HHsearch results for GI: 254780804 and protein with PDBid: 1sxj_D
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=1.2e-14 Score=114.61 Aligned_cols=287 Identities=13% Similarity=0.079 Sum_probs=200.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHH-----HH-HCCHHHHHHHHH-------
Q ss_conf 87532100101384799956996589999999999733566677307762088-----96-418999999871-------
Q gi|254780804|r 9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNAL-----EI-QKNISTFWNEIN------- 75 (352)
Q Consensus 9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~-----e~-~~d~~~l~~~~~------- 75 (352)
.+++.-++-..+| +||||+.-.-+...+..+.+.+..+............. +. ......+.....
T Consensus 48 ~L~~~i~~~~~~~--lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (353)
T 1sxj_D 48 VLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHD 125 (353)
T ss_dssp HHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTH
T ss_pred HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997699875--99889599989999999998447875445440121101345730778899999877442235667
Q ss_pred -CCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf -7888888239998477410-45789889885105656079998526543113566765431121014664420013588
Q gi|254780804|r 76 -STSLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDL 153 (352)
Q Consensus 76 -t~slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~ 153 (352)
.....+..|+|+++++... ......+...+..++..+.+++......+-. ..+ ...+..+.+.+.+..++..+
T Consensus 126 ~~~~~~~~~kviiiDe~d~l~~~~~~~l~~~~e~~~~~~~~i~~~~~~~~i~---~~i--~sr~~~i~f~~~~~~~i~~~ 200 (353)
T 1sxj_D 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII---DPL--ASQCSKFRFKALDASNAIDR 200 (353)
T ss_dssp HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC---HHH--HHHSEEEECCCCCHHHHHHH
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHH--HCCCHHHHCCCCCHHHHHHH
T ss_conf 6504667725999967030689999998752036874322322147621067---365--22201220267889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 98875430256675679999962001235568999999751---034443488888775310122111467888764102
Q gi|254780804|r 154 IEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSY---CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKI 230 (352)
Q Consensus 154 i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly---~~~~~~It~~dI~~~v~~~~~~~if~L~dai~~~~~ 230 (352)
+...+.++|+.++++++..++..++||.+.+.+.|+..+.. .++.+.||.++|.++++......++++++++..+|.
T Consensus 201 L~~i~~~e~~~i~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 280 (353)
T 1sxj_D 201 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDF 280 (353)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCH
T ss_conf 99997762357887899999862299999999999999861612478873459999998689999999999999986999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 36999999985311000145899999999999999983025689899998608999976899999998649989999999
Q gi|254780804|r 231 YNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETL 310 (352)
Q Consensus 231 ~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~~s~~~l~~~l 310 (352)
..++..+..++..|.+|..|+..+.+++. ... ..+.....+++
T Consensus 281 ~~~~~~l~~l~~~g~~~~~i~~~l~~~~~---------~~~----------------------------~~~~~~~~~i~ 323 (353)
T 1sxj_D 281 DEIKKYVNTFMKSGWSAASVVNQLHEYYI---------TND----------------------------NFDTNFKNQIS 323 (353)
T ss_dssp HHHHHHHHHHHHTSCCCTTHHHHHHHHHH---------HCS----------------------------SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HHC----------------------------CCCHHHHHHHH
T ss_conf 99999999999859999999999999998---------707----------------------------79989999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 999999999532899989999999999999
Q gi|254780804|r 311 HKIDHRIHLARKKKYLEKNIIFQTILYIAQ 340 (352)
Q Consensus 311 ~~L~~~d~~~K~~~~~~~~il~~~ll~l~~ 340 (352)
..+.++|..+.. +..+..-++.++++|++
T Consensus 324 ~~~~~~~~~l~~-~~~~~l~l~~ll~~l~~ 352 (353)
T 1sxj_D 324 WLLFTTDSRLNN-GTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHC
T ss_conf 999999999983-79999999999999835