HHsearch alignment for GI: 254780802 and conserved domain: PRK12267
>PRK12267 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=582.01 Aligned_cols=455 Identities=24% Similarity=0.378 Sum_probs=358.1
Q ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88389980778978987400477977899999977718985567688140205899999980999999999999999999
Q gi|254780802|r 33 KKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ 112 (869)
Q Consensus 33 ~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~ 112 (869)
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~~g~tP~e~~d~~~~~~~~~ 82 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEEAGITPQEYVDEISAGFKDL 82 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99989968998889985545348789999999999846997598487687529999999985999999999999999999
Q ss_pred HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHC-CCCCCCCCCCCCCCCCC
Q ss_conf 99819176646982147735999999999999988963412213321477676778989843-85334564322334752
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVIN-GRGWRSDAPVEQRSLPQ 191 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~-g~~~~~~~~v~~~~~~~ 191 (869)
T Consensus 83 ~~~l~Is~D--~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~~ee~ 160 (644)
T PRK12267 83 WDKLDISYD--KFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELVKEES 160 (644)
T ss_pred HHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCC
T ss_conf 998699678--785489889999999999999988997866551232587543336244045786877899764640565
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCC
Q ss_conf 33430344454432100225543222221000145576754535556777777513653200134443232003302443
Q gi|254780802|r 192 WFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHS 271 (869)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~ 271 (869)
T Consensus 161 yffkL~~~~~~L~~~~~--------------------------------------------------------------- 177 (644)
T PRK12267 161 YFFRMSKYADRLLEFYE--------------------------------------------------------------- 177 (644)
T ss_pred EEEEHHHHHHHHHHHHH---------------------------------------------------------------
T ss_conf 14434667899999996---------------------------------------------------------------
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20345413145899988653111124555430255323786103777774157763112345453332221113467211
Q gi|254780802|r 272 ISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRD 351 (869)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D 351 (869)
T Consensus 178 -------------------------------------------~~p---~~---i------~p~---------------- 186 (644)
T PRK12267 178 -------------------------------------------ENP---DF---I------QPE---------------- 186 (644)
T ss_pred -------------------------------------------CCC---CE---E------CCH----------------
T ss_conf -------------------------------------------099---74---6------762----------------
Q ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
Q ss_conf 01221035443210167765554222112101233445830001356466548889999740467752022211100011
Q gi|254780802|r 352 MDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRD 431 (869)
Q Consensus 352 ~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~D 431 (869)
T Consensus 187 ---~----------------------------------------------~~ne~~~~~l~--------------~gL~D 203 (644)
T PRK12267 187 ---S----------------------------------------------RKNEMLNNFIK--------------PGLED 203 (644)
T ss_pred ---H----------------------------------------------HHHHHHHHHHH--------------CCCCC
T ss_conf ---5----------------------------------------------88799999985--------------77855
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1221123-222223422333468463474200011100100022454210024564211013676443564323456664
Q gi|254780802|r 432 WCISRQR-SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFVDS 510 (869)
Q Consensus 432 W~ISRqr-~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~dS 510 (869)
T Consensus 204 ~~ISR~~~~WGipvP~--d~--------------------------------------------------~~v~YVWfDA 231 (644)
T PRK12267 204 LAVSRTSFDWGIPVPS--DP--------------------------------------------------KHVVYVWIDA 231 (644)
T ss_pred CCEECCCCCCCCCCCC--CC--------------------------------------------------CEEEEEEECC
T ss_conf 4302477888885789--87--------------------------------------------------6079984224
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33322335556544101356641143344014555443320234555320134787322320022223553232243323
Q gi|254780802|r 511 SWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQL 590 (869)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~~~ 590 (869)
T Consensus 232 ~i~Yisa~g~~~~---~~~~~~~~Wp~~~h~iGkDii~FH---~i~wpamL~~~~~----~~p~~v~~hg~~~------- 294 (644)
T PRK12267 232 LLNYITALGYGSD---DDELFMKFWPADVHLVGKDILRFH---AIYWPIMLMALDL----PLPKHLFAHGWWL------- 294 (644)
T ss_pred CCCHHHHHCCCCC---CCHHHHHHCCHHHCCCCCCHHHHH---HHHHHHHHHHCCC----CCCCEEECCCEEE-------
T ss_conf 3003434138621---226677637313302685532366---8899999997699----9864451044187-------
Q ss_pred CCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 58700130620221025677754411048970640474210000001222210012346335666553013321111134
Q gi|254780802|r 591 EGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS 670 (869)
Q Consensus 591 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s 670 (869)
T Consensus 295 -----------------------------------~~g~KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs 339 (644)
T PRK12267 295 -----------------------------------MKDGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFS 339 (644)
T ss_pred -----------------------------------CCCCEECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
T ss_conf -----------------------------------178600553684223799987559404364644448878777789
Q ss_pred CCCHH---------HHHHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 32101---------1455677889999976302466---78975699999999999999999881688999999999999
Q gi|254780802|r 671 NKGVD---------STYQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVN 738 (869)
Q Consensus 671 ~~~i~---------~~~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n 738 (869)
T Consensus 340 ~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~ 419 (644)
T PRK12267 340 PEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALEELWKLIS 419 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999998899887777899999999887518867888778745699999999999999999971269999999999999
Q ss_pred HHHHHHHHHCCCCC-----CCCH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999986211000-----2217----9999999999999972234389999999828998
Q gi|254780802|r 739 VISKPLMEIAKKKS-----NADR----ISTIRYILEKLIIMMSPMIPHLAEECWQLLGNAG 790 (869)
Q Consensus 739 ~ls~~y~~~~k~~~-----~~~~----~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~ 790 (869)
T Consensus 420 ~~N~Yi~~~~PW~L~K~~~~~~~~~~vl~~~l~~~r~l~ilL~P~mP~~a~ki~~~Lgl~~ 480 (644)
T PRK12267 420 RANKYIDETAPWVLAKDEGKKERLGAVMAHLAESLRKVAVLLSPFMPETSKKIAEQLGLEI 480 (644)
T ss_pred HHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 9999888578876636866299999999999999999999706836579999999819997