HHsearch alignment for GI: 254780802 and conserved domain: PRK12268
>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=614.46 Aligned_cols=495 Identities=20% Similarity=0.287 Sum_probs=319.3
Q ss_pred CCEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 83899807789789874004779778-99999977718985567688140205899999980999999999999999999
Q gi|254780802|r 34 KKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ 112 (869)
Q Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~t~-~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~ 112 (869)
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~ 82 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKED 82 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 51898479988889855231114198999999999837998797584064749999999985999999999999999999
Q ss_pred HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99819176646982147735999999999999988963412213321477676778989843853345643223347523
Q gi|254780802|r 113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQW 192 (869)
Q Consensus 113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~ 192 (869)
T Consensus 83 ~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v-~G~cP~c~~~~~~Gd---- 155 (558)
T PRK12268 83 FEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYV-EGTCPYCGYEKARGD---- 155 (558)
T ss_pred HHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHH-CCCCCCCCCCCCCCC----
T ss_conf 9981983776--866898899999999999999889933013534368411231312331-540677687435673----
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 34303444544321002255432222210001455767545355567777775136532001344432320033024432
Q gi|254780802|r 193 FFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSI 272 (869)
Q Consensus 193 ~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~ 272 (869)
T Consensus 156 ----------------------------~---------------------------------------ce~c-------- 160 (558)
T PRK12268 156 ----------------------------Q---------------------------------------CDNC-------- 160 (558)
T ss_pred ----------------------------H---------------------------------------HHHC--------
T ss_conf ----------------------------2---------------------------------------5324--------
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03454131458999886531111245554302553237861037777741577631123454533322211134672110
Q gi|254780802|r 273 SEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM 352 (869)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~ 352 (869)
T Consensus 161 ---------------------------------g~~~~~~dli~p~~--------------~~~g~-------------- 179 (558)
T PRK12268 161 ---------------------------------GALLDPTDLINPRS--------------KISGS-------------- 179 (558)
T ss_pred ---------------------------------CCCCCHHHHCCCCC--------------CCCCC--------------
T ss_conf ---------------------------------76478577248856--------------77899--------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH----HH
Q ss_conf 12210354432101677655542221121012334458300013564665488899997404677520222111----00
Q gi|254780802|r 353 DFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKIN----FR 428 (869)
Q Consensus 353 ~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~~ 428 (869)
T Consensus 180 --------~~-------------------------e~~~~~~~f~~l~~~~~~l~~~~~~~~~-~p~~~~~~~~~~l~~~ 225 (558)
T PRK12268 180 --------TP-------------------------EFRETEHFFLDLPAFQEALRKWIESGTD-WPPNVLNFTLNWLKEG 225 (558)
T ss_pred --------CC-------------------------EEEECCCEEECCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCC
T ss_conf --------44-------------------------4773453021418778999999853887-7889999999998633
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 01112211232222234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r 429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV 508 (869)
Q Consensus 429 l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~ 508 (869)
T Consensus 226 l~D~~ISR~~~WGipiP~~~~~~~-~iy-------------VW~Da~~~yis~~~~~----~~~~~~----~~~~~~~W~ 283 (558)
T PRK12268 226 LKPRAITRDLPWGIPIPFEGAEGK-VFY-------------VWFDAPIGYISATKEW----AKRKGD----PEAWKEFWL 283 (558)
T ss_pred CCCCCCCCCCCCCEECCCCCCCCC-EEE-------------EECCCCCCHHHHHHHH----HHCCCC----HHHHHHHCC
T ss_conf 756545553878657885556896-798-------------8657872203433654----541698----567987278
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64333223355565441013566411433440145554433202345553201347873223200222235532322433
Q gi|254780802|r 509 DSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYY 588 (869)
Q Consensus 509 dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~ 588 (869)
T Consensus 284 ~~~~~------------------------~~~f~GkDii~F---H~v~wpa~l~a~~~-~~~lP-~~i~~~g~~------ 328 (558)
T PRK12268 284 DSDTK------------------------YYYFIGKDNIPF---HSVIWPAMLLGSGE-PYKLP-TAIVSSEYL------ 328 (558)
T ss_pred CCCCE------------------------EEEECCCCCCHH---HHHHHHHHHHHCCC-CCCCC-CEEEEEEEE------
T ss_conf 99842------------------------776436665434---78799999973379-87788-778775568------
Q ss_pred CCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 23587001306202210256777544110489706404742100000012222100123463356665530133211111
Q gi|254780802|r 589 QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDII 668 (869)
Q Consensus 589 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~ 668 (869)
T Consensus 329 ------------------------------------~~~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~ 372 (558)
T PRK12268 329 ------------------------------------TYEGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTD 372 (558)
T ss_pred ------------------------------------EECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf ------------------------------------74684114557887798999987490777899885488888888
Q ss_pred CCCCCHHHH---------HHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 343210114---------55677889999976302466---789756999999999999999998816889999999999
Q gi|254780802|r 669 WSNKGVDST---------YQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736 (869)
Q Consensus 669 ~s~~~i~~~---------~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f 736 (869)
T Consensus 373 fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~ 452 (558)
T PRK12268 373 FTWEEFIRRVNSELADKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMEL 452 (558)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999999999999999999999999986589789876798565999999999999999999751799999999999
Q ss_pred HHHHHHHHHHHCCCC---CCCC-HHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 999999998621100---0221-7999---9999999999972234389999999828998355178866
Q gi|254780802|r 737 VNVISKPLMEIAKKK---SNAD-RIST---IRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPK 799 (869)
Q Consensus 737 ~n~ls~~y~~~~k~~---~~~~-~~~~---l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~ 799 (869)
T Consensus 453 ~~~~N~y~~~~~PW~l~k~d~~~~~~vl~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~~~-~~~~~w~~ 521 (558)
T PRK12268 453 ARLANKYLNEKAPWKLAKTDPERAAAVLYTALNLVKLLAILLYPFLPFSAEKIWEMLGLPN-IEKLSWEE 521 (558)
T ss_pred HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC-CCCCCHHH
T ss_conf 9999999983798543168999999999999999999999986740399999999849997-75555144