BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(869 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 1806 bits (4677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/869 (100%), Positives = 869/869 (100%)
Query: 1 METRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIG 60
METRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIG
Sbjct: 1 METRSYSPQETDSIWQSAWYDSNIFKAENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIG 60
Query: 61 DVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120
DVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI
Sbjct: 61 DVVARFMRASGYSVLHPMGWDAFGMPAENAAREHNVHPKMWTYQNIKVMRKQLQSIGLSI 120
Query: 121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRS 180
DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRS
Sbjct: 121 DWSKDFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQVINGRGWRS 180
Query: 181 DAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSN 240
DAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSN
Sbjct: 181 DAPVEQRSLPQWFFKISDLSQELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSN 240
Query: 241 TIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVL 300
TIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVL
Sbjct: 241 TIDQIEEILVYTTRPETIFGASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVL 300
Query: 301 DKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL 360
DKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL
Sbjct: 301 DKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGL 360
Query: 361 PIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI 420
PIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI
Sbjct: 361 PIIPIMKRSINHSQDIEEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPI 420
Query: 421 GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLE 480
GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLE
Sbjct: 421 GKRKINFRLRDWCISRQRSWGCPIPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLE 480
Query: 481 NHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQY 540
NHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQY
Sbjct: 481 NHPTWKKIFCVKCGSEALRETDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQY 540
Query: 541 IGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKP 600
IGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKP
Sbjct: 541 IGGIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKP 600
Query: 601 DEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSD 660
DEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSD
Sbjct: 601 DEVILRNIEGENCAFRLSDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSD 660
Query: 661 SPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEEN 720
SPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEEN
Sbjct: 661 SPPDRDIIWSNKGVDSTYQFIQQIWRLIYNAKDELQTSSTKKDISLISKSTKFLERIEEN 720
Query: 721 YQNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAE 780
YQNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAE
Sbjct: 721 YQNLSFNKAVANIHELVNVISKPLMEIAKKKSNADRISTIRYILEKLIIMMSPMIPHLAE 780
Query: 781 ECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVL 840
ECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVL
Sbjct: 781 ECWQLLGNAGLVAQQKWPKLDPILEVNTDIILPIQVNGKKRACITVSMNTDDDFIKKTVL 840
Query: 841 ELNVIKNILQGKSPKKIIIISKRIVNIVV 869
ELNVIKNILQGKSPKKIIIISKRIVNIVV
Sbjct: 841 ELNVIKNILQGKSPKKIIIISKRIVNIVV 869
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 110 bits (275), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 191/866 (22%), Positives = 317/866 (36%), Gaps = 234/866 (27%)
Query: 43 PYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPA--------------- 87
P +G++HMGH N I D++ RF R G +VL G D G+
Sbjct: 46 PNVTGSLHMGHAFNTTIQDIMIRFERMRGKNVLWQPGTDHAGIATQITVESRLFAQSSLT 105
Query: 88 -ENAAREHNVHPKMWTY--QNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDF 144
E+ R+ + K+W + ++ + QL+ +G S DWS++ T D + + F+
Sbjct: 106 REDIGRDAFIE-KVWEWKKESGGSILSQLKRLGASCDWSRERFTMDEGMSNAVRNAFVVL 164
Query: 145 MKHNVIVRKTAQVNWDPVEQTVLANEQVI----NGRGWRSDAPVEQRSLPQWFFKISDLS 200
K +I R VNWDP +T +++ +VI +G W P+ + + K D
Sbjct: 165 YKDGLIYRDKRIVNWDPSLKTSVSDLEVIQKEVDGNLWYVRYPLVEGVTYRHPIKFDD-- 222
Query: 201 QELLDSIETLSEWPEKVKIMQKNWIGRSEGMEIRWEIVSNTIDQIEEILVYTTRPETIFG 260
+ I WE+ + I+V TTRPET+FG
Sbjct: 223 ----------------------------DAKPIDWEVR-------DYIIVSTTRPETMFG 247
Query: 261 ASFIAIAVDHSISEKLSCDNTDIKEFCDEEKQKGTSLSVLDKTEKKGIYTGIHVKHPLNP 320
+AIAV D+ KE K +L ++ +
Sbjct: 248 D--VAIAV--------HPDDYRYKELI----GKYATLPIVGR------------------ 275
Query: 321 NVVIPVYIANFVFMNYGTGAIFGCPFADQRDMDFAKKYGLPIIPIM----KRSINHSQDI 376
+IP+ + +G GA+ P D D + AK++GL I I+ K ++ ++
Sbjct: 276 --LIPIVSDVYPDPEFGDGAVKVTPAHDFNDFEIAKRHGLGFINILTPEAKIFLSENESF 333
Query: 377 EEGKAFSGDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKI----------- 425
E S + I S F +G+ A ++S LEK N+ + R I
Sbjct: 334 LENIVLSDEARNIFSEF-EGLDCFAARSKIVSLLEKSNLLDKTDSYRHIVPHCERSGVTI 392
Query: 426 ----------------------------NFRLRDW--------------CISRQRSWGCP 443
+F + W CISRQ WG
Sbjct: 393 EPCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLENIQPWCISRQIWWGHQ 452
Query: 444 IPVIHCQKCGIVELPKEDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCG--SEAL-RE 500
IPV + + ED L +D+ L +N T K +K G S+ L R+
Sbjct: 453 IPVWYSPDGKLFVENTED--AALRSAIDYYLSQ---DNDMTVKVRKMIKDGNISDLLKRD 507
Query: 501 TDTMDTFVDSS-WYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAH 559
D +DT+ S+ W + P + + ++P + G + +L AR
Sbjct: 508 EDVLDTWFSSALWPFASLGWPEQTAEL-----KTYYPTSVLVTGFD--ILFFWVARMMMM 560
Query: 560 ILKKIGYIEID--EPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRL 617
L + E EPF ++ +V R+ G
Sbjct: 561 GLYFMKDAEGKGIEPFHIVYMHALV-----------------------RDKNG------- 590
Query: 618 SDNSKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDST 677
+KMSKSK NV+DP+ VI YGAD R + + RDI + +
Sbjct: 591 -----------QKMSKSKGNVVDPIDVIDQYGADALRFYFSIMAVQGRDINLDLERIAGY 639
Query: 678 YQFIQQIWRLIYNAK---DELQTSSTKKDIS------LISKSTKFLERIEENYQNLSFNK 728
FI + W I +K S +D+ +I + + + +N FN
Sbjct: 640 RNFITKFWNAIRFSKMKNARHSVSFVPQDVKWIVNKWIIKRLATVINDVTVGMENHRFND 699
Query: 729 AVANIH-----ELVNVISKPLMEIAKKKSN---ADRISTIRYILEKLIIMMSPMIPHLAE 780
A ++ EL + + + I +K + ++ +S Y+L + ++ P+IP + E
Sbjct: 700 VSAVLYRFVWDELCDWYVEFIKSILNQKDSELVSETLSCFSYVLYNVCKLLHPIIPFVTE 759
Query: 781 ECWQL------LGNAGLVAQQKWPKL 800
+ + + GL+ +WP L
Sbjct: 760 DLYSHVSPQDDMDKQGLLCHAQWPSL 785
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 67.8 bits (164), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 629 EKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPDRDIIWSNKGVDS--TYQFIQQIWR 686
EK+SKS NVIDP++VI+ G D R F++ + +D + G+ I
Sbjct: 301 EKISKSLGNVIDPIEVIEEVGVDALRYFLVREIACGKDGFYDKDGLKKRVNADLANGIGN 360
Query: 687 LI----------YNAKDELQTSSTKKDISLISKSTKFLERIEENYQNLSFNKAVANIHEL 736
L+ Y+ + T+ D S++S ++ L+ I EN QN ++A+A + L
Sbjct: 361 LVSRSVSMILKDYDGMIPTPGAFTESDESILSVCSRVLQEIRENMQNQLIHRALAQVISL 420
Query: 737 VNVISKPLMEIAK----KKSNADRISTIRY----ILEKLIIMMSPMIPHLAEECWQLL 786
V+ + + + K KK+N DR ST+ Y ++ +L I++ +P LA + + +L
Sbjct: 421 VSEVDR-YFDAQKPWELKKTNPDRASTVLYVTVEVIRQLAILLQAFVPKLANKIFDIL 477
Score = 58.9 bits (141), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 8/188 (4%)
Query: 31 KNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPAENA 90
K ++K ++ YP+ H+GH +I DV+ARF R G VL G D G A
Sbjct: 2 KEREKLYISTAIAYPNAQPHIGHAYEMIIADVLARFHRLDGLDVLFTTGTDEHGQKIAKA 61
Query: 91 AREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSKDFATCDVDYYHCQQLLFLDFMKHNVI 150
A+ V K++ QN + R + +S D DF +H + +
Sbjct: 62 AQNAGVTTKVFVDQNSRNFRDMADVLDISYD---DFIRTTEKRHHDTCRILWKKISDKGD 118
Query: 151 VRKTAQVNWDPVEQTVLANEQVI----NGRGWRSDA-PVEQRSLPQWFFKISDLSQELLD 205
+ K W + N+ + +G+ + + PV+ +FF++S +LL
Sbjct: 119 IYKGCYSGWYSLRDEAYYNDDEVYKGADGQYYNAQHNPVQWMEEEGYFFRLSAYQDKLLS 178
Query: 206 SIETLSEW 213
E+ E+
Sbjct: 179 YYESHPEF 186
>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 963
Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/423 (23%), Positives = 157/423 (37%), Gaps = 98/423 (23%)
Query: 384 GDGIMINSSFLDGMTNTEALQAVMSHLEKQNIKNSPIGKRKINFRLRDWCISRQRSWGCP 443
GDG + S L + + + + I+N P DW +SRQR+WG P
Sbjct: 457 GDGSTLRSRALSEVEKIRFFPSSGKNRLRSMIENRP-----------DWLLSRQRNWGVP 505
Query: 444 IPVIHCQKCGIVELPK--EDLPVQLPEDLDFTLPGNPLENHPTWKKIFCVKCGSEA-LRE 500
I + +K G + L K D ++ +D G+ + F SE ++
Sbjct: 506 ICFFYNEK-GEILLDKAINDRIIKTFKD-----QGSDAWFSEGSRDFFLGDRASEPWIQS 559
Query: 501 TDTMDTFVDSSWYYMRYMTPHAKDPINKELVRQWFPVDQYIGGIEHAVLHLLYARFFAHI 560
D +D + DS+ + + KDP + +P D Y+ G + + +F H
Sbjct: 560 KDILDVWFDSACTHTILL---GKDP------KLAWPADVYLEGSDQ------HRGWFQHS 604
Query: 561 LKKIGYIEIDEPFKRLFTQGMVVHETYYQLEGIKKKYLKPDEVILRNIEGENCAFRLSDN 620
L + PF L T G V E
Sbjct: 605 LLESCATRGSTPFTSLITHGFSVDENG--------------------------------- 631
Query: 621 SKVVIGPLEKMSKSKKNVIDPMKVIKSYGADTARLFVLSDSPPD-----RDIIWSNKGVD 675
EKMSKSK NV+ P ++I GAD R + ++ D ++II +N +D
Sbjct: 632 --------EKMSKSKGNVVFPEEIISESGADVLRYWAVNSDYHDDQRLGKNIIQTN--ID 681
Query: 676 STYQFIQQI-WRLIYNAKDELQTSSTKKDISL----ISKSTKFLERIEENYQNLSFNKAV 730
+ + I W L A D S +L + + T+ + + E Y +F + V
Sbjct: 682 TYRKLRNTIRWMLGMLAHDTGNEPSLADMPALEQLMLHRLTELDQVVREAYDAFNFKEVV 741
Query: 731 ANIHELVNV-ISKPLMEIAKKKSNAD---------RISTIRYILEKLIIMMSPMIPHLAE 780
+ N +S +I K D I+ IR + LII ++P++P AE
Sbjct: 742 RQLTNFSNAELSSFYFDIRKDSLYCDSPSSLKRLSSIAVIRILCRHLIIWIAPILPFTAE 801
Query: 781 ECW 783
E W
Sbjct: 802 EAW 804
Score = 52.8 bits (125), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 30/168 (17%)
Query: 28 ENGKNKKKYFVLEMFPYPSGNIHMGHLRNYVIGDVVARFMRASGYSVLHPMGWDAFGMPA 87
E+ +K + + + PY +G+IH+GH N ++ DV+ R + ++ GWD G+P
Sbjct: 48 ESAVGRKNFTLHDGPPYANGHIHIGHALNKILKDVIVRSFQMRNFNACFVPGWDCHGLPI 107
Query: 88 E-----------------------NAAREHNVHPKMWTYQNIKVMRKQLQSIGLSIDWSK 124
E A R+ W +K+ K+ Q +G+ D+
Sbjct: 108 EWKVENEYLAKGKKKDDIPVNEFRQACRD---SASAW----VKIQSKEFQRLGIVGDFEN 160
Query: 125 DFATCDVDYYHCQQLLFLDFMKHNVIVRKTAQVNWDPVEQTVLANEQV 172
+ T + L + + I R + W EQT LA ++
Sbjct: 161 PYTTMTRESEAQIASELLKIAESDQIYRGIKPIMWSIAEQTTLAEAEI 208
Score = 25.0 bits (53), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 178 WRSDAPVEQRSLPQWFFKI-------SDLSQELLDSIETLSEWPEKVK 218
WRS P+ R+ QWF + S L L +E + +P K
Sbjct: 434 WRSKKPIIFRTTSQWFLHMDKKLGDGSTLRSRALSEVEKIRFFPSSGK 481
>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 586
Score = 37.7 bits (86), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSV 74
P+G +H+GH R V+GD +A M SGY V
Sbjct: 132 PTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 228
Score = 28.1 bits (61), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 339 GAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIE-EGKAFSGDGIMI 389
G G PFA A++ LP+I + K+S H Q + EG F G +++
Sbjct: 84 GETAGIPFATL----LAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131
>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 210
Score = 28.1 bits (61), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 305 KKGIYTGIH-------VKHPLNP-----NVVIPVYIANFVFMNYGTGAIFGCPFADQRDM 352
K GI TGI +K+ NP N V P +I + + G + P + +
Sbjct: 98 KHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRD---GGVLVRPGHTEASV 154
Query: 353 DFAKKYGLPIIPIMKRSINHSQDIEEGK 380
D K GLP I ++ +N I++GK
Sbjct: 155 DLCKITGLPPIAVICELVNDDGTIKKGK 182
>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 324
Score = 27.7 bits (60), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 549 LHLLYARF---FAHILKKIGYIEIDEP 572
+HL+Y+ + A +LKKI YIEI+ P
Sbjct: 178 IHLIYSGYKTPTAQVLKKISYIEIEYP 204
>gi|254780502|ref|YP_003064915.1| ribonucleotide-diphosphate reductase subunit alpha [Candidatus
Liberibacter asiaticus str. psy62]
Length = 954
Score = 25.4 bits (54), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 543 GIEHAVLHLLYARFFAHILKKIGYIEIDEPFKRLFTQGMVVHET 586
E+ L +LY R+F HI IE+ + F G+ + ET
Sbjct: 292 AFEYLGLQILYDRYFLHI--NGSRIEMPQAFFMRVAMGLALKET 333
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 24.3 bits (51), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 700 TKKDISLISKSTKFLERIEENYQNLSFNKAVA------NIHELVNVISKPLMEIAKKKSN 753
KKDI+ + TK E+++E+Y+ L A+ + E + I PL++ A K
Sbjct: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
Query: 754 ADRISTIRY 762
++ I Y
Sbjct: 427 GKEVAAIPY 435
>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 529
Score = 24.3 bits (51), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 294 GTSLSVLDKTEKKGIYTGIHVKHPLNPNVVIPVYIANFVFMNYGTGAI 341
GT L+ L+K +KK + G+ NP IP IA + TGA+
Sbjct: 114 GTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIA---VITSPTGAV 158
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,336
Number of Sequences: 1233
Number of extensions: 25813
Number of successful extensions: 90
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 27
length of query: 869
length of database: 328,796
effective HSP length: 82
effective length of query: 787
effective length of database: 227,690
effective search space: 179192030
effective search space used: 179192030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)