HHsearch alignment for GI: 254780802 and conserved domain: COG0018

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.39  E-value=6.4e-06  Score=58.51  Aligned_cols=151  Identities=20%  Similarity=0.296  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             689998999999998598036767888-8389980778978987400477977899999977718985567688140205
Q gi|254780802|r    7 SPQETDSIWQSAWYDSNIFKAENGKNK-KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGM   85 (869)
Q Consensus         7 ~~~~iE~kwq~~W~~~~~fe~~~~~~~-~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl   85 (869)
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~  168 (577)
T COG0018          89 SPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT  168 (577)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf             88999999999997333556744368998799987479999985233235368899999999983997667866785799


Q ss_pred             HHHHHH--------------------------------HH-HCC---------------CH-----HHHHHHHHHHHHHH
Q ss_conf             899999--------------------------------98-099---------------99-----99999999999999
Q gi|254780802|r   86 PAENAA--------------------------------RE-HNV---------------HP-----KMWTYQNIKVMRKQ  112 (869)
Q Consensus        86 Pie~~~--------------------------------~e-~~~---------------~~-----~~~~~~~i~~~k~~  112 (869)
T Consensus       169 Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~  248 (577)
T COG0018         169 QIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKET  248 (577)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999554101377772068899999999999748461267889999988647757899999999999999999


Q ss_pred             HHHCCCEEECCCCEECCCHHHH-HHHHHHHHHHHHCCCEEE--CCEEEECC
Q ss_conf             9981917664698214773599-999999999998896341--22133214
Q gi|254780802|r  113 LQSIGLSIDWSKDFATCDVDYY-HCQQLLFLDFMKHNVIVR--KTAQVNWD  160 (869)
Q Consensus       113 ~~~lG~~~DW~r~y~T~d~~y~-~~v~w~f~~L~~kGliyr--g~~pV~wc  160 (869)
T Consensus       249 l~~l~V~fD---~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~  296 (577)
T COG0018         249 LDRLGVKFD---VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL  296 (577)
T ss_pred             HHHHCCCCE---EEECCCHHHHCCCHHHHHHHHHHCCCEEEECCEEEEEHH
T ss_conf             999295300---132342655266499999999866977600995898643