HHsearch alignment for GI: 254780802 and conserved domain: cd00812

>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00  E-value=0  Score=535.05  Aligned_cols=347  Identities=47%  Similarity=0.868  Sum_probs=264.6

Q ss_pred             CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC------------------
Q ss_conf             38998077897898740047797789999997771898556768814020589999998099------------------
Q gi|254780802|r   35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV------------------   96 (869)
Q Consensus        35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~------------------   96 (869)
T Consensus         1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~   80 (376)
T cd00812           1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE   80 (376)
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf             97998589888974546886989999999999995599704688456567899999999687477653011110001887


Q ss_pred             -----CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf             -----999999999999999999819176646982147735999999999999988963412213321477676778989
Q gi|254780802|r   97 -----HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ  171 (869)
Q Consensus        97 -----~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~E  171 (869)
T Consensus        81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~-----  155 (376)
T cd00812          81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW-----  155 (376)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE-----
T ss_conf             861279999999999999999998098737686643377789999999999999889889517555364677605-----


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             84385334564322334752334303-44454432100225543222221000145576754535556777777513653
Q gi|254780802|r  172 VINGRGWRSDAPVEQRSLPQWFFKIS-DLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILV  250 (869)
Q Consensus       172 v~~g~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~  250 (869)
T Consensus       156 ---------------------f~~~~~~~~~~~~~~~~~~~~--------------------------------------  176 (376)
T cd00812         156 ---------------------FLKYSTEWAERLLKDLEGLDT--------------------------------------  176 (376)
T ss_pred             ---------------------EECCCHHHHHHHHHHHHCCCC--------------------------------------
T ss_conf             ---------------------741667889998740420467--------------------------------------


Q ss_pred             EEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECC
Q ss_conf             20013444323200330244320345413145899988653111124555430255323786103777774157763112
Q gi|254780802|r  251 YTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIAN  330 (869)
Q Consensus       251 ~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~  330 (869)
T Consensus       177 ----------------~p~------------~~~~~---~~------~----------~~~~-----~~-~~--------  195 (376)
T cd00812         177 ----------------WPE------------EVKNM---QE------N----------WIGW-----LK-GW--------  195 (376)
T ss_pred             ----------------CCH------------HHHHH---HH------H----------HHHH-----CC-CC--------
T ss_conf             ----------------868------------89999---99------9----------8730-----24-65--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
Q ss_conf             34545333222111346721101221035443210167765554222112101233445830001356466548889999
Q gi|254780802|r  331 FVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHL  410 (869)
Q Consensus       331 ~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l  410 (869)
T Consensus       196 ----------------------~~--------------------------------------------------------  197 (376)
T cd00812         196 ----------------------AC--------------------------------------------------------  197 (376)
T ss_pred             ----------------------EE--------------------------------------------------------
T ss_conf             ----------------------25--------------------------------------------------------


Q ss_pred             HHHCCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             7404677520222111000111221123----222223422333468463474200011100100022454210024564
Q gi|254780802|r  411 EKQNIKNSPIGKRKINFRLRDWCISRQR----SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWK  486 (869)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~l~DW~ISRqr----~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~  486 (869)
T Consensus       198 ------~~~~~~~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~-------------------------------  240 (376)
T cd00812         198 ------ARRYGLGTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPV-------------------------------  240 (376)
T ss_pred             ------EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE-------------------------------
T ss_conf             ------4111115406555443413444566667700215975678641-------------------------------


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf             211013676443564323456664333223355565-4410135664114334401455544332023455532013478
Q gi|254780802|r  487 KIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHA-KDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIG  565 (869)
Q Consensus       487 ~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~-~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g  565 (869)
T Consensus       241 ---~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~~  317 (376)
T cd00812         241 ---CPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDEG  317 (376)
T ss_pred             ---CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             ---46667555665446886577630146667843344766879998428860688133542013679999999998646


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCC
Q ss_conf             73223200222235532322433235870013062022102567775441104897064047421000000122221001
Q gi|254780802|r  566 YIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVI  645 (869)
Q Consensus       566 ~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i  645 (869)
T Consensus       318 ~---~~~p~~v~~hG~l~------------------------------------------~~G~KMSKS~Gn~v~p~~~l  352 (376)
T cd00812         318 T---KEPPKGLRVQGMVL------------------------------------------LEGEKMSKSKGNVVTPDEAI  352 (376)
T ss_pred             C---CCCCCEEEECCCEE------------------------------------------CCCEECCCCCCCCCCHHHHH
T ss_conf             7---77982668757296------------------------------------------69966377899884989999


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             234633566655301332111113
Q gi|254780802|r  646 KSYGADTARLFVLSDSPPDRDIIW  669 (869)
Q Consensus       646 ~~yGaD~lRl~~~~~~~~~~d~~~  669 (869)
T Consensus       353 ~~yg~D~lR~~Ll~~~p~~~D~~F  376 (376)
T cd00812         353 KKYGADATRLYLLFAAPPESDANW  376 (376)
T ss_pred             HHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             885954999999944995568998