HHsearch alignment for GI: 254780804 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=99.61 E-value=6.2e-12 Score=98.06 Aligned_cols=290 Identities=14% Similarity=0.107 Sum_probs=201.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC--CCEEEEEEHHH---H-HCCHHHHHHHHHCCCCCCC
Q ss_conf 8753210010138479995699658999999999973356667--73077620889---6-4189999998717888888
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD--PFSLVVLNALE---I-QKNISTFWNEINSTSLFSK 82 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~--~~~~~~~~~~e---~-~~d~~~l~~~~~t~slF~~ 82 (352)
T Consensus 15 ~L~~~i~~~rl~HA-yLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~~~~~I~vd~IR~l~~~~~~~p~~g~ 93 (313)
T PRK05564 15 RIDNSIIKGKFSHA-SLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPINKKSIGVDDIRNIIEEVNKKPYEGD 93 (313)
T ss_pred HHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999987998750-43279998509999999999982899778898658863322569998999999999840862589
Q ss_pred CEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 239998477410-457898898851056560799985265431135667654-311210146644200135889887543
Q gi|254780804|r 83 KKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLI 160 (352)
Q Consensus 83 ~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352)
T Consensus 94 ~KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~~~~------lLpTI~SRCQ~~~f~~l~~~~i~~~L~~~--- 164 (313)
T PRK05564 94 KKVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQ------ILDTIKSRCQIYKLNRLSKEDIEKFISYK--- 164 (313)
T ss_pred CEEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECCHHH------CCCHHHCCCEEEECCCCCHHHHHHHHHHH---
T ss_conf 569998077775899999984550368998589986498354------75778706535668998999999999986---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02566756799999620012355689999997510344434888887753101221114678887641023699999998
Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFF 240 (352)
Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l 240 (352)
T Consensus 165 -~~~~~~~~~~~~~~~s~G~~~~a~~~~~-------~~---~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~ 225 (313)
T PRK05564 165 -YNDIDEENKNSAIAFSDGIPGKVEKFIE-------DD---SLKDI--------RNMSLEILKDIDKSNINIIIKYENFL 225 (313)
T ss_pred -CCCCCHHHHHHHHHHCCCCHHHHHHHHH-------HH---HHHHH--------HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf -2589999999999982998799999840-------57---99999--------99999999999867999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 53110001458999999999999999830256898999986089999768999999986499899999999999999995
Q gi|254780804|r 241 LASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLA 320 (352)
Q Consensus 241 ~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~ 320 (352)
T Consensus 226 ~~~~~~~~~~l~~l~~~~rD~l~~k~----~~~~-~~~-------~n~d~~~~l~~~a~~~~~~~l~~~~~~l~~a~~~l 293 (313)
T PRK05564 226 ISYKENWEEILTCILSYIRDSLLFKE----TGNN-ELI-------INVDKIEDIKEISEKYSYKKLNKMIEIINDARNNL 293 (313)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCC----CCCC-CCE-------ECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98693499999999999999998515----5983-201-------68889999999985499999999999999999998
Q ss_pred HCCCCCHHHHHHHHHHHHHH
Q ss_conf 32899989999999999999
Q gi|254780804|r 321 RKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 321 K~~~~~~~~il~~~ll~l~~ 340 (352)
T Consensus 294 ~~-n~N~~L~le~lllkl~e 312 (313)
T PRK05564 294 SS-NTNSTLVFDSMLIKMQE 312 (313)
T ss_pred HH-CCCHHHHHHHHHHHHHH
T ss_conf 74-59989999999998843