RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780803|ref|YP_003065216.1| hypothetical protein
CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62]
         (165 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.11
 Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 8/31 (25%)

Query: 142 EEKAIQEL--SENIYID----IISFIR-TIE 165
           E++A+++L  S  +Y D     ++ I+ T+E
Sbjct: 18  EKQALKKLQASLKLYADDSAPALA-IKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.1 bits (70), Expect = 0.14
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 32/96 (33%)

Query: 5   RIL---RILVVFNFFLLINSCSVYPFY--YLKNQDRTEYIHPIKVLVVSKNNKNEIYRSI 59
           RI    R L   N FL + S    PF+   L     ++ I   K LV           ++
Sbjct: 406 RIPFSERKLKFSNRFLPVAS----PFHSHLL--VPASDLI--NKDLV---------KNNV 448

Query: 60  NFLTSTVR-----T---KNLYQLEVNI-DSFTDHAI 86
           +F    ++     T    +L  L  +I +   D  I
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-CI 483



 Score = 26.8 bits (59), Expect = 2.7
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 13/66 (19%)

Query: 100  KAKYYFKEISGKNIL---YENNTDVTSLF----------DFSDQQFSQLRSHKSSEEKAI 146
            +A  +FK+  G +IL     N  ++T  F          ++S   F  +   K   EK  
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707

Query: 147  QELSEN 152
            +E++E+
Sbjct: 1708 KEINEH 1713



 Score = 24.9 bits (54), Expect = 9.0
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 87   SNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFSDQQFSQ 134
            S   F+ I    LK +  FKEI+  +  Y   ++   L   S  QF+Q
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL---SATQFTQ 1733


>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
           ligase, alternative splicing, cytoplasm, UBL
           conjugation, UBL conjugation pathway; 1.86A {Homo
           sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* 1yla_A
           2o25_A
          Length = 253

 Score = 28.1 bits (62), Expect = 0.98
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 15  FFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKN--EIYRSINFLTSTVRT--KN 70
           + L I     YPF   K +  T+  HP    + S       +I +       T+RT   +
Sbjct: 109 YQLEIKIPETYPFNPPKVRFITKIWHPN---ISSVTGAICLDILKDQWAAAMTLRTVLLS 165

Query: 71  LYQL--EVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTDVTSLFDFS 128
           L  L      D   D  ++N + +N       A+ +    +G  +     T    + +  
Sbjct: 166 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVSSPEYTKK--IENLC 223

Query: 129 DQQF------SQLRSHKSSEEKAIQELSEN 152
              F        L S     E A + L  N
Sbjct: 224 AAGFDRNAVIVALSSKSWDVETATELLLSN 253


>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
           HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
           1i09_A* 1j1c_A* 2jld_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A*
           1q3d_A* 1q4l_A* 1q5k_A* 3i4b_A* 1r0e_A* 1gng_A* 2o5k_A*
           2ow3_A* 3f7z_A* 1h8f_A* 3f88_A* 1uv5_A* 1o9u_A*
          Length = 420

 Score = 26.0 bits (56), Expect = 4.8
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 104 YFKEISGKNILYENNTDVTSLFDFSDQQFSQLRSHKSSEEKAIQELSEN 152
           +F E+   N+   N  D  +LF+F+ Q+ S      +        +   
Sbjct: 339 FFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAA 387


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.138    0.381 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,369,703
Number of extensions: 56909
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 24
Length of query: 165
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 80
Effective length of database: 3,632,490
Effective search space: 290599200
Effective search space used: 290599200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)