HHsearch results for GI: 254780804 and protein with PDBid: 1sxj_D

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73  E-value=1.2e-14  Score=114.61  Aligned_cols=287  Identities=13%  Similarity=0.079  Sum_probs=200.4

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHH-----HH-HCCHHHHHHHHH-------
Q ss_conf             87532100101384799956996589999999999733566677307762088-----96-418999999871-------
Q gi|254780804|r    9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL-----EI-QKNISTFWNEIN-------   75 (352)
Q Consensus         9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~-----e~-~~d~~~l~~~~~-------   75 (352)
                      .+++.-++-..+|  +||||+.-.-+...+..+.+.+..+.............     +. ......+.....       
T Consensus        48 ~L~~~i~~~~~~~--lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (353)
T 1sxj_D           48 VLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHD  125 (353)
T ss_dssp             HHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTH
T ss_pred             HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999997699875--99889599989999999998447875445440121101345730778899999877442235667


Q ss_pred             -CCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             -7888888239998477410-45789889885105656079998526543113566765431121014664420013588
Q gi|254780804|r   76 -STSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL  153 (352)
Q Consensus        76 -t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~  153 (352)
                       .....+..|+|+++++... ......+...+..++..+.+++......+-.   ..+  ...+..+.+.+.+..++..+
T Consensus       126 ~~~~~~~~~kviiiDe~d~l~~~~~~~l~~~~e~~~~~~~~i~~~~~~~~i~---~~i--~sr~~~i~f~~~~~~~i~~~  200 (353)
T 1sxj_D          126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII---DPL--ASQCSKFRFKALDASNAIDR  200 (353)
T ss_dssp             HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC---HHH--HHHSEEEECCCCCHHHHHHH
T ss_pred             HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHH--HCCCHHHHCCCCCHHHHHHH
T ss_conf             6504667725999967030689999998752036874322322147621067---365--22201220267889999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             98875430256675679999962001235568999999751---034443488888775310122111467888764102
Q gi|254780804|r  154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI  230 (352)
Q Consensus       154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly---~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~  230 (352)
                      +...+.++|+.++++++..++..++||.+.+.+.|+..+..   .++.+.||.++|.++++......++++++++..+|.
T Consensus       201 L~~i~~~e~~~i~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~l~~~~~  280 (353)
T 1sxj_D          201 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDF  280 (353)
T ss_dssp             HHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCH
T ss_conf             99997762357887899999862299999999999999861612478873459999998689999999999999986999


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             36999999985311000145899999999999999983025689899998608999976899999998649989999999
Q gi|254780804|r  231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL  310 (352)
Q Consensus       231 ~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l  310 (352)
                      ..++..+..++..|.+|..|+..+.+++.         ...                            ..+.....+++
T Consensus       281 ~~~~~~l~~l~~~g~~~~~i~~~l~~~~~---------~~~----------------------------~~~~~~~~~i~  323 (353)
T 1sxj_D          281 DEIKKYVNTFMKSGWSAASVVNQLHEYYI---------TND----------------------------NFDTNFKNQIS  323 (353)
T ss_dssp             HHHHHHHHHHHHTSCCCTTHHHHHHHHHH---------HCS----------------------------SSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HHC----------------------------CCCHHHHHHHH
T ss_conf             99999999999859999999999999998---------707----------------------------79989999999


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             999999999532899989999999999999
Q gi|254780804|r  311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQ  340 (352)
Q Consensus       311 ~~L~~~d~~~K~~~~~~~~il~~~ll~l~~  340 (352)
                      ..+.++|..+.. +..+..-++.++++|++
T Consensus       324 ~~~~~~~~~l~~-~~~~~l~l~~ll~~l~~  352 (353)
T 1sxj_D          324 WLLFTTDSRLNN-GTNEHIQLLNLLVKISQ  352 (353)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHC
T ss_conf             999999999983-79999999999999835