HHsearch alignment for GI: 254780804 and conserved domain: COG0470

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.16  E-value=0.00055  Score=45.43  Aligned_cols=159  Identities=16%  Similarity=0.192  Sum_probs=104.3

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------CCCEEEEEEHHHHHC---CHHHHHHHHHCC
Q ss_conf             13847999569965899999999997335666------------------773077620889641---899999987178
Q gi|254780804|r   19 LSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------DPFSLVVLNALEIQK---NISTFWNEINST   77 (352)
Q Consensus        19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------~~~~~~~~~~~e~~~---d~~~l~~~~~t~   77 (352)
T Consensus        23 ~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~  101 (325)
T COG0470          23 LPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFL  101 (325)
T ss_pred             CCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC
T ss_conf             876-1003799999789999999999658664334552002244432025688659977321333300699999999860


Q ss_pred             CCC---CCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             888---88239998477410-45789889885105656079998526543113566765431121014664420013588
Q gi|254780804|r   78 SLF---SKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL  153 (352)
Q Consensus        78 slF---~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~  153 (352)
T Consensus       102 ~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~---~~il~tI--~SRc~~i~f~~~~~~~~i~~  176 (325)
T COG0470         102 SESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP---SKILPTI--RSRCQRIRFKPPSRLEAIAW  176 (325)
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCH---HHCHHHH--HHHEEEEECCCCCHHHHHHH
T ss_conf             446566772699973203269888876754332488871699974985---5564787--75607887677418899998


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98875430256675679999962001235568999999751
Q gi|254780804|r  154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY  194 (352)
Q Consensus       154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly  194 (352)
T Consensus       177 ~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~  206 (325)
T COG0470         177 LE-----------DQGLEEIAAVAEGDARKAINPLQALAAL  206 (325)
T ss_pred             HH-----------HHHHHHHHHHHCCHHHHHCCHHHHHHHC
T ss_conf             50-----------7579999987040688734899999861