BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780803|ref|YP_003065216.1| hypothetical protein
CLIBASIA_03470 [Candidatus Liberibacter asiaticus str. psy62]
(165 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780803|ref|YP_003065216.1| hypothetical protein CLIBASIA_03470 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 165
Score = 328 bits (842), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MLYKRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSIN 60
MLYKRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSIN
Sbjct: 1 MLYKRILRILVVFNFFLLINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSIN 60
Query: 61 FLTSTVRTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTD 120
FLTSTVRTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTD
Sbjct: 61 FLTSTVRTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGKNILYENNTD 120
Query: 121 VTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDIISFIRTIE 165
VTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDIISFIRTIE
Sbjct: 121 VTSLFDFSDQQFSQLRSHKSSEEKAIQELSENIYIDIISFIRTIE 165
>gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 64
Score = 26.2 bits (56), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 52 KNEIYRSINFLTSTVRTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGK 111
+ EIYR +N +T + L ++E D F + N +N + +E+ GK
Sbjct: 5 RREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQTRN----------WLREVVGK 54
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 23.9 bits (50), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 86 ISNAFFKNIGRITLKAKYYFKEISGKNILYENNTD 120
+ +AF I I ++ F+ + GKN+L++ TD
Sbjct: 54 MGHAFNTTIQDIMIR----FERMRGKNVLWQPGTD 84
>gi|254780767|ref|YP_003065180.1| lipid-A-disaccharide synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 383
Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 18 LINSCSVYPFYYLKNQDRTEYIHPIKVLVVSKNNKNEIYRSINFLTSTVRT 68
L +S S+ Y +N+ R K+L++ + EIY+ + F S V +
Sbjct: 169 LSSSPSILEVYSQRNKQRNTPSQWKKILLLPGSRAQEIYKILPFFESAVAS 219
>gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 224
Score = 21.9 bits (45), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 52 KNEIYRSINFLTSTVRTKNLYQLEVNIDSFTDHAISNAFFKNIG 95
K+ I + + F + + LY+ + T+H +S F++N+G
Sbjct: 175 KDLIGQKLKFYRTVTQEDYLYKGRI-----TNHILSGEFYRNMG 213
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 21.2 bits (43), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 42 IKVLVVSKNNKNEIYRSINFLTST------VRTKNLY-QLEVNIDSFTDHAISNAFFKNI 94
IK+ V N K E +S+ + ST +R + L+ +L I+ DH I N+F K++
Sbjct: 1087 IKLSVFDSNTK-ESNKSLAVINSTLEFAHSIRERVLFDELIQGINHIDDHTIYNSFIKDL 1145
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.138 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,564
Number of Sequences: 1233
Number of extensions: 4573
Number of successful extensions: 15
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 8
length of query: 165
length of database: 328,796
effective HSP length: 68
effective length of query: 97
effective length of database: 244,952
effective search space: 23760344
effective search space used: 23760344
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 35 (18.1 bits)