HHsearch alignment for GI: 254780804 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.72  E-value=4e-14  Score=112.57  Aligned_cols=280  Identities=15%  Similarity=0.125  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEE------------------EHH-HH--
Q ss_conf             8753210010138479995699658999999999973356667----7307762------------------088-96--
Q gi|254780804|r    9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVL------------------NAL-EI--   63 (352)
Q Consensus         9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----~~~~~~~------------------~~~-e~--   63 (352)
T Consensus        26 ~L~~~~~~~~~ph--lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~~~~~~~  103 (337)
T PRK12402         26 HLSALAASGNLPH--LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDDPKRKYK  103 (337)
T ss_pred             HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCCHHHCCC
T ss_conf             9999997799876--98889298489999999999967997567833311653113564001016642344201533277


Q ss_pred             --HCCHHHHH-HHHHCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             --41899999-9871788888823999847741-0457898898851056560799985265431135667654311210
Q gi|254780804|r   64 --QKNISTFW-NEINSTSLFSKKKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA  139 (352)
Q Consensus        64 --~~d~~~l~-~~~~t~slF~~~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~  139 (352)
T Consensus       104 ~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~---ii~tI--~SRC~~  178 (337)
T PRK12402        104 SVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSK---LIPPI--RSRCLP  178 (337)
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCHHH--HHHCEE
T ss_conf             3789999999998614887788049997071317999999999887408876699872386444---75247--762445


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf             14664420013588988754302566756799999620012355689999997510344434888887753101221114
Q gi|254780804|r  140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIE  219 (352)
Q Consensus       140 v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if  219 (352)
T Consensus       179 i~F~~~s~~~i~~~L~~I~~~E~i~~~~~~l~~ia~~s~GdlR~ain~Lq~~~~~--~~~~~~~~~~~~~~~~~~~~~i~  256 (337)
T PRK12402        179 LFFRPVPDDEIRSVLESIAAAEGVEISDDGLDLIAYYAEGDLRKAILTLQLAAEA--EGEVTTEAALEELSDTGTDETVE  256 (337)
T ss_pred             EECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHCCCCHHHHH
T ss_conf             4358989999999999999984999899999999998699899999999999872--79977188999987789799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             6788876410236999999985-311000145899999999999999983025689899998608999976899999998
Q gi|254780804|r  220 EIINATIQGKIYNAIMLADFFL-ASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESL  298 (352)
Q Consensus       220 ~L~dai~~~~~~~a~~~l~~l~-~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~  298 (352)
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~il~~l~~~~~---------------------------------------  297 (337)
T PRK12402        257 EALDAAEAGDFTDARSLLDDLLIDEGLSGREVLRELLEVAR---------------------------------------  297 (337)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------------------
T ss_conf             99999984899999999999887559999999999999998---------------------------------------


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             649989999999999999999532899989999999999
Q gi|254780804|r  299 RIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILY  337 (352)
Q Consensus       299 ~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~  337 (352)
T Consensus       298 ~~~~~~~~~~i~~~~a~~e~rl~~-g~~~~lqL~a~la~  335 (337)
T PRK12402        298 RGYSEYNVAELATLAADADARLTD-AANERIQLNALLAE  335 (337)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf             747868999999999999988751-79999999999984