HHsearch alignment for GI: 254780802 and conserved domain: cd07959
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.81 E-value=9e-19 Score=146.65 Aligned_cols=114 Identities=23% Similarity=0.335 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 34321011455677889999976302466--789756999999999999999998816889999999-999999999998
Q gi|254780802|r 669 WSNKGVDSTYQFIQQIWRLIYNAKDELQT--SSTKKDISLISKSTKFLERIEENYQNLSFNKAVANI-HELVNVISKPLM 745 (869)
Q Consensus 669 ~s~~~i~~~~rfl~kl~~l~~~~~~~~~~--~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i-~~f~n~ls~~y~ 745 (869)
T Consensus 1 f~~~~a~~~~~~L~~~~~~~~e~~~~~~~~~~~~~~Dkw~ls~l~~~i~~~~~a~e~~~fr~a~~~~~~~l~~~~-~~Y~ 79 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL-DWYR 79 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 918789999999999999999998625778889776899999999999999999998788789999999999999-9999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf 62110002217999999999999997223438999999982
Q gi|254780802|r 746 EIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAEECWQLL 786 (869)
Q Consensus 746 ~~~k~~~~~~~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~L 786 (869)
T Consensus 80 ~~~~~~---~~~~~l~~~l~~~~~lLaP~~PhiaEEiW~~l 117 (117)
T cd07959 80 ERGGAG---MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 984554---14999999999999998473348699998639