HHsearch alignment for GI: 254780804 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.92 E-value=2.4e-21 Score=160.42 Aligned_cols=313 Identities=12% Similarity=0.149 Sum_probs=247.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEEHHH--HHCCHH
Q ss_conf 8753210010138479995699658999999999973356------------------66773077620889--641899
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT------------------YHDPFSLVVLNALE--IQKNIS 68 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~------------------~~~~~~~~~~~~~e--~~~d~~ 68 (352)
T Consensus 27 ~L~nai~~~rl~H-AyLFsGprG~GKTt~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~DviEidaasn~~VddIR 105 (560)
T PRK06647 27 TLKHSIEKNKIAN-AYIFSGPRGVGKTSSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDVIEIDGASNTSVQDVR 105 (560)
T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHH
T ss_conf 9999997499774-366328998789999999999965999999888878878888745999875764364548889999
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420
Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352)
Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352)
T Consensus 106 ~l~e~v~~~P~~~~yKV~IIDEahmLt~~A~NALLKtLEEPP~~~~FILaTte~~K---I~~TI--~SRCQ~f~Fk~i~~ 180 (560)
T PRK06647 106 QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK---LPATI--KSRCQHFNFRLLSL 180 (560)
T ss_pred HHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH---CHHHH--HHHHEEEECCCCCH
T ss_conf 99998632876687069996465655999999999986348875599997799476---84899--96510410555999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764
Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352)
Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352)
T Consensus 181 ~~I~~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~RDalslldq~i~~~--~~~i~~~~v~~~lG~~~~~~~~~l~~~i~~ 258 (560)
T PRK06647 181 EKIYEMLKKVCLEDDIKYEDEALKWIAYKSGGSVRDAYTLFDQIVSFS--NSDITLEQIRSKMGLTSDEFLEKLSSSILN 258 (560)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999998679887999999999977895888999999999607--997789999998689888999999999994
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999
Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352)
Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352)
T Consensus 259 ~d~~~~l~~~~~i~~~G~d~~~fl~~li~~~R~lll~k~~-----~~~~~~~~~--------~~e~i~~~a~~~d~~~l~ 325 (560)
T PRK06647 259 KDLKELLCVLDAIFLSGVSVEQFLLDCIEFFRELLFLKLG-----IKNEMFIGI--------KAESLPEKLLEFDLNQIE 325 (560)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-----CCHHHHCCC--------CHHHHHHHHHHCCHHHHH
T ss_conf 6999999999999980999999999999999999997614-----862433123--------188999999747999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999532899989999999999999631
Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352)
T Consensus 326 ~~~~il~~~~~dl~~-s~~Pk~~lEm~llRml~l~~ 360 (560)
T PRK06647 326 RAISVLLETYRDLQF-SVNPRYELEINFIKILRLKD 360 (560)
T ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHCCC
T ss_conf 999999989985786-89930889999999984678