HHsearch alignment for GI: 254780804 and conserved domain: PRK06674
>PRK06674 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.91 E-value=1.5e-20 Score=155.10 Aligned_cols=317 Identities=11% Similarity=0.144 Sum_probs=244.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---C---------------CCCEEEEEEHHH--HHCCHH
Q ss_conf 87532100101384799956996589999999999733566---6---------------773077620889--641899
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITY---H---------------DPFSLVVLNALE--IQKNIS 68 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---~---------------~~~~~~~~~~~e--~~~d~~ 68 (352)
T Consensus 27 ~L~nai~~~ri~H-AyLF~GprGtGKts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEiDaasn~gVd~IR 105 (563)
T PRK06674 27 TLQNALLQEKVSH-AYLFSGPRGTGKTSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDVLEIDAASNNGVDEIR 105 (563)
T ss_pred HHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHH
T ss_conf 9999998499650-343128998689999999999857999999887766878999855899877985255557879999
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999871788888823999847741-045789889885105656079998526543113566765431121014664420
Q gi|254780804|r 69 TFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNK 147 (352)
Q Consensus 69 ~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~ 147 (352)
T Consensus 106 ~i~~~v~~~P~~~~yKV~IIDeah~Lt~~A~NALLKtLEEPP~~viFILaTtep~k---i~~TI--~SRCQrf~F~ri~~ 180 (563)
T PRK06674 106 DIRDKVKFAPSAVEYKVYIIDEVHMLSIGAFNALLKTLEEPPGHVIFILATTEPHK---IPPTI--ISRCQRFDFRRISV 180 (563)
T ss_pred HHHHHHCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCHHH---CCHHH--HHHHEEEECCCCCH
T ss_conf 99998264886787379998545637999999999986388756499996599475---84788--73310312788999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 01358898875430256675679999962001235568999999751034443488888775310122111467888764
Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQ 227 (352)
Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~ 227 (352)
T Consensus 181 ~~i~~rL~~I~~~E~i~~~~~aL~~Ia~~a~GsmRDAlsiLdQ~~s~~~--~~i~~~~v~~~lG~~~~~~~~~l~~~i~~ 258 (563)
T PRK06674 181 NDIVERLSTVVTNEGTQVEDEALQIIARAADGGMRDALSLLDQAISFSD--ERVTTEDVLAVTGAVSQQYLGNLVECIRE 258 (563)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 9999999999998499987889999999769978899999999997159--97689999998689988999999999984
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 10236999999985311000145899999999999999983025689899998608999976899999998649989999
Q gi|254780804|r 228 GKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVR 307 (352)
Q Consensus 228 ~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~ 307 (352)
T Consensus 259 ~d~~~~l~~~~~~~~~G~d~~~~~~dl~~~~r~~l~~k~~~-----~~~~~~~~~----~~--~~~~~~~~~~~~~~~l~ 327 (563)
T PRK06674 259 NDVSRALRIIDEMMGQGKDPVRLMEDFIYYYRDMLLYQTAP-----QLEHMLERV----MV--DEQFRMLSEEMPPEVIY 327 (563)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHH----HH--HHHHHHHHHCCCHHHHH
T ss_conf 89999999999999879999999999999999988742379-----567654311----15--49999998528999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999953289998999999999999963102
Q gi|254780804|r 308 ETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACKN 345 (352)
Q Consensus 308 ~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~~ 345 (352)
T Consensus 328 ~~i~~l~~~~~~~r~s-~~~~~~lE~~~vkl~~~~~~~ 364 (563)
T PRK06674 328 EIIHTLSKSQQEMKWT-NHPRIFLEVVMVQLCQQFMMQ 364 (563)
T ss_pred HHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999996147-882188999999995303588