HHsearch alignment for GI: 254780804 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.60 E-value=1.8e-11 Score=95.08 Aligned_cols=302 Identities=10% Similarity=0.043 Sum_probs=219.8
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC------------------CCCCCEEEEEEHHH--HHCCHHHHHHH
Q ss_conf 10010138479995699658999999999973356------------------66773077620889--64189999998
Q gi|254780804|r 14 TKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT------------------YHDPFSLVVLNALE--IQKNISTFWNE 73 (352)
Q Consensus 14 ~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~------------------~~~~~~~~~~~~~e--~~~d~~~l~~~ 73 (352)
T Consensus 32 ~~~~~~~~-a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~~~~~ 110 (663)
T PRK08770 32 LDSGRVHH-AFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACLDIDAGRYIDLLEIDAASNTGVDDVREVIEN 110 (663)
T ss_pred HHCCCCCE-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 97099740-47622799888889999999986789999999787787789885489886588646765888999999984
Q ss_pred HHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 71788888823999847741-04578988988510565607999852654311356676543112101466442001358
Q gi|254780804|r 74 INSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMD 152 (352)
Q Consensus 74 ~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~ 152 (352)
T Consensus 111 ~~~~p~~~~~kvy~idevhmls~~~fna~lktleepp~~v~f~~att~~~k~---p~t--~~src~~f~~~~~~~~~~~~ 185 (663)
T PRK08770 111 AQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEEPPEHVKFLLATTDPQKL---PVT--VLSRCLQFNLKRLDEDQIQG 185 (663)
T ss_pred CCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHH--HHHHHHHCCCCCCCHHHHHH
T ss_conf 4358877743699970043328999999987402786442899854873337---489--99888763437799999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89887543025667567999996200123556899999975103444348888877531012211146788876410236
Q gi|254780804|r 153 LIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYN 232 (352)
Q Consensus 153 ~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~ 232 (352)
T Consensus 186 ~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~~q~~~~~--~~~~~~~~v~~mlg~~~~~~~~~l~~al~~~d~~~ 263 (663)
T PRK08770 186 QMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLLDQAIAYA--GGALREDVVRTMLGTVDRTQVGAMLQALADGDGAR 263 (663)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 9999999839976999999999974785677888999999866--89768999999848888789999999999668999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999998531100014589999999999999998302568989999860899997689999999864998999999999
Q gi|254780804|r 233 AIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHK 312 (352)
Q Consensus 233 a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~ 312 (352)
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~~q~~~~~~--~-------------~~~~~~~~~lA~~~~~e~vQL~YQI 328 (663)
T PRK08770 264 LLQVVAALAEFSPDWSGVLEALAEALHRIQVQQLVPSVA--F-------------VGDGIDPTPFAAQLRPEVVQLWYQM 328 (663)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC--C-------------CCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999868899999999999999999998463012--4-------------5435679999972899999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999999953289998999999999999
Q gi|254780804|r 313 IDHRIHLARKKKYLEKNIIFQTILYIA 339 (352)
Q Consensus 313 L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352)
T Consensus 329 aL~Gr~dL~~-APd~~~gfeM~LLRml 354 (663)
T PRK08770 329 ALNGRRDLYL-APSPRAGFEMAVLRML 354 (663)
T ss_pred HHHHHHHCCC-CCCHHHHHHHHHHHHH
T ss_conf 9830432556-9866786999999984