HHsearch alignment for GI: 254780804 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.16 E-value=0.00055 Score=45.43 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=104.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------CCCEEEEEEHHHHHC---CHHHHHHHHHCC
Q ss_conf 13847999569965899999999997335666------------------773077620889641---899999987178
Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------DPFSLVVLNALEIQK---NISTFWNEINST 77 (352)
Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------~~~~~~~~~~~e~~~---d~~~l~~~~~t~ 77 (352)
T Consensus 23 ~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 23 LPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred CCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf 876-1003799999789999999999658664334552002244432025688659977321333300699999999860
Q ss_pred CCC---CCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 888---88239998477410-45789889885105656079998526543113566765431121014664420013588
Q gi|254780804|r 78 SLF---SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352)
Q Consensus 78 slF---~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352)
T Consensus 102 ~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~---~~il~tI--~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP---SKILPTI--RSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCH---HHCHHHH--HHHEEEEECCCCCHHHHHHH
T ss_conf 446566772699973203269888876754332488871699974985---5564787--75607887677418899998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98875430256675679999962001235568999999751
Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY 194 (352)
Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly 194 (352)
T Consensus 177 ~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 177 LE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred HH-----------HHHHHHHHHHHCCHHHHHCCHHHHHHHC
T ss_conf 50-----------7579999987040688734899999861