HHsearch alignment for GI: 254780802 and conserved domain: cd07961

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94  E-value=2.8e-26  Score=198.15  Aligned_cols=136  Identities=21%  Similarity=0.358  Sum_probs=114.0

Q ss_pred             CCCCCHHHH-HHHHHHHHHHHHHHHC-----CCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             343210114-5567788999997630-----246--------67897569999999999999999988168899999999
Q gi|254780802|r  669 WSNKGVDST-YQFIQQIWRLIYNAKD-----ELQ--------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH  734 (869)
Q Consensus       669 ~s~~~i~~~-~rfl~kl~~l~~~~~~-----~~~--------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~  734 (869)
T Consensus         1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~   80 (183)
T cd07961           1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL   80 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             98889999983589999989999996221017995434556010558899999999999999999998011999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEECCCCCCC
Q ss_conf             999999999986211000221--------799999999999999722343899999998289-----9835517886659
Q gi|254780802|r  735 ELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----AGLVAQQKWPKLD  801 (869)
Q Consensus       735 ~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----~~~i~~~~WP~~d  801 (869)
T Consensus        81 ~F~~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~~~  160 (183)
T cd07961          81 EFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVD  160 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
T ss_conf             99999989999998899970566388899999999999999997576402439999998602468988803200689988


Q ss_pred             HHH
Q ss_conf             678
Q gi|254780802|r  802 PIL  804 (869)
Q Consensus       802 ~~~  804 (869)
T Consensus       161 ~~~  163 (183)
T cd07961         161 ESL  163 (183)
T ss_pred             CCC
T ss_conf             102