HHsearch alignment for GI: 254780804 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=99.73 E-value=1e-13 Score=109.87 Aligned_cols=308 Identities=10% Similarity=0.081 Sum_probs=228.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-----------------------CCCCCEEEEEEHHH--HH
Q ss_conf 753210010138479995699658999999999973356-----------------------66773077620889--64
Q gi|254780804|r 10 IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISIT-----------------------YHDPFSLVVLNALE--IQ 64 (352)
Q Consensus 10 ~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~-----------------------~~~~~~~~~~~~~e--~~ 64 (352)
T Consensus 28 l~na~~~~r~~h-aylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~~g~~~d~~EiDaas~~~v 106 (721)
T PRK12323 28 LTHALEQQRLHH-AYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGV 106 (721)
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCH
T ss_conf 999997199754-4750279988898999999999768998667898788787765468775689876477436767888
Q ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 18999999871788888823999847741-04578988988510565607999852654311356676543112101466
Q gi|254780804|r 65 KNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCY 143 (352)
Q Consensus 65 ~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~ 143 (352)
T Consensus 107 ~~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~afnalLKtlEePP~hv~FilaTT~~~Ki---p~Ti--lSRc~~f~~~ 181 (721)
T PRK12323 107 DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI---PVTV--LSRCLQFNLK 181 (721)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHC---CHHH--HHHHHHCCCC
T ss_conf 9999999854558876644699985400058999999998401797553899943863448---5889--8776542347
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 44200135889887543025667567999996200123556899999975103444348888877531012211146788
Q gi|254780804|r 144 PDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIIN 223 (352)
Q Consensus 144 ~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~d 223 (352)
T Consensus 182 ~~~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~RDalslldQaia~~~--g~~~~~~v~~mlg~~d~~~~~~ll~ 259 (721)
T PRK12323 182 QMPPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMRDALSLTDQAIAYSA--GNVSEEAVRGMLGAIDQRYLVRLLD 259 (721)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 89999999999999998399779999999999758964768889999998658--9626999999868887789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
Q ss_conf 87641023699999998531100014589999999999999998302568989999860899997689999999864998
Q gi|254780804|r 224 ATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNK 303 (352)
Q Consensus 224 ai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~ 303 (352)
T Consensus 260 al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~~lh~ia~~q~~p~~----~~~---------~~~~~~~~~~la~~~~~ 326 (721)
T PRK12323 260 ALAAEDGAAVLAIADEMADRSLSFAGALQDLASLLSKVALAQRVPAA----VQD---------DWPEADDIRRLAGVFDA 326 (721)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC----CCC---------CCHHHHHHHHHHHCCCH
T ss_conf 99955899999999999986889999999999999999999856200----135---------55008999999962999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999999999999999953289998999999999999
Q gi|254780804|r 304 NLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIA 339 (352)
Q Consensus 304 ~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~ 339 (352)
T Consensus 327 e~~Ql~yqi~l~gr~dl~~-ap~~~~g~eM~lLRml 361 (721)
T PRK12323 327 QAVQLFYQVANLGRSELAL-APDEYAGFTMTLLRML 361 (721)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH
T ss_conf 9999999999831766511-9880250999999998