RPSBLAST alignment for GI: 254780801 and conserved domain: cd00635
>gnl|CDD|143483 cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Length = 222
Score = 241 bits (618), Expect = 1e-64
Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 10/215 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I +A A R D V+LVAVSK V ++ IR A+ GQ F EN++QEA K
Sbjct: 9 RERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKA-EELP 67
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ D++ FIG LQ+NKV V LFD+I +V K A L+ K+ R L V +QVN G
Sbjct: 68 DPDIEWHFIGHLQTNKVKYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIGG 127
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK-- 185
E KSG+ P + ++ + L + GLM I P +P+ P+F L E+ E
Sbjct: 128 EESKSGVAPEELEELLEEIAALPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAK 187
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L +LSMGM+ DFE+AI GAT VRIG+ IFG
Sbjct: 188 GGVNLKELSMGMSGDFEIAIEEGATLVRIGTAIFG 222