HHsearch alignment for GI: 254780804 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=96.40 E-value=0.08 Score=31.08 Aligned_cols=200 Identities=11% Similarity=0.148 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCC----CCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCC-
Q ss_conf 8875321001013847999569965899999999997335----66677307762088964189999998717888888-
Q gi|254780804|r 8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISI----TYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK- 82 (352)
Q Consensus 8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~----~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~- 82 (352)
T Consensus 166 aLlaK~aSPfPQ-H--iiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTLRWDPREv-----TNPLLGSV 237 (616)
T TIGR02903 166 ALLAKLASPFPQ-H--IILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTLRWDPREV-----TNPLLGSV 237 (616)
T ss_pred HHHHHHCCCCCC-C--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-----CCCCCCCC
T ss_conf 999763188866-0--785573388478999998762136874476113785751576266774101-----47767762
Q ss_pred --------CE-----------EEEEECCCC------H-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCH-----HHHHHH
Q ss_conf --------23-----------999847741------0-4578988988510565607999852654311-----356676
Q gi|254780804|r 83 --------KK-----------IILIENLST------E-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNN-----TLRKIA 131 (352)
Q Consensus 83 --------~k-----------lIii~~~~~------~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~-----kl~k~~ 131 (352)
T Consensus 238 HDPIYQGa~RDLAE~GvPEPk~GLVT~AHGGvLFIDEIGELD~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lF 317 (616)
T TIGR02903 238 HDPIYQGARRDLAETGVPEPKLGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLF 317 (616)
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 57655676401104787989898710047756765021122278763244432264366532124875378655888852
Q ss_pred HHH-----------------------HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HHHH
Q ss_conf 543-----------------------112101466442001358898875430256675679999962001235--5689
Q gi|254780804|r 132 EKF-----------------------TSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRI--ASRN 186 (352)
Q Consensus 132 e~~-----------------------~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~--~l~~ 186 (352)
T Consensus 318 e~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~Iv~~AA~klnv~L~~gV~e~Ia~YTieGRkAvnILA 397 (616)
T TIGR02903 318 EEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEIVLNAAEKLNVKLAEGVEELIARYTIEGRKAVNILA 397 (616)
T ss_pred CCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 26888256872661588244051233014313217988789999999988861770003648787214713112223465
Q ss_pred HHHHHHHHCC-------CCCCCCHHHHHHHHHCCCC
Q ss_conf 9999975103-------4443488888775310122
Q gi|254780804|r 187 ELQKLSSYCL-------EDILITEQHVKDIICDTHV 215 (352)
Q Consensus 187 EleKL~ly~~-------~~~~It~~dI~~~v~~~~~ 215 (352)
T Consensus 398 D~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv~~sRl 433 (616)
T TIGR02903 398 DVYGYALYKKAEALKEEDKVTITADDVKEVVQISRL 433 (616)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHCCC
T ss_conf 467676530455567777426618677767753045