HHsearch alignment for GI: 254780802 and conserved domain: cd07956
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=96.08 E-value=0.11 Score=29.59 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HH----HHHHHHHHHHHCCCC--------CCCCHHHHHHHHH
Q ss_conf 2346335666553013321111134321011455----67----788999997630246--------6789756999999
Q gi|254780802|r 646 KSYGADTARLFVLSDSPPDRDIIWSNKGVDSTYQ----FI----QQIWRLIYNAKDELQ--------TSSTKKDISLISK 709 (869)
Q Consensus 646 ~~yGaD~lRl~~~~~~~~~~d~~~s~~~i~~~~r----fl----~kl~~l~~~~~~~~~--------~~~~~~D~~ils~ 709 (869)
T Consensus 1 e~Ig~~Airy~~L~-~~~~~~~~FD~d~~~~~~gnt~~YiQYa~aR~~SIl~k~~~~~~~~~~~~~~~l~~~~e~~Li~~ 79 (156)
T cd07956 1 EEVGVGAVKYQDLS-NKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred CCCCHHHHHHHHHH-CCCCCCCEECHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHH
T ss_conf 96423578889986-38999845529998623689851124899999999997245453322254200499899999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999881688999999999999999999862
Q gi|254780802|r 710 STKFLERIEENYQNLSFNKAVANIHELVNVISKPLMEI 747 (869)
Q Consensus 710 ~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~y~~~ 747 (869)
T Consensus 80 l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~ 117 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC 117 (156)
T ss_pred HHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 96572899999997070699999999999999999749