HHsearch alignment for GI: 254780804 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=98.78 E-value=1.6e-06 Score=62.29 Aligned_cols=235 Identities=13% Similarity=0.133 Sum_probs=151.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHH
Q ss_conf 9995699658999999999973356667730776208896418999999871788888823999847741-045789889
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLE 102 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~ 102 (352)
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~-f~~~sAv~~gv----kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAA-FEALSAVTSGV----KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCH----HHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHH
T ss_conf 5777899988889999998761776-69951523467----999999999999872588349987225333744565510
Q ss_pred HHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--HHHHCCCC-----CCHHHHHHHHH
Q ss_conf 885105656079998526543113566765431121014664420013588988--75430256-----67567999996
Q gi|254780804|r 103 EIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEE--SLLIGQKS-----ISKEAKQILLA 175 (352)
Q Consensus 103 ~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~--~~~~~g~~-----i~~~a~~~L~~ 175 (352)
T Consensus 126 p~vE~---G~iilIGATTENPsF~ln~AL--lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~ 200 (436)
T COG2256 126 PHVEN---GTIILIGATTENPSFELNPAL--LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVR 200 (436)
T ss_pred HHHCC---CEEEEEECCCCCCCEEECHHH--HHHHHEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 33248---868999626789871403888--6110415651699899999999998654137776556688899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC------CCHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2001235568999999751034443488888775310122------1114678----88764102369999999853110
Q gi|254780804|r 176 NLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHV------LYIEEII----NATIQGKIYNAIMLADFFLASKM 245 (352)
Q Consensus 176 ~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~------~~if~L~----dai~~~~~~~a~~~l~~l~~~g~ 245 (352)
T Consensus 201 ~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylaRmi~~Ge 280 (436)
T COG2256 201 LSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGE 280 (436)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf 62861999988999999862777524799999998655205677763478999999986126883789999999996688
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 0014589999999999999998302568989
Q gi|254780804|r 246 PSHALLHGFLQKFQLLEKIHIIKECSNISFE 276 (352)
Q Consensus 246 ~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~ 276 (352)
T Consensus 281 Dp~yiA-------RRlv~~As-EDIGlAdP~ 303 (436)
T COG2256 281 DPLYIA-------RRLVRIAS-EDIGLADPN 303 (436)
T ss_pred CHHHHH-------HHHHHHHH-HHCCCCCHH
T ss_conf 789999-------99999987-422578836