HHsearch results for GI: 254780804 and protein with PDBid: 1jr3_A
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.85 E-value=3.1e-17 Score=131.77 Aligned_cols=304 Identities=11% Similarity=0.049 Sum_probs=233.4
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC------------------CCEEEEEEHHH--HHCCHHHHHHHHHC
Q ss_conf 10138479995699658999999999973356667------------------73077620889--64189999998717
Q gi|254780804|r 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD------------------PFSLVVLNALE--IQKNISTFWNEINS 76 (352)
Q Consensus 17 ~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~------------------~~~~~~~~~~e--~~~d~~~l~~~~~t 76 (352)
...+| -|||||+.---+...+..+.+.+..+... ..++..++... ..+++..+.+.+..
T Consensus 35 ~~~~h-~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~~ir~~~~~~~~ 113 (373)
T 1jr3_A 35 GRIHH-AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 113 (373)
T ss_dssp TCCCS-EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTS
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 99771-47657999988999999999986787788767676535899997589971798522102889999999999854
Q ss_pred CCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 888888239998477410-4578988988510565607999852654311356676543112101466442001358898
Q gi|254780804|r 77 TSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIE 155 (352)
Q Consensus 77 ~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~ 155 (352)
.|..|+.|+|+|+++... ......|...++.|++++.+|+.+....+- ...+ ...+..+.+.+++..++..|+.
T Consensus 114 ~~~~~~~kviiide~d~l~~~a~n~Llk~lEep~~~~~~il~t~~~~~~---~~ti--~SRc~~i~~~~~~~~~~~~~l~ 188 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL---PVTI--LSRCLQFHLKALDVEQIRHQLE 188 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS---CHHH--HTTSEEEECCCCCHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHC---HHHH--HHHHHHCCCCCCCHHHHHHHHH
T ss_conf 6657997699986836389999999999985788673898844875654---2899--9654310113467077899999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 87543025667567999996200123556899999975103444348888877531012211146788876410236999
Q gi|254780804|r 156 ESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIM 235 (352)
Q Consensus 156 ~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~~~a~~ 235 (352)
..+...|+.++++++..++...+|+.+.+.+.++....+. ...++.+++.+.++......++++.+++..++..+++.
T Consensus 189 ~i~~~e~~~~~~~~l~~i~~~s~G~~R~al~lL~~~~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~~~i~~~~~~~~~~ 266 (373)
T 1jr3_A 189 HILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMA 266 (373)
T ss_dssp HHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT--TTCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 9999819998999999999872883999999999899846--88522999999848996688899999987489999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99998531100014589999999999999998302568989999860899997689999999864998999999999999
Q gi|254780804|r 236 LADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDH 315 (352)
Q Consensus 236 ~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l~~L~~ 315 (352)
.++.+...|.++..++..+..+++.+...+.. +...... .......+.+++++++...+.+++..+.+
T Consensus 267 ~l~~l~~~~~d~~~~l~~ll~~~~~l~~~k~~----~~~~~~~--------~~~~~~~i~~la~~is~~~L~~~~~~l~~ 334 (373)
T 1jr3_A 267 LINEAAARGIEWEALLVEMLGLLHRIAMVQLS----PAALGND--------MAAIELRMRELARTIPPTDIQLYYQTLLI 334 (373)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC----TTCCCSG--------GGGTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC----HHHHCCC--------CHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999880999999999999999999999847----2533034--------32189999999967999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99995328999899999999999996
Q gi|254780804|r 316 RIHLARKKKYLEKNIIFQTILYIAQT 341 (352)
Q Consensus 316 ~d~~~K~~~~~~~~il~~~ll~l~~~ 341 (352)
+...++.++ .+...++.++++++.-
T Consensus 335 a~~~l~~~~-n~~L~lE~~Llrl~~~ 359 (373)
T 1jr3_A 335 GRKELPYAP-DRRMGVEMTLLRALAF 359 (373)
T ss_dssp HHHHTTTSS-SHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCC-CHHHHHHHHHHHHHHC
T ss_conf 999963089-9589999999999974