HHsearch results for GI: 254780804 and protein with PDBid: 1in4_A
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.10 E-value=0.0006 Score=43.71 Aligned_cols=212 Identities=11% Similarity=0.082 Sum_probs=125.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCC-HHHHHHHHH
Q ss_conf 9995699658999999999973356667730776208896418999999871788888823999847741-045789889
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSKKKIILIENLST-EKKVLDCLE 102 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF~~~klIii~~~~~-~k~~~~~l~ 102 (352)
+||||+.---+-..+..+.+.+... .....+... .....+...+ .-++.+.+++++.... .+...+.+.
T Consensus 54 lLf~GPPGtGKTTlA~iiA~~~~~~------~~~~s~~~~-~~~~d~~~~~---~~~~~~~ilfIDEihr~~k~~qd~ll 123 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVL-VKQGDMAAIL---TSLERGDVLFIDEIHRLNKAVEELLY 123 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC------EEEEETTTC-CSHHHHHHHH---HHCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCC------CCCCCCCCC-CCHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 7988969988999999999831887------445678532-1267899998---86402530234458654366887510
Q ss_pred HHHHC------------------CCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 88510------------------5656079998526543-1135667654311210146644200135889887543025
Q gi|254780804|r 103 EIIIK------------------NICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQK 163 (352)
Q Consensus 103 ~~~~~------------------~~~~~~li~~a~~l~k-~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~ 163 (352)
..+++ ++...+++.......+ ...++ +.....+.+.+.+..++...++..+...++
T Consensus 124 ~~~E~~~i~~l~g~~~~~~~~~~~~~~~~~i~att~~~~~~~~l~-----sR~~~~~~~~~~~~~~l~~il~~~~~~~~i 198 (334)
T 1in4_A 124 SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR-----SRFGIILELDFYTVKELKEIIKRAASLMDV 198 (334)
T ss_dssp HHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH-----TTCSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHCEEEEEEECCCCCCCCEECCCCCEEEEEECCCCCCCCHHHH-----HHHEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 100020699885267445540047775579974267543637777-----660026521678989999999988765234
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCC------CCCHHHHHHHHHH---HHHHH
Q ss_conf 66756799999620012355689999997510--3444348888877531012------2111467888764---10236
Q gi|254780804|r 164 SISKEAKQILLANLGGDRIASRNELQKLSSYC--LEDILITEQHVKDIICDTH------VLYIEEIINATIQ---GKIYN 232 (352)
Q Consensus 164 ~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~--~~~~~It~~dI~~~v~~~~------~~~if~L~dai~~---~~~~~ 232 (352)
.++++++..++..+++|.+.+.|-++....++ .+...|+.+++...+.... ...-.+++.|+.. |. ..
T Consensus 199 ~~~~~al~~ia~~s~Gd~R~aln~Le~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~isal~ks~rGs-dv 277 (334)
T 1in4_A 199 EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGG-PV 277 (334)
T ss_dssp CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTC-CB
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC-CC
T ss_conf 65678999999974785899999999999985431058758999999998516565688477899999999975898-72
Q ss_pred HHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999999985311000145899
Q gi|254780804|r 233 AIMLADFFLASKMPSHALLHG 253 (352)
Q Consensus 233 a~~~l~~l~~~g~~~~~il~~ 253 (352)
++..+..++ |+++..|-..
T Consensus 278 gL~~La~~l--ged~~tie~v 296 (334)
T 1in4_A 278 GLNALAASL--GVEADTLSEV 296 (334)
T ss_dssp CHHHHHHHH--TSCHHHHHHH
T ss_pred CHHHHHHHH--CCCHHHHHHH
T ss_conf 199999884--8873427888