HHsearch alignment for GI: 254780804 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.57 E-value=1.2e-05 Score=56.42 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=120.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC---HHHHHH
Q ss_conf 79995699658999999999973356667730776208896418999999871788888823999847741---045789
Q gi|254780804|r 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST---EKKVLD 99 (352)
Q Consensus 23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~---~k~~~~ 99 (352)
T Consensus 40 ~l~i~G~~GsGKTHLl~a~~~~~~~~~---~~~~yl~~~~~~~~~~~~l~~------l~~~d~l~iDDi~~i~~~~~~e~ 110 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQADPEVLEG------LEQADLVCLDDVEAIAGQPEWQE 110 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEECHHHHHHHHHHHHHH------CCCCCEEEEECHHHHCCCHHHHH
T ss_conf 699989999988999999999986269---957995299987753999972------74489999966333437837899
Q ss_pred HHHHHHHCC-CCCEEEEEEECCCCCCH--HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 889885105-65607999852654311--356676543112101466442001358898875430256675679999962
Q gi|254780804|r 100 CLEEIIIKN-ICNHIIIIKSNEIKKNN--TLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLAN 176 (352)
Q Consensus 100 ~l~~~~~~~-~~~~~li~~a~~l~k~~--kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~ 176 (352)
T Consensus 111 ~lF~l~N~~~~~~~~ilits~~~p~~l~~~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k~~~~r~i~i~~~vi~yl~~r 190 (226)
T TIGR03420 111 ALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH 190 (226)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCHHHCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999986528289867888232032017799999688568527999999999999999985998899999999986
Q ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHH
Q ss_conf 00123556899999975103-444348888877531
Q gi|254780804|r 177 LGGDRIASRNELQKLSSYCL-EDILITEQHVKDIIC 211 (352)
Q Consensus 177 ~g~d~~~l~~EleKL~ly~~-~~~~It~~dI~~~v~ 211 (352)
T Consensus 191 ~~R~~~~l~~~l~~Ld~~sl~~kr~ITi~l~kevLa 226 (226)
T TIGR03420 191 GSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226 (226)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 379899999999999999998089999999999849