HHsearch alignment for GI: 254780804 and conserved domain: pfam12169
>pfam12169 DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau.
Probab=99.17 E-value=1.8e-09 Score=81.68 Aligned_cols=132 Identities=12% Similarity=0.137 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 48888877531012211146788876410236999999985311000145899999999999999983025689899998
Q gi|254780804|r 201 ITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQ 280 (352)
Q Consensus 201 It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~ 280 (352)
T Consensus 1 It~~~V~~mLG~~~~~~l~~L~~aI~~~d~~~~l~~l~~l~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~----~-~~-- 73 (143)
T pfam12169 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHLLTRLKIAPDA----A-DD-- 73 (143)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC----C-CC--
T ss_conf 9799999984899889999999999828999999999999987989999999999999999999867630----0-01--
Q ss_pred HHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 608999976899999998649989999999999999999532899989999999999999631
Q gi|254780804|r 281 KTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQTAC 343 (352)
Q Consensus 281 ~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~~a~ 343 (352)
T Consensus 74 ---~~~~~~~~~~l~~~a~~~~~~~L~~~~qil~~~~~el~~s-~~p~~~lEm~llRl~~~~~ 132 (143)
T pfam12169 74 ---LSLPEEERERIAALAKKLSPEVLSRLWQMLLKGIEEVKNA-PDPRQAAEMALLRLAYAAD 132 (143)
T ss_pred ---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCC
T ss_conf ---2257788999999986067999999999999999997428-8869999999999998375