HHsearch alignment for GI: 254780802 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=96.77 E-value=0.0064 Score=37.95 Aligned_cols=89 Identities=21% Similarity=0.335 Sum_probs=68.1
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------HHHHHHHHHH-----------
Q ss_conf 838998077897898740047797789999997771898556768814020--------5899999980-----------
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFG--------MPAENAAREH----------- 94 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~G--------lPie~~~~e~----------- 94 (869)
T Consensus 19 ~~~~v~t-GisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVAT-GISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 8689834-768988732142898989999999999748865799981487510127999998689998709964348997
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEECC
Q ss_conf 99999999999999999999819176646
Q gi|254780802|r 95 NVHPKMWTYQNIKVMRKQLQSIGLSIDWS 123 (869)
Q Consensus 95 ~~~~~~~~~~~i~~~k~~~~~lG~~~DW~ 123 (869)
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E~~ 126 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVEFV 126 (521)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 66533599999999999998649864998