HHsearch alignment for GI: 254780802 and conserved domain: cd00668
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=0 Score=508.33 Aligned_cols=324 Identities=37% Similarity=0.721 Sum_probs=253.3
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC----------CHHHHHHH
Q ss_conf 38998077897898740047797789999997771898556768814020589999998099----------99999999
Q gi|254780802|r 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV----------HPKMWTYQ 104 (869)
Q Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~----------~~~~~~~~ 104 (869)
T Consensus 1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T cd00668 1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKEGGIEGKKEEFLEDPKEWVDK 80 (334)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 98995599888886146675989999999999981699536068668656899999999687121057777539999999
Q ss_pred HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 99999999998191766469821477359999999999999889634122133214776767789898438533456432
Q gi|254780802|r 105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRSDAPV 184 (869)
Q Consensus 105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~Ev~~g~~~~~~~~v 184 (869)
T Consensus 81 ~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v~~~------------------------ 136 (334)
T cd00668 81 YIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPVRLT------------------------ 136 (334)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCC------------------------
T ss_conf 99999999999689768787611599999999999999999879989505667756------------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE
Q ss_conf 23347523343034445443210022554322222100014557675453555677777751365320013444323200
Q gi|254780802|r 185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFGASFI 264 (869)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~TtrPeTl~g~~~i 264 (869)
T Consensus 137 -----~~~f~~~~~~~~~l~~~~~~~------------------------------------------------------ 157 (334)
T cd00668 137 -----EQWFLKLSKLKDRLLEALEKN------------------------------------------------------ 157 (334)
T ss_pred -----CEEEEEHHHHHHHHHHHHHHC------------------------------------------------------
T ss_conf -----547778899999999999848------------------------------------------------------
Q ss_pred EEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 33024432034541314589998865311112455543025532378610377777415776311234545333222111
Q gi|254780802|r 265 AIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGC 344 (869)
Q Consensus 265 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~~V~~~~GTG~V~~~ 344 (869)
T Consensus 158 ----------------------------------------------------~--------~~----------------- 160 (334)
T cd00668 158 ----------------------------------------------------E--------IW----------------- 160 (334)
T ss_pred ----------------------------------------------------C--------CC-----------------
T ss_conf ----------------------------------------------------9--------87-----------------
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 34672110122103544321016776555422211210123344583000135646654888999974046775202221
Q gi|254780802|r 345 PFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK 424 (869)
Q Consensus 345 P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 424 (869)
T Consensus 161 p------------------------------------------------------~~~~~~~~~~l-------------- 172 (334)
T cd00668 161 P------------------------------------------------------ENVRNRFLNWL-------------- 172 (334)
T ss_pred C------------------------------------------------------HHHHHHHHHHH--------------
T ss_conf 7------------------------------------------------------89999999887--------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 11000111221123222223422333468463474200011100100022454210024564211013676443564323
Q gi|254780802|r 425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEALRETDTM 504 (869)
Q Consensus 425 ~~~~l~DW~ISRqr~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~dvl 504 (869)
T Consensus 173 -~~~~~d~~isR~~~wG~~~P~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 217 (334)
T cd00668 173 -ENGLRDWCISRQRYWGIPIPAWYCEDCGEV----------------------------------CPKCGKELKRETDVL 217 (334)
T ss_pred -HCCCCCCEEEEECCCCCCCCEEECCCCCCC----------------------------------CCCCCCCCCCCCCCE
T ss_conf -467877525733467875561332567755----------------------------------666531136876534
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45666433322335556544101356641143344014555443320234555320134787322320022223553232
Q gi|254780802|r 505 DTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVH 584 (869)
Q Consensus 505 d~w~dS~~~~~~~~~~~~~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g~~~~~~pf~~l~~~G~v~~ 584 (869)
T Consensus 218 ~~Wfds~~~~~~~~~~~~~~~~-~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~------~~~~~~~~~~~g~~~~ 290 (334)
T cd00668 218 DVWFDSGIGYLSALGYPNEEEG-FEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALF------GKPPPKNVLVHGLVLD 290 (334)
T ss_pred EEEECCCCCCCCCCCCCCCCCH-HHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCC------CCCCHHHEEECCCEEC
T ss_conf 4664175654322678643325-66876179816987156136329999999999844------9850877574201983
Q ss_pred CCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 24332358700130620221025677754411048970640474210000001222210012346335666553013321
Q gi|254780802|r 585 ETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPD 664 (869)
Q Consensus 585 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~ 664 (869)
T Consensus 291 -----------------------------------------~~G~KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~ 329 (334)
T cd00668 291 -----------------------------------------EGGRKMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEG 329 (334)
T ss_pred -----------------------------------------CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf -----------------------------------------899573886998889899998759489999999429988
Q ss_pred CCCCC
Q ss_conf 11113
Q gi|254780802|r 665 RDIIW 669 (869)
Q Consensus 665 ~d~~~ 669 (869)
T Consensus 330 ~d~~f 334 (334)
T cd00668 330 EDLNF 334 (334)
T ss_pred CCCCC
T ss_conf 89998