HHsearch alignment for GI: 254780802 and conserved domain: PRK12268

>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=100.00  E-value=0  Score=614.46  Aligned_cols=495  Identities=20%  Similarity=0.287  Sum_probs=319.3

Q ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             83899807789789874004779778-99999977718985567688140205899999980999999999999999999
Q gi|254780802|r   34 KKYFVLEMFPYPSGNIHMGHLRNYVI-GDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQ  112 (869)
Q Consensus        34 ~kf~i~~~pPy~nG~lHiGH~~~~t~-~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~~i~~~k~~  112 (869)
T Consensus         3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~k~g~~p~e~~~~~~~~~~~~   82 (558)
T PRK12268          3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAEKEGVSPQELADKYHEEHKED   82 (558)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             51898479988889855231114198999999999837998797584064749999999985999999999999999999


Q ss_pred             HHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             99819176646982147735999999999999988963412213321477676778989843853345643223347523
Q gi|254780802|r  113 LQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPVEQRSLPQW  192 (869)
Q Consensus       113 ~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v~~~~~~~~  192 (869)
T Consensus        83 ~~~lgis~D~--f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v-~G~cP~c~~~~~~Gd----  155 (558)
T PRK12268         83 FEKLGISYDN--YTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYV-EGTCPYCGYEKARGD----  155 (558)
T ss_pred             HHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHH-CCCCCCCCCCCCCCC----
T ss_conf             9981983776--866898899999999999999889933013534368411231312331-540677687435673----


Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             34303444544321002255432222210001455767545355567777775136532001344432320033024432
Q gi|254780802|r  193 FFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFIAIAVDHSI  272 (869)
Q Consensus       193 ~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i~v~~~~~~  272 (869)
T Consensus       156 ----------------------------~---------------------------------------ce~c--------  160 (558)
T PRK12268        156 ----------------------------Q---------------------------------------CDNC--------  160 (558)
T ss_pred             ----------------------------H---------------------------------------HHHC--------
T ss_conf             ----------------------------2---------------------------------------5324--------


Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03454131458999886531111245554302553237861037777741577631123454533322211134672110
Q gi|254780802|r  273 SEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDM  352 (869)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~P~h~~~D~  352 (869)
T Consensus       161 ---------------------------------g~~~~~~dli~p~~--------------~~~g~--------------  179 (558)
T PRK12268        161 ---------------------------------GALLDPTDLINPRS--------------KISGS--------------  179 (558)
T ss_pred             ---------------------------------CCCCCHHHHCCCCC--------------CCCCC--------------
T ss_conf             ---------------------------------76478577248856--------------77899--------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH----HH
Q ss_conf             12210354432101677655542221121012334458300013564665488899997404677520222111----00
Q gi|254780802|r  353 DFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKIN----FR  428 (869)
Q Consensus       353 ~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~----~~  428 (869)
T Consensus       180 --------~~-------------------------e~~~~~~~f~~l~~~~~~l~~~~~~~~~-~p~~~~~~~~~~l~~~  225 (558)
T PRK12268        180 --------TP-------------------------EFRETEHFFLDLPAFQEALRKWIESGTD-WPPNVLNFTLNWLKEG  225 (558)
T ss_pred             --------CC-------------------------EEEECCCEEECCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCC
T ss_conf             --------44-------------------------4773453021418778999999853887-7889999999998633


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             01112211232222234223334684634742000111001000224542100245642110136764435643234566
Q gi|254780802|r  429 LRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTMDTFV  508 (869)
Q Consensus       429 l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvld~w~  508 (869)
T Consensus       226 l~D~~ISR~~~WGipiP~~~~~~~-~iy-------------VW~Da~~~yis~~~~~----~~~~~~----~~~~~~~W~  283 (558)
T PRK12268        226 LKPRAITRDLPWGIPIPFEGAEGK-VFY-------------VWFDAPIGYISATKEW----AKRKGD----PEAWKEFWL  283 (558)
T ss_pred             CCCCCCCCCCCCCEECCCCCCCCC-EEE-------------EECCCCCCHHHHHHHH----HHCCCC----HHHHHHHCC
T ss_conf             756545553878657885556896-798-------------8657872203433654----541698----567987278


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             64333223355565441013566411433440145554433202345553201347873223200222235532322433
Q gi|254780802|r  509 DSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYY  588 (869)
Q Consensus       509 dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~~~~~  588 (869)
T Consensus       284 ~~~~~------------------------~~~f~GkDii~F---H~v~wpa~l~a~~~-~~~lP-~~i~~~g~~------  328 (558)
T PRK12268        284 DSDTK------------------------YYYFIGKDNIPF---HSVIWPAMLLGSGE-PYKLP-TAIVSSEYL------  328 (558)
T ss_pred             CCCCE------------------------EEEECCCCCCHH---HHHHHHHHHHHCCC-CCCCC-CEEEEEEEE------
T ss_conf             99842------------------------776436665434---78799999973379-87788-778775568------


Q ss_pred             CCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf             23587001306202210256777544110489706404742100000012222100123463356665530133211111
Q gi|254780802|r  589 QLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDII  668 (869)
Q Consensus       589 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~  668 (869)
T Consensus       329 ------------------------------------~~~G~KmSKS~Gnvi~p~~~i~~yg~D~lRy~L~~~~~~~~D~~  372 (558)
T PRK12268        329 ------------------------------------TYEGQKFSKSRGWGIWVDDALERLPPDYLRYYLAANAPENSDTD  372 (558)
T ss_pred             ------------------------------------EECCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf             ------------------------------------74684114557887798999987490777899885488888888


Q ss_pred             CCCCCHHHH---------HHHHHHHHHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             343210114---------55677889999976302466---789756999999999999999998816889999999999
Q gi|254780802|r  669 WSNKGVDST---------YQFIQQIWRLIYNAKDELQT---SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL  736 (869)
Q Consensus       669 ~s~~~i~~~---------~rfl~kl~~l~~~~~~~~~~---~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f  736 (869)
T Consensus       373 fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~  452 (558)
T PRK12268        373 FTWEEFIRRVNSELADKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMEL  452 (558)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             79999999999999999999999999999986589789876798565999999999999999999751799999999999


Q ss_pred             HHHHHHHHHHHCCCC---CCCC-HHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             999999998621100---0221-7999---9999999999972234389999999828998355178866
Q gi|254780802|r  737 VNVISKPLMEIAKKK---SNAD-RIST---IRYILEKLIIMMSPMIPHLAEECWQLLGNAGLVAQQKWPK  799 (869)
Q Consensus       737 ~n~ls~~y~~~~k~~---~~~~-~~~~---l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~~~~i~~~~WP~  799 (869)
T Consensus       453 ~~~~N~y~~~~~PW~l~k~d~~~~~~vl~~~l~~lr~~~ilL~P~mP~~se~i~~~Lg~~~-~~~~~w~~  521 (558)
T PRK12268        453 ARLANKYLNEKAPWKLAKTDPERAAAVLYTALNLVKLLAILLYPFLPFSAEKIWEMLGLPN-IEKLSWEE  521 (558)
T ss_pred             HHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCC-CCCCCHHH
T ss_conf             9999999983798543168999999999999999999999986740399999999849997-75555144