HHsearch alignment for GI: 254780804 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.73 E-value=3.1e-14 Score=113.35 Aligned_cols=285 Identities=14% Similarity=0.092 Sum_probs=205.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH--CCH-HHHHHHHHCCCCCCC-CEE
Q ss_conf 7532100101384799956996589999999999733566677307762088964--189-999998717888888-239
Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNI-STFWNEINSTSLFSK-KKI 85 (352)
Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~--~d~-~~l~~~~~t~slF~~-~kl 85 (352)
T Consensus 28 L~~~i~~~~~ph--lLf~GppG~GKTt~a~~la~~l~~~~~~-~~~lelnasd~r~id~vr~~i~~~~~~~~~~~~~~ki 104 (318)
T PRK00440 28 LKSFVKEKNMPH--LLFAGPPGTGKTTAALALARELYGEYWR-ENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKI 104 (318)
T ss_pred HHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCC-CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 999998799866--9888959988999999999997698643-4768951645667178999999999726778997389
Q ss_pred EEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99847741-04578988988510565607999852654311356676543112101466442001358898875430256
Q gi|254780804|r 86 ILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKS 164 (352)
Q Consensus 86 Iii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~ 164 (352)
T Consensus 105 iiiDE~d~l~~~aq~aL~~~mE~~~~~~~fil~~n~~~k---ii~~i--~SRc~~i~f~~~~~~~i~~~L~~I~~~E~i~ 179 (318)
T PRK00440 105 IFLDEADNLTSDAQQALRRTMEMYSQTTRFILSCNYSSK---IIDPI--QSRCAVFRFSPLPKEAVIERLRYIAKNEGLE 179 (318)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCH--HHHHEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 998685532255678887643105666258863488333---76155--6551011157899999999999999985999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 67567999996200123556899999975103444348888877531012211146788876410236999999985-31
Q gi|254780804|r 165 ISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFL-AS 243 (352)
Q Consensus 165 i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~-~~ 243 (352)
T Consensus 180 ~~~~~l~~i~~~s~gdlR~ain~Lq~~~~~---~~~it~~~v~~~~~~~~~~~i~~ii~~~~~~~~~~~~~~l~~ll~~~ 256 (318)
T PRK00440 180 ITDDALEAIYYVSEGDMRKAINALQAAAAT---GKEVTEEAVYKITGTARPEEIREMINLALNGDFTEAREKLRELMIDY 256 (318)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 899999999986499899999999999974---89878999999976999899999999997089999999999999865
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 10001458999999999999999830256898999986089999768999999986499899999999999999995328
Q gi|254780804|r 244 KMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKK 323 (352)
Q Consensus 244 g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~ 323 (352)
T Consensus 257 g~~~~dIi~~l~~~l~~----------~----------------------------~~~~~~k~~ii~~ia~~e~rl~~- 297 (318)
T PRK00440 257 GLSGEDIIKQIHREVLR----------L----------------------------DIPEDLKVELIDAIGEADFRITE- 297 (318)
T ss_pred CCCHHHHHHHHHHHHHH----------C----------------------------CCCHHHHHHHHHHHHHHHHHHHC-
T ss_conf 99999999999999984----------5----------------------------99989999999999999999870-
Q ss_pred CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999899999999999996310
Q gi|254780804|r 324 KYLEKNIIFQTILYIAQTACK 344 (352)
Q Consensus 324 ~~~~~~il~~~ll~l~~~a~~ 344 (352)
T Consensus 298 g~~~~lqLe~lla~l~~l~k~ 318 (318)
T PRK00440 298 GANERIQLEALLAKLALLGKK 318 (318)
T ss_pred CCCHHHHHHHHHHHHHHHHCC
T ss_conf 799999999999999986187