HHsearch alignment for GI: 254780802 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=100.00 E-value=3.5e-33 Score=245.38 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 03676788883899807789789874004779778999999777189855676881402058999999809999999999
Q gi|254780802|r 25 FKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQ 104 (869)
Q Consensus 25 fe~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~t~~Dv~aRy~rm~G~~Vl~~~G~d~~GlPie~~~~e~~~~~~~~~~~ 104 (869)
T Consensus 2 f~p-~~~~~v~~YicgPt~Y--~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~~g~~p~e~~d~ 78 (301)
T pfam01406 2 FVP-LHQGKVNMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAAR 78 (301)
T ss_pred CCC-CCCCEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 558-8799378997899068--9975223368999999999999749946999677863179999999809865379999
Q ss_pred HHHHHHHHHHHCCCEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCE
Q ss_conf 999999999981917664698214773599999999999998896341221
Q gi|254780802|r 105 NIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTA 155 (869)
Q Consensus 105 ~i~~~k~~~~~lG~~~DW~r~y~T~d~~y~~~v~w~f~~L~~kGliyrg~~ 155 (869)
T Consensus 79 ~~~~F~~~~~~L~I~~~d~~-~rtTe--hi~~v~~~i~~L~~kG~~Y~~~~ 126 (301)
T pfam01406 79 FITAYTKDMDALNVLPPDLE-PRVTE--HIDEIIEFIERLIKKGYAYVSDN 126 (301)
T ss_pred HHHHHHHHHHHHCCCCCCCC-CCCCC--CHHHHHHHHHHHHHCCCEEECCC
T ss_conf 99999988998498289868-77543--57999999999997797687269