HHsearch results for GI: 254780804 and protein with PDBid: 1l8q_A

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=97.91  E-value=0.00031  Score=45.64  Aligned_cols=166  Identities=11%  Similarity=0.155  Sum_probs=98.7

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCC------CCCCCCEEEEEECCCC-
Q ss_conf             847999569965899999999997335666773077620889641899999987178------8888823999847741-
Q gi|254780804|r   21 HFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINST------SLFSKKKIILIENLST-   93 (352)
Q Consensus        21 ~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~------slF~~~klIii~~~~~-   93 (352)
                      ++ .++||+----+...++.+...+...+   ..+......+...+.   ...+..-      ..+....++++++... 
T Consensus        38 np-l~l~G~~G~GKTHLl~Ai~~~~~~~~---~~v~y~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~dlLiiDDi~~l  110 (324)
T 1l8q_A           38 NP-IFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDFAQAM---VEHLKKGTINEFRNMYKSVDLLLLDDVQFL  110 (324)
T ss_dssp             SS-EEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHH---HHHHHHTCHHHHHHHHHTCSEEEEECGGGG
T ss_pred             CE-EEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEHHHHHHHH---HHHHHCCCHHHHHHHHHCCCEEECCCHHHH
T ss_conf             61-89888999989999999999998549---975994499999999---999864878999988512564000306654


Q ss_pred             --HHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf             --045789889885105-656079998526543113--566765431121014664420013588988754302566756
Q gi|254780804|r   94 --EKKVLDCLEEIIIKN-ICNHIIIIKSNEIKKNNT--LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKE  168 (352)
Q Consensus        94 --~k~~~~~l~~~~~~~-~~~~~li~~a~~l~k~~k--l~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~  168 (352)
                        .....+.+-..+..- ..+..+|+.+......-.  .-.+...-..+.++...| +.......++..+...|+.++++
T Consensus       111 ~~~~~~qe~lf~l~n~~~~~~k~iiits~~~P~~l~~~~~~L~SRl~~Gl~v~I~P-d~~~r~~iL~k~a~~~~i~l~~e  189 (324)
T 1l8q_A          111 SGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKE  189 (324)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECC-CHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             15557899999999999870996898569885654132267887864765899688-83999999999998747778789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             799999620012355689999997510
Q gi|254780804|r  169 AKQILLANLGGDRIASRNELQKLSSYC  195 (352)
Q Consensus       169 a~~~L~~~~g~d~~~l~~EleKL~ly~  195 (352)
                      ++++|++... |.+.+...+..|...+
T Consensus       190 vl~yia~~~~-nvR~Legal~~l~~~a  215 (324)
T 1l8q_A          190 VIDYLLENTK-NVREIEGKIKLIKLKG  215 (324)
T ss_dssp             HHHHHHHHCS-SHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCC-CHHHHHHHHHHHHHHH
T ss_conf             9999986589-7888999999999999