HHsearch alignment for GI: 254780804 and conserved domain: PRK06090
>PRK06090 DNA polymerase III subunit delta'; Validated.
Probab=98.44 E-value=0.00018 Score=48.60 Aligned_cols=281 Identities=11% Similarity=0.106 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-------------------CCCCCEEEEEE--HHHH-HC
Q ss_conf 88753210010138479995699658999999999973356-------------------66773077620--8896-41
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT-------------------YHDPFSLVVLN--ALEI-QK 65 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~-------------------~~~~~~~~~~~--~~e~-~~ 65 (352)
T Consensus 14 ~l~~~~~~~-rl~H-A~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~k~I~vd 91 (319)
T PRK06090 14 NWKSGLDAE-RIPG-ALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEGKSITVE 91 (319)
T ss_pred HHHHHHHCC-CCCC-EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCHH
T ss_conf 999999869-9630-67667999857999999999998089999998877877999875899982366123356768799
Q ss_pred CHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999998717888888239998477410-45789889885105656079998526543113566765431121014664
Q gi|254780804|r 66 NISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYP 144 (352)
Q Consensus 66 d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~ 144 (352)
T Consensus 92 ~IR~l~~~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp~~t~fiL~t~~~~~---ll~TI--~SRCq~~~l~~ 166 (319)
T PRK06090 92 QIRQCNRLAQESSQLGGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKR---LLPTI--VSRCQQWVVTP 166 (319)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHH---CCCCH--HHCCCCCCCCC
T ss_conf 99999999754521069369998144434999999999984289988389987685120---86418--76144502899
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 42001358898875430256675679999962001235568999999751034443488888775310122111467888
Q gi|254780804|r 145 DNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 (352)
Q Consensus 145 ~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~da 224 (352)
T Consensus 167 p~~~~~~~WL~~q----~~~~~~~a----L~l~~g~Pl~a~~------------------~l~~~~~~~~~~l~~~l~~- 219 (319)
T PRK06090 167 PSTDQAMQWLKGQ----GISVPAYA----LKLNMGSPLKTLA------------------MMKEGELEEYHKLERQLVD- 219 (319)
T ss_pred CCHHHHHHHHHHH----CCCCHHHH----HHHCCCCCHHHHH------------------HHCCCHHHHHHHHHHHHHH-
T ss_conf 5999999999884----87557999----9884999499999------------------8638689999999999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 76410236999999985311000145899999999999999983025689899998608999976899999998649989
Q gi|254780804|r 225 TIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKN 304 (352)
Q Consensus 225 i~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~ 304 (352)
T Consensus 220 ~~~~~~~~~~~~~~~~-~--~~~~~~L~Wl~~lL~Da~K~~-----~gi~~~~~---------~---~-~~~~l~~l~~~ 278 (319)
T PRK06090 220 ALSGPVSDVLKCASLI-A--ADPLTALSWLWLLLTDAQKAH-----FGVQNEYI---------L---P-GSAALGPFTYS 278 (319)
T ss_pred HHHCCCCHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHH-----HCCCCCHH---------H---H-HHHHHHHCCHH
T ss_conf 9847884199998873-6--057778999999999999998-----60521066---------6---6-79999841899
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999953289-9989999999999999631
Q gi|254780804|r 305 LVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 305 ~l~~~l~~L~~~d~~~K~~~-~~~~~il~~~ll~l~~~a~ 343 (352)
T Consensus 279 ~L~~~~~~l~~~r~qL~~~~~lN~ELll~~~Ll~~~~~~c 318 (319)
T PRK06090 279 GLYASTAKLLELKEQLQQFSGLNTELLIMNWLIESREALC 318 (319)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999718872699999999999878743