HHsearch alignment for GI: 254780804 and conserved domain: PRK08699
>PRK08699 DNA polymerase III subunit delta'; Validated.
Probab=99.03 E-value=2.7e-06 Score=60.72 Aligned_cols=273 Identities=11% Similarity=0.080 Sum_probs=160.3
Q ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC---------------------CCCCEEEEE------EHH---HH-HCC
Q ss_conf 01384799956996589999999999733566---------------------677307762------088---96-418
Q gi|254780804|r 18 FLSHFVFIFYGSDKGLIFELINQFKKNISITY---------------------HDPFSLVVL------NAL---EI-QKN 66 (352)
Q Consensus 18 ~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~---------------------~~~~~~~~~------~~~---e~-~~d 66 (352)
T Consensus 19 rl~HA-~L~~Gp~G~Gk~~~A~~~A~~llC~~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~~g~~~~~I~idq 97 (325)
T PRK08699 19 RRPNA-WLFVGKKGTGKTAFARFAAKALLCETPAPGCKPCGECMSCHLFGQGSHPDFYEITPLADEPENGRKLLQIKIDA 97 (325)
T ss_pred CCCEE-EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHH
T ss_conf 50117-97579999789999999999982899988899898888899986599999688513445300166556676999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999998717888888239998477410-457898898851056560799985265431135667654311210146644
Q gi|254780804|r 67 ISTFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 (352)
Q Consensus 67 ~~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~ 145 (352)
T Consensus 98 iR~l~~~~~~~~~~~~~kV~ii~~ae~mn~~aaNaLLK~LEEPp~~~~fiL~t~~~~~---llpTI--~SRc~~~~~~~p 172 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNVQAANSLLKVLEEPPPQVVFLLVSHAADK---VLPTI--KSRCRKMVLPAP 172 (325)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECCHHH---CCCHH--HHCCCCCCCCCC
T ss_conf 9999999710865689469998577775899999999984178888489998798464---62339--864542108995
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 20013588988754302566756799999620012355689999997510344434888887753101221114678887
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINAT 225 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai 225 (352)
T Consensus 173 ~~~~~~~~L~~~----gv--~-~~~~~La~-~~gapl-----------~~~~-~-----~~~~~r--------~~ll~~L 219 (325)
T PRK08699 173 SHEEALAYLRER----GV--A-EPEERLAF-HSGAPL-----------FDEE-D-----ELRALR--------AKLLDIL 219 (325)
T ss_pred CHHHHHHHHHHC----CC--C-CHHHHHHH-CCCCCH-----------HHHC-C-----HHHHHH--------HHHHHHH
T ss_conf 999999999974----89--7-67899976-599811-----------2317-4-----369999--------9999997
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 64102369999999853110001458999999999999999830256898999986089999768999999986499899
Q gi|254780804|r 226 IQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNL 305 (352)
Q Consensus 226 ~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~ 305 (352)
T Consensus 220 ~~~~~~~~l~~a~~~~k~~~~l~~~l~wlq~wl~DL~~~~----~~~~----------~~y~~d~~~~L~~lA~~~~~~~ 285 (325)
T PRK08699 220 AEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCL----QHMK----------PVYYPAYEDRLLQTASGFRPRN 285 (325)
T ss_pred HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HCCC----------CCCCHHHHHHHHHHHHHCCHHH
T ss_conf 2644055999999987565848999999999999999998----2698----------5438768999999987089999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999995328999899999999999996310
Q gi|254780804|r 306 VRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTACK 344 (352)
Q Consensus 306 l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~~ 344 (352)
T Consensus 286 L~~~~~~l~~~~r~~~-~nlN~~L~lE~LLl~y~~l~~~ 323 (325)
T PRK08699 286 VFAAEDMLKQLAPYGF-HTLNVKMQIEHLLINYLELKKE 323 (325)
T ss_pred HHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998545-9987899999999999988751