HHsearch alignment for GI: 254780802 and conserved domain: COG0018
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.05 E-value=1.7e-08 Score=76.22 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=88.0
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCC----------------------HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----
Q ss_conf 474210000001222210012346----------------------335666553013321111134321011455----
Q gi|254780802|r 626 GPLEKMSKSKKNVIDPMKVIKSYG----------------------ADTARLFVLSDSPPDRDIIWSNKGVDSTYQ---- 679 (869)
Q Consensus 626 ~~g~KMSKSkGNvi~p~~~i~~yG----------------------aD~lRl~~~~~~~~~~d~~~s~~~i~~~~r---- 679 (869)
T Consensus 379 ~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~-~~~~~~~~Fd~d~~lsfegNt~p 457 (577)
T COG0018 379 GEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLS-RSRDKDYVFDWDKALSFEGNTAP 457 (577)
T ss_pred CCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEHHHHHHCCCCCCH
T ss_conf 87763422488657899999999887666765432115777777524067899886-28999947539999744599721
Q ss_pred HH----HHHHHHHHHHHCC-CCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67----7889999976302-466-------78975699999999999999999881688999999999999999999862
Q gi|254780802|r 680 FI----QQIWRLIYNAKDE-LQT-------SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI 747 (869)
Q Consensus 680 fl----~kl~~l~~~~~~~-~~~-------~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~ 747 (869)
T Consensus 458 YvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~~~ 537 (577)
T COG0018 458 YVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYNAC 537 (577)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 59999999999998544434553322210106827999999999849999999985695599999999999999998508
Q ss_pred C
Q ss_conf 1
Q gi|254780802|r 748 A 748 (869)
Q Consensus 748 ~ 748 (869)
T Consensus 538 ~ 538 (577)
T COG0018 538 P 538 (577)
T ss_pred C
T ss_conf 7