HHsearch alignment for GI: 254780802 and conserved domain: cd07958
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.90 E-value=1.1e-22 Score=173.34 Aligned_cols=112 Identities=34% Similarity=0.694 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3432101145567788999997630246-----67897569999999999999999988168899999999999999999
Q gi|254780802|r 669 WSNKGVDSTYQFIQQIWRLIYNAKDELQ-----TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHELVNVISKP 743 (869)
Q Consensus 669 ~s~~~i~~~~rfl~kl~~l~~~~~~~~~-----~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~~f~n~ls~~ 743 (869)
T Consensus 1 Wse~gIeg~~rFl~KlW~l~~~~~~~~~~~~~~~~~~~~d~~i~~~l~~~i~~vt~~~e~~~fN~aia~l~ef~N~l~~~ 80 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKY 80 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 98006999999999999999988863134556544667449999999999999999998522059999999999999884
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 9862110002217999999999999997223438999999982
Q gi|254780802|r 744 LMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 744 y~~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
T Consensus 81 ~~------~~~~~~~~~~~~l~~ll~lL~P~~PHiaEElW~~L 117 (117)
T cd07958 81 KK------KDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 61------44114999999999999998842479999998539