HHsearch alignment for GI: 254780804 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=97.58  E-value=0.0032  Score=40.31  Aligned_cols=164  Identities=10%  Similarity=0.148  Sum_probs=96.5

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHH
Q ss_conf             138479995699658999999999973356667730776208896418999999871788888823999847741-0457
Q gi|254780804|r   19 LSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKV   97 (352)
Q Consensus        19 ~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~   97 (352)
T Consensus        50 l~h--~lf~GPPG~GKTTlAriiAk~~~~------~~~~~s~~~i~-~~~di~~~l---~~~~~~~ILFIDEIHr~nK~q  117 (234)
T pfam05496        50 LDH--VLLYGPPGLGKTTLANIIANEMGV------NIRITSGPALE-KPGDLAAIL---TNLEPGDVLFIDEIHRLNRAV  117 (234)
T ss_pred             CCE--EEEECCCCCCHHHHHHHHHHHHCC------CEEEECCHHHH-HHHHHHHHH---HHCCCCCEEEEECHHHCCHHH
T ss_conf             662--788789999888999999984087------53761426664-389999999---845899889996654358768


Q ss_pred             HHHHHHHHHC----------CCCCE-------EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8988988510----------56560-------799985265431135667654311210146644200135889887543
Q gi|254780804|r   98 LDCLEEIIIK----------NICNH-------IIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLI  160 (352)
Q Consensus        98 ~~~l~~~~~~----------~~~~~-------~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~  160 (352)
T Consensus       118 qd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATT--e~~~l~~pl-~sR~~i~~~l~~l~~edl~~il~r~~~~  194 (234)
T pfam05496       118 EEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATT--RAGLLTSPL-RDRFGIVLRLEFYSVEELEEIVKRSARI  194 (234)
T ss_pred             HHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECC--CCCCCCHHH-HHHHHHEEECCCCCHHHHHHHHHHHHHH
T ss_conf             8744553346169999636766324652689759985215--666477779-9762112442468999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             0256675679999962001235568999999751034
Q gi|254780804|r  161 GQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLE  197 (352)
Q Consensus       161 ~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~  197 (352)
T Consensus       195 l~i~i~~eal~~IA~~s~Gd~R~ALnlLe~v~d~a~~  231 (234)
T pfam05496       195 LGVEIDEEGAAEIARRSRGTPRIANRLLRRVRDFAQV  231 (234)
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             3999599999999997799899998999999999987