RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780801|ref|YP_003065214.1| hypothetical protein
CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
(222 letters)
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 115 bits (289), Expect = 2e-27
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 22/234 (9%)
Query: 3 LGNKLQVFKQKIENSA--ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + + L+ VSK+ + I++ G F EN +Q
Sbjct: 13 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQ- 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+ D++ FIG LQ+NK ++ + ++ + + L +
Sbjct: 72 -ELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 130
Query: 120 ----LPVYIQVNTGYEIQKSGIMP----NQTKDFVILCRQKY----QLNVEGLMCIPPAM 167
+ +Q+NT +E QKSG+ + DF + KY L G +
Sbjct: 131 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHED 190
Query: 168 GNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L E ++ KLSMGM+ DF AI G VRIG+ IFG
Sbjct: 191 SKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFG 244
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 26.8 bits (58), Expect = 1.6
Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
I + K+ L + G + F L ++ + ++
Sbjct: 122 IMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAE 181
Query: 192 GMTR---DFELAIASGATSVRIGSGI 214
G ++ + G +G I
Sbjct: 182 GNVITPDMYKRVMDLGVHCSVVGGAI 207
>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Feline immunodeficiency
virus [TaxId: 11673]}
Length = 118
Score = 26.0 bits (57), Expect = 2.9
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 14 IENSAILAKRPKDS-VSLVAVSKMV----DSKKI----RVALSCGQVIFAENKLQEAKKK 64
IE IL KR +D+ L+A ++ + K I ++ L G K K
Sbjct: 3 IEGDGILDKRSEDAGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG 62
Query: 65 WIPLRKEWDVQLR 77
L D R
Sbjct: 63 LDVLGGVIDEGYR 75
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 25.8 bits (56), Expect = 3.0
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 10/94 (10%)
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
K+G + N + L ++ +M + P G +L +I ++
Sbjct: 112 KAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLD 171
Query: 194 TRD----------FELAIASGATSVRIGSGIFGE 217
+ +GA ++ GS +F
Sbjct: 172 PWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNA 205
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 25.2 bits (54), Expect = 5.0
Identities = 21/221 (9%), Positives = 52/221 (23%), Gaps = 15/221 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + V Q + + ++ + ++ + IR
Sbjct: 10 QLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPI 69
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K++ Q FI + + VI + + + F+
Sbjct: 70 IGII---KKDYPPQEPFITATMTEVDQLAALNIAVIAM----DCTKRDRHDGLDIASFIR 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ + ++ + G L E
Sbjct: 123 QVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPY---SRQEAGPDVALIEAL 179
Query: 182 RECKLTKLSMGMTR---DFELAIASGATSVRIGSGIFGERP 219
+ + ++ G + + G + +G I RP
Sbjct: 180 CKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT--RP 218
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
Sv40 [TaxId: 10633]}
Length = 348
Score = 24.8 bits (54), Expect = 6.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 165 PAMGNPKPHFYLLSE 179
P MGNP H LS+
Sbjct: 40 PQMGNPDEHQKGLSK 54
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 24.2 bits (51), Expect = 8.5
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
+ SGA+ +++ S + +
Sbjct: 268 ESGLQFLHSGASVLQVCSAVQNQDF 292
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 24.2 bits (52), Expect = 9.8
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
K+G++ N + +++ +M + P G + +I+ K+
Sbjct: 120 KAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLN 179
Query: 194 TRD----------FELAIASGATSVRIGSGIFG 216
I +GA ++ GS +FG
Sbjct: 180 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 212
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 761,579
Number of extensions: 33201
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 11
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)