HHsearch alignment for GI: 254780804 and conserved domain: pfam12213
>pfam12213 Dpoe2NT DNA polymerases epsilon N terminal. This domain is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam04042. There is a single completely conserved residue F that may be functionally important. This domain is the N terminal domain of DNA polymerase epsilon subunit B. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. This domain has close structural relation to AAA+ protein C terminal domains.
Probab=90.62 E-value=0.66 Score=24.99 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 01358898875430256675679999962001-2355689999997510344434888887753
Q gi|254780804|r 148 IHLMDLIEESLLIGQKSISKEAKQILLANLGG-DRIASRNELQKLSSYCLEDILITEQHVKDII 210 (352)
Q Consensus 148 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~-d~~~l~~EleKL~ly~~~~~~It~~dI~~~v 210 (352)
T Consensus 3 ~~lr~~i~~~Fkl~G~~Lr~eA~~yl~~~l~~~~~~er~~~l~kii~~v~-kQ~Lss~~Iek~~ 65 (72)
T pfam12213 3 AALRRRVVSAFKLHGFSLRSEASKYLAEVLLSLGEPEREDWLEKIIEAVE-KQPLSSSMIERSV 65 (72)
T ss_pred HHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHH
T ss_conf 88999999887241030438899999998467998999999999999996-5888710513999