HHsearch alignment for GI: 254780804 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=99.07 E-value=2.6e-07 Score=67.40 Aligned_cols=275 Identities=13% Similarity=0.077 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHH-HHCCHHHHHHHHH-CCCCCCC
Q ss_conf 3378875321001013847999569965899999999997335666773077620889-6418999999871-7888888
Q gi|254780804|r 5 ESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALE-IQKNISTFWNEIN-STSLFSK 82 (352)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e-~~~d~~~l~~~~~-t~slF~~ 82 (352)
T Consensus 38 g~g~~Lrr~i~~~~~~S--~Il~GPPGtGKTTLA~iIA~~t~~------~F~~lsAv~sgvkdlr~ii~~A~~~~~~~g~ 109 (726)
T PRK13341 38 GEGRLLRRAIKADRVGS--LILYGPPGVGKTTLARIIANHTRA------HFSSLNAVLAGVKDLRAEVDAAKERLERHGK 109 (726)
T ss_pred CCCCHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 89828999997699982--788897999999999999887488------6799856203779999999999999874599
Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 23999847741-0457898898851056560799985265431135667654311210146644200135889887543-
Q gi|254780804|r 83 KKIILIENLST-EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI- 160 (352)
Q Consensus 83 ~klIii~~~~~-~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~- 160 (352)
T Consensus 110 ~tILFIDEIHRfNK~QQD~LLp~vE~---G~i~LIGATTENP~F~vn~AL--lSR~~vf~L~~L~~~dl~~il~rAl~d~ 184 (726)
T PRK13341 110 RTILFIDEVHRFNKAQQDALLPWVEN---GTVTLIGATTENPYFEVNKAL--VSRSRLFRLKSLEDEDLHQLLKRALQDK 184 (726)
T ss_pred CEEEEEECHHHCCHHHHHHHHHHHCC---CEEEEEEECCCCCCEEECHHH--HHHCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 65999862542588789987888606---838999704789743642988--8323466743899999999999998767
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHC------CCCCC----HHH
Q ss_conf ------0256675679999962001235568999999751034----443488888775310------12211----146
Q gi|254780804|r 161 ------GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE----DILITEQHVKDIICD------THVLY----IEE 220 (352)
Q Consensus 161 ------~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~----~~~It~~dI~~~v~~------~~~~~----if~ 220 (352)
T Consensus 185 ~~g~~~~~i~i~~~al~~l~~~s~GDaR~aLN~LElav~~~~~~~~~~~~i~~~~~~~~~~~~~~~YDk~GD~HYd~iSA 264 (726)
T PRK13341 185 ERGYGDRNIDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGVIHINLAIAEESIQQRAVLYDKEGDAHFDTISA 264 (726)
T ss_pred HCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 43256678775989999999975973999999999999707457688344359999999856660568775178899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 78887641023699999998531100014589999999999999998302568989999860899997689999999864
Q gi|254780804|r 221 IINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 (352)
Q Consensus 221 L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~ 300 (352)
T Consensus 265 fiKSiRGSDpDAALywLARMLeaGEDP~fI-------aRRLii~As-EDIGlAdP~Al~----------va~aa~~A~e~ 326 (726)
T PRK13341 265 FIKSLRGSDPDAALYWLARMVEAGEDPRFI-------FRRMLIAAS-EDVGLADPQALV----------VVEACAAAFER 326 (726)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHH-HHCCCCCHHHHH----------HHHHHHHHHHH
T ss_conf 999865489678999999999759988999-------999999998-402366847999----------99999999997
Q ss_pred CCHHHHHHHH
Q ss_conf 9989999999
Q gi|254780804|r 301 WNKNLVRETL 310 (352)
Q Consensus 301 ~s~~~l~~~l 310 (352)
T Consensus 327 iG~PE~ri~L 336 (726)
T PRK13341 327 VGLPEGLYPL 336 (726)
T ss_pred HCCHHHHHHH
T ss_conf 4791779999