HHsearch results for GI: 254780804 and protein with PDBid: 1in4_A

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.10  E-value=0.0006  Score=43.71  Aligned_cols=212  Identities=11%  Similarity=0.082  Sum_probs=125.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHH
Q ss_conf             9995699658999999999973356667730776208896418999999871788888823999847741-045789889
Q gi|254780804|r   24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLE  102 (352)
Q Consensus        24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~  102 (352)
                      +||||+.---+-..+..+.+.+...      .....+... .....+...+   .-++.+.+++++.... .+...+.+.
T Consensus        54 lLf~GPPGtGKTTlA~iiA~~~~~~------~~~~s~~~~-~~~~d~~~~~---~~~~~~~ilfIDEihr~~k~~qd~ll  123 (334)
T 1in4_A           54 VLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVL-VKQGDMAAIL---TSLERGDVLFIDEIHRLNKAVEELLY  123 (334)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCC------EEEEETTTC-CSHHHHHHHH---HHCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCC------CCCCCCCCC-CCHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             7988969988999999999831887------445678532-1267899998---86402530234458654366887510


Q ss_pred             HHHHC------------------CCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             88510------------------5656079998526543-1135667654311210146644200135889887543025
Q gi|254780804|r  103 EIIIK------------------NICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK  163 (352)
Q Consensus       103 ~~~~~------------------~~~~~~li~~a~~l~k-~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~  163 (352)
                      ..+++                  ++...+++.......+ ...++     +.....+.+.+.+..++...++..+...++
T Consensus       124 ~~~E~~~i~~l~g~~~~~~~~~~~~~~~~~i~att~~~~~~~~l~-----sR~~~~~~~~~~~~~~l~~il~~~~~~~~i  198 (334)
T 1in4_A          124 SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR-----SRFGIILELDFYTVKELKEIIKRAASLMDV  198 (334)
T ss_dssp             HHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH-----TTCSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred             CCHHCEEEEEEECCCCCCCCEECCCCCEEEEEECCCCCCCCHHHH-----HHHEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             100020699885267445540047775579974267543637777-----660026521678989999999988765234


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCC------CCCHHHHHHHHHH---HHHHH
Q ss_conf             66756799999620012355689999997510--3444348888877531012------2111467888764---10236
Q gi|254780804|r  164 SISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTH------VLYIEEIINATIQ---GKIYN  232 (352)
Q Consensus       164 ~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~~------~~~if~L~dai~~---~~~~~  232 (352)
                      .++++++..++..+++|.+.+.|-++....++  .+...|+.+++...+....      ...-.+++.|+..   |. ..
T Consensus       199 ~~~~~al~~ia~~s~Gd~R~aln~Le~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~isal~ks~rGs-dv  277 (334)
T 1in4_A          199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGG-PV  277 (334)
T ss_dssp             CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTC-CB
T ss_pred             CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC-CC
T ss_conf             65678999999974785899999999999985431058758999999998516565688477899999999975898-72


Q ss_pred             HHHHHHHHHHHHCCCHHHHHH
Q ss_conf             999999985311000145899
Q gi|254780804|r  233 AIMLADFFLASKMPSHALLHG  253 (352)
Q Consensus       233 a~~~l~~l~~~g~~~~~il~~  253 (352)
                      ++..+..++  |+++..|-..
T Consensus       278 gL~~La~~l--ged~~tie~v  296 (334)
T 1in4_A          278 GLNALAASL--GVEADTLSEV  296 (334)
T ss_dssp             CHHHHHHHH--TSCHHHHHHH
T ss_pred             CHHHHHHHH--CCCHHHHHHH
T ss_conf             199999884--8873427888