HHsearch alignment for GI: 254780802 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.73 E-value=4.3e-08 Score=73.41 Aligned_cols=49 Identities=33% Similarity=0.293 Sum_probs=40.8
Q ss_pred CEEEECCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 70640474210000001222210012346335666553013321111134
Q gi|254780802|r 621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWS 670 (869)
Q Consensus 621 ~~~~~~~g~KMSKSkGNvi~p~~~i~~yGaD~lRl~~~~~~~~~~d~~~s 670 (869)
T Consensus 165 ~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~~R~~lls-~hYR~~l~fs 213 (213)
T cd00672 165 TGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLS-SHYRSPLDYS 213 (213)
T ss_pred HHHHHHCCCEECCCCCCEEEHHHHHHCCCHHHHHHHHHH-CCCCCCCCCC
T ss_conf 457872756403457875269999843999999999982-7378987899