HHsearch alignment for GI: 254780804 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=99.66 E-value=1.3e-12 Score=102.66 Aligned_cols=301 Identities=10% Similarity=0.047 Sum_probs=219.9
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC------------------CCCCEEEEEEHHH--HHCCHHHHHHHHHC
Q ss_conf 101384799956996589999999999733566------------------6773077620889--64189999998717
Q gi|254780804|r 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITY------------------HDPFSLVVLNALE--IQKNISTFWNEINS 76 (352)
Q Consensus 17 ~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~------------------~~~~~~~~~~~~e--~~~d~~~l~~~~~t 76 (352)
T Consensus 35 ~rl~h-aylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C~~i~~g~~~d~~EiDaAs~~~vdd~rel~~~~~y 113 (717)
T PRK08853 35 NRLHH-AYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATCKEIDEGRFVDLLEIDAASRTKVEDTRELLDNVQY 113 (717)
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 99740-57610889888989999999986789999999788870267674478775245405656788999999985554
Q ss_pred CCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 88888823999847741-04578988988510565607999852654311356676543112101466442001358898
Q gi|254780804|r 77 TSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155 (352)
Q Consensus 77 ~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~ 155 (352)
T Consensus 114 ~p~~~~yKvyiiDEvHmls~~afnAlLKtlEEPP~hv~FilaTT~~~ki---p~Ti--lSRc~~f~l~~~~~~~i~~~l~ 188 (717)
T PRK08853 114 KPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKL---PVTI--LSRCLQFHLKPISVDQIHQQLD 188 (717)
T ss_pred CCCCCCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHHHHCCCCCCCHHHHHHHHH
T ss_conf 8877854799983054438999999987603787564899843873437---3889--8765442326899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87543025667567999996200123556899999975103444348888877531012211146788876410236999
Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 (352)
Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~ 235 (352)
T Consensus 189 ~i~~~E~i~~~~~al~~ia~~a~Gs~Rdalsl~dqaia~~--~g~~~~~~v~~mlg~~d~~~~~~ll~al~~~d~~~~~~ 266 (717)
T PRK08853 189 FVLDKEQVSAEARALGLIAHAADGSMRDALSLTDQAIALG--NGQVTTDIVSHMLGTLDTDQAIHLLEAISSKQPQTAMD 266 (717)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999759876999999999976883778888999999965--89716999999858887789999999999558999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99998531100014589999999999999998302568989999860899997689999999864998999999999999
Q gi|254780804|r 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 (352)
Q Consensus 236 ~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~ 315 (352)
T Consensus 267 ~~~~~~~~~~~~~~~l~~l~~~lh~ia~~q~~p~--------~~~~~-----~~~~~~i~~la~~~~~e~~Ql~YQi~l~ 333 (717)
T PRK08853 267 CIQQLADNGVEWDGLLQQLATQLHRIAMYQALPA--------TLDKA-----QPDAERIELLSKALSPQDVQLYYQIALK 333 (717)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHH--------HHCCC-----CCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999998688999999999999999999984814--------21244-----6418999999983899999999999970
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999953289998999999999999
Q gi|254780804|r 316 RIHLARKKKYLEKNIIFQTILYIA 339 (352)
Q Consensus 316 ~d~~~K~~~~~~~~il~~~ll~l~ 339 (352)
T Consensus 334 gr~dl~~-apd~~~g~eM~lLRml 356 (717)
T PRK08853 334 GRQDLPL-APNGRIGMEMIVLRMM 356 (717)
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHH
T ss_conf 3011566-9963676999999997