HHsearch alignment for GI: 254780802 and conserved domain: cd07961
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94 E-value=2.8e-26 Score=198.15 Aligned_cols=136 Identities=21% Similarity=0.358 Sum_probs=114.0
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHHHHC-----CCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 343210114-5567788999997630-----246--------67897569999999999999999988168899999999
Q gi|254780802|r 669 WSNKGVDST-YQFIQQIWRLIYNAKD-----ELQ--------TSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIH 734 (869)
Q Consensus 669 ~s~~~i~~~-~rfl~kl~~l~~~~~~-----~~~--------~~~~~~D~~ils~~~~~i~~v~~~~e~~~f~~ai~~i~ 734 (869)
T Consensus 1 F~e~~v~e~~R~f~nklwNa~RF~~~~~~~~~~~~~~~~~~~~~~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98889999983589999989999996221017995434556010558899999999999999999998011999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-----CCCEEECCCCCCC
Q ss_conf 999999999986211000221--------799999999999999722343899999998289-----9835517886659
Q gi|254780802|r 735 ELVNVISKPLMEIAKKKSNAD--------RISTIRYILEKLIIMMSPMIPHLAEECWQLLGN-----AGLVAQQKWPKLD 801 (869)
Q Consensus 735 ~f~n~ls~~y~~~~k~~~~~~--------~~~~l~~vl~~l~~lLaPi~PhiaEEiw~~Lg~-----~~~i~~~~WP~~d 801 (869)
T Consensus 81 ~F~~~l~~wYie~~K~rl~~~~~~~~~~~a~~~L~~vL~~~l~ll~P~~PFitEeiwq~l~~~~~~~~eSVhl~~~P~~~ 160 (183)
T cd07961 81 EFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEVD 160 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
T ss_conf 99999989999998899970566388899999999999999997576402439999998602468988803200689988
Q ss_pred HHH
Q ss_conf 678
Q gi|254780802|r 802 PIL 804 (869)
Q Consensus 802 ~~~ 804 (869)
T Consensus 161 ~~~ 163 (183)
T cd07961 161 ESL 163 (183)
T ss_pred CCC
T ss_conf 102