RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780803|ref|YP_003065216.1| hypothetical protein
CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)



>gnl|CDD|35027 COG5468, COG5468, Predicted secreted (periplasmic) protein
           [Function unknown].
          Length = 172

 Score = 62.0 bits (150), Expect = 7e-11
 Identities = 33/166 (19%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 2   LYKRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINF 61
           + + + R+ + F+   L  +C V P Y  +       +  I++         E+   + F
Sbjct: 1   MKRTLARVALAFSLATL-TACQVRPLYSGERAGTESGLASIEISPAGGRGGQEVRNQLIF 59

Query: 62  LTSTVR---TKNLYQLEVNIDSFTDHAIS-------NAFFKNIGRITLKAKYYFKEISGK 111
           L S          Y L +++  F             +    + GR+ + A Y   +    
Sbjct: 60  LFSGGAGEPANPQYYLSLSVSRFARGVRLVNVGNDTDRDRPSAGRVVMTADYVLTDAKDG 119

Query: 112 NILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDI 157
             +++    VT+ FD   Q+F+++R+ + +E +A +EL+E I +D+
Sbjct: 120 AEVHKGRRSVTASFDRPRQEFAKIRAQRDAENRAARELAEIIQLDL 165


>gnl|CDD|36212 KOG0994, KOG0994, KOG0994, Extracellular matrix glycoprotein Laminin
            subunit beta [Extracellular structures].
          Length = 1758

 Score = 29.7 bits (66), Expect = 0.41
 Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 79   DSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENN-TDVTSLFDFSDQQFSQLRS 137
               +  ++S      +   T   +   + ++      E   +D+T+    + +    L+ 
Sbjct: 1215 AILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQR 1274

Query: 138  HKSSEEKAIQELSEN 152
              +      +EL E 
Sbjct: 1275 EFNGLLTTYKELREQ 1289


>gnl|CDD|38804 KOG3598, KOG3598, KOG3598, Thyroid hormone receptor-associated
           protein complex, subunit TRAP230 [Transcription].
          Length = 2220

 Score = 28.1 bits (62), Expect = 1.2
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 86  ISNAFFKNIGRITLKAKYYFKEISGKNI---LYENNTDVTSLFDFSDQQFSQLRS----- 137
           I   F   IG    K           NI   + E + D+T L DF+ Q  ++L       
Sbjct: 875 IVYNFIDGIGGFLKKNCDDVPAPEVANIICEMMEFSLDITGLIDFAIQLLNELSVVEAEL 934

Query: 138 -HKSSE 142
             KSS+
Sbjct: 935 LLKSSD 940


>gnl|CDD|145960 pfam03095, PTPA, Phosphotyrosyl phosphate activator (PTPA) protein.
            Phosphotyrosyl phosphatase activator (PTPA) proteins
           stimulate the phosphotyrosyl phosphatase (PTPase)
           activity of the dimeric form of protein phosphatase 2A
           (PP2A). PTPase activity in PP2A (in vitro) is relatively
           low when compared to the better recognized
           phosphoserine/ threonine protein phosphorylase activity.
           The specific biological role of PTPA is unknown, Basal
           expression of PTPA depends on the activity of a
           ubiquitous transcription factor, Yin Yang 1 (YY1). The
           tumour suppressor protein p53 can inhibit PTPA
           expression through an unknown mechanism that negatively
           controls YY1.
          Length = 298

 Score = 26.7 bits (60), Expect = 3.3
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 7/39 (17%)

Query: 133 SQLRSHKSSEEKAI-------QELSENIYIDIISFIRTI 164
           +QL  H   + K+I       +   E +Y+  I+FI  +
Sbjct: 201 AQLLGHPYIKPKSIHNEEIVEEYRDEYLYLSCIAFINKV 239


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,910,340
Number of extensions: 92162
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 24
Length of query: 165
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 78
Effective length of database: 4,383,754
Effective search space: 341932812
Effective search space used: 341932812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.6 bits)