HHsearch alignment for GI: 254780802 and conserved domain: COG0018
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.39 E-value=6.4e-06 Score=58.51 Aligned_cols=151 Identities=20% Similarity=0.296 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 689998999999998598036767888-8389980778978987400477977899999977718985567688140205
Q gi|254780802|r 7 SPQETDSIWQSAWYDSNIFKAENGKNK-KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGM 85 (869)
Q Consensus 7 ~~~~iE~kwq~~W~~~~~fe~~~~~~~-~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~Gl 85 (869)
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 89 SPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf 88999999999997333556744368998799987479999985233235368899999999983997667866785799
Q ss_pred HHHHHH--------------------------------HH-HCC---------------CH-----HHHHHHHHHHHHHH
Q ss_conf 899999--------------------------------98-099---------------99-----99999999999999
Q gi|254780802|r 86 PAENAA--------------------------------RE-HNV---------------HP-----KMWTYQNIKVMRKQ 112 (869)
Q Consensus 86 Pie~~~--------------------------------~e-~~~---------------~~-----~~~~~~~i~~~k~~ 112 (869)
T Consensus 169 Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~ 248 (577)
T COG0018 169 QIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKET 248 (577)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999554101377772068899999999999748461267889999988647757899999999999999999
Q ss_pred HHHCCCEEECCCCEECCCHHHH-HHHHHHHHHHHHCCCEEE--CCEEEECC
Q ss_conf 9981917664698214773599-999999999998896341--22133214
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCDVDYY-HCQQLLFLDFMKHNVIVR--KTAQVNWD 160 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d~~y~-~~v~w~f~~L~~kGliyr--g~~pV~wc 160 (869)
T Consensus 249 l~~l~V~fD---~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~ 296 (577)
T COG0018 249 LDRLGVKFD---VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL 296 (577)
T ss_pred HHHHCCCCE---EEECCCHHHHCCCHHHHHHHHHHCCCEEEECCEEEEEHH
T ss_conf 999295300---132342655266499999999866977600995898643