>gnl|CDD|161857 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches. Length = 842

Score = 905 bits (2340), Expect = 0.0 Identities = 371/876 (42%), Positives = 540/876 (61%), Gaps = 47/876 (5%) Query: 6 YSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVAR 65 Y+ E + WQ W ++ +FK + NK KY++L+MFPYPSG +HMGH+RNY I DV++R Sbjct: 1 YNHIEIEEKWQQKWKENKVFKFTDDSNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSR 60 Query: 66 FMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKD 125 + R GY+VLHPMGWDAFG+PAENAA + +HP WTY+NI M+KQLQ++G S DW ++ Sbjct: 61 YYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDRE 120 Query: 126 FATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVI-NGRGWRSDAPV 184 ATCD +YY Q +FL+ + + K A VNW P + TVLANEQV +GR WR PV Sbjct: 121 IATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPV 180 Query: 185 EQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQ 244 E++ L QWF KI+ ++ELL+ +E L WPE VK MQ+NWIG+SEG+EI ++I D Sbjct: 181 EKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIA----DH 236 Query: 245 IEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTE 304 E+I V+TTRP+TIFG +++A+A +H + EK++ +N + F + QK T+ + Sbjct: 237 KEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKL 296 Query: 305 KKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIP 364 KKG++TGI HPL IP+++AN+V +YGTGA+ G P D+RD +FA+KY LPI Sbjct: 297 KKGVFTGIKAIHPLT-GEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKV 355 Query: 365 IMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRK 424 + I+ + + +AF+ DG+++NS +G+ ++EA +A+++ LEK+ GKRK Sbjct: 356 V----IDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEG-----KGKRK 406 Query: 425 INFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPG-NPLENHP 483 +N+RLRDW SRQR WG PIP+IHC+ G V +P+EDLPV LPE +++ G +PL Sbjct: 407 VNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQ 466 Query: 484 TWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKD-PINKELVRQWFPVDQYIG 542 W + C CG ALRETDTMDTF SSWYY+RY+ P D P +KE W PVD YIG Sbjct: 467 EWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIG 526 Query: 543 GIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDE 602 G EHA+LHLLYARF+ L IGY+ EPFK+L QGMV+ Y PDE Sbjct: 527 GAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKS-----PPDE 581 Query: 603 VILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSP 662 + R+ + + ++V+ EKMSKSK N IDP +++K +GAD RL+++ P Sbjct: 582 LTERDEK-----AKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGP 636 Query: 663 PDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISL-------ISKSTKFLE 715 + W++ G++ +F+ ++W L YN EL + L KFL+ Sbjct: 637 IAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLK 696 Query: 716 RIEENYQ-NLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPM 774 ++ E+ + SFN A++ + L+N + K AKK + L+ + ++SP Sbjct: 697 KVTEDLEKLESFNTAISAMMILLNALYK-----AKKDAL------YLEYLKGFLTVLSPF 745 Query: 775 IPHLAEECWQLLG-NAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDD 833 PHLAEE W+ LG ++ Q KWPK+D V + + +QVNGK +A TV + D++ Sbjct: 746 APHLAEELWEKLGSEPFIIKQAKWPKVDETALVEDKVTIVLQVNGKFKAKKTVPKDADEE 805 Query: 834 FIKKTVLELNVIKNILQGKSPKKIIIISKRIVNIVV 869 +++ + +K L+ K+ KK+I + ++VN V+ Sbjct: 806 QVEELAKQDPEVKKYLENKTIKKVIYVPGKLVNFVI 841

RPSBLAST alignment for GI: 254780802 and conserved domain: TIGR00396