RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62] (222 letters) >1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} (A:) Length = 256 Score = 130 bits (328), Expect = 1e-31 Identities = 55/231 (23%), Positives = 85/231 (36%), Gaps = 18/231 (7%) Query: 7 LQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64 + ++ + A + L+ VSK+ + I++ G F EN +QE +K Sbjct: 18 YESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEK 77 Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---EMIKQSRFLP 121 L + K V +ET+ K A L+ + + Sbjct: 78 AKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPIL 137 Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV---ILCRQKYQLNVEGLMCIPPAMGNP-----KPH 173 +Q+NT +E QKSG+ V L + + + GL I + Sbjct: 138 CNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLXTIGSWNVSHEDSKENRD 197 Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 F L E ++ KLS G + DF AI G VRIG+ IFG RP Sbjct: 198 FATLVEWKKKIDAKFGTSLKLSXGXSADFREAIRQGTAEVRIGTDIFGARP 248 >3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} (A:27-241) Length = 215 Score = 114 bits (287), Expect = 7e-27 Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 11/219 (5%) Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKW 65 ++ A + S + A + + + KI G F +++EA + Sbjct: 1 VRAIVANYRTLAQHVAPTECSAVVXANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLK 60 Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125 + + + + +K E V+ +I ++ T K+++ P IQ Sbjct: 61 ---AVLPENVMIALLNGFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQ 117 Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEI 180 V+T + G+ + + + + ++ ++ + + Sbjct: 118 VDTNM--SRLGLDKKELQKLIKNPTIFEKAEIKYILSHLANGEDASHSSNNKQLAAFKRV 175 Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + K+S + L VR G ++G P Sbjct: 176 LAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDP 214 >3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} (A:) Length = 282 Score = 104 bits (260), Expect = 1e-23 Identities = 64/244 (26%), Positives = 95/244 (38%), Gaps = 31/244 (12%) Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66 + +I + A R SV L+A +K D +I A+ G EN+ QE K Sbjct: 29 VHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVTAKAE 88 Query: 67 PLRK----------EWDVQLR---------FIGSLQSNKVSEIVSLFDVIETVSREKTAS 107 L + IG LQSNK+ +++ + D IE+V A Sbjct: 89 GLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAE 148 Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167 +S + + + V ++VN E KSG P + ++GL I + Sbjct: 149 KISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLXTIGAHV 208 Query: 168 GNPKPH---FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215 + F L + +LS G T D ELAIA G+T VR+G+ IF Sbjct: 209 HDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVGTAIF 268 Query: 216 GERP 219 GER Sbjct: 269 GERA 272 >2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* (A:19-239) Length = 221 Score = 101 bits (253), Expect = 6e-23 Identities = 31/220 (14%), Positives = 57/220 (25%), Gaps = 21/220 (9%) Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKK-----IRVALSCGQVIFAENKLQEAKKKWIPLR 69 N + + V + AV +AL G A L EA R Sbjct: 5 NNVTHIXEFIPSDVEIFAVVXGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLR---R 61 Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 + +G ++ DV TV + + S + +I ++G Sbjct: 62 AGITAPILVLGPSPPRDINVAAE-NDVALTVFQXEWVDEAIXLWDGSST-MXYHINFDSG 119 Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLLSEIAREC 184 + + F+ L +EG+ + + E Sbjct: 120 -MGRIGIRERXELXGFLXSLEGAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWL 178 Query: 185 -----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + + +VRIG ++G P Sbjct: 179 XEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSP 218 >1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli} (A:) Length = 234 Score = 101 bits (252), Expect = 7e-23 Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 10/223 (4%) Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66 L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE K Sbjct: 8 LAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIR 67 Query: 67 PLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124 ++ ++ FIG LQSNK + FD T+ R + A+ L+ + + L V I Sbjct: 68 HFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLI 127 Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184 Q+N E KSGI + + + +L + GLM IP F + ++A Sbjct: 128 QINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQMAVAF 187 Query: 185 --------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + LS+GM+ D E AIA+G+T VRIG+ IFG R Sbjct: 188 AGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARD 230 >3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} (A:22-239) Length = 218 Score = 96.4 bits (239), Expect = 2e-21 Identities = 21/218 (9%), Positives = 50/218 (22%), Gaps = 22/218 (10%) Query: 15 ENSAILAKR-PKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEW 72 N L +R L + + + L + L EA+ + Sbjct: 5 SNINYLKQRVESLGSHLRPHLXTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDL 64 Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132 + + + ++ + A + + + V+I++++ Sbjct: 65 LYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSDDHR 124 Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------KPHFYLLSEIAREC-- 184 + ++ + + GL K + R Sbjct: 125 GGIKPSDS----KLLTIAKTLGEHFTGLXTHAGGSYACNTEQGLKNFAKQECDAVRIARN 180 Query: 185 -------KLTKLSMGMTRDFELAIAS-GATSVRIGSGI 214 S+G T + VR G Sbjct: 181 NLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYT 218 >2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} (A:10-225) Length = 216 Score = 96.5 bits (239), Expect = 3e-21 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 24/223 (10%) Query: 12 QKIENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66 I ++ + K+ L+AV K K V + G F L EA + Sbjct: 2 DAIAHNTRVLKQMAGPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRD 61 Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126 + L +I + + + ++ V A + + ++ + + + Sbjct: 62 IGISQE--VLCWIWTPEQDF--RAAIDRNIDLAVISPAHA-----KALIETDAEHIRVSI 112 Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIA 181 + +SG+ + + + V G+ P+ Sbjct: 113 KIDSGLHRSGVDEQEWEGVFSALAAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRAL 172 Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + + + F VR G +G P Sbjct: 173 ALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEP 215 >2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* (A:31-242) Length = 212 Score = 96.1 bits (238), Expect = 3e-21 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 15/216 (6%) Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQEAKKKWIPL 68 + + ++ + + +VAV K + + F +L+EA + Sbjct: 1 RALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALRLR--- 57 Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128 + + + +S V E+ + L + S PV + + Sbjct: 58 AGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALE----EASLDEPVTVWMXL 113 Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNPKPHFYL----LSEIARE 183 + + G+ P Q + F Q ++ PK + E Sbjct: 114 DTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCE 173 Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 K + S+ + L S VR G ++G P Sbjct: 174 GKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSP 209 >3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} (A:16-238,A:376-395) Length = 243 Score = 94.6 bits (234), Expect = 9e-21 Identities = 20/227 (8%), Positives = 58/227 (25%), Gaps = 28/227 (12%) Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKI------RVALSCGQVIFAENKLQEAKKKW 65 ++ + + + AV K + + L EA + Sbjct: 2 DAAAHNLQEIREWTKAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELR 61 Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125 + + + + +G+ + + ++ D++ T+ + L V + Sbjct: 62 ---QADLTLPIWVLGAWDYSDL-KLFIDHDIVITIPSLAWLQ----NLPDFEGTLKVSLA 113 Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------HFYLL 177 ++TG + ++ + + QL++ + Sbjct: 114 IDTGMT-RIGFDKADEISAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRW 172 Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 E+ + + ++R G I G Sbjct: 173 QELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNV 219 >3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* (A:15-235) Length = 221 Score = 93.8 bits (232), Expect = 2e-20 Identities = 30/217 (13%), Positives = 67/217 (30%), Gaps = 16/217 (7%) Query: 15 ENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69 EN +R + +L AV K + + A G F L EA + Sbjct: 6 ENVQKECQRLPEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELR---E 62 Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 + + + V ++ + ++E + L + + L V+++V+T Sbjct: 63 AGVQDPILILSVVDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDT- 121 Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIAREC 184 + + P +TK V + + EG+ ++ + Sbjct: 122 GMGRIGFLTPEETKQAVRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVL 181 Query: 185 K--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + + + + +R G ++G P Sbjct: 182 EELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNP 218 >3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} (A:16-235) Length = 220 Score = 93.1 bits (230), Expect = 3e-20 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 20/223 (8%) Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKK-----IRVALSCGQVIFAENKLQEAKKKW 65 K + + K+ + +L K ++A CG A + L E Sbjct: 1 KSSLAYNVQYTKQVSGAKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIR 60 Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125 + D + +G + I S + + TVS S + I L V + Sbjct: 61 ---QAGIDDFILILGPIDVKYA-PIASKYHFLTTVSSLDWLK--SADKILGKEKLSVNLA 114 Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184 V+TG + + L + +G+ + NP H++ + Sbjct: 115 VDTGXNRIGVRSKKDLKDEIEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYEL 174 Query: 185 --------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + + G + + R+G+ ++G P Sbjct: 175 IDGLIXPRYVHVXNSGAAXYHSKELPGCNSIARVGTVVYGVEP 217 >1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Bacillus stearothermophilus} (A:15-232) Length = 218 Score = 92.3 bits (228), Expect = 5e-20 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 18/217 (8%) Query: 15 ENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69 +N L + D ++AV K D + R AL G A L EA Sbjct: 5 DNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALR---E 61 Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 K + + +G+ + + + + TV R S + + +++++T Sbjct: 62 KGIEAPILVLGASRPADA-ALAAQQRIALTVFRSDWLEEAS-ALYSGPFPIHFHLKMDT- 118 Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIAREC 184 + +TK V L + +EGL ++ + Sbjct: 119 GMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWL 178 Query: 185 KLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + + VR G ++G P Sbjct: 179 PSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAP 215 >1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:19-240) Length = 222 Score = 88.5 bits (218), Expect = 8e-19 Identities = 37/222 (16%), Positives = 64/222 (28%), Gaps = 20/222 (9%) Query: 14 IENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68 IE++ + + L+AV K ++ + AL G + EA Sbjct: 3 IEHNVRVLREHAGHAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADG 62 Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128 L ++ + L DV VS + L + + R V ++V+T Sbjct: 63 ITAP--VLAWLHPPGIDF--GPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDT 118 Query: 129 GYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------HFYLLSE 179 G G + + + + GLM P F Sbjct: 119 GLNRNGVGPAQFPAMLTALRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLA 178 Query: 180 IARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 ARE + + + VR G ++G P Sbjct: 179 QAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSP 220 >1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:15-237) Length = 223 Score = 86.6 bits (213), Expect = 2e-18 Identities = 23/222 (10%), Positives = 55/222 (24%), Gaps = 20/222 (9%) Query: 14 IENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68 + + + +L+AV K R A G +EA + Sbjct: 3 VRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAG 62 Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128 + + ++ + D+ +VS + R + + +T Sbjct: 63 IQGR--IMCWLWTPGGPW--REAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLXADT 118 Query: 129 GYE-IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----LLSEIAR 182 G + + + + + V G+ P ++ Sbjct: 119 GLGRNGCQPADWAELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLA 178 Query: 183 ECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 + + + + VR G ++G P Sbjct: 179 YAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSP 220 >1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} (A:11-221) Length = 211 Score = 85.0 bits (209), Expect = 7e-18 Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 16/216 (7%) Query: 12 QKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67 Q + + R +AV K + + AL+ FA ++E + Sbjct: 1 QALRH-NYRLAREATGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREA 59 Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127 ++ + + E++ D V + + S P+ + + Sbjct: 60 GIRQPIL---LLEGFFEASELELIVAHDFWCVVHCAWQLEAIE----RASLARPLNVWLX 112 Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-PPAMGNPKPHFYLLSEI---ARE 183 + + G P + R ++ +M A P A + Sbjct: 113 MDSGMHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQ 172 Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219 ++S+ + + VR G ++G P Sbjct: 173 GLEGEISLRNSPAVLGWPKVPSDWVRPGILLYGATP 208 >3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} (A:72-295) Length = 224 Score = 83.4 bits (205), Expect = 2e-17 Identities = 23/215 (10%), Positives = 55/215 (25%), Gaps = 23/215 (10%) Query: 28 VSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86 V L K + ++ R L G + + + + +G Sbjct: 1 VKLAPHGKTTXAPQLFRRQLETGAWGITLATAHQVRAAYHGGVSRVLXANQLVGRRNXXX 60 Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144 V+E++S F+ V + L ++ L V +++ + Sbjct: 61 VAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVPGGRTGVRDAAQRNAV 120 Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-----------LLSEIARECKLTKLSMGM 193 + R L + G+ + L+ + LS Sbjct: 121 LEAITRYPDTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAG 180 Query: 194 TRDFELAIASGA---------TSVRIGSGIFGERP 219 + +++ +R G + + Sbjct: 181 SAWYDVVAEEFVKASETGKVEVVLRPGCYLTHDVG 215 >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} (A:) Length = 264 Score = 29.6 bits (65), Expect = 0.39 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%) Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFEL---AIASGATSVRIGSGIFG 216 + LS I + K+ + + A GA V + + + G Sbjct: 165 LNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAXELGADGVLLNTAVSG 212 >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} (A:) Length = 248 Score = 28.9 bits (63), Expect = 0.60 Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 5/71 (7%) Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGA 205 Y +++ G PK + LL R C+ + GA Sbjct: 157 TGFVYLVSLYGTTG--AREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGA 214 Query: 206 TSVRIGSGIFG 216 V +GS + Sbjct: 215 NGVVVGSALVK 225 >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima} (A:) Length = 266 Score = 28.3 bits (61), Expect = 0.80 Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 3/59 (5%) Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216 I ++ + L ++ G F A +GA + S Sbjct: 176 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 234 >3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} (A:) Length = 217 Score = 27.9 bits (61), Expect = 1.1 Identities = 7/64 (10%), Positives = 16/64 (25%) Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSG 213 Q + L C P + S + + +++ + GS Sbjct: 130 QAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPNVICAGGSW 189 Query: 214 IFGE 217 + Sbjct: 190 LTES 193 >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} (A:) Length = 205 Score = 27.5 bits (60), Expect = 1.7 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 4/88 (4%) Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF--YLLSEIARECKLTKLSM 191 + + + Y+ L P G F L+ + LS Sbjct: 99 LVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRDRFRYLVLSG 158 Query: 192 GMTRD--FELAIASGATSVRIGSGIFGE 217 G+ + +V + SG+ Sbjct: 159 GLNPENVRSAIDVVRPFAVDVSSGVEAF 186 >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} (A:) Length = 265 Score = 27.3 bits (59), Expect = 1.8 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 3/60 (5%) Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL---AIASGATSVRIGSGIFG 216 + G + Y L I E K+ L A+ G +V + + I Sbjct: 162 PLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH 221 >3i1n_U 50S ribosomal protein L24; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_U 1vs6_U 3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S 2awb_U 2aw4_U 2i2v_U 2i2t_U* 2qao_U* 2qba_U* 2qbc_U* 2qbe_U ... (U:1-25,U:67-104) Length = 63 Score = 26.8 bits (60), Expect = 2.3 Identities = 6/18 (33%), Positives = 9/18 (50%) Query: 35 KMVDSKKIRVALSCGQVI 52 + D KK+R S + I Sbjct: 45 RFEDGKKVRFFKSNSETI 62 >1y0e_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; mannac-6-P epimerase, NANE, structural genomics, protein structure initiative; 1.95A {Staphylococcus aureus subsp} (A:1-207) Length = 207 Score = 26.8 bits (58), Expect = 2.4 Identities = 8/89 (8%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIP-------PAMGNPKPHFYLLSEIARECKLTK 188 + V + +L + + + F L ++ + Sbjct: 119 NVEIXADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKV 178 Query: 189 LSMGMTRD---FELAIASGATSVRIGSGI 214 ++ G ++ G +G I Sbjct: 179 IAEGNVITPDXYKRVXDLGVHCSVVGGAI 207 >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} (D:) Length = 253 Score = 26.7 bits (57), Expect = 2.8 Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 3/59 (5%) Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216 I ++ + L ++ G F A +GA + S Sbjct: 171 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* (A:36-258,A:310-335) Length = 249 Score = 26.5 bits (57), Expect = 2.8 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%) Query: 172 PHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216 ++ A K +S G D A +GA V +G + G Sbjct: 175 SAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG 222 >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} (A:) Length = 203 Score = 26.7 bits (58), Expect = 2.8 Identities = 7/88 (7%), Positives = 25/88 (28%), Gaps = 2/88 (2%) Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191 + + + + + L+ G+ + + ++ + Sbjct: 93 VGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAWAKPLLATGRRVILA 152 Query: 192 G--MTRDFELAIASGATSVRIGSGIFGE 217 G + E +A ++ + SG+ Sbjct: 153 GGIAPENLEEVLALRPYALDLASGVEEA 180 >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} (A:) Length = 216 Score = 26.5 bits (57), Expect = 2.9 Identities = 5/52 (9%), Positives = 7/52 (13%), Gaps = 2/52 (3%) Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTR--DFELAIASGATSVRIGSGIFG 216 + + G D L G I Sbjct: 145 GVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRD 196 >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} (A:) Length = 214 Score = 26.4 bits (57), Expect = 2.9 Identities = 4/65 (6%), Positives = 15/65 (23%) Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212 ++ P ++ + + ++ +A + GS Sbjct: 126 MDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGS 185 Query: 213 GIFGE 217 + Sbjct: 186 WLVPA 190 >1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} (A:) Length = 260 Score = 26.3 bits (56), Expect = 3.0 Identities = 6/26 (23%), Positives = 9/26 (34%) Query: 195 RDFELAIASGATSVRIGSGIFGERPC 220 D I GA + SG+ + Sbjct: 229 EDAVKMIMYGADRIGTSSGVKIVQGG 254 >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} (A:) Length = 211 Score = 26.4 bits (57), Expect = 3.5 Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 5/88 (5%) Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL--LSEIARECKLTKLSM 191 + + D R + + L + L + + + ++++ Sbjct: 105 QVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAV 164 Query: 192 GM---TRDFELAIASGATSVRIGSGIFG 216 ++ + G V +GS I Sbjct: 165 AGGISSQTVKDYALLGPDVVIVGSAITH 192 >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} (A:1-212,A:291-326) Length = 248 Score = 26.4 bits (57), Expect = 3.6 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 155 LNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIG 211 + EG F L+++++R + ++ G A A GA +V+ G Sbjct: 148 VIAEGXESGGHIGE--VTTFVLVNKVSRSVNIPVIAAGGIADGRGXAAAFALGAEAVQXG 205 Query: 212 SGIFG 216 + Sbjct: 206 TRFVA 210 >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} (A:) Length = 253 Score = 25.9 bits (55), Expect = 4.3 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%) Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216 I L+ +A ++ ++ G F A A+GA +V S Sbjct: 174 TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} (F:) Length = 252 Score = 25.9 bits (55), Expect = 4.5 Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 5/101 (4%) Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLS 178 E+ +G V + +L ++ + L Sbjct: 130 IDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTR 189 Query: 179 EIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFG 216 +A + ++ G F A +GA + S Sbjct: 190 MVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230 >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} (A:1-213) Length = 213 Score = 25.7 bits (55), Expect = 5.8 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%) Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGATSVRIGSGI 214 P+ L + + ++ G AI GA +V +GS I Sbjct: 163 PDTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAI 213 >3bpw_A Orotidine 5'-phosphate decarboxylase; P. falciparum, orotidine 5'- monophosphate decarboxylase, XMP, lyase, pyrimidine biosynthesis; HET: XMP; 1.70A {Plasmodium falciparum} PDB: 2qaf_A* 3bar_A* 2q8z_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A (A:) Length = 342 Score = 25.2 bits (54), Expect = 7.0 Identities = 6/82 (7%), Positives = 13/82 (15%), Gaps = 3/82 (3%) Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197 M + + + G + + G Sbjct: 236 MAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYILSPGIGAQNGDLHKT 295 Query: 198 E---LAIASGATSVRIGSGIFG 216 + + IG I Sbjct: 296 LTNGYHKSYEKILINIGRAITK 317 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} (A:) Length = 230 Score = 25.0 bits (53), Expect = 8.1 Identities = 7/22 (31%), Positives = 12/22 (54%) Query: 196 DFELAIASGATSVRIGSGIFGE 217 + I +GA ++ GS +FG Sbjct: 192 NAYKVIEAGANALVAGSAVFGA 213 >3kga_A MAP kinase-activated protein kinase 2; small molecule inhibitor, 3-aminopyrazole scaffold, scaffold hoping, ATP-site kinase inhibitor, induced FIT; HET: LX9; 2.55A {Homo sapiens} (A:1-98) Length = 98 Score = 24.9 bits (54), Expect = 8.5 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 47 SCGQVIFAENKL--QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK 104 G+V+ NK ++ K + + ++ IV + DV E + + Sbjct: 30 INGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCP--HIVRIVDVYENLYAGR 87 Query: 105 TASLLSLEMI 114 L+ +E + Sbjct: 88 KCLLIVMECL 97 >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transferase; HET: STU; 2.70A {Homo sapiens} (A:1-141) Length = 141 Score = 24.8 bits (53), Expect = 9.0 Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106 G+V+ NK + K L+ + ++++ IV + DV E + + Sbjct: 74 INGKVLQIFNKRTQEKFALKXLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC 133 Query: 107 SLLSLEMI 114 L+ E + Sbjct: 134 LLIVXECL 141 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} (A:) Length = 205 Score = 24.8 bits (53), Expect = 9.1 Identities = 10/87 (11%), Positives = 23/87 (26%), Gaps = 1/87 (1%) Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189 ++ G+ + +L L P + P+ + K Sbjct: 98 QFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMK-GPFPNVKFVPT 156 Query: 190 SMGMTRDFELAIASGATSVRIGSGIFG 216 + +G +V +GS + Sbjct: 157 GGVNLDNVCEWFKAGVLAVGVGSALVK 183 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0479 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,526,430 Number of extensions: 62997 Number of successful extensions: 270 Number of sequences better than 10.0: 1 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 41 Length of query: 222 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 137 Effective length of database: 2,082,624 Effective search space: 285319488 Effective search space used: 285319488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.8 bits)