HHsearch alignment for GI: 254780804 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.49 E-value=2.6e-05 Score=54.20 Aligned_cols=182 Identities=11% Similarity=0.100 Sum_probs=117.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHH
Q ss_conf 8479995699658999999999973356667730776208896418999999871788888823999847741---0457
Q gi|254780804|r 21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKV 97 (352)
Q Consensus 21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~ 97 (352)
T Consensus 45 ~~~l~i~G~~G~GKTHLL~A~~~~~~~~~---~~~~yl~~~~~~~~~~~~~~~l------~~~d~l~IDDi~~i~g~~~~ 115 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRGPELLDNL------EQYELVCIDDLDVIAGKADW 115 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHHHHHHHHHH------HHCCEEEEECHHHHCCCHHH
T ss_conf 88389988999988999999999998079---9679978999875449998624------22798989364554688599
Q ss_pred HHHHHHHHHCC-CCCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 89889885105-656079998526543113--566765431121014664420013588988754302566756799999
Q gi|254780804|r 98 LDCLEEIIIKN-ICNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILL 174 (352)
Q Consensus 98 ~~~l~~~~~~~-~~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~ 174 (352)
T Consensus 116 e~~lF~l~N~~~~~~~~llits~~~P~~l~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a~~rgi~l~~~v~~yl~ 195 (234)
T PRK05642 116 EEALFHLFNRLRDSGRRLLLAASKSPRELPVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFIL 195 (234)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999999983995999578795552300167999995781275148998999999999977546899989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
Q ss_conf 6200123556899999975103-444348888877531
Q gi|254780804|r 175 ANLGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC 211 (352)
Q Consensus 175 ~~~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~ 211 (352)
T Consensus 196 ~r~~R~~~~L~~~l~~Ld~~sl~~kr~iTiplvk~vLg 233 (234)
T PRK05642 196 TRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 97358899999999999999998389999999999838