RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780803|ref|YP_003065216.1| hypothetical protein CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62] (165 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.11 Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 8/31 (25%) Query: 142 EEKAIQEL--SENIYID----IISFIR-TIE 165 E++A+++L S +Y D ++ I+ T+E Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-IKATME 47 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.1 bits (70), Expect = 0.14 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 32/96 (33%) Query: 5 RIL---RILVVFNFFLLINSCSVYPFY--YLKNQDRTEYIHPIKVLVVSKNNKNEIYRSI 59 RI R L N FL + S PF+ L ++ I K LV ++ Sbjct: 406 RIPFSERKLKFSNRFLPVAS----PFHSHLL--VPASDLI--NKDLV---------KNNV 448 Query: 60 NFLTSTVR-----T---KNLYQLEVNI-DSFTDHAI 86 +F ++ T +L L +I + D I Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-CI 483 Score = 26.8 bits (59), Expect = 2.7 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 13/66 (19%) Query: 100 KAKYYFKEISGKNIL---YENNTDVTSLF----------DFSDQQFSQLRSHKSSEEKAI 146 +A +FK+ G +IL N ++T F ++S F + K EK Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707 Query: 147 QELSEN 152 +E++E+ Sbjct: 1708 KEINEH 1713 Score = 24.9 bits (54), Expect = 9.0 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%) Query: 87 SNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQ 134 S F+ I LK + FKEI+ + Y ++ L S QF+Q Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SATQFTQ 1733 >3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* 1yla_A 2o25_A Length = 253 Score = 28.1 bits (62), Expect = 0.98 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 17/150 (11%) Query: 15 FFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKN--EIYRSINFLTSTVRT--KN 70 + L I YPF K + T+ HP + S +I + T+RT + Sbjct: 109 YQLEIKIPETYPFNPPKVRFITKIWHPN---ISSVTGAICLDILKDQWAAAMTLRTVLLS 165 Query: 71 LYQL--EVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFS 128 L L D D ++N + +N A+ + +G + T + + Sbjct: 166 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKK--IENLC 223 Query: 129 DQQF------SQLRSHKSSEEKAIQELSEN 152 F L S E A + L N Sbjct: 224 AAGFDRNAVIVALSSKSWDVETATELLLSN 253 >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 1q5k_A* 3i4b_A* 1r0e_A* 1gng_A* 2o5k_A* 2ow3_A* 3f7z_A* 1h8f_A* 3f88_A* 1uv5_A* 1o9u_A* Length = 420 Score = 26.0 bits (56), Expect = 4.8 Identities = 10/49 (20%), Positives = 19/49 (38%) Query: 104 YFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSEN 152 +F E+ N+ N D +LF+F+ Q+ S + + Sbjct: 339 FFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAA 387 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.138 0.381 Gapped Lambda K H 0.267 0.0496 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,369,703 Number of extensions: 56909 Number of successful extensions: 173 Number of sequences better than 10.0: 1 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 24 Length of query: 165 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 80 Effective length of database: 3,632,490 Effective search space: 290599200 Effective search space used: 290599200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.7 bits)