HHsearch alignment for GI: 254780804 and conserved domain: PRK06964
>PRK06964 DNA polymerase III subunit delta'; Validated.
Probab=98.95 E-value=4.7e-06 Score=59.10 Aligned_cols=269 Identities=11% Similarity=0.119 Sum_probs=159.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHCCC----C-----------------CCCCEEEEEE-----------------
Q ss_conf 0138479995699658999999999973356----6-----------------6773077620-----------------
Q gi|254780804|r 18 FLSHFVFIFYGSDKGLIFELINQFKKNISIT----Y-----------------HDPFSLVVLN----------------- 59 (352)
Q Consensus 18 ~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~----~-----------------~~~~~~~~~~----------------- 59 (352)
T Consensus 19 rl~HA-~Lf~Gp~G~Gk~~lA~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~Pe~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 19 RWPHA-LLLHGQAGIGKLAFAQHLAQGLLCETPQPNGEPCGTCAACTWFAQGNHPDYRIVRPEALAAEAPGAADDAKAAD 97 (342)
T ss_pred CHHEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCHHHHHH
T ss_conf 71305-76579998679999999999983899998889786777788886279997455340021022333210010111
Q ss_pred -----------HHHHH-CCHHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH
Q ss_conf -----------88964-189999998717888888239998477410-45789889885105656079998526543113
Q gi|254780804|r 60 -----------ALEIQ-KNISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 (352)
Q Consensus 60 -----------~~e~~-~d~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~k 126 (352)
T Consensus 98 ~~~~~~~~~~~~~~I~idqiR~l~~~l~~~~~~g~~kVviI~~Ae~mn~~aaNalLK~LEEPp~~~~~iL~~~~~~~--- 174 (342)
T PRK06964 98 ADEGGKKTRAPSKEIKIEQVRALLDFCGVGSHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGVVFLLVSARIDR--- 174 (342)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH---
T ss_conf 22210123565564549999999999700754588449998277873899999999972379878489998699254---
Q ss_pred HHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 5667654-311210146644200135889887543025667567999996200123556899999975103444348888
Q gi|254780804|r 127 LRKIAEK-FTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQH 205 (352)
Q Consensus 127 l~k~~e~-~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~d 205 (352)
T Consensus 175 ---llpTI~SRcq~~~~~~~~~~~~~~~L~~----~~v~---~a~~lla-~a~G~p~~A---l---~l~~~~~----~~~ 233 (342)
T PRK06964 175 ---LLPTILSRCRQWPMTVPAPEAAAAWLAA----QGVA---DANALLA-EAGGAPLAA---L---ALASDEN----RPL 233 (342)
T ss_pred ---CCHHHHHCCEEECCCCCCHHHHHHHHHH----CCCC---CHHHHHH-HCCCCHHHH---H---HHHCCCH----HHH
T ss_conf ---8368876764302899599999999987----3986---3999998-809998999---9---8716735----999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
Q ss_conf 87753101221114678887641023699999998531100014589999999999999998302568989999860899
Q gi|254780804|r 206 VKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKN 285 (352)
Q Consensus 206 I~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p 285 (352)
T Consensus 234 ~~~------------~l~~L~~~~~~~~~~~ae~~--~k~~~~~~l~~l~~w~~DlL~~~~----~~~----------~~ 285 (342)
T PRK06964 234 RDW------------TLGQLAAGAACDAFACGETL--QKLPVPAVLGWLQRWLYDLLAQRL----AGA----------PR 285 (342)
T ss_pred HHH------------HHHHHHCCCCCCHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHH----CCC----------CC
T ss_conf 999------------99998643325799999998--447899999999999999999982----598----------11
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9976899999998649989999999999999999532899989999999999999
Q gi|254780804|r 286 IIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 286 ~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352)
T Consensus 286 ~~~~~~~~l~~lA~~~~~~~L~~~~~~l~~~r~~l~~-nvN~~L~lE~LlL~~~e 339 (342)
T PRK06964 286 YFPAQRAALARCAAAADANAFARFAKAVTRQRAVENH-PLAARLVFEELFLGYRE 339 (342)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHH
T ss_conf 2677999999988508999999999999999998629-98779999999999999