HHsearch alignment for GI: 254780804 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.58 E-value=0.0032 Score=40.31 Aligned_cols=164 Identities=10% Similarity=0.148 Sum_probs=96.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHH
Q ss_conf 138479995699658999999999973356667730776208896418999999871788888823999847741-0457
Q gi|254780804|r 19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKV 97 (352)
Q Consensus 19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~ 97 (352)
T Consensus 50 l~h--~lf~GPPG~GKTTlAriiAk~~~~------~~~~~s~~~i~-~~~di~~~l---~~~~~~~ILFIDEIHr~nK~q 117 (234)
T pfam05496 50 LDH--VLLYGPPGLGKTTLANIIANEMGV------NIRITSGPALE-KPGDLAAIL---TNLEPGDVLFIDEIHRLNRAV 117 (234)
T ss_pred CCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEECCHHHH-HHHHHHHHH---HHCCCCCEEEEECHHHCCHHH
T ss_conf 662--788789999888999999984087------53761426664-389999999---845899889996654358768
Q ss_pred HHHHHHHHHC----------CCCCE-------EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8988988510----------56560-------799985265431135667654311210146644200135889887543
Q gi|254780804|r 98 LDCLEEIIIK----------NICNH-------IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI 160 (352)
Q Consensus 98 ~~~l~~~~~~----------~~~~~-------~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~ 160 (352)
T Consensus 118 qd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATT--e~~~l~~pl-~sR~~i~~~l~~l~~edl~~il~r~~~~ 194 (234)
T pfam05496 118 EEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATT--RAGLLTSPL-RDRFGIVLRLEFYSVEELEEIVKRSARI 194 (234)
T ss_pred HHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECC--CCCCCCHHH-HHHHHHEEECCCCCHHHHHHHHHHHHHH
T ss_conf 8744553346169999636766324652689759985215--666477779-9762112442468999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 0256675679999962001235568999999751034
Q gi|254780804|r 161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE 197 (352)
Q Consensus 161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~ 197 (352)
T Consensus 195 l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~ 231 (234)
T pfam05496 195 LGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQV 231 (234)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3999599999999997799899998999999999987