D+ +AI +GAT VR+G+ IFG R
Sbjct: 61 KGLKDLSLEVESLGLENVYMNTLSMGMSHDYHIAIKNGATIVRVGTAIFGPRNYN 115
>gi|167721106|ref|ZP_02404342.1| hypothetical protein BpseD_19006 [Burkholderia pseudomallei DM98]
Length = 75
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 156 NVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATS 207
+ GLM IP +P + L + + + L LSMGM+ D E A+A GAT
Sbjct: 1 RLRGLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATI 60
Query: 208 VRIGSGIFGERPC 220
VRIG+ IFG R
Sbjct: 61 VRIGTAIFGARDY 73
>gi|167837776|ref|ZP_02464659.1| hypothetical protein Bpse38_14902 [Burkholderia thailandensis
MSMB43]
Length = 84
Score = 91.3 bits (225), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 153 YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASG 204
L + GLM IP +P + L + + + L LSMGM+ D E A+A G
Sbjct: 7 PALRLRGLMAIPEPATDPEAKRAPHRALHALLEQLRAGGLALDTLSMGMSDDLEAAVAEG 66
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIG+ IFG R
Sbjct: 67 ATIVRIGTAIFGARDY 82
>gi|255522107|ref|ZP_05389344.1| hypothetical protein LmonocFSL_12975 [Listeria monocytogenes FSL
J1-175]
Length = 118
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 52/102 (50%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
++K + L + D+ +IGSLQ+ KV +++ D + ++ R
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR 102
>gi|213024386|ref|ZP_03338833.1| hypothetical protein Salmonelentericaenterica_18511 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 96
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFELAIASG 204
+L + GLM IP + F + ++A R + LS+GM+ D E AIA+G
Sbjct: 18 PRLRLRGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAG 77
Query: 205 ATSVRIGSGIFGERPC 220
+T VRIG+ IFG R
Sbjct: 78 STMVRIGTAIFGARDY 93
>gi|167537654|ref|XP_001750495.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771035|gb|EDQ84709.1| predicted protein [Monosiga brevicollis MX1]
Length = 208
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 70 KEWDVQLRFIGSLQSNKVSE--IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
D++ FIG LQ NKV + V ++ETVS +K A L+ +Q R + V IQVN
Sbjct: 39 CPEDIEWHFIGHLQRNKVKQLAAVQGLAMVETVSSQKLADALNKTFAEQERTVSVLIQVN 98
Query: 128 TGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI-------------PPAMGNPKPH 173
T E K G++ ++ L + GLM I P +
Sbjct: 99 TSREENKHGVLEDEVVAVAKHITASCPALRLCGLMTIGNLEQSLAPEETNPDFETLVRCR 158
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ SE+ R+ + +LSMGM+ D+E AI G+T+VR+GS IFG R
Sbjct: 159 AAVASELGRDAEELELSMGMSSDYETAIRQGSTNVRVGSTIFGARHY 205
>gi|293189598|ref|ZP_06608317.1| alanine racemase domain protein [Actinomyces odontolyticus F0309]
gi|292821498|gb|EFF80438.1| alanine racemase domain protein [Actinomyces odontolyticus F0309]
Length = 187
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 44 VALSCG-QVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
G ++ N++QEA+ +R+ ++ IG LQSNK++ ++ D IE++
Sbjct: 2 ALREAGLPILLGHNRVQEARATAEAIREVPGARIHLIGPLQSNKINHALACVDAIESLDS 61
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
AS + LPV+++VN E K G P V + L + G M
Sbjct: 62 PALASKIDARTTG---TLPVFVEVNVSGEATKHGCAPADVSALVDVVGASAHLQLAGFMT 118
Query: 163 IP---PAMGNPKPHFYLLSEIARE----CKLTK----LSMGMTRDFELAIASGATSVRIG 211
+ P + + + L I E + + LSMGM+RD E AIA GAT VR+G
Sbjct: 119 VGLNSPVEADVRAAYAQLRGIRDEAAAHLGINESDLALSMGMSRDLEWAIAEGATIVRLG 178
Query: 212 SGIFGER 218
+ IFG R
Sbjct: 179 TAIFGAR 185
>gi|116783162|gb|ABK22817.1| unknown [Picea sitchensis]
Length = 218
Score = 90.6 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 7/180 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++++ +A + R V +VAVSK IR G F EN +QE K
Sbjct: 9 LRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKAP 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----KQSRFLPV 122
D+Q FIG LQSNK +++ + V ++ + + + L V
Sbjct: 69 E--LPTDIQWHFIGHLQSNKAKAVIAGVPNLYMVESVDSSKVANHLDRAVSSIGRKPLKV 126
Query: 123 YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+QVNT E K G+ P++ + + Q L GLM I + +P + ++E+
Sbjct: 127 LVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEVAELK 186
>gi|228987045|ref|ZP_04147170.1| hypothetical protein bthur0001_37190 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772639|gb|EEM21080.1| hypothetical protein bthur0001_37190 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ FIGSLQ+ KV EI++ D + ++ R A + + + + +IQV T E
Sbjct: 1 MNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEES 57
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL- 186
K G+ +T F+ ++ ++ V GLM + P E+ +E +L
Sbjct: 58 KQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEGEIRRCFKELRMLQAEVQELELL 117
Query: 187 ----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 118 HAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 152
>gi|229157479|ref|ZP_04285556.1| hypothetical protein bcere0010_36610 [Bacillus cereus ATCC 4342]
gi|228625929|gb|EEK82679.1| hypothetical protein bcere0010_36610 [Bacillus cereus ATCC 4342]
Length = 153
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ FIGSLQ+ KV EI++ D + ++ R A + + + + +IQV T E
Sbjct: 1 MNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQK---RADKKVKCFIQVKTSSEES 57
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL- 186
K G+ +T F+ ++ ++ V GLM + P + E+ +E +L
Sbjct: 58 KQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQAEVQELELL 117
Query: 187 ----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 118 HAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 152
>gi|221117858|ref|XP_002154810.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Hydra magnipapillata]
Length = 174
Score = 89.8 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS----REKTASLLSLEMIKQSRFLP 121
D++ FIGSLQ NKV+ ++ + ++ + + A S L
Sbjct: 5 HQNLGYNDIRWHFIGSLQRNKVNNLLDVENLFAVHTVGSIKLADALDKSWAKKNTGTQLN 64
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP----PAMGNPKPHFYL 176
V+IQVNT E K G PN+ L++ GLM I P P F
Sbjct: 65 VFIQVNTSAEENKGGCEPNECVSLAKHILNSCKSLSLYGLMTIGLFDYDYSQGPNPDFLC 124
Query: 177 LSEIARE----CKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS+ ++ C + + LSMGM+ D++ AI++G+T VRIGS IFG R
Sbjct: 125 LSKCRQDVCTSCGIEENNLMLSMGMSNDYQEAISAGSTHVRIGSLIFGAR 174
>gi|289640980|ref|ZP_06473150.1| alanine racemase domain protein [Frankia symbiont of Datisca
glomerata]
gi|289509295|gb|EFD30224.1| alanine racemase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 321
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 83/253 (32%), Gaps = 60/253 (23%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCG----------------------------QVIFAENK 57
D ++L+AVSK + + + G
Sbjct: 65 DELTLIAVSKNWPASDVVLLAGSGVTHFAENREQEARAKVAAVTKYLVAHESCRELDSEV 124
Query: 58 LQEAKKKWIPLRKEWD------------------------VQLRFIGSLQSNKVSEIVSL 93
+ E D F+G LQ NK +
Sbjct: 125 SSAWRPSAPQTAPEGDDGQPPRPDPAAAPAAGPGASFGSWPCWHFVGQLQRNKARPVARW 184
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN---TGYEIQKSGIMPNQTKDFVILCR 150
+++V R + L+ + R + V +QV+ G + + G P L
Sbjct: 185 AGWVQSVDRAPLVNALAAGALAHDREIVVCLQVSLDPPGCDTGRGGARPADVLALGDLVA 244
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGA 205
L + G+M + P +P F L E+ + + +S GM+ DF A+A GA
Sbjct: 245 ASRGLVLAGVMGVAPRGLPARPAFARLREVSWMLRREHPEASVISAGMSADFPDAVAEGA 304
Query: 206 TSVRIGSGIFGER 218
T +RIG+ +FG R
Sbjct: 305 THLRIGTALFGPR 317
>gi|167825701|ref|ZP_02457172.1| hypothetical protein Bpseu9_18662 [Burkholderia pseudomallei 9]
Length = 66
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 167 MGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 6 PEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 64
>gi|257483589|ref|ZP_05637630.1| hypothetical protein PsyrptA_10063 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 137
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQ
Sbjct: 1 MSTIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + + + FIG +QSNK I F + +V R K A LS + +
Sbjct: 61 EALGKQLE-LSDLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGI 137
L + IQVN E KSG
Sbjct: 120 LNICIQVNVSGEASKSGC 137
>gi|325115060|emb|CBZ50616.1| hypothetical protein NCLIV_010840 [Neospora caninum Liverpool]
Length = 326
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 43/310 (13%), Positives = 86/310 (27%), Gaps = 91/310 (29%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD------------------SVSLVAVSKMVDS----- 39
+ LQ + ++ A P V ++AVSK +
Sbjct: 12 IRENLQRVRGEVRALASRHAPPSASSPSATSSAATGAAAGRLKVRILAVSKHHPAAAVAA 71
Query: 40 ---------------KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ + A ++ + + + + +L + ++ S
Sbjct: 72 AAQAGQRHFGENYVQELVDKAAQLRELDLEWHMIGHLQSNKVKQLLTACPRLYAVETVDS 131
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI----MPN 140
K+++ ++ R + +++ ++++ +
Sbjct: 132 KKLAKTLNDAAAAVLPQRNGAPLRVLVQVNASDEESKSGVRLHANDNPDEKTAGTSGDSA 191
Query: 141 QTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIA-RECKLT----------- 187
+ + L GLM I P F L+++ +L
Sbjct: 192 VRELVEYIIDSCPHLRFSGLMTIGDPDPERTPGTFAKLAKLRLDLLELPRVRQVFAPRAE 251
Query: 188 ------------------------------------KLSMGMTRDFELAIASGATSVRIG 211
+LSMGM+ D AI G+T VRIG
Sbjct: 252 NVHGRAEGKRAVQAEPPEGNEHCGDSDAERDTDERFELSMGMSGDMAEAIKHGSTEVRIG 311
Query: 212 SGIFGERPCQ 221
+ IFG RP Q
Sbjct: 312 TAIFGSRPAQ 321
>gi|124506942|ref|XP_001352068.1| Pyridoxal 5'-phosphate dependent enzyme class III, putative
[Plasmodium falciparum 3D7]
gi|23505097|emb|CAD51879.1| Pyridoxal 5'-phosphate dependent enzyme class III, putative
[Plasmodium falciparum 3D7]
Length = 242
Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 33/244 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQ 59
M N L+ +QK++ ++ V+K V ++I S + F EN +
Sbjct: 2 MKYINNLKEIEQKVKRICDHFSVNSPD--ILIVTKYVGKEEIHNIHSLDNKYHFGENSVD 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----------SREKTASL 108
+K +++ FIG+LQSNK I+ + ++ +
Sbjct: 60 SLIEKSEQ--LAKNIKWHFIGNLQSNKCKNILKVKNLYMIETLDKEKKATLLNNYLKIEN 117
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV----ILCRQKYQLNVEGLMCIP 164
++ R L V +Q+ T + K+G+ + + L +GLM I
Sbjct: 118 ELNNNNEELRKLCVLMQIKTTDDETKTGLTHQNYDEIENTVLHIINNCQFLIFKGLMTIS 177
Query: 165 PAMGNPKPHFY-LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIG 211
N + + + +L++I R+ K +SMGM+ D ELAI T +RIG
Sbjct: 178 SLDINKRENSFVILNDIKRKLLSNQVINNYFLNKTFHMSMGMSDDMELAIKHETTQLRIG 237
Query: 212 SGIF 215
IF
Sbjct: 238 RAIF 241
>gi|56541811|emb|CAD29783.1| putative proline synthetase associated protein [Oryza sativa]
Length = 220
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 16/199 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 10 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----QSRFLPV 122
D++ FIG+LQSNK +++ ++ V + + + L V
Sbjct: 70 Q--LPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 127
Query: 123 YIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL---- 177
+QVNT E K G+ P+ + + L GLM I + P +
Sbjct: 128 LVQVNTSGEESKFGVNPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANC 187
Query: 178 -SEIARECKL----TKLSM 191
E+ +E + +LSM
Sbjct: 188 RKEVCKELGIXXEQCELSM 206
>gi|167895772|ref|ZP_02483174.1| hypothetical protein Bpse7_18671 [Burkholderia pseudomallei 7894]
Length = 48
Score = 87.1 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 10 LALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 46
>gi|331084010|ref|ZP_08333117.1| hypothetical protein HMPREF0992_02041 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402372|gb|EGG81942.1| hypothetical protein HMPREF0992_02041 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 59
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 18 FDNVTMDVLSMGMTGDYEVAIEEGATHVRVGTGIFGERNY 57
>gi|255971452|ref|ZP_05422038.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1]
gi|255962470|gb|EET94946.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1]
Length = 121
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++VN E K G F+ ++ + GLM + P + + E+
Sbjct: 13 RCFVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFREL 72
Query: 181 ARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+E ++T +LSMGM+ DF +A+ GAT +RIG+ +F R
Sbjct: 73 -KELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF--RDA 121
>gi|294779252|ref|ZP_06744656.1| conserved domain protein [Enterococcus faecalis PC1.1]
gi|294453619|gb|EFG22017.1| conserved domain protein [Enterococcus faecalis PC1.1]
Length = 119
Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++VN E K G F+ ++ + GLM + P + + E+
Sbjct: 11 RCFVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFREL 70
Query: 181 ARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+E ++T +LSMGM+ DF +A+ GAT +RIG+ +F R
Sbjct: 71 -KELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF--RDA 119
>gi|289804088|ref|ZP_06534717.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 50
Score = 84.8 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 8 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 47
>gi|167740076|ref|ZP_02412850.1| hypothetical protein Bpse14_18588 [Burkholderia pseudomallei 14]
Length = 44
Score = 84.4 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 6 LALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 42
>gi|213582384|ref|ZP_03364210.1| hypothetical protein SentesTyph_14771 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 58
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 16 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 55
>gi|34762614|ref|ZP_00143607.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887694|gb|EAA24770.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 78
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGMTRDFE 198
+ LN+ G+M + P + K + SE+ + LT+LSMGM+ D++
Sbjct: 1 MQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKGELNKEYFNNNLTELSMGMSNDYK 60
Query: 199 LAIASGATSVRIGSGIF 215
+A+ G+T +R+G+ IF
Sbjct: 61 IALQEGSTFIRVGTKIF 77
>gi|213618819|ref|ZP_03372645.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 60
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 18 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 57
>gi|213421344|ref|ZP_03354410.1| hypothetical protein Salmonentericaenterica_27899 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 53
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 11 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 50
>gi|329574346|gb|EGG55918.1| hypothetical protein HMPREF9520_01968 [Enterococcus faecalis
TX1467]
Length = 104
Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+N E K G F+ ++ + GLM + P + + E+ +E +
Sbjct: 1 MNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFREL-KELQ 59
Query: 186 LT------------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+T +LSMGM+ DF +A+ GAT +RIG+ +F R
Sbjct: 60 MTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF--RDA 104
>gi|237841025|ref|XP_002369810.1| proline synthetase co-transcribed protein, putative [Toxoplasma
gondii ME49]
gi|211967474|gb|EEB02670.1| proline synthetase co-transcribed protein, putative [Toxoplasma
gondii ME49]
Length = 350
Score = 81.7 bits (200), Expect = 7e-14, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L L +LSMGM+ D AI G+T VRIG+ IFG RP
Sbjct: 301 LHAAFDRDDLFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRP 343
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 34/133 (25%)
Query: 3 LGNKLQVFKQKIE--------------------------------NSAILAKRPKDS-VS 29
+ L+ +++I +S A R + V
Sbjct: 12 IRENLKRVREEILTLSVRRSVAPSAVNDKGNDAKTDSACSSLPSWSSCEGALRETEGCVR 71
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + + A GQ F EN +QE +K D++ IG LQSNK +
Sbjct: 72 LLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQ-LCHLDLKWHMIGHLQSNKAKQ 130
Query: 90 IVSLFDVIETVSR 102
++ + V
Sbjct: 131 LLMGCPQLYAVET 143
>gi|221483679|gb|EEE21991.1| proline synthetase associated protein, putative [Toxoplasma gondii
GT1]
Length = 349
Score = 81.7 bits (200), Expect = 8e-14, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L L +LSMGM+ D AI G+T VRIG+ IFG RP
Sbjct: 300 LHAAFDRDDLFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRP 342
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 33/132 (25%)
Query: 3 LGNKLQVFKQKIE-------------------------------NSAILAKRPKDS-VSL 30
+ L+ +++I +S A R + V L
Sbjct: 12 IRENLKRVREEILTLSVRRSVAPSAVNDKGNDAKTDSACSLPSWSSCEGALRETEGCVRL 71
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK + + A GQ F EN +QE +K D++ IG LQSNK ++
Sbjct: 72 LAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQ-LCHLDLKWHMIGHLQSNKAKQL 130
Query: 91 VSLFDVIETVSR 102
+ + V
Sbjct: 131 LMGCPQLYAVET 142
>gi|221504298|gb|EEE29973.1| proline synthetase associated protein, putative [Toxoplasma gondii
VEG]
Length = 350
Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L L +LSMGM+ D AI G+T VRIG+ IFG RP
Sbjct: 301 LHAAFDRDDLFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRP 343
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 34/133 (25%)
Query: 3 LGNKLQVFKQKIE--------------------------------NSAILAKRPKDS-VS 29
+ L+ +++I +S A R + V
Sbjct: 12 IRENLKRVREEILTLSVRRSVAPSAVNDKGNDAKTDSACSSLPSWSSCEGALRETEGCVR 71
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + + A GQ F EN +QE +K D++ IG LQSNK +
Sbjct: 72 LLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQ-LCHLDLKWHMIGHLQSNKAKQ 130
Query: 90 IVSLFDVIETVSR 102
++ + V
Sbjct: 131 LLMGCPQLYAVET 143
>gi|261884824|ref|ZP_06008863.1| hypothetical protein CfetvA_06189 [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 199
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 21/200 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L KI S L+AVSK V ++ + GQ+ F EN++QE K+
Sbjct: 2 RLDEILSKI-----------GSTKLIAVSKNVTENEVLELYNQGQIDFGENRVQEL-KRK 49
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ K+ ++ FIG LQ+NK++ +++L + ++ S+ + LP +Q
Sbjct: 50 KEILKDLNLNWHFIGRLQANKINHLLALHPNLW--QSCESFSMAEAVDKRLDYILPTLLQ 107
Query: 126 VNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------S 178
+N+ +E K G+ PN ++F+ + + LN+ G+M I + K
Sbjct: 108 INSAHEESKQGVDPNAACEEFLRIKQSCKNLNLIGVMSIGAHSDDIKEIQKSFESTYKIY 167
Query: 179 EIARECKLTKLSMGMTRDFE 198
E +E SMGM+ D+E
Sbjct: 168 ENLQEHGAKICSMGMSSDYE 187
>gi|258615779|ref|ZP_05713549.1| hypothetical protein EfaeD_08714 [Enterococcus faecium DO]
Length = 135
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+
Sbjct: 62 EKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKEL---SC 118
Query: 123 YIQVNTGYEIQKSGIMP 139
+I+VN E K GI P
Sbjct: 119 FIEVNVSGEESKHGISP 135
>gi|328872372|gb|EGG20739.1| hypothetical protein DFA_00602 [Dictyostelium fasciculatum]
Length = 229
Score = 81.3 bits (199), Expect = 9e-14, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 19/201 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + K KI N +V+LVAVSK S IR GQ F EN +QE
Sbjct: 29 DLVTRYDAIKSKITN---------PNVTLVAVSKTKPSFMIRALYEHGQRHFGENYIQEL 79
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS-REKTASLLSLEMIKQSRFL 120
+ K L D++ FIGS+QSNK+ + ++ + + +++ + + +
Sbjct: 80 QTKSDELSDLVDIKWHFIGSIQSNKLKLLETVKSLHVIETIEKQSTADKLAKSWPHQTPI 139
Query: 121 PVYIQVNTGYEIQKSGIMP----NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ +QVNT E KSG P N K + + K +L V GLM I +P +
Sbjct: 140 NIMVQVNTSGEDSKSGCEPGEIVNIVKHLITDEKCKQKLKVIGLMTIGSPNASPDQPDFK 199
Query: 177 -----LSEIARECKLTKLSMG 192
I++E + K S+G
Sbjct: 200 KLVECKENISKELGIDKESIG 220
>gi|167837775|ref|ZP_02464658.1| hypothetical protein Bpse38_14897 [Burkholderia thailandensis
MSMB43]
Length = 145
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + ++I+++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARFASVHRRIDDAARAAGRDPRAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + TV R K A LS +
Sbjct: 61 ESIDKIDTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTVDRLKIAQRLSGQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|227202822|dbj|BAH56884.1| AT1G11930 [Arabidopsis thaliana]
Length = 121
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ Q++ +A A R D + +VAVSK IR GQ F EN +QE +
Sbjct: 27 LRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIE--K 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS 92
+ D++ FIG+LQSNKV ++
Sbjct: 85 APQLPEDIEWHFIGNLQSNKVKPLLC 110
>gi|46107884|ref|XP_381001.1| hypothetical protein FG00825.1 [Gibberella zeae PH-1]
Length = 191
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCI-------PPAMGNPKP 172
V++QVNT E KSG P + + N+ GLM I
Sbjct: 68 VHVQVNTSGEESKSGCAPGDDTVALCREIIETCSNLRLLGLMTIGAIARSKATTPETENE 127
Query: 173 HFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E +A+E L +LSMGM+ DFE A+ G++ VR+GS IFG+RP +
Sbjct: 128 DFVSLKEQRDLVAKELGLDPESLELSMGMSEDFEGAVRLGSSEVRVGSTIFGQRPAK 184
>gi|313223168|emb|CBY43394.1| unnamed protein product [Oikopleura dioica]
Length = 170
Score = 79.4 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D++ FIGS+Q ++ I+ +++ + + ++ + + + + +Q NT
Sbjct: 2 CPDIRFHFIGSIQKKNINSIIKAPNLVGIQTL-ASMDIIENVDKRLTSSVNIMLQCNTSG 60
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCI--------PPAMGNPKPHFYLLSEI 180
E K G + + + ++ GLM I P F L E+
Sbjct: 61 EENKGGFLEEEELFRAAEFVKNESNFMKLEGLMTIGSVENSKRAAEENIPNADFTRLHEL 120
Query: 181 AREC--KLTK------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +L LSMGM+ D+ AI GA+ +R+GS IFG R
Sbjct: 121 RQKVAERLKISPDELSLSMGMSTDYLAAIEQGASVIRVGSKIFGARNY 168
>gi|258615780|ref|ZP_05713550.1| hypothetical protein EfaeD_08719 [Enterococcus faecium DO]
Length = 88
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 152 KYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECKLT--------KLSMGMTRDFELA 200
++ V GLM + P F L E+ + +LSMGM++DF++A
Sbjct: 11 CTKIKVVGLMTMAPKEASDEQIHKVFGTLKELRDLVQAKGYAHAPCSELSMGMSQDFQIA 70
Query: 201 IASGATSVRIGSGIF 215
I GAT +R+G+ +F
Sbjct: 71 IEEGATFIRVGTALF 85
>gi|229092946|ref|ZP_04224079.1| Alanine racemase domain protein [Bacillus cereus Rock3-42]
gi|228690450|gb|EEL44234.1| Alanine racemase domain protein [Bacillus cereus Rock3-42]
Length = 104
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---R 182
+ T E K G+ +T F+ ++ ++ V GLM + P + E+ +
Sbjct: 1 MKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQK 60
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 61 EVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 103
>gi|288923204|ref|ZP_06417346.1| alanine racemase domain protein [Frankia sp. EUN1f]
gi|288345440|gb|EFC79827.1| alanine racemase domain protein [Frankia sp. EUN1f]
Length = 318
Score = 77.5 bits (189), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-------- 127
++G LQ NK + +++V R + A LS + + V IQV+
Sbjct: 139 WHYVGQLQRNKARSVAGWAHCVQSVDRVRLAETLSRVATESGSTIAVCIQVSLDRVGDVA 198
Query: 128 --------------------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ G P L + L + G+M + P
Sbjct: 199 VPSGAPVDKAFPTRENSAASPPVTAERGGARPEDVPALAELVARAPGLVLAGVMAVAPRG 258
Query: 168 GNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+P F L ++ + T +S GM+ D E AIA GAT +RIG+ +FGER
Sbjct: 259 VPPRPAFARLRVVSERLRGDFPEATMVSAGMSSDLEDAIAEGATHLRIGTALFGER 314
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L V + +I +A A R + ++L+AVSK + + S G FAEN+ QEA
Sbjct: 12 LRSRLTVVRDRIVMAARAAGRDPEDLTLIAVSKTWPFEDVVALCSLGVRHFAENREQEAG 71
Query: 63 KKWIP 67
K
Sbjct: 72 PKVEA 76
>gi|253577874|ref|ZP_04855146.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850192|gb|EES78150.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 35
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 1 MGMTNDYQVAVEEGATMVRVGTGIFGERDYS 31
>gi|170090440|ref|XP_001876442.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647935|gb|EDR12178.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 186
Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LSMGM+ DFE A+ +G+ VR+G+GIFG+R ++
Sbjct: 152 LSMGMSSDFEAALKAGSDIVRVGTGIFGQRVKKS 185
>gi|254383751|ref|ZP_04999100.1| hypothetical protein SSAG_03402 [Streptomyces sp. Mg1]
gi|194342645|gb|EDX23611.1| hypothetical protein SSAG_03402 [Streptomyces sp. Mg1]
Length = 75
Score = 74.0 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRI 210
V G+M + + G+ F L + +S GM+ D E AIA+GAT VR+
Sbjct: 1 MVAGVMAVATSPGDGHEAFARLRPVRERLLGEHPGAVVMSAGMSGDLEAAIAAGATHVRV 60
Query: 211 GSGIFGERPC 220
GS I G RP
Sbjct: 61 GSAILGHRPP 70
>gi|295115170|emb|CBL36017.1| Predicted enzyme with a TIM-barrel fold [butyrate-producing
bacterium SM4/1]
Length = 36
Score = 72.1 bits (175), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+E+AI GAT +R+G+GIFG R
Sbjct: 1 MGMTGDYEVAIEEGATMIRVGTGIFGAR 28
>gi|299069052|emb|CBJ40303.1| Putative predicted enzyme with a tim-barrel fold protein
(fragment) [Ralstonia solanacearum CMR15]
Length = 129
Score = 71.3 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + ++ I+++AI + R D+V+LVA SK V+S +I+ A+ G +F EN++QEA
Sbjct: 4 TLEDNIGRIRKAIQHAAIDSGRRADAVTLVAASKTVESHRIQQAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIP-LRKEWDVQLRFIGSLQSNKVSE 89
KW + ++L IG LQSNKV +
Sbjct: 64 VSKWPELRSRNPGIELHLIGPLQSNKVRQ 92
>gi|260461326|ref|ZP_05809574.1| enzyme with a TIM-barrel fold-like protein [Mesorhizobium
opportunistum WSM2075]
gi|319785491|ref|YP_004144967.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|259032863|gb|EEW34126.1| enzyme with a TIM-barrel fold-like protein [Mesorhizobium
opportunistum WSM2075]
gi|317171379|gb|ADV14917.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 156
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + A R + SV L+ V+K V ++ +R A G F ENK+QEA K
Sbjct: 27 NLASVEERITLACARAGRDRASVRLLPVTKTVPAQILRYAFEVGISTFGENKIQEAMSKC 86
Query: 66 IP-LRKEWDVQLRFIGSL 82
D + ++
Sbjct: 87 EALHDLAIDWSIVCTEAV 104
>gi|218658706|ref|ZP_03514636.1| alanine racemase domain protein [Rhizobium etli IE4771]
Length = 28
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 1 MGMSGDYETAIAFGATSVRVGSAIFGAR 28
>gi|34764316|ref|ZP_00145149.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27885907|gb|EAA23250.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 122
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQNICGENKVQV 56
Query: 61 AKKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSR 102
K K +++ + FIG+LQ NKV I+ D+I +V++
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNK 99
>gi|147779422|emb|CAN72285.1| hypothetical protein VITISV_013531 [Vitis vinifera]
Length = 940
Score = 69.8 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ ++ +A + R D V ++AVS+ I G F E+ +QE
Sbjct: 651 MTLARPLRSVIFRVRQTAERSDRRSDQVRVMAVSRTKPVSHIWQVHDVGHRCFGESYVQE 710
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
++ D++ FI L+SNK+ +
Sbjct: 711 MNERAPQ--LPKDIEWYFIEHLRSNKMKQ 737
>gi|329574347|gb|EGG55919.1| YlmE family protein [Enterococcus faecalis TX1467]
Length = 122
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 46/100 (46%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
+K L K D+Q IG+LQ KV I++ D +
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDS 101
>gi|294780587|ref|ZP_06745950.1| conserved domain protein [Enterococcus faecalis PC1.1]
gi|294452414|gb|EFG20853.1| conserved domain protein [Enterococcus faecalis PC1.1]
Length = 106
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 46/100 (46%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
+K L K D+Q IG+LQ KV I++ D +
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDS 101
>gi|119583764|gb|EAW63360.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_a [Homo sapiens]
Length = 169
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ + R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 52 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 111
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ +++ FIG LQ V++++ + + ++S F
Sbjct: 112 ASNPKILSLCPEIKWHFIGHLQKQNVNKLMGKIKLNMKTKLFCHCIASTTLCGRESNF 169
>gi|169841847|ref|ZP_02874956.1| hypothetical protein cdivTM_32110 [candidate division TM7
single-cell isolate TM7a]
Length = 47
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + E + +T LSMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 3 MRNLKEEYQEKYDYITTLSMGMSNDYIEALKNGATIIRIGSKLF 46
>gi|225463488|ref|XP_002263539.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|225467157|ref|XP_002269853.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 207
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ ++ +A + R D V ++AVS+ I G F E+ +QE
Sbjct: 45 MTLARPLRSVIFRVRQTAERSDRRSDQVRVMAVSRTKPVSHIWQVHDVGHRCFGESYVQE 104
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
++ D++ FI L+SNK+ +
Sbjct: 105 MNERAPQ--LPKDIEWYFIEHLRSNKMKQ 131
>gi|78059213|gb|ABB17982.1| conserved hypothetical protein [Aggregatibacter segnis ATCC
33393]
Length = 63
Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +++I + +V L+AVSK + I A GQ+ F EN +QE
Sbjct: 2 IAQNLAHIQEQITQ-CECHSETQSAVKLLAVSKTKPIEDILTAYEAGQMAFGENYVQE 58
>gi|255522097|ref|ZP_05389334.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J1-175]
Length = 84
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMGMTRDFELAIA 202
+ + GLM + P + ++ E+ + T+LSMGMT D+ +AI
Sbjct: 5 FIEIVGLMTMAPITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAIT 64
Query: 203 SGATSVRIGSGI 214
GAT +R+G +
Sbjct: 65 EGATFIRVGRAL 76
>gi|167740075|ref|ZP_02412849.1| hypothetical protein Bpse14_18583 [Burkholderia pseudomallei 14]
Length = 152
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|167721105|ref|ZP_02404341.1| hypothetical protein BpseD_19001 [Burkholderia pseudomallei DM98]
Length = 151
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|167847186|ref|ZP_02472694.1| hypothetical protein BpseB_18067 [Burkholderia pseudomallei B7210]
Length = 158
Score = 67.1 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|167825700|ref|ZP_02457171.1| hypothetical protein Bpseu9_18657 [Burkholderia pseudomallei 9]
Length = 155
Score = 66.7 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|84872182|ref|NP_001034166.1| proline synthase co-transcribed bacterial homolog protein isoform b
[Mus musculus]
gi|38174599|gb|AAH61045.1| Proline synthetase co-transcribed [Mus musculus]
gi|74188637|dbj|BAE28062.1| unnamed protein product [Mus musculus]
Length = 153
Score = 66.3 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ S R ++ LVAVSK + + A GQ F EN +QE +K
Sbjct: 17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEK 76
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ +++ FIG LQ V++++++ ++
Sbjct: 77 ASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSM 113
>gi|71015126|ref|XP_758778.1| hypothetical protein UM02631.1 [Ustilago maydis 521]
gi|46098568|gb|EAK83801.1| hypothetical protein UM02631.1 [Ustilago maydis 521]
Length = 954
Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+LSMGM+ D ++A +G+ +VR+G+ FG RP
Sbjct: 443 ELSMGMSADMDVATMAGSDNVRVGTDCFGRRPA 475
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 5 NKLQVFKQKIENSA---ILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQE 60
++Q +++I + LVA+SK+ I A GQ+ F EN +QE
Sbjct: 191 KRVQEVRERIRKAVAKGKKIGSAGKEPRLVAISKLHPPSAILAAYRQAGQLHFGENYVQE 250
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
+++ F+G LQSNK
Sbjct: 251 MVD--KAKVLPREIRWHFVGGLQSNKGK 276
>gi|167895771|ref|ZP_02483173.1| hypothetical protein Bpse7_18666 [Burkholderia pseudomallei 7894]
Length = 151
Score = 64.8 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|84872187|ref|NP_001034167.1| proline synthase co-transcribed bacterial homolog protein isoform c
[Mus musculus]
gi|29126929|gb|AAH47992.1| Proline synthetase co-transcribed [Mus musculus]
Length = 141
Score = 64.4 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 7 LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ ++++ S R ++ LVAVSK + + A GQ F EN + +
Sbjct: 17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYILSSCP- 75
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+++ FIG LQ V++++++ ++
Sbjct: 76 --------EIKWHFIGHLQKQNVNKLMAVPNLSM 101
>gi|23006220|ref|ZP_00048641.1| COG0325: Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magnetotacticum MS-1]
Length = 156
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
+ L + +++++A A R V L+ +K + +R + G + EN++QE
Sbjct: 14 IAQNLARVRTRVDDAARAAGRAASDVRLLVATKTQPADAVRTVVEAGADLIGENRVQELV 73
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
L V++ IG LQ NKV+++++ +E+V A L+ + R
Sbjct: 74 AKAPDLADLVTAGRVEVHMIGHLQRNKVNQVLATATGVESVDSLALAEALAARCARDGRV 133
Query: 120 LPVYIQVNTGYEIQKSGI 137
L V +QVN E KSG+
Sbjct: 134 LDVLVQVNVSGEESKSGV 151
>gi|164686341|ref|ZP_02210371.1| hypothetical protein CLOBAR_02779 [Clostridium bartlettii DSM
16795]
gi|164601943|gb|EDQ95408.1| hypothetical protein CLOBAR_02779 [Clostridium bartlettii DSM
16795]
Length = 71
Score = 62.1 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
K+ R + V+L+AV+K VD + A+ G ENK QE +K+ + +
Sbjct: 2 KLHQICNDCGRNPEDVNLMAVTKTVDVDAVLEAIEAGITDVGENKPQELARKYEVIGDKV 61
Query: 73 DVQLRFIGSL 82
+ IG+
Sbjct: 62 N--WHLIGTF 69
>gi|154273182|ref|XP_001537443.1| hypothetical protein HCAG_07752 [Ajellomyces capsulatus NAm1]
gi|150415955|gb|EDN11299.1| hypothetical protein HCAG_07752 [Ajellomyces capsulatus NAm1]
Length = 182
Score = 60.9 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 2 SLGNKLQVFKQKIE---------NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQ-V 51
+L L +I + A+RP+ V LVAVSK+ + I++ +
Sbjct: 7 TLVTNLSAVTARITSASASANASQTRPQAQRPQCPVRLVAVSKLKPASDIQILHEYNPAL 66
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
F EN LQE + ++ FIG LQSNK
Sbjct: 67 HFGENYLQELLE--KSKILPPGIRWHFIGGLQSNKC 100
>gi|316963953|gb|EFV49297.1| proline synthetase [Trichinella spiralis]
Length = 249
Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 121 PVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V +QVNT EIQK G P Q + ++ + L + GLM I A + S+
Sbjct: 37 NVMLQVNTSGEIQKHGCEPEQVLQLARMVVQDCPFLQLIGLMTIGTASSCAEVARGEFSK 96
Query: 180 IAR-----------ECKLTKLSMGMTRDFELAIASGATSVR 209
+ + E +LSMGM+ DF+ AI G++SVR
Sbjct: 97 LFQIRNQICTDLDWEVGQLELSMGMSNDFQEAICCGSSSVR 137
>gi|225467453|ref|XP_002263399.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 111
Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
++ +A ++ R + V ++A+SK IR + G F E+ +QE ++
Sbjct: 5 TVIFRVRQTAEMSGRRSNQVRVMAISKPKPVSHIRQVHNVGHRCFGESYIQEMNERAPQ- 63
Query: 69 RKEWDVQLRFIGSLQSNKVSE 89
D++ F+ L+SNK+ +
Sbjct: 64 -LPKDLEWYFMEHLRSNKMKQ 83
>gi|297185096|gb|ADI21205.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 56
Score = 58.6 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIG 211
+ LSMGMT D++ AI GAT VRIG
Sbjct: 1 MXTLSMGMTNDYKAAIIEGATMVRIG 26
>gi|207108930|ref|ZP_03243092.1| hypothetical protein HpylH_06059 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 134
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSRH-HIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVS 88
K + ++ IGSLQ NK++
Sbjct: 64 KMHS-LEHLPLEWHMIGSLQENKIN 87
>gi|73984115|ref|XP_851733.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Canis familiaris]
Length = 145
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 9 VFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
K+ ++ + R +V LVAVSK + + A GQ F E +QE +K
Sbjct: 19 TVKECMQQAVAWRPRDLPAVQPRLVAVSKTKPVETVIEAYCHGQHTFGEKYVQELLEKAS 78
Query: 67 PLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ +++ FIG LQ V++++++ ++
Sbjct: 79 NPKILSSCPEIKWHFIGHLQKQNVNKLMAIPNLFM 113
>gi|189916723|gb|ACE62872.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 58
Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKT 57
>gi|189916719|gb|ACE62870.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 57
Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKT 57
>gi|157136632|ref|XP_001663799.1| proline synthetase associated protein [Aedes aegypti]
gi|108880985|gb|EAT45210.1| proline synthetase associated protein [Aedes aegypti]
Length = 223
Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 10 FKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+Q + + ++ LVAVSK + I S GQ F EN +QE +K
Sbjct: 15 IRQTLAKIDEAFGKRSQTIKAPKPLLVAVSKTKPIELILDGYSIGQRDFGENYVQELIEK 74
Query: 65 WIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK 104
R D++ FIG LQ+NK+++IV+L ++ +
Sbjct: 75 ANDPRILEHCKDIRWHFIGHLQTNKINKIVNLPNLHMIQTVHN 117
>gi|189916725|gb|ACE62873.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 58
Score = 55.9 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLTVSKT 57
>gi|330982763|gb|EGH80866.1| ribose operon repressor [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 62
Score = 54.4 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
E AIA GAT VRIG+ +FG R
Sbjct: 37 EAAIAQGATWVRIGTALFGARDY 59
>gi|189916727|gb|ACE62874.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 58
Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK 35
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSK 56
>gi|294993534|ref|ZP_06799225.1| hypothetical protein Mtub2_03254 [Mycobacterium tuberculosis 210]
Length = 189
Score = 53.2 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KKWIPLR---------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
K L V +G +Q NK + +V
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDS 126
>gi|255022901|ref|ZP_05294887.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J1-208]
Length = 37
Score = 52.0 bits (123), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
M+ LQ +IE + + R V+LVAV+K
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKDVTLVAVNKN 36
>gi|315124219|ref|YP_004066223.1| hypothetical protein ICDCCJ07001_654 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315017941|gb|ADT66034.1| hypothetical protein ICDCCJ07001_654 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 159
Score = 51.7 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP-LRKEWDVQLRFIGSLQS 84
+V LVA SK VD+ I G V F EN++Q +K K+ D++ FIG+LQS
Sbjct: 11 KNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQS 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
NK++ ++ ++ + + L +++N+ E KSG+ PNQ +
Sbjct: 71 NKINLLIKQKPILW--HSCNGIKIAKAMDKRLDYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCI 163
+++ + + LN+ G+M I
Sbjct: 129 EYLQIQEECSNLNLCGVMSI 148
>gi|238574406|ref|XP_002387549.1| hypothetical protein MPER_13663 [Moniliophthora perniciosa FA553]
gi|215443236|gb|EEB88479.1| hypothetical protein MPER_13663 [Moniliophthora perniciosa FA553]
Length = 73
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++++ +SA +LVAVSK S I V GQ F EN +QE
Sbjct: 19 LRESLSEIRERVGSSA----------TLVAVSKYKPSSDIFVCYENGQKDFGENYVQELV 68
Query: 63 KKWIP 67
K
Sbjct: 69 DKAKE 73
>gi|229092947|ref|ZP_04224080.1| hypothetical protein bcere0021_36930 [Bacillus cereus Rock3-42]
gi|228690451|gb|EEL44235.1| hypothetical protein bcere0021_36930 [Bacillus cereus Rock3-42]
Length = 65
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
+ LVAV+K V +K + G + EN+ + +K+ + + +I
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSKVNWHFYWI 55
>gi|312962137|ref|ZP_07776629.1| hypothetical protein PFWH6_4055 [Pseudomonas fluorescens WH6]
gi|311283474|gb|EFQ62063.1| hypothetical protein PFWH6_4055 [Pseudomonas fluorescens WH6]
Length = 35
Score = 45.5 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIR 43
+I + R V L+ VSK D +R
Sbjct: 2 RILQACRRVGRDPCGVRLLPVSKTFDEAHLR 32
>gi|293189600|ref|ZP_06608318.1| conserved hypothetical protein [Actinomyces odontolyticus F0309]
gi|292821441|gb|EFF80382.1| conserved hypothetical protein [Actinomyces odontolyticus F0309]
Length = 48
Score = 42.0 bits (97), Expect = 0.060, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSL-VAVSKMVDSKKIRVALSC 48
MS+ + + +I+ + R DSV L +AV K ++ R A +
Sbjct: 1 MSIPEAIATARDRIDRATSACGRT-DSVHLELAV-KTRTPEECRAAAAA 47
>gi|300813239|ref|ZP_07093604.1| glycine hydroxymethyltransferase [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300512646|gb|EFK39781.1| glycine hydroxymethyltransferase [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 412
Score = 40.9 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 17/199 (8%)
Query: 1 MSLGNKLQVFKQKIENSAIL-AKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKL 58
M + L+ +I ++ KR ++ V L+A S+ S+ + A+ S ++E
Sbjct: 1 MEIKENLKKVDFEIFSAIEKETKRQREHVELIA-SENFVSEAVLEAIGSTPTNKYSEGYP 59
Query: 59 QEAKKKWIPLRKEWDVQL-----------RFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ + S + ++ +++ + +
Sbjct: 60 AKRYYAGCEHIDTIETLAIERLKKLFNSEHANVQPHSGSNANLIVYSALLKPGDKVMGMN 119
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
L + + + G+ P + C + + L+ +
Sbjct: 120 LDEGGHLSHGSPVNFSGKFY---NFTSYGLNPETERIDYDACYKLAKEVKPKLIVAGASA 176
Query: 168 GNPKPHFYLLSEIARECKL 186
K F EIA
Sbjct: 177 YPRKIDFSKFREIADAVGA 195
>gi|282882086|ref|ZP_06290727.1| glycine hydroxymethyltransferase [Peptoniphilus lacrimalis 315-B]
gi|281298116|gb|EFA90571.1| glycine hydroxymethyltransferase [Peptoniphilus lacrimalis 315-B]
Length = 412
Score = 40.9 bits (94), Expect = 0.12, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 17/199 (8%)
Query: 1 MSLGNKLQVFKQKIENSAIL-AKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKL 58
M + L+ +I ++ KR ++ V L+A S+ S+ + A+ S ++E
Sbjct: 1 MEIKENLKKVDFEIFSAIEKETKRQREHVELIA-SENFVSEAVLEAIGSTPTNKYSEGYP 59
Query: 59 QEAKKKWIPLRKEWDVQL-----------RFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ + S + ++ +++ + +
Sbjct: 60 AKRYYAGCEHIDTIETLAIERLKKLFNAEHANVQPHSGSNANLIVYSALLKPGDKVMGMN 119
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
L + + + G+ P + C + + L+ +
Sbjct: 120 LDEGGHLSHGSPVNFSGKFY---NFTSYGLNPETERIDYDACYKLAKEVKPKLIVAGASA 176
Query: 168 GNPKPHFYLLSEIARECKL 186
K F EIA
Sbjct: 177 YPRKIDFSKFREIADAVGA 195
>gi|169335517|ref|ZP_02862710.1| hypothetical protein ANASTE_01931 [Anaerofustis stercorihominis DSM
17244]
gi|169258255|gb|EDS72221.1| hypothetical protein ANASTE_01931 [Anaerofustis stercorihominis DSM
17244]
Length = 300
Score = 40.9 bits (94), Expect = 0.15, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 178 SEIARECKLTKLSMGMTRDFELAIAS---GATSVRIGSGIF 215
++A+E ++ LS G ++ A+ G+T V +GS IF
Sbjct: 228 HQVAKEIEIPILSYGGVSNYMDALEFIMAGSTLVGVGSAIF 268
>gi|138895645|ref|YP_001126098.1| hypothetical protein GTNG_2001 [Geobacillus thermodenitrificans
NG80-2]
gi|196249582|ref|ZP_03148279.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
gi|134267158|gb|ABO67353.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210876|gb|EDY05638.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
Length = 370
Score = 38.9 bits (89), Expect = 0.53, Method: Composition-based stats.
Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 29/224 (12%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDS--KKIRVALSCGQVIFAENKLQEAKKKWIPL 68
K+ I N+ +L K V + V+K V + + + G FA+++LQ K
Sbjct: 12 KKLIHNARVLNAICKHHVEWIPVTKSVGANIEIVDSLYKQGYRKFADSRLQNLKAIKEYD 71
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
LR G + EI + + + + +L S+ +I +
Sbjct: 72 SSINTCLLRIPG------IHEIKDVITWADCSLVSEYKVIEALNQEALSQGKIHHIILMI 125
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-------A 181
+ GIMP + D + ++ G+ G P L+++
Sbjct: 126 ELGDLREGIMPEELMDIGKHILKFPAIHWLGIGTNLTCFGGVLPTSDKLAQLVQLKESVE 185
Query: 182 RECK--LTKLSMG--------MTRDFELAIASGATSVRIGSGIF 215
++ L+ +S G M+ + I +R+G +F
Sbjct: 186 KKLGYHLSVISGGNSSSLHLLMSGEMPREI----NHLRLGESLF 225
>gi|159129055|gb|EDP54169.1| NF-X1 finger and helicase domain protein, putative [Aspergillus
fumigatus A1163]
Length = 1914
Score = 38.6 bits (88), Expect = 0.71, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 33/149 (22%), Gaps = 4/149 (2%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIF--AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
VAV+K V+ K +A+ C Q + + + L +V
Sbjct: 1301 VAVTKTVERCKHEIAVKCHQDVNLATFKCTAQCNALMACGHACKRPCHHCVQLLDREEVR 1360
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY--IQVNTGYEIQKSGIMPNQTKDFV 146
A S P V G+ T
Sbjct: 1361 IDHGRCQQKCGRKHSTCAHFCSAVCHGDEPCPPCGEPCDVQCGHSKCTKKCQEPCTPCAE 1420
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
C + + + C P P
Sbjct: 1421 ERCFSRCPHSACTMPCAAPCNHIPCSKRC 1449
>gi|195586637|ref|XP_002083080.1| GD11921 [Drosophila simulans]
gi|194195089|gb|EDX08665.1| GD11921 [Drosophila simulans]
Length = 498
Score = 38.2 bits (87), Expect = 0.80, Method: Composition-based stats.
Identities = 16/173 (9%), Positives = 47/173 (27%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 202 NAGCVAVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHL 261
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 262 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 321
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + + +C + LS M+ D+ LAI++
Sbjct: 322 LVHNGEKPFECERCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPLAISA 374
>gi|195353378|ref|XP_002043182.1| GM11927 [Drosophila sechellia]
gi|194127270|gb|EDW49313.1| GM11927 [Drosophila sechellia]
Length = 498
Score = 38.2 bits (87), Expect = 0.85, Method: Composition-based stats.
Identities = 16/173 (9%), Positives = 47/173 (27%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 202 NAGCVAVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHL 261
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 262 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 321
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + + +C + LS M+ D+ LAI++
Sbjct: 322 LVHNGEKPFECERCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPLAISA 374
>gi|17945706|gb|AAL48902.1| RE30918p [Drosophila melanogaster]
Length = 501
Score = 38.2 bits (87), Expect = 0.96, Method: Composition-based stats.
Identities = 15/173 (8%), Positives = 47/173 (27%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 205 NAGCVGVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHL 264
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 265 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 324
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + + +C + LS M+ D+ +AI++
Sbjct: 325 LVHNGEKPFECERCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPVAISA 377
>gi|17647565|ref|NP_523867.1| kruppel [Drosophila melanogaster]
gi|73920218|sp|P07247|KRUP_DROME RecName: Full=Protein krueppel
gi|7291903|gb|AAF47321.1| kruppel [Drosophila melanogaster]
gi|201065447|gb|ACH92133.1| FI01010p [Drosophila melanogaster]
Length = 502
Score = 37.8 bits (86), Expect = 1.0, Method: Composition-based stats.
Identities = 15/173 (8%), Positives = 47/173 (27%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 206 NAGCVGVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHL 265
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 266 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 325
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + + +C + LS M+ D+ +AI++
Sbjct: 326 LVHNGEKPFECERCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPVAISA 378
>gi|70989597|ref|XP_749648.1| NF-X1 finger and helicase domain protein [Aspergillus fumigatus
Af293]
gi|66847279|gb|EAL87610.1| NF-X1 finger and helicase domain protein, putative [Aspergillus
fumigatus Af293]
Length = 1914
Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 33/149 (22%), Gaps = 4/149 (2%)
Query: 31 VAVSKMVDSKKIRVALSCGQ--VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
VAV+K V+ K +A+ C Q + + + L +V
Sbjct: 1301 VAVTKTVERCKHEIAVKCHQDVSLATFKCTAQCNALLACGHACKRPCHHCVQLLDREEVR 1360
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY--IQVNTGYEIQKSGIMPNQTKDFV 146
A S P V G+ T
Sbjct: 1361 IDHGRCQQKCGRKHSTCAHFCSAVCHGDEPCPPCGEPCDVQCGHSKCTKKCGEPCTPCAE 1420
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
C + + + C P P
Sbjct: 1421 ERCFSRCPHSACTMPCAAPCNHIPCSKRC 1449
>gi|224135085|ref|XP_002321980.1| predicted protein [Populus trichocarpa]
gi|222868976|gb|EEF06107.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+ +VA++K IR G +N QE K+K K+ +
Sbjct: 17 QQIRVVAITKARPVSLIRQVTEMGSRCLGKNYAQEVKEKAPQFSKDIEWDF 67
>gi|220913326|ref|YP_002488635.1| inosine 5-monophosphate dehydrogenase [Arthrobacter
chlorophenolicus A6]
gi|219860204|gb|ACL40546.1| IMP dehydrogenase family protein [Arthrobacter chlorophenolicus A6]
Length = 378
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 191 MGMTRDFELAIASGATSVRIGSGI 214
MG + D AIA GA +V +GS +
Sbjct: 270 MGTSGDMVKAIAMGADAVMLGSAL 293
>gi|156097118|ref|XP_001614592.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803466|gb|EDL44865.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 5861
Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 5/137 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L KQ+I + D V L A K D +KI+ G I ++ +K W
Sbjct: 5719 LTSMKQEITRLNKKDQISLDEVVLYADIKNHDIEKIKEVPEHGFHIHGL-FIEGSKWNWQ 5777
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ E ++ ++ + + ++ + K R +I
Sbjct: 5778 EGKLEESSPKVLCENMPVIHITVVSNKDKKVKFIENNKHMFYNCPVYKYNVRTDKYFI-- 5835
Query: 127 NTGYEIQKSGIMPNQTK 143
K+ + P+ K
Sbjct: 5836 --FRIHLKTDVDPSIWK 5850
>gi|254172471|ref|ZP_04879146.1| Aldehyde ferredoxin oxidoreductase, domains 2 & 3 protein
[Thermococcus sp. AM4]
gi|214033400|gb|EEB74227.1| Aldehyde ferredoxin oxidoreductase, domains 2 & 3 protein
[Thermococcus sp. AM4]
Length = 630
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 19/201 (9%)
Query: 5 NKLQVFKQKIENSAILAKRP-KDSV----SL--VAV--SKMVDS---KKIRVALSCGQVI 52
L + I+ A R +V L + V +K V +K+R + +
Sbjct: 166 ENLSLI-ATIDTDERQAGRGGPGAVLGSKKLKGIVVKGTKKVPIAQPEKLRELIK-KWAL 223
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
++ + D R G+ + + + R K +
Sbjct: 224 IFKDHPATKADMEYGSGEFLDWMNRERGTFPTRN----WQMGFFKKAYERAKEEGREHIY 279
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPK 171
+ + K + + E L A+ +
Sbjct: 280 IDPYYWAPKYRVGRRPCPLCNKPCSQYVKVESEKWGTFMTDGPEYETLYSFGGALELDDF 339
Query: 172 PHFYLLSEIARECKLTKLSMG 192
L+ +A E L +S G
Sbjct: 340 ETVAYLNYLADELGLDTISAG 360
>gi|163840508|ref|YP_001624913.1| inosine 5-monophosphate dehydrogenase [Renibacterium salmoninarum
ATCC 33209]
gi|162953984|gb|ABY23499.1| GMP reductase [Renibacterium salmoninarum ATCC 33209]
Length = 375
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERP 219
MG + D AIA GA +V +G+ + RP
Sbjct: 270 MGTSGDIVKAIAMGADAVMLGTAL--ARP 296
>gi|229193751|ref|ZP_04320691.1| hypothetical protein bcere0002_53930 [Bacillus cereus ATCC 10876]
gi|228589723|gb|EEK47602.1| hypothetical protein bcere0002_53930 [Bacillus cereus ATCC 10876]
Length = 242
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 17/46 (36%)
Query: 175 YLLSEIARECKLT-KLS-MGMTRDFELAIASGATSVRIGSGIFGER 218
Y +EI + + +LS MGM RIG+ +FG+R
Sbjct: 54 YSYNEIYDKLRFKLRLSEMGM---------------RIGTALFGDR 84
>gi|296165533|ref|ZP_06848062.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899111|gb|EFG78588.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 390
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 12 QKIENSAILAKRPKDSVSLVA 32
Q+I + R + +VA
Sbjct: 225 QRIRTACERIGRDPAEIRIVA 245
>gi|308160676|gb|EFO63151.1| Ribonuclease, putative [Giardia lamblia P15]
Length = 1029
Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats.
Identities = 10/155 (6%), Positives = 41/155 (26%), Gaps = 2/155 (1%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENK--LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
+K + + AL+ +F + + + + + + + N+
Sbjct: 48 TKYWSLEDVNKALNEHPTLFIKGRLVIPKKYGHGTVYSVHHNANIHLSSKVAMNRSIHDD 107
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+ I ++ ++ + + + +++ F + C+
Sbjct: 108 EVLVFILENQMTTCKTVCDWKLDNTPTDQELIMMTQRYEGVVVYNYTAAKSRYFCLQCKL 167
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ + + P L + +
Sbjct: 168 LPNSGNKTIKLLYPLDQRYPAISVSLKDSHQSHDA 202
>gi|221054370|ref|XP_002258324.1| dynein heavy chain [Plasmodium knowlesi strain H]
gi|193808393|emb|CAQ39096.1| dynein heavy chain, putative [Plasmodium knowlesi strain H]
Length = 5777
Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 1/118 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L KQ+I + D V L A K D +KI+ G I ++ +K W
Sbjct: 5635 LTSMKQEITRLNKKDQISLDEVVLYADIKNHDIEKIKEVPEHGFHIHGL-FIEGSKWNWQ 5693
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ E ++ ++ + + ++ + K R +I
Sbjct: 5694 EGKLEESSPKVLCENMPVIHITVVSNKDKKVKFIENNKHMFYNCPVYKYNVRTDKYFI 5751
>gi|8159|emb|CAA27148.1| Kr polypeptide [Drosophila melanogaster]
gi|224875|prf||1202348A Krueppel gene
Length = 466
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 15/173 (8%), Positives = 47/173 (27%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 206 NAGCVGVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECDKRFTRDHHL 265
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 266 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 325
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + + +C + LS M+ D+ +AI++
Sbjct: 326 LVHTGEKPFECERCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPVAISA 378
>gi|229542368|ref|ZP_04431428.1| alanine racemase domain protein [Bacillus coagulans 36D1]
gi|229326788|gb|EEN92463.1| alanine racemase domain protein [Bacillus coagulans 36D1]
Length = 386
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 13/219 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK-IR-VALSCGQVIFAENKLQEAKK 63
L+ + + L R S++ V K V + I + G A++K+ +K
Sbjct: 10 NLEKIRHNAKTLKQLFGRKGISIT--GVVKGVTADLNIAGALVEAGITSLADSKIANIEK 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + LR G + K + E + ++ + L V
Sbjct: 68 MRKAGIKADLILLRSPGISEVEKTVRYADISMNTELDTIRALSAEAVRQQKTHKIILMVE 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVI----LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ + K + G++ M + E
Sbjct: 128 MGDLREGILLKDAPAMIREIFTCPGIELAGIGTNFACFGGVLPTEQKMQTFSRFVQAMQE 187
Query: 180 IARECKLTKLSMGMTRDFELAIA----SGATSVRIGSGI 214
+ KL +S G + ++ A+ +VR+G I
Sbjct: 188 LF-SLKLPYVSGGNSANYNWAVKTKDAEAVNNVRLGESI 225
>gi|193216675|ref|YP_001999917.1| alanine racemase-like protein [Mycoplasma arthritidis 158L3-1]
gi|193001998|gb|ACF07213.1| alanine racemase-like protein [Mycoplasma arthritidis 158L3-1]
Length = 352
Score = 36.2 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 26/203 (12%), Positives = 68/203 (33%), Gaps = 21/203 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMV-DSKKIRVA-LSCGQVIFAENKLQE 60
+ FK I+ + + ++ ++AV+K +++ G F +++L
Sbjct: 5 IVINEAKFKNNIKKAIEIC--KAKNIEVLAVTKGFVGQRRMAELYYEAGIRYFGDSRLDN 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + ++L + + L ++ ++ + ++
Sbjct: 63 FEVYKDIPGHKQMLRLPMLEEIPR--------LVELCDSSLNGDLTIIKAISEYCLKVNK 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
I + ++ GI+P T V + +N+ G+ C G P + +
Sbjct: 115 VHDIVLMIDMGDRREGILPEDTLKVVKEILEYRGVNLIGIGCNFGCYGARVPSKETMDKF 174
Query: 180 --IAR------ECKLTKLSMGMT 194
+ + KL +S G +
Sbjct: 175 VSLKKAIETTYNLKLKHISGGNS 197
>gi|8671686|gb|AAF78341.1|AF125247_1 putative ABC transporter protein [Prevotella albensis]
Length = 105
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG------MTR 195
+++ + QL M P + + EI+R L +LSMG M+
Sbjct: 29 PEEYEMPNVSMKQLVSMHKMFYPNFSEDVLYKCLMDFEISRNVNLKELSMGQKKKVYMS- 87
Query: 196 DFELAIASG 204
+A+ASG
Sbjct: 88 ---VALASG 93
>gi|324504372|gb|ADY41888.1| Tyrosine-protein phosphatase non-receptor type 2 [Ascaris suum]
Length = 838
Score = 35.9 bits (81), Expect = 3.7, Method: Composition-based stats.
Identities = 16/152 (10%), Positives = 37/152 (24%), Gaps = 7/152 (4%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK G ++ + + ++ I + S+
Sbjct: 667 IAVSKNWTV------YELGLTKDGRSRRIVWHHYSGWEQNKGGADIQIIWKIHSSLRKLR 720
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
L + + I VN ++K + +
Sbjct: 721 RPLICMSMAGAGRAGTYAAFEWAHSMHHDKYRRI-VNVEECVKKVREYRMHSVQSLPQFE 779
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Y L + + + + L E+ +
Sbjct: 780 YIYILMLRHIFLVKKIRDDYMSKRALQRELHK 811
>gi|330914961|ref|XP_003296856.1| hypothetical protein PTT_07053 [Pyrenophora teres f. teres 0-1]
gi|311330822|gb|EFQ95050.1| hypothetical protein PTT_07053 [Pyrenophora teres f. teres 0-1]
Length = 1230
Score = 35.9 bits (81), Expect = 3.9, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 4/134 (2%)
Query: 8 QVFKQKIENSAILAKRP--KDSVSLVAVSKMVDSKKIRVALSCGQVIFA-ENKLQEAKKK 64
+ ++ IE + P D +L AV+ V IR A+ + +A
Sbjct: 369 EAYQNDIEKALERIHLPEHPDKATLCAVTHAVLHDAIRPAIEKHVPTISVFEPESKAFSA 428
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
R + ++ + I + + + + + S+ +
Sbjct: 429 VPATRAAKNKAWHHTATVMTQSCRGIFHVAKKARS-WGLPRQMDFTPDFVVGSKTFQSKL 487
Query: 125 QVNTGYEIQKSGIM 138
Y
Sbjct: 488 DKADCYVNSTWTHT 501
>gi|229492390|ref|ZP_04386197.1| dibenzothiophene desulfurization enzyme A [Rhodococcus erythropolis
SK121]
gi|229320799|gb|EEN86613.1| dibenzothiophene desulfurization enzyme A [Rhodococcus erythropolis
SK121]
Length = 434
Score = 35.9 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAV 33
L L+ ++ I A A R DSV LVA
Sbjct: 241 LEEDLRAKRKAIRGYAEEAGRDPDSVRLVAA 271
>gi|187923085|ref|YP_001894727.1| beta-lactamase [Burkholderia phytofirmans PsJN]
gi|187714279|gb|ACD15503.1| beta-lactamase domain protein [Burkholderia phytofirmans PsJN]
Length = 263
Score = 35.9 bits (81), Expect = 4.6, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMV-----DSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ KIE R V+L+ V+ + ++R G I A + ++
Sbjct: 39 EDKIERVLKKHGRSFRDVTLIVVTHAHTDHAGSAARLREL--TGAPILAHAGDLDYYERR 96
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
+ + G L +
Sbjct: 97 KEMTYCV---THWWGPLFLRSGVPGEPYLPFTPDI 128
>gi|297162492|gb|ADI12204.1| 4-hydroxy-2-ketovalerate aldolase [Streptomyces bingchenggensis
BCW-1]
Length = 335
Score = 35.5 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 191 MGMTRDFELAIASGATSVRIG 211
G + D A+A GA +RIG
Sbjct: 84 WGTSDDLRKAVAHGADVIRIG 104
>gi|172058476|ref|YP_001814936.1| histidine kinase [Exiguobacterium sibiricum 255-15]
gi|171990997|gb|ACB61919.1| histidine kinase [Exiguobacterium sibiricum 255-15]
Length = 390
Score = 35.1 bits (79), Expect = 6.8, Method: Composition-based stats.
Identities = 19/189 (10%), Positives = 55/189 (29%), Gaps = 8/189 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSV-----SLVAVSKMV---DSKKIRVALSCGQVIFA 54
+ +L+ K ++ + A+R + + LV VSK + IR A +
Sbjct: 43 IQQELRELKTRVHDYIKEAERLERHIKDSKARLVIVSKNFDNYSEQDIRTAYETANALQL 102
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
E+ + + + R++ + + ++S V+ + +
Sbjct: 103 ESFINQRDEMNCRKRRDELERRLVQLDETIERADMLISRVSVVLNFLTDDMQVMNEKYEK 162
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ + ++ L + ++ +
Sbjct: 163 AMQKQEMGLKVFQSAENERRRLSRDMHDGPAQTLAHVLIRADLIEKIHQHNGAEAAFEEI 222
Query: 175 YLLSEIARE 183
+ L ++ R+
Sbjct: 223 HRLRKLIRD 231
>gi|326922505|ref|XP_003207489.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase
HECW2-like [Meleagris gallopavo]
Length = 1571
Score = 35.1 bits (79), Expect = 7.3, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D+ AI R G+ +GERP
Sbjct: 418 NDYLDAIEHN-NHPRPGTSAYGERP 441
>gi|194887013|ref|XP_001976730.1| GG23037 [Drosophila erecta]
gi|190659917|gb|EDV57130.1| GG23037 [Drosophila erecta]
Length = 502
Score = 34.7 bits (78), Expect = 8.2, Method: Composition-based stats.
Identities = 14/173 (8%), Positives = 47/173 (27%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 206 NAGGVSVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHL 265
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 266 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 325
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + + +C + LS M+ D+ +A+++
Sbjct: 326 LVHNGEKPFECERCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPMAVSA 378
>gi|195489927|ref|XP_002092946.1| GE14467 [Drosophila yakuba]
gi|194179047|gb|EDW92658.1| GE14467 [Drosophila yakuba]
Length = 502
Score = 34.7 bits (78), Expect = 8.5, Method: Composition-based stats.
Identities = 14/173 (8%), Positives = 46/173 (26%), Gaps = 16/173 (9%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ G V +++ ++ + + + +++ + + + +R+
Sbjct: 206 NAGGVAVSKDPSRDKSFTCKICSRSFGYKHVLQNHERTHTGEKPFECPECHKRFTRDHHL 265
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQ-------KSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + + +G P + QL
Sbjct: 266 KTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYTCEICDGKFSDSNQLKSHM 325
Query: 160 LMCIPPAMGNPKPHFYLLSE----IARECKLTK-----LSMGMTRDFELAIAS 203
L+ + +C + LS M+ D+ +A+++
Sbjct: 326 LVHNGEKPFECDRCHMKFRRRHHLMNHKCGIQSPPTPALSPAMSGDYPMAVSA 378
>gi|1181834|gb|AAA86908.1| polyprotein [Classical swine fever virus]
Length = 3898
Score = 34.7 bits (78), Expect = 8.6, Method: Composition-based stats.
Identities = 25/193 (12%), Positives = 57/193 (29%), Gaps = 16/193 (8%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K+ I + + +++ + G+ IF E ++ + +
Sbjct: 3101 KKNITKAEAQCLLCPED----------QMEELPDWFAAGEPIFLEANIKHDRLHLVGDIA 3150
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ + +G+ S K+S+ V +S + +Q
Sbjct: 3151 TIKEKAKQLGATDSTKISKEVGAKVYSMKLSNWVMQEENKQG--NLTPLFEELLQQCPPG 3208
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL- 189
K+ M + + G + +P + L E+ E K+ L
Sbjct: 3209 GQNKTAHMVSAYQLAQGNWMPTSCHVFMGTISARRTKTHPYEAYVKLRELVEEHKMKTLC 3268
Query: 190 ---SMGMTRDFEL 199
S+G D+ +
Sbjct: 3269 PGSSLGKHNDWII 3281
>gi|315426307|dbj|BAJ47948.1| conserved hypothetical protein [Candidatus Caldiarchaeum
subterraneum]
Length = 100
Score = 34.7 bits (78), Expect = 8.8, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 16/66 (24%)
Query: 3 LGNKLQVFKQKIENSAIL------------AKRP----KDSVSLVAVSKMVDSKKIRVAL 46
+ LQ + QKI+ + A R V ++ V+K+ + I
Sbjct: 10 IFQNLQHYLQKIKEAVKQLDNEARLYLFGSAARGDHIYASDVDILIVTKLHPAHVIAYLR 69
Query: 47 SCGQVI 52
G
Sbjct: 70 ELGFDE 75
>gi|224013832|ref|XP_002296580.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968932|gb|EED87276.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1324
Score = 34.7 bits (78), Expect = 9.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 183 ECKLTKLSMGMTRDFELA---IASGATSV 208
K + S+GM+ DFELA I G T +
Sbjct: 794 NLKAGERSLGMS-DFELALDYIKCGLTFL 821
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.129 0.428
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,842,179,002
Number of Sequences: 14124377
Number of extensions: 91382002
Number of successful extensions: 255432
Number of sequences better than 10.0: 2526
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 249802
Number of HSP's gapped (non-prelim): 2707
length of query: 222
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 88
effective length of database: 2,950,127,112
effective search space: 259611185856
effective search space used: 259611185856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 78 (34.7 bits)