HHsearch alignment for GI: 254780802 and conserved domain: cd00812
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=0 Score=535.05 Aligned_cols=347 Identities=47% Similarity=0.868 Sum_probs=264.6
Q ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC------------------
Q ss_conf 38998077897898740047797789999997771898556768814020589999998099------------------
Q gi|254780802|r 35 KYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNV------------------ 96 (869)
Q Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~------------------ 96 (869)
T Consensus 1 k~~ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~ 80 (376)
T cd00812 1 KFYILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEE 80 (376)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHH
T ss_conf 97998589888974546886989999999999995599704688456567899999999687477653011110001887
Q ss_pred -----CHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCHHH
Q ss_conf -----999999999999999999819176646982147735999999999999988963412213321477676778989
Q gi|254780802|r 97 -----HPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQ 171 (869)
Q Consensus 97 -----~~~~~~~~~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~pV~wcp~~~t~la~~E 171 (869)
T Consensus 81 ~~~~~~p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~----- 155 (376)
T cd00812 81 IEKFADPKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQW----- 155 (376)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEE-----
T ss_conf 861279999999999999999998098737686643377789999999999999889889517555364677605-----
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 84385334564322334752334303-44454432100225543222221000145576754535556777777513653
Q gi|254780802|r 172 VINGRGWRSDAPVEQRSLPQWFFKIS-DLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILV 250 (869)
Q Consensus 172 v~~g~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~p~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (869)
T Consensus 156 ---------------------f~~~~~~~~~~~~~~~~~~~~-------------------------------------- 176 (376)
T cd00812 156 ---------------------FLKYSTEWAERLLKDLEGLDT-------------------------------------- 176 (376)
T ss_pred ---------------------EECCCHHHHHHHHHHHHCCCC--------------------------------------
T ss_conf ---------------------741667889998740420467--------------------------------------
Q ss_pred EEECCCCCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCEEEEEEECC
Q ss_conf 20013444323200330244320345413145899988653111124555430255323786103777774157763112
Q gi|254780802|r 251 YTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIAN 330 (869)
Q Consensus 251 ~TtrPeTl~g~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~P~~~~~~ipv~~~~ 330 (869)
T Consensus 177 ----------------~p~------------~~~~~---~~------~----------~~~~-----~~-~~-------- 195 (376)
T cd00812 177 ----------------WPE------------EVKNM---QE------N----------WIGW-----LK-GW-------- 195 (376)
T ss_pred ----------------CCH------------HHHHH---HH------H----------HHHH-----CC-CC--------
T ss_conf ----------------868------------89999---99------9----------8730-----24-65--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHH
Q ss_conf 34545333222111346721101221035443210167765554222112101233445830001356466548889999
Q gi|254780802|r 331 FVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHL 410 (869)
Q Consensus 331 ~V~~~~GTG~V~~~P~h~~~D~~~~~k~glpi~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~l 410 (869)
T Consensus 196 ----------------------~~-------------------------------------------------------- 197 (376)
T cd00812 196 ----------------------AC-------------------------------------------------------- 197 (376)
T ss_pred ----------------------EE--------------------------------------------------------
T ss_conf ----------------------25--------------------------------------------------------
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 7404677520222111000111221123----222223422333468463474200011100100022454210024564
Q gi|254780802|r 411 EKQNIKNSPIGKRKINFRLRDWCISRQR----SWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWK 486 (869)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l~DW~ISRqr----~WG~piPv~~~~~~~~~~~~~~~l~v~~~~d~~~~~~~~~l~~~~~~~ 486 (869)
T Consensus 198 ------~~~~~~~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~------------------------------- 240 (376)
T cd00812 198 ------ARRYGLGTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPV------------------------------- 240 (376)
T ss_pred ------EEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEE-------------------------------
T ss_conf ------4111115406555443413444566667700215975678641-------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 211013676443564323456664333223355565-4410135664114334401455544332023455532013478
Q gi|254780802|r 487 KIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHA-KDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHILKKIG 565 (869)
Q Consensus 487 ~~~~~~~~~~~~r~~dvld~w~dS~~~~~~~~~~~~-~~~~~~e~~~~~~P~D~~i~g~d~~~~~~~~~r~~~~~l~~~g 565 (869)
T Consensus 241 ---~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~~ 317 (376)
T cd00812 241 ---CPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDEG 317 (376)
T ss_pred ---CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ---46667555665446886577630146667843344766879998428860688133542013679999999998646
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCCCCCCCC
Q ss_conf 73223200222235532322433235870013062022102567775441104897064047421000000122221001
Q gi|254780802|r 566 YIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVI 645 (869)
Q Consensus 566 ~~~~~~pf~~l~~~G~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~KMSKSkGNvi~p~~~i 645 (869)
T Consensus 318 ~---~~~p~~v~~hG~l~------------------------------------------~~G~KMSKS~Gn~v~p~~~l 352 (376)
T cd00812 318 T---KEPPKGLRVQGMVL------------------------------------------LEGEKMSKSKGNVVTPDEAI 352 (376)
T ss_pred C---CCCCCEEEECCCEE------------------------------------------CCCEECCCCCCCCCCHHHHH
T ss_conf 7---77982668757296------------------------------------------69966377899884989999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 234633566655301332111113
Q gi|254780802|r 646 KSYGADTARLFVLSDSPPDRDIIW 669 (869)
Q Consensus 646 ~~yGaD~lRl~~~~~~~~~~d~~~ 669 (869)
T Consensus 353 ~~yg~D~lR~~Ll~~~p~~~D~~F 376 (376)
T cd00812 353 KKYGADATRLYLLFAAPPESDANW 376 (376)
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 885954999999944995568998