HHsearch results for GI: 254780804 and protein with PDBid: 1fnn_A
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.40 E-value=0.78 Score=23.07 Aligned_cols=201 Identities=11% Similarity=0.061 Sum_probs=103.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHH----------------------HHCC-C
Q ss_conf 4799956996589999999999733566677307762088964189999998----------------------7178-8
Q gi|254780804|r 22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE----------------------INST-S 78 (352)
Q Consensus 22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~----------------------~~t~-s 78 (352)
.-.+|||+----+...++.+.+.+..... ......++... .+...++.. +... .
T Consensus 45 ~~~li~GppGtGKT~~ar~la~~l~~~~~--~~~~~vn~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTT--ARFVYINGFIY-RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC--CEEEEEETTTC-CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCC--CCEEEECCHHC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 81799889999699999999998531258--97698553111-6589999888887233323246516689999999986
Q ss_pred CCCCCEEEEEECCCCH-HHHHHHHHHHHHC----CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 8888239998477410-4578988988510----5656079998526543113566765431121014664420013588
Q gi|254780804|r 79 LFSKKKIILIENLSTE-KKVLDCLEEIIIK----NICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352)
Q Consensus 79 lF~~~klIii~~~~~~-k~~~~~l~~~~~~----~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352)
--+..-++++.+.... ......+...... ......+|..+........+.......-....+.+.|.+..++...
T Consensus 122 ~~~~~~~~~lde~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~l~~I 201 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp HTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 41665433105887766888888999998765215771799992676422220252233025774002799999999999
Q ss_pred HHHHHHH--CCCCCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 9887543--02566756799999620---------012355689999997510--3444348888877531012211146
Q gi|254780804|r 154 IEESLLI--GQKSISKEAKQILLANL---------GGDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTHVLYIEE 220 (352)
Q Consensus 154 i~~~~~~--~g~~i~~~a~~~L~~~~---------g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~~~~~if~ 220 (352)
+..++.. ....++++++.++++.+ ++|.+.+.+-++.-...+ .+...++.++|...+.........+
T Consensus 202 l~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~Gd~R~ai~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~ 281 (389)
T 1fnn_A 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEE 281 (389)
T ss_dssp HHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 99999873445677888999999998987500235899999999999999999861878789999999999997561789
Q ss_pred HHHHH
Q ss_conf 78887
Q gi|254780804|r 221 IINAT 225 (352)
Q Consensus 221 L~dai 225 (352)
....+
T Consensus 282 ~~~~l 286 (389)
T 1fnn_A 282 VLIGL 286 (389)
T ss_dssp HHHHS
T ss_pred HHHCC
T ss_conf 98639