HHsearch alignment for GI: 254780804 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=99.62 E-value=9e-12 Score=97.01 Aligned_cols=303 Identities=12% Similarity=0.070 Sum_probs=219.9
Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCC------------------CCCEEEEEEHHH--HHCCHHHHH
Q ss_conf 321001013847999569965899999999997335666------------------773077620889--641899999
Q gi|254780804|r 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYH------------------DPFSLVVLNALE--IQKNISTFW 71 (352)
Q Consensus 12 ~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~------------------~~~~~~~~~~~e--~~~d~~~l~ 71 (352)
T Consensus 30 ~a~~~~r~~h-aylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d~~eidaas~~~v~~~r~l~ 108 (696)
T PRK06872 30 NGLKENRLHH-AYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFIDLIEIDAASRTKVEDTRELL 108 (696)
T ss_pred HHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9997198630-475117898888899999999867899999997888622576744787754675056557889999999
Q ss_pred HHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 9871788888823999847741-045789889885105656079998526543113566765431121014664420013
Q gi|254780804|r 72 NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL 150 (352)
Q Consensus 72 ~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l 150 (352)
T Consensus 109 ~~~~~~p~~~~~kvy~idevhmls~~~fnallktleepp~~v~f~latt~~~k~---p~t--ilsrc~~f~~~~~~~~~i 183 (696)
T PRK06872 109 DNVQYKPVVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKL---PIT--ILSRCMQFHLKALDQTQI 183 (696)
T ss_pred HHCCCCCCCCCEEEEEEEHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHH--HHHHHHHEECCCCCHHHH
T ss_conf 845457767754799970054438999999987502797544899843863227---488--987665300268999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 58898875430256675679999962001235568999999751034443488888775310122111467888764102
Q gi|254780804|r 151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 (352)
Q Consensus 151 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~ 230 (352)
T Consensus 184 ~~~l~~i~~~e~~~~~~~al~~~a~~a~gs~rdalsl~dqai~~~--~g~~~~~~v~~mlg~~~~~~~~~l~~a~~~~d~ 261 (696)
T PRK06872 184 AQHLEFILTQENIPFESPALEKLAKAAQGSIRDSLSLTDQAIAMS--NANITLDVVSNMLGLLDDNQPIDILYALQQGNG 261 (696)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCH
T ss_conf 999999999849977999999999975895677888999999975--896169999998588877799999999995589
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 36999999985311000145899999999999999983025689899998608999976899999998649989999999
Q gi|254780804|r 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 (352)
Q Consensus 231 ~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l 310 (352)
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~q~~~~-~~-~---------------~~~~~~~la~~~~~e~~ql~Y 324 (696)
T PRK06872 262 EKLMKVIQAVAEKGGDWDKLLGEIAEKLHQIAMLQLLPQ-KS-S---------------EETQLGFLAKHISPEDVQFFY 324 (696)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-CC-C---------------CHHHHHHHHHHCCHHHHHHHH
T ss_conf 999999999998688999999999999999999985864-57-8---------------547999999857999999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999532899989999999999999
Q gi|254780804|r 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 311 ~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352)
T Consensus 325 qi~l~g~~dl~~-apd~~~g~eM~lLRmlA 353 (696)
T PRK06872 325 QVMVSGRKELAF-APNRRIGVEMTLLRALA 353 (696)
T ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHH
T ss_conf 999841200456-99646749999999983