HHsearch alignment for GI: 254780804 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=99.81 E-value=2.1e-16 Score=127.70 Aligned_cols=314 Identities=11% Similarity=0.103 Sum_probs=239.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC------------------CCCCEEEEEEHH--HHHCCHH
Q ss_conf 87532100101384799956996589999999999733566------------------677307762088--9641899
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY------------------HDPFSLVVLNAL--EIQKNIS 68 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~------------------~~~~~~~~~~~~--e~~~d~~ 68 (352)
T Consensus 27 ~L~nal~~~ri~hA-YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR 105 (515)
T COG2812 27 TLSNALENGRIAHA-YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIR 105 (515)
T ss_pred HHHHHHHHCCCHHH-HHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHH
T ss_conf 99999980842333-65137777671049999999956889877772253166686514886410113644454867999
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420
Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352)
Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352)
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki---p~TI--lSRcq~f~fkri~~ 180 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI---PNTI--LSRCQRFDFKRLDL 180 (515)
T ss_pred HHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC---CHHH--HHCCCCCCCCCCCH
T ss_conf 999872468866664189983187643788888751113686674899853886768---4045--52122022257999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764
Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352)
Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352)
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~i~~ 258 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEAILK 258 (515)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 9999999999874487547999999999828974567778999997067--76569999999688778999999999982
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999
Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352)
Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352)
T Consensus 259 ~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~----~~~-~~~------~~~~~~~~~~~a~~~~~~~l~ 327 (515)
T COG2812 259 GDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVP----NEL-QLN------TTEIEERTKELASQISVLNLQ 327 (515)
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC----CHH-HCC------CHHHHHHHHHHHHHCCHHHHH
T ss_conf 279999999999998274899999999999999999986054----032-101------014669999999855889999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999953289998999999999999963
Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 (352)
Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a 342 (352)
T Consensus 328 ~~~~~~~~~~~e~~~-s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 328 RLYQLLLPGLKELKR-SLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHC
T ss_conf 999999999998613-8662579999999987503