HHsearch alignment for GI: 254780804 and conserved domain: PRK05563
>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.93 E-value=4e-22 Score=165.61 Aligned_cols=314 Identities=10% Similarity=0.097 Sum_probs=249.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC---C---------------CCCCCEEEEEEHHH--HHCCHHH
Q ss_conf 75321001013847999569965899999999997335---6---------------66773077620889--6418999
Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISI---T---------------YHDPFSLVVLNALE--IQKNIST 69 (352)
Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~---~---------------~~~~~~~~~~~~~e--~~~d~~~ 69 (352)
T Consensus 28 L~n~i~~~~i~h-ayLf~GprG~GKTs~Ari~akalnc~~~~~~~pC~~C~~C~~i~~g~~~Dv~Eidaas~~gvd~iR~ 106 (541)
T PRK05563 28 LKNQIINNRIAH-AYLFCGTRGTGKTSTAKIFAKAVNCLNPQDGEPCNECEICKKINEGLLMDVIEIDAASNNGVDDIRE 106 (541)
T ss_pred HHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 999998499320-4530387995899999999999579998889857514889998568988736624444478899999
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 999871788888823999847741-0457898898851056560799985265431135667654311210146644200
Q gi|254780804|r 70 FWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKI 148 (352)
Q Consensus 70 l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~ 148 (352)
T Consensus 107 ~~~~~~~~p~~~~~Kv~IiDEvhmls~~a~nallKtlEePp~~~~Filatte~~ki---~~tI--~SRcq~f~f~~i~~~ 181 (541)
T PRK05563 107 IIENVKYPPQEGKYKVYIMDEVHMLSQGAVNAFLKTLEEPPSNVIFILATTDPQKL---PITI--LSRCQRFDFKRIKVK 181 (541)
T ss_pred HHHHCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---CHHH--HHHEEEEEEEECCHH
T ss_conf 99761048767870599997723389999999999985487775699976984427---4556--742135775438999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 13588988754302566756799999620012355689999997510344434888887753101221114678887641
Q gi|254780804|r 149 HLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQG 228 (352)
Q Consensus 149 ~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~ 228 (352)
T Consensus 182 ~i~~~L~~I~~~E~i~~~~~al~lIa~~s~GsmRDAlslLdQ~is~~~--~~it~~~v~~~lG~~~~~~l~~l~~~i~~~ 259 (541)
T PRK05563 182 DIFKRLRKIVEEQGIFADDKSLNLIARMSDGAMRDALSILDQAISMGD--GKVDYDDVVSMLGLVTNENLFDITDSIIEK 259 (541)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 999999999998499987899999997459977889999999998359--986699999996899989999999999858
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 02369999999853110001458999999999999999830256898999986089999768999999986499899999
Q gi|254780804|r 229 KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRE 308 (352)
Q Consensus 229 ~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~ 308 (352)
T Consensus 260 d~~~~l~~~~~i~~~G~d~~~fl~dLi~~~R~lll~k~~-----~~~~~~l~-----~~~e~~~~l~~~a~~~~~~~l~~ 329 (541)
T PRK05563 260 DIEKSMEIIDDIVLSGKDIYNFIKDLITHFRNLLMVKVS-----SNPEEILD-----MSEENIELLKEQSKKIRIEEIMR 329 (541)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHC-----CCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 999999999999986999999999999999999997606-----97376521-----79999999999997089999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999953289998999999999999963
Q gi|254780804|r 309 TLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTA 342 (352)
Q Consensus 309 ~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a 342 (352)
T Consensus 330 ~~~~L~~~~~~lk~s-~~pr~~lEm~likl~~~~ 362 (541)
T PRK05563 330 CIRILQEAEEQSKWS-KQPRIYLELAIIKMCKIE 362 (541)
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC
T ss_conf 999999999996148-981499999999985346